####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS490_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS490_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 358 - 376 4.67 9.48 LCS_AVERAGE: 55.36 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 364 - 371 1.95 12.96 LCS_AVERAGE: 19.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 361 - 365 0.53 17.83 LONGEST_CONTINUOUS_SEGMENT: 5 367 - 371 0.73 11.51 LCS_AVERAGE: 12.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 13 3 3 5 6 7 9 13 13 15 17 18 21 22 22 22 23 25 26 26 26 LCS_GDT A 352 A 352 3 4 15 3 3 3 3 4 4 6 10 13 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 353 E 353 3 4 15 3 3 3 3 4 5 7 8 11 14 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 354 E 354 3 4 15 3 3 3 3 4 5 7 12 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 355 L 355 3 5 15 3 3 3 4 5 5 7 9 12 16 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 356 G 356 3 5 15 3 3 3 4 5 5 7 9 10 12 12 13 15 17 21 24 25 26 26 26 LCS_GDT N 357 N 357 3 5 18 3 3 3 4 5 5 6 7 8 11 12 13 15 16 21 22 25 26 26 26 LCS_GDT I 358 I 358 3 5 19 3 3 3 4 5 6 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 359 I 359 3 5 19 3 3 3 4 5 7 7 9 11 12 12 15 16 19 22 24 25 26 26 26 LCS_GDT V 360 V 360 3 6 19 3 3 3 4 4 7 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT A 361 A 361 5 6 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 362 W 362 5 6 19 3 5 5 5 5 7 10 13 15 15 17 21 22 22 22 24 25 26 26 26 LCS_GDT N 363 N 363 5 6 19 3 5 5 6 6 10 12 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 364 P 364 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 365 N 365 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 366 L 366 4 8 19 3 3 5 6 7 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 367 W 367 5 8 19 3 5 5 6 7 9 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 368 K 368 5 8 19 3 5 5 6 7 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 369 K 369 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 370 G 370 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT T 371 T 371 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 372 N 372 4 7 19 3 4 4 5 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 373 G 373 4 6 19 3 3 4 5 5 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT Y 374 Y 374 4 6 19 3 3 4 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 375 P 375 4 6 19 3 4 4 4 5 8 10 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 376 I 376 4 6 19 3 4 4 4 8 8 9 10 11 12 13 14 16 19 22 24 25 26 26 26 LCS_GDT F 377 F 377 4 6 13 3 4 4 5 8 8 9 10 11 11 11 12 13 15 15 16 17 17 19 19 LCS_GDT Q 378 Q 378 4 6 13 3 4 4 5 8 8 9 10 11 11 11 12 12 15 15 16 17 17 19 19 LCS_GDT W 379 W 379 4 6 13 3 3 4 5 8 8 9 10 11 11 11 12 14 15 16 17 17 17 18 19 LCS_GDT S 380 S 380 4 6 13 3 3 4 5 8 8 9 10 11 11 12 13 14 15 16 17 17 17 19 21 LCS_GDT E 381 E 381 3 6 13 3 3 4 5 8 8 9 10 11 11 11 12 