####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 255), selected 31 , name T0537TS484_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS484_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 358 - 380 4.76 8.40 LONGEST_CONTINUOUS_SEGMENT: 23 359 - 381 4.98 9.25 LCS_AVERAGE: 67.85 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 361 - 377 1.72 9.39 LONGEST_CONTINUOUS_SEGMENT: 17 362 - 378 1.65 10.28 LCS_AVERAGE: 39.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 362 - 376 0.93 9.81 LONGEST_CONTINUOUS_SEGMENT: 15 363 - 377 0.98 10.23 LCS_AVERAGE: 31.74 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 6 6 6 6 6 6 6 7 10 11 14 19 21 23 23 24 27 28 28 28 LCS_GDT A 352 A 352 6 6 13 6 6 6 6 6 6 6 6 9 11 14 15 16 18 21 24 27 28 28 28 LCS_GDT E 353 E 353 6 6 13 6 6 6 6 6 6 6 7 8 11 13 15 16 17 19 20 22 25 27 28 LCS_GDT E 354 E 354 6 6 13 6 6 6 6 6 6 6 7 7 9 12 15 16 17 19 22 27 28 28 28 LCS_GDT L 355 L 355 6 6 13 6 6 6 6 6 6 6 7 7 10 10 13 16 17 18 22 27 28 28 28 LCS_GDT G 356 G 356 6 6 13 6 6 6 6 6 6 6 6 7 9 10 13 13 13 18 19 20 20 23 23 LCS_GDT N 357 N 357 3 4 22 3 3 4 4 4 4 5 7 7 10 11 13 14 17 18 19 21 28 28 28 LCS_GDT I 358 I 358 3 4 23 3 3 4 4 4 4 5 7 9 11 14 16 21 23 23 24 27 28 28 28 LCS_GDT I 359 I 359 3 3 23 1 3 3 3 4 4 6 7 9 11 14 20 21 23 23 24 27 28 28 28 LCS_GDT V 360 V 360 3 3 23 1 3 3 3 4 4 5 7 9 11 14 16 21 23 23 24 27 28 28 28 LCS_GDT A 361 A 361 3 17 23 2 3 4 6 10 13 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT W 362 W 362 15 17 23 4 8 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT N 363 N 363 15 17 23 4 8 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT P 364 P 364 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT N 365 N 365 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT L 366 L 366 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT W 367 W 367 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT K 368 K 368 15 17 23 4 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT K 369 K 369 15 17 23 4 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT G 370 G 370 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT T 371 T 371 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT N 372 N 372 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT G 373 G 373 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT Y 374 Y 374 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT P 375 P 375 15 17 23 4 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT I 376 I 376 15 17 23 5 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT F 377 F 377 15 17 23 4 7 14 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT Q 378 Q 378 4 17 23 3 4 6 9 14 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT W 379 W 379 4 15 23 3 3 5 9 12 13 16 17 18 19 19 20 21 23 23 24 27 28 28 28 LCS_GDT S 380 S 380 3 4 23 3 3 3 4 5 6 7 10 10 14 14 17 20 20 20 23 27 28 28 28 LCS_GDT E 381 E 381 3 4 23 3 3 3 4 5 6 7 9 10 12 14 15 15 16 17 19 20 21 21 22 LCS_AVERAGE LCS_A: 46.34 ( 31.74 39.44 67.85 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 11 15 16 16 16 17 18 18 19 19 20 21 23 23 24 27 28 28 28 GDT PERCENT_AT 19.35 35.48 48.39 51.61 51.61 51.61 54.84 58.06 58.06 61.29 61.29 64.52 67.74 74.19 74.19 77.42 87.10 90.32 90.32 90.32 GDT RMS_LOCAL 0.12 0.60 0.93 1.10 1.10 1.10 1.65 2.15 2.15 2.66 2.66 3.33 4.15 4.66 4.66 5.05 5.94 6.26 6.26 6.31 GDT RMS_ALL_AT 23.29 10.57 9.81 9.90 9.90 9.90 10.28 9.58 9.58 9.99 9.99 9.41 8.36 8.08 8.08 7.85 7.48 7.40 7.40 7.49 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 11.709 0 0.607 0.935 12.614 0.000 0.000 LGA A 352 A 352 15.064 0 0.036 0.040 17.024 0.000 0.000 LGA E 353 E 353 19.550 0 0.038 0.569 23.721 0.000 0.000 LGA E 354 E 354 16.789 0 0.096 1.028 17.315 0.000 0.000 LGA L 355 L 355 14.567 0 0.127 1.370 16.619 0.000 0.595 LGA G 356 G 356 19.962 0 0.228 0.228 19.962 0.000 0.000 LGA N 357 N 357 17.399 0 0.488 0.787 20.859 0.000 0.000 LGA I 358 I 358 12.398 0 0.550 1.041 14.397 0.000 0.000 LGA I 359 I 359 9.567 0 0.557 1.060 12.483 0.119 0.774 LGA V 360 V 360 10.735 0 0.621 0.634 14.941 2.976 1.701 LGA A 361 A 361 5.361 0 0.663 0.603 7.494 29.167 28.571 LGA W 362 W 362 1.343 0 0.622 0.561 5.717 71.429 49.660 LGA N 363 N 363 1.534 0 0.199 1.485 5.938 79.286 59.405 LGA P 364 P 364 0.746 0 0.043 0.350 1.494 88.214 85.306 LGA N 365 N 365 1.634 0 0.126 0.903 2.756 71.071 71.071 LGA L 366 L 366 1.922 0 0.319 1.391 6.651 81.786 60.714 LGA W 367 W 367 1.774 0 0.030 1.162 10.597 68.810 33.844 LGA K 368 K 368 1.465 0 0.049 0.714 1.678 83.690 77.672 LGA K 369 K 369 1.251 0 0.073 0.677 3.669 77.143 69.048 LGA G 370 G 370 1.421 0 0.091 0.091 1.421 81.429 81.429 LGA T 371 T 371 1.552 0 0.027 0.138 2.388 79.286 75.374 LGA N 372 N 372 0.979 0 0.049 0.898 4.753 90.595 70.298 LGA G 373 G 373 0.836 0 0.085 0.085 0.921 90.476 90.476 LGA Y 374 Y 374 0.703 0 0.038 0.185 1.984 88.214 82.302 LGA P 375 P 375 0.498 0 0.024 0.050 0.872 92.857 95.918 LGA I 376 I 376 0.665 0 0.141 1.021 3.138 90.476 82.024 LGA F 377 F 377 1.802 0 0.030 1.028 5.930 60.357 43.853 LGA Q 378 Q 378 5.115 0 0.595 0.490 8.164 25.119 21.905 LGA W 379 W 379 8.140 0 0.626 0.730 8.534 6.905 13.776 LGA S 380 S 380 11.126 0 0.671 0.796 14.670 0.119 0.079 LGA E 381 E 381 16.380 1 0.093 1.026 21.132 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 7.269 7.297 7.818 43.856 38.574 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 