12 15 16 17 17 17 18 19 LCS_AVERAGE LCS_A: 29.31 ( 12.80 19.77 55.36 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 GDT PERCENT_AT 9.68 16.13 16.13 22.58 25.81 32.26 41.94 41.94 48.39 54.84 58.06 67.74 70.97 70.97 70.97 77.42 80.65 83.87 83.87 83.87 GDT RMS_LOCAL 0.04 0.53 0.53 1.33 1.52 2.05 2.75 2.75 3.18 3.53 3.76 4.29 4.43 4.43 4.43 5.35 5.43 5.68 5.68 5.68 GDT RMS_ALL_AT 16.05 17.83 17.83 10.13 10.09 10.08 10.23 10.23 10.15 9.61 9.44 9.11 9.08 9.08 9.08 8.64 8.70 8.59 8.59 8.59 # Checking swapping # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.512 0 0.036 0.567 6.000 50.238 42.302 LGA A 352 A 352 6.405 0 0.393 0.392 8.885 18.333 15.619 LGA E 353 E 353 7.294 0 0.610 0.530 11.629 15.357 7.778 LGA E 354 E 354 5.686 0 0.603 0.863 7.784 14.762 20.582 LGA L 355 L 355 7.934 0 0.652 0.702 9.625 5.595 8.452 LGA G 356 G 356 13.197 0 0.561 0.561 13.847 0.000 0.000 LGA N 357 N 357 12.890 0 0.319 0.260 15.375 0.000 0.000 LGA I 358 I 358 8.912 0 0.607 1.546 10.235 0.833 8.512 LGA I 359 I 359 12.407 0 0.613 1.547 17.873 0.000 0.000 LGA V 360 V 360 8.522 0 0.628 1.459 10.373 5.000 3.946 LGA A 361 A 361 3.435 0 0.649 0.582 5.459 33.452 39.714 LGA W 362 W 362 8.959 0 0.117 1.177 19.219 5.714 1.633 LGA N 363 N 363 5.148 0 0.062 0.175 6.403 32.619 30.119 LGA P 364 P 364 1.456 0 0.780 0.859 2.839 69.048 66.122 LGA N 365 N 365 2.878 0 0.740 0.628 7.847 61.429 39.345 LGA L 366 L 366 3.105 0 0.550 1.339 9.705 59.643 33.810 LGA W 367 W 367 3.283 0 0.063 0.901 7.589 61.190 31.054 LGA K 368 K 368 2.750 0 0.035 0.832 3.011 60.952 58.042 LGA K 369 K 369 2.253 0 0.097 0.864 4.637 64.762 55.661 LGA G 370 G 370 2.308 0 0.034 0.034 2.308 66.786 66.786 LGA T 371 T 371 2.198 0 0.637 0.587 3.928 61.429 55.646 LGA N 372 N 372 3.001 0 0.641 1.202 9.393 67.143 39.524 LGA G 373 G 373 3.061 0 0.097 0.097 4.033 48.571 48.571 LGA Y 374 Y 374 2.806 0 0.603 0.595 6.465 43.214 42.024 LGA P 375 P 375 6.075 0 0.065 0.334 9.876 12.976 14.830 LGA I 376 I 376 12.731 0 0.167 1.067 15.472 0.119 0.060 LGA F 377 F 377 18.788 0 0.070 1.327 25.446 0.000 0.000 LGA Q 378 Q 378 21.303 0 0.316 0.355 25.730 0.000 0.000 LGA W 379 W 379 22.074 0 0.726 1.547 26.462 0.000 0.000 LGA S 380 S 380 17.897 0 0.259 0.675 19.056 0.000 0.000 LGA E 381 E 381 19.685 1 0.536 1.236 20.997 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 8.128 8.087 10.014 27.715 23.553 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.75 39.516 35.814 0.457 LGA_LOCAL RMSD: 2.745 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.226 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.128 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.524642 * X + -0.254278 * Y + 0.812461 * Z + 55.899433 Y_new = -0.208767 * X + 0.963639 * Y + 0.166783 * Z + -11.829890 Z_new = -0.825328 * X + -0.082114 * Y + -0.558650 * Z + 96.193993 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.762879 0.970784 -2.995652 [DEG: -158.3013 