18 2.15 55.645 52.163 0.799 LGA_LOCAL RMSD: 2.152 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.578 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.269 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.394752 * X + 0.723654 * Y + 0.566123 * Z + 35.331905 Y_new = -0.343222 * X + -0.687702 * Y + 0.639738 * Z + 42.195240 Z_new = 0.852273 * X + 0.058232 * Y + 0.519846 * Z + 61.449986 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.425907 -1.020315 0.111553 [DEG: -138.9942 -58.4598 6.3915 ] ZXZ: 2.417167 1.024126 1.502577 [DEG: 138.4935 58.6781 86.0913 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS484_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS484_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 18 2.15 52.163 7.27 REMARK ---------------------------------------------------------- MOLECULE T0537TS484_1-D2 USER MOD reduce.3.15.091106 removed 2685 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFR REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 4975 N SER 351 10.738 3.250 46.530 1.00 0.00 N ATOM 4977 CA SER 351 10.326 4.284 45.581 1.00 0.00 C ATOM 4979 CB SER 351 9.659 5.497 46.283 1.00 0.00 C ATOM 4982 OG SER 351 8.512 5.104 47.037 1.00 0.00 O ATOM 4984 C SER 351 11.502 4.844 44.781 1.00 0.00 C ATOM 4985 O SER 351 11.425 5.069 43.577 1.00 0.00 O ATOM 4986 N ALA 352 12.655 5.053 45.444 1.00 0.00 N ATOM 4988 CA ALA 352 13.910 5.431 44.826 1.00 0.00 C ATOM 4990 CB ALA 352 14.942 5.707 45.932 1.00 0.00 C ATOM 4994 C ALA 352 14.487 4.406 43.848 1.00 0.00 C ATOM 4995 O ALA 352 15.016 4.769 42.797 1.00 0.00 O ATOM 4996 N GLU 353 14.393 3.102 44.182 1.00 0.00 N ATOM 4998 CA GLU 353 14.762 1.973 43.338 1.00 0.00 C ATOM 5000 CB GLU 353 14.496 0.684 44.172 1.00 0.00 C ATOM 5003 CG GLU 353 14.664 -0.692 43.480 1.00 0.00 C ATOM 5006 CD GLU 353 14.081 -1.810 44.347 1.00 0.00 C ATOM 5007 OE1 GLU 353 14.854 -2.694 44.789 1.00 0.00 O ATOM 5008 OE2 GLU 353 12.839 -1.806 44.570 1.00 0.00 O ATOM 5009 C GLU 353 13.964 1.929 42.039 1.00 0.00 C ATOM 5010 O GLU 353 14.537 1.871 40.952 1.00 0.00 O ATOM 5011 N GLU 354 12.623 2.056 42.112 1.00 0.00 N ATOM 5013 CA GLU 354 11.741 1.996 40.954 1.00 0.00 C ATOM 5015 CB GLU 354 10.323 1.571 41.414 1.00 0.00 C ATOM 5018 CG GLU 354 10.390 0.197 42.133 1.00 0.00 C ATOM 5021 CD GLU 354 9.060 -0.393 42.579 1.00 0.00 C ATOM 5022 OE1 GLU 354 8.895 -1.626 42.356 1.00 0.00 O ATOM 5023 OE2 GLU 354 8.274 0.294 43.270 1.00 0.00 O ATOM 5024 C GLU 354 11.743 3.279 40.132 1.00 0.00 C ATOM 5025 O GLU 354 11.444 3.290 38.940 1.00 0.00 O ATOM 5026 N LEU 355 12.181 4.401 40.736 1.00 0.00 N ATOM 5028 CA LEU 355 12.497 5.633 40.037 1.00 0.00 C ATOM 5030 CB LEU 355 