55.6218 -171.6382 ] ZXZ: 1.773264 2.163554 -1.669962 [DEG: 101.6006 123.9625 -95.6818 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS490_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS490_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.75 35.814 8.13 REMARK ---------------------------------------------------------- MOLECULE T0537TS490_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 5.820 15.653 49.115 1.00 0.00 N ATOM 2530 CA SER 351 4.450 15.260 49.237 1.00 0.00 C ATOM 2531 C SER 351 4.304 13.874 48.705 1.00 0.00 C ATOM 2532 O SER 351 5.036 13.452 47.812 1.00 0.00 O ATOM 2533 CB SER 351 3.547 16.207 48.443 1.00 0.00 C ATOM 2534 OG SER 351 2.191 15.807 48.526 1.00 0.00 O ATOM 2535 N ALA 352 3.339 13.127 49.272 1.00 0.00 N ATOM 2536 CA ALA 352 3.029 11.799 48.833 1.00 0.00 C ATOM 2537 C ALA 352 4.275 10.982 48.778 1.00 0.00 C ATOM 2538 O ALA 352 4.453 10.181 47.861 1.00 0.00 O ATOM 2539 CB ALA 352 2.402 11.833 47.447 1.00 0.00 C ATOM 2540 N GLU 353 5.173 11.136 49.765 1.00 0.00 N ATOM 2541 CA GLU 353 6.363 10.347 49.697 1.00 0.00 C ATOM 2542 C GLU 353 6.264 9.289 50.742 1.00 0.00 C ATOM 2543 O GLU 353 5.970 9.570 51.903 1.00 0.00 O ATOM 2544 CB GLU 353 7.597 11.215 49.951 1.00 0.00 C ATOM 2545 CG GLU 353 8.911 10.450 49.920 1.00 0.00 C ATOM 2546 CD GLU 353 10.109 11.340 50.186 1.00 0.00 C ATOM 2547 OE1 GLU 353 9.911 12.552 50.413 1.00 0.00 O ATOM 2548 OE2 GLU 353 11.247 10.826 50.166 1.00 0.00 O ATOM 2549 N GLU 354 6.469 8.021 50.338 1.00 0.00 N ATOM 2550 CA GLU 354 6.434 6.977 51.311 1.00 0.00 C ATOM 2551 C GLU 354 7.677 6.174 51.125 1.00 0.00 C ATOM 2552 O GLU 354 7.785 5.380 50.191 1.00 0.00 O ATOM 2553 CB GLU 354 5.198 6.098 51.108 1.00 0.00 C ATOM 2554 CG GLU 354 5.043 4.997 52.144 1.00 0.00 C ATOM 2555 CD GLU 354 3.835 4.118 51.885 1.00 0.00 C ATOM 2556 OE1 GLU 354 3.155 4.331 50.859 1.00 0.00 O ATOM 2557 OE2 GLU 354 3.570 3.216 52.706 1.00 0.00 O ATOM 2558 N LEU 355 8.654 6.372 52.025 1.00 0.00 N ATOM 2559 CA LEU 355 9.875 5.630 51.975 1.00 0.00 C ATOM 2560 C LEU 355 9.786 4.754 53.176 1.00 0.00 C ATOM 2561 O LEU 355 9.588 5.247 54.285 1.00 0.00 O ATOM 2562 CB LEU 355 11.078 6.573 52.036 1.00 0.00 C ATOM 2563 CG LEU 355 11.189 7.605 50.911 1.00 0.00 C ATOM 2564 CD1 LEU 355 12.376 8.527 51.142 1.00 0.00 C ATOM 2565 CD2 LEU 355 11.376 6.917 49.567 1.00 0.00 C ATOM 2566 N GLY 356 9.929 3.428 53.003 1.00 0.00 N ATOM 2567 CA GLY 356 9.715 2.611 54.156 1.00 0.00 C ATOM 2568 C GLY 356 10.743 1.536 54.225 1.00 0.00 C ATOM 2569 O GLY 356 11.629 1.432 53.379 1.00 0.00 O ATOM 2570 N ASN 357 10.599 0.693 55.268 1.00 0.00 N ATOM 2571 CA ASN 357 11.492 -0.379 55.581 1.00 0.00 C ATOM 2572 C ASN 357 12.812 0.225 55.896 1.00 0.00 C ATOM 2573 O ASN 357 13.842 -0.444 55.865 1.00 0.00 O ATOM 2574 CB ASN 357 11.621 -1.333 54.391 1.00 0.00 C ATOM 2575 CG ASN 357 10.347 -2.112 54.128 1.00 0.00 C ATOM 2576 OD1 ASN 357 9.568 -2.374 55.045 1.00 0.00 O ATOM 2577 ND2 ASN 357 10.132 -2.485 52.872 1.00 0.00 N ATOM 2578 N ILE 358 12.769 1.513 56.283 1.00 0.00 N ATOM 2579 CA ILE 358 13.906 2.302 56.651 1.00 0.00 C ATOM 2580 C ILE 358 13.677 2.724 58.058 1.00 0.00 C ATOM 2581 O ILE 358 12.541 2.797 58.520 1.00 0.00 O ATOM 2582 CB ILE 358 14.054 3.537 55.743 1.00 0.00 C ATOM 2583 CG1 ILE 358 12.816 4.430 55.851 1.00 0.00 C ATOM 2584 CG2 ILE 358 14.218 3.114 54.292 1.00 0.00 C ATOM 2585 CD1 ILE 358 12.962 5.762 55.150 1.00 0.00 C ATOM 2586 N ILE 359 14.775 3.014 58.772 1.00 0.00 N ATOM 2587 CA ILE 359 14.672 3.541 60.096 1.00 0.00 C ATOM 2588 C ILE 359 15.096 4.966 59.959 1.00 0.00 C ATOM 2589 O ILE 359 15.902 5.295 59.090 1.00 0.00 O ATOM 2590 CB ILE 359 15.583 2.781 61.078 1.00 0.00 C ATOM 2591 CG1 ILE 359 17.046 2.893 60.643 1.00 0.00 C ATOM 2592 CG2 ILE 359 15.205 1.309 61.125 1.00 0.00 C ATOM 2593 CD1 ILE 359 18.028 2.354 61.660 1.00 0.00 C ATOM 2594 N VAL 360 14.526 5.864 60.784 1.00 0.00 N ATOM 2595 CA VAL 360 14.833 7.261 60.668 1.00 0.00 C ATOM 2596 C VAL 360 16.314 7.417 60.786 1.00 0.00 C ATOM 2597 O VAL 360 16.974 6.685 61.522 1.00 0.00 O ATOM 2598 CB VAL 360 14.147 8.084 61.773 1.00 0.00 C ATOM 2599 CG1 VAL 360 12.635 7.940 61.684 1.00 0.00 C ATOM 2600 CG2 VAL 360 14.595 7.609 63.148 1.00 0.00 C ATOM 2601 N ALA 361 16.875 8.387 60.037 1.00 0.00 N ATOM 2602 CA ALA 361 18.297 8.540 60.011 1.00 0.00 C ATOM 2603 C ALA 361 18.798 8.817 61.387 1.00 0.00 C ATOM 2604 O ALA 361 18.373 9.760 62.055 1.00 0.00 O ATOM 2605 CB ALA 361 18.689 9.695 59.103 1.00 0.00 C ATOM 2606 N TRP 362 19.739 7.962 61.825 1.00 0.00 N ATOM 2607 CA TRP 362 20.406 8.073 63.084 1.00 0.00 C ATOM 2608 C TRP 362 21.180 9.342 63.061 1.00 0.00 C ATOM 2609 O TRP 362 21.027 10.198 63.931 1.00 0.00 O ATOM 2610 CB TRP 362 21.347 6.886 63.299 1.00 0.00 C ATOM 2611 CG TRP 362 22.073 6.925 64.608 1.00 0.00 C ATOM 2612 CD1 TRP 362 21.621 6.464 65.811 1.00 0.00 C ATOM 2613 CD2 TRP 362 23.383 7.455 64.847 1.00 0.00 C ATOM 2614 NE1 TRP 362 22.567 6.673 66.785 1.00 0.00 N ATOM 2615 CE2 TRP 362 23.659 7.281 66.218 1.00 0.00 C ATOM 2616 CE3 TRP 362 24.349 8.059 64.038 1.00 0.00 C ATOM 2617 CZ2 TRP 362 24.860 7.689 66.796 1.00 0.00 C ATOM 2618 CZ3 TRP 362 25.539 8.463 64.615 1.00 0.00 C ATOM 2619 CH2 TRP 362 25.786 8.278 65.979 1.00 0.00 H ATOM 2620 N ASN 363 22.019 9.517 62.027 1.00 0.00 N ATOM 2621 CA ASN 363 22.774 10.725 61.996 1.00 0.00 C ATOM 2622 C ASN 363 22.538 11.366 60.675 1.00 0.00 C ATOM 2623 O ASN 363 23.082 10.947 59.654 1.00 0.00 O ATOM 2624 CB ASN 363 24.264 10.430 62.175 1.00 0.00 C ATOM 2625 CG ASN 363 25.100 11.691 62.268 1.00 0.00 C ATOM 2626 OD1 ASN 363 24.677 12.762 61.833 1.00 0.00 O ATOM 2627 ND2 ASN 363 26.294 11.568 62.838 1.00 0.00 N ATOM 2628 N PRO 364 21.714 12.366 60.670 1.00 0.00 N ATOM 2629 CA PRO 364 21.566 13.125 59.469 1.00 0.00 C ATOM 2630 C PRO 364 22.776 13.976 59.562 1.00 0.00 C ATOM 2631 O PRO 364 23.377 13.990 60.635 1.00 0.00 O ATOM 2632 CB PRO 364 20.227 13.843 59.648 1.00 0.00 C ATOM 2633 CG PRO 364 20.113 14.061 61.119 1.00 0.00 C ATOM 2634 CD PRO 364 20.703 12.841 61.768 1.00 0.00 C ATOM 2635 N ASN 365 23.182 14.663 58.483 1.00 0.00 N ATOM 2636 CA ASN 365 24.300 15.527 58.684 1.00 0.00 C ATOM 2637 C ASN 365 23.794 16.511 59.678 1.00 0.00 C ATOM 2638 O ASN 365 22.584 16.705 59.785 1.00 0.00 O ATOM 2639 CB ASN 365 24.706 16.194 57.368 1.00 0.00 C ATOM 2640 CG ASN 365 25.340 15.222 56.393 1.00 0.00 C ATOM 2641 OD1 ASN 365 25.829 14.163 56.788 1.00 0.00 O ATOM 2642 ND2 ASN 365 25.333 15.579 55.115 1.00 0.00 N ATOM 2643 N LEU 366 24.687 17.113 60.482 1.00 0.00 N ATOM 2644 CA LEU 366 24.160 18.010 61.460 1.00 0.00 C ATOM 2645 C LEU 366 23.882 19.279 60.742 1.00 0.00 C ATOM 2646 O LEU 366 24.653 20.237 60.802 1.00 0.00 O ATOM 2647 CB LEU 366 25.174 18.235 62.583 1.00 0.00 C ATOM 2648 CG LEU 366 25.553 17.005 63.411 1.00 0.00 C ATOM 2649 CD1 LEU 366 26.594 17.363 64.461 1.00 0.00 C ATOM 2650 CD2 LEU 366 24.333 16.441 64.123 1.00 0.00 C ATOM 2651 N TRP 367 22.734 19.296 60.041 1.00 0.00 N ATOM 2652 CA TRP 367 22.346 20.421 59.263 1.00 0.00 C ATOM 2653 C TRP 367 20.866 20.554 59.415 1.00 0.00 C ATOM 2654 O TRP 367 20.150 19.561 59.518 1.00 0.00 O ATOM 2655 CB TRP 367 22.715 20.210 57.793 1.00 0.00 C ATOM 2656 CG TRP 367 24.192 20.194 57.541 1.00 0.00 C ATOM 2657 CD1 TRP 367 25.169 20.670 58.367 1.00 0.00 C ATOM 2658 CD2 TRP 367 24.860 19.676 56.385 1.00 0.00 C ATOM 2659 NE1 TRP 367 26.405 20.480 57.798 1.00 0.00 N ATOM 2660 CE2 TRP 367 26.242 19.872 56.579 1.00 0.00 C ATOM 2661 CE3 TRP 367 24.426 19.067 55.204 1.00 0.00 C ATOM 2662 CZ2 TRP 367 27.191 19.479 55.637 1.00 0.00 C ATOM 2663 CZ3 TRP 367 25.370 18.679 54.272 1.00 0.00 C ATOM 2664 CH2 TRP 367 26.737 18.885 54.491 1.00 0.00 H ATOM 2665 N LYS 368 20.378 21.809 59.417 1.00 0.00 N ATOM 2666 CA LYS 368 18.999 22.101 59.680 1.00 0.00 C ATOM 2667 C LYS 368 18.150 21.650 58.543 1.00 0.00 C ATOM 2668 O LYS 368 18.586 21.597 57.398 1.00 0.00 O ATOM 2669 CB LYS 368 18.797 23.606 59.871 1.00 0.00 C ATOM 2670 CG LYS 368 19.453 24.166 61.123 1.00 0.00 C ATOM 2671 CD LYS 368 19.184 25.654 61.267 1.00 0.00 C ATOM 2672 CE LYS 368 19.838 26.215 62.520 1.00 0.00 C ATOM 2673 NZ LYS 368 19.575 27.672 62.680 1.00 0.00 N ATOM 2674 N LYS 369 16.896 21.282 58.862 1.00 0.00 N ATOM 2675 CA LYS 369 15.936 20.849 57.892 1.00 0.00 C ATOM 2676 C LYS 369 15.249 22.076 57.374 1.00 0.00 C ATOM 2677 O LYS 369 15.343 23.150 57.967 1.00 0.00 O ATOM 2678 CB LYS 369 14.916 19.904 58.531 1.00 0.00 C ATOM 2679 CG LYS 369 14.049 20.556 59.597 1.00 0.00 C ATOM 2680 CD LYS 369 13.106 19.548 60.232 1.00 0.00 C ATOM 2681 CE LYS 369 12.234 20.201 61.294 1.00 0.00 C ATOM 2682 NZ LYS 369 11.338 19.216 61.959 1.00 0.00 N ATOM 2683 N GLY 370 14.545 21.949 56.232 1.00 0.00 N ATOM 2684 CA GLY 370 13.876 23.084 55.667 1.00 0.00 C ATOM 2685 C GLY 370 12.773 23.457 56.602 1.00 0.00 C ATOM 2686 O GLY 370 12.362 22.663 57.445 1.00 0.00 O ATOM 2687 N THR 371 12.240 24.684 56.442 1.00 0.00 N ATOM 2688 CA THR 371 11.238 25.171 57.342 1.00 0.00 C ATOM 2689 C THR 371 10.034 24.301 57.213 1.00 0.00 C ATOM 2690 O THR 371 10.028 23.337 56.453 1.00 0.00 O ATOM 2691 CB THR 371 10.846 26.624 57.018 1.00 0.00 C ATOM 2692 OG1 THR 371 10.310 26.694 55.690 1.00 0.00 O ATOM 2693 CG2 THR 371 12.061 27.536 57.106 1.00 0.00 C ATOM 2694 N ASN 372 8.979 24.613 57.986 1.00 0.00 N ATOM 2695 CA ASN 372 7.809 23.787 57.996 1.00 0.00 C ATOM 2696 C ASN 372 7.195 23.799 56.636 1.00 0.00 C ATOM 2697 O ASN 372 7.288 24.779 55.900 1.00 0.00 O ATOM 2698 CB ASN 372 6.792 24.311 59.012 1.00 0.00 C ATOM 2699 CG ASN 372 7.237 24.097 60.446 1.00 0.00 C ATOM 2700 OD1 ASN 372 8.085 23.249 60.722 1.00 0.00 O ATOM 2701 ND2 ASN 372 6.663 24.867 61.363 1.00 0.00 N ATOM 2702 N GLY 373 6.578 22.661 56.266 1.00 0.00 N ATOM 2703 CA GLY 373 5.910 22.512 55.007 1.00 0.00 C ATOM 2704 C GLY 373 6.886 21.873 54.079 1.00 0.00 C ATOM 2705 O GLY 373 6.521 21.134 53.168 1.00 0.00 O ATOM 2706 N TYR 374 8.173 22.172 54.312 1.00 0.00 N ATOM 2707 CA TYR 374 9.283 21.645 53.575 1.00 0.00 C ATOM 2708 C TYR 374 9.427 20.174 53.842 1.00 0.00 C ATOM 2709 O TYR 374 9.648 19.400 52.911 1.00 0.00 O ATOM 2710 CB TYR 374 10.579 22.347 53.985 1.00 0.00 C ATOM 2711 CG TYR 374 10.649 23.798 53.568 1.00 0.00 C ATOM 2712 CD1 TYR 374 9.778 24.306 52.612 1.00 0.00 C ATOM 2713 CD2 TYR 374 11.586 24.656 54.129 1.00 0.00 C ATOM 2714 CE1 TYR 374 9.834 25.631 52.224 1.00 0.00 C ATOM 2715 CE2 TYR 374 11.658 25.983 53.754 1.00 0.00 C ATOM 2716 CZ TYR 374 10.770 26.467 52.792 1.00 0.00 C ATOM 2717 OH TYR 374 10.828 27.788 52.408 1.00 0.00 H ATOM 2718 N PRO 375 9.289 19.738 55.070 1.00 0.00 N ATOM 2719 CA PRO 375 9.541 18.357 55.350 1.00 0.00 C ATOM 2720 C PRO 375 8.548 17.413 54.788 1.00 0.00 C ATOM 2721 O PRO 375 7.451 17.824 54.410 1.00 0.00 O ATOM 2722 CB PRO 375 9.521 18.279 56.878 1.00 0.00 C ATOM 2723 CG PRO 375 8.618 19.391 57.297 1.00 0.00 C ATOM 2724 CD PRO 375 8.854 20.509 56.322 1.00 0.00 C ATOM 2725 N ILE 376 8.949 16.131 54.716 1.00 0.00 N ATOM 2726 CA ILE 376 8.113 15.094 54.207 1.00 0.00 C ATOM 2727 C ILE 376 6.813 15.205 54.922 1.00 0.00 C ATOM 2728 O ILE 376 6.769 15.465 56.122 1.00 0.00 O ATOM 2729 CB ILE 376 8.729 13.703 54.449 1.00 0.00 C ATOM 2730 CG1 ILE 376 10.009 13.536 53.628 1.00 0.00 C ATOM 2731 CG2 ILE 376 7.750 12.610 54.044 1.00 0.00 C ATOM 2732 CD1 ILE 376 10.757 12.254 53.919 1.00 0.00 C ATOM 2733 N PHE 377 5.708 15.053 54.172 1.00 0.00 N ATOM 2734 CA PHE 377 4.418 15.170 54.775 1.00 0.00 C ATOM 2735 C PHE 377 4.239 13.946 55.608 1.00 0.00 C ATOM 2736 O PHE 377 4.546 12.835 55.177 1.00 0.00 O ATOM 2737 CB PHE 377 3.331 15.257 53.702 1.00 0.00 C ATOM 2738 CG PHE 377 1.946 15.440 54.254 1.00 0.00 C ATOM 2739 CD1 PHE 377 1.529 16.674 54.720 1.00 0.00 C ATOM 2740 CD2 PHE 377 1.061 14.377 54.309 1.00 0.00 C ATOM 2741 CE1 PHE 377 0.255 16.842 55.229 1.00 0.00 C ATOM 2742 CE2 PHE 377 -0.213 14.544 54.817 1.00 0.00 C ATOM 2743 CZ PHE 377 -0.617 15.771 55.277 1.00 0.00 C ATOM 2744 N GLN 378 3.759 14.134 56.850 1.00 0.00 N ATOM 2745 CA GLN 378 3.550 13.047 57.756 1.00 0.00 C ATOM 2746 C GLN 378 4.816 12.267 57.850 1.00 0.00 C ATOM 2747 O GLN 378 4.798 11.049 58.015 1.00 0.00 O ATOM 2748 CB GLN 378 2.425 12.140 57.254 1.00 0.00 C ATOM 2749 CG GLN 378 1.071 12.825 57.156 1.00 0.00 C ATOM 2750 CD GLN 378 -0.026 11.885 56.698 1.00 0.00 C ATOM 2751 OE1 GLN 378 0.172 10.672 56.627 1.00 0.00 O ATOM 2752 NE2 GLN 378 -1.190 12.442 56.387 1.00 0.00 N ATOM 2753 N TRP 379 5.964 12.964 57.745 1.00 0.00 N ATOM 2754 CA TRP 379 7.211 12.278 57.872 1.00 0.00 C ATOM 2755 C TRP 379 8.277 13.329 57.936 1.00 0.00 C ATOM 2756 O TRP 379 7.980 14.505 58.132 1.00 0.00 O ATOM 2757 CB TRP 379 7.442 11.358 56.671 1.00 0.00 C ATOM 2758 CG TRP 379 7.499 12.084 55.363 1.00 0.00 C ATOM 2759 CD1 TRP 379 8.604 12.625 54.773 1.00 0.00 C ATOM 2760 CD2 TRP 379 6.402 12.349 54.478 1.00 0.00 C ATOM 2761 NE1 TRP 379 8.266 13.211 53.577 1.00 0.00 N ATOM 2762 CE2 TRP 379 6.918 13.054 53.374 1.00 0.00 C ATOM 2763 CE3 TRP 379 5.035 12.057 54.514 1.00 0.00 C ATOM 2764 CZ2 TRP 379 6.114 13.473 52.314 1.00 0.00 C ATOM 2765 CZ3 TRP 379 4.242 12.475 53.461 1.00 0.00 C ATOM 2766 CH2 TRP 379 4.781 13.174 52.376 1.00 0.00 H ATOM 2767 N SER 380 9.558 12.929 57.825 1.00 0.00 N ATOM 2768 CA SER 380 10.628 13.883 57.882 1.00 0.00 C ATOM 2769 C SER 380 11.879 13.150 57.528 1.00 0.00 C ATOM 2770 O SER 380 11.873 12.257 56.684 1.00 0.00 O ATOM 2771 CB SER 380 10.741 14.477 59.287 1.00 0.00 C ATOM 2772 OG SER 380 11.688 15.530 59.322 1.00 0.00 O ATOM 2773 N GLU 381 13.010 13.551 58.133 1.00 0.00 N ATOM 2774 CA GLU 381 14.233 12.855 57.874 1.00 0.00 C ATOM 2775 C GLU 381 14.177 11.598 58.734 1.00 0.00 C ATOM 2776 O GLU 381 14.185 10.478 58.157 1.00 0.00 O ATOM 2777 CB GLU 381 15.434 13.724 58.253 1.00 0.00 C ATOM 2778 CG GLU 381 15.550 15.007 57.447 1.00 0.00 C ATOM 2779 CD GLU 381 16.634 15.929 57.972 1.00 0.00 C ATOM 2780 OE1 GLU 381 17.254 15.591 59.002 1.00 0.00 O ATOM 2781 OE2 GLU 381 16.863 16.989 57.353 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.36 41.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 108.59 18.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.14 40.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.47 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.46 38.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 89.63 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 97.28 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 88.86 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 109.38 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.43 63.6 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 67.87 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 40.53 85.7 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 64.53 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 51.16 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 31.18 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 32.31 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 10.26 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 31.18 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.91 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.91 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.91 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.13 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.13 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2622 CRMSCA SECONDARY STRUCTURE . . 5.30 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.43 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.31 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.30 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.39 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.59 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.42 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.65 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.85 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.52 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.84 119 99.2 120 CRMSSC BURIED . . . . . . . . 9.13 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.06 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.59 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.37 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.35 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.289 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 4.877 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.529 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 6.039 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.432 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 4.988 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.663 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 6.133 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.458 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.711 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.122 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.633 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 8.369 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.888 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 6.429 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.166 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 6.816 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 9 26 31 31 DISTCA CA (P) 0.00 0.00 6.45 29.03 83.87 31 DISTCA CA (RMS) 0.00 0.00 2.25 3.59 6.32 DISTCA ALL (N) 2 6 15 55 173 253 254 DISTALL ALL (P) 0.79 2.36 5.91 21.65 68.11 254 DISTALL ALL (RMS) 0.89 1.53 2.18 3.54 6.61 DISTALL END of the results output