12.451 6.787 41.075 1.00 0.00 C ATOM 5033 CG LEU 355 12.631 8.225 40.546 1.00 0.00 C ATOM 5035 CD1 LEU 355 11.543 8.614 39.534 1.00 0.00 C ATOM 5039 CD2 LEU 355 12.646 9.219 41.718 1.00 0.00 C ATOM 5043 C LEU 355 13.871 5.583 39.359 1.00 0.00 C ATOM 5044 O LEU 355 14.204 6.398 38.497 1.00 0.00 O ATOM 5045 N GLY 356 14.743 4.630 39.747 1.00 0.00 N ATOM 5047 CA GLY 356 16.095 4.458 39.208 1.00 0.00 C ATOM 5050 C GLY 356 17.101 5.437 39.756 1.00 0.00 C ATOM 5051 O GLY 356 18.280 5.429 39.410 1.00 0.00 O ATOM 5052 N ASN 357 16.658 6.311 40.667 1.00 0.00 N ATOM 5054 CA ASN 357 17.427 7.412 41.209 1.00 0.00 C ATOM 5056 CB ASN 357 16.624 8.739 41.129 1.00 0.00 C ATOM 5059 CG ASN 357 16.610 9.320 39.719 1.00 0.00 C ATOM 5060 OD1 ASN 357 17.153 10.403 39.504 1.00 0.00 O ATOM 5061 ND2 ASN 357 15.984 8.650 38.730 1.00 0.00 N ATOM 5064 C ASN 357 17.732 7.076 42.656 1.00 0.00 C ATOM 5065 O ASN 357 17.337 7.784 43.581 1.00 0.00 O ATOM 5066 N ILE 358 18.422 5.936 42.855 1.00 0.00 N ATOM 5068 CA ILE 358 18.777 5.309 44.123 1.00 0.00 C ATOM 5070 CB ILE 358 19.848 4.232 43.927 1.00 0.00 C ATOM 5072 CG2 ILE 358 21.216 4.887 43.637 1.00 0.00 C ATOM 5076 CG1 ILE 358 19.941 3.214 45.093 1.00 0.00 C ATOM 5079 CD1 ILE 358 18.668 2.378 45.295 1.00 0.00 C ATOM 5083 C ILE 358 19.064 6.208 45.334 1.00 0.00 C ATOM 5084 O ILE 358 19.733 7.240 45.248 1.00 0.00 O ATOM 5085 N ILE 359 18.512 5.817 46.499 1.00 0.00 N ATOM 5087 CA ILE 359 18.615 6.506 47.770 1.00 0.00 C ATOM 5089 CB ILE 359 17.649 5.867 48.779 1.00 0.00 C ATOM 5091 CG2 ILE 359 18.045 4.403 49.080 1.00 0.00 C ATOM 5095 CG1 ILE 359 17.464 6.669 50.090 1.00 0.00 C ATOM 5098 CD1 ILE 359 16.740 8.003 49.886 1.00 0.00 C ATOM 5102 C ILE 359 20.036 6.620 48.326 1.00 0.00 C ATOM 5103 O ILE 359 20.819 5.670 48.344 1.00 0.00 O ATOM 5104 N VAL 360 20.401 7.818 48.816 1.00 0.00 N ATOM 5106 CA VAL 360 21.582 8.052 49.626 1.00 0.00 C ATOM 5108 CB VAL 360 22.611 8.934 48.919 1.00 0.00 C ATOM 5110 CG1 VAL 360 23.833 9.183 49.827 1.00 0.00 C ATOM 5114 CG2 VAL 360 23.051 8.249 47.609 1.00 0.00 C ATOM 5118 C VAL 360 21.099 8.737 50.890 1.00 0.00 C ATOM 5119 O VAL 360 20.514 9.814 50.842 1.00 0.00 O ATOM 5120 N ALA 361 21.291 8.119 52.072 1.00 0.00 N ATOM 5122 CA ALA 361 20.939 8.740 53.336 1.00 0.00 C ATOM 5124 CB ALA 361 21.067 7.728 54.491 1.00 0.00 C ATOM 5128 C ALA 361 21.751 10.000 53.654 1.00 0.00 C ATOM 5129 O ALA 361 22.934 10.096 53.329 1.00 0.00 O ATOM 5130 N TRP 362 21.121 10.994 54.303 1.00 0.00 N ATOM 5132 CA TRP 362 21.799 12.177 54.798 1.00 0.00 C ATOM 5134 CB TRP 362 21.123 13.489 54.306 1.00 0.00 C ATOM 5137 CG TRP 362 21.422 13.929 52.880 1.00 0.00 C ATOM 5138 CD1 TRP 362 22.101 13.296 51.874 1.00 0.00 C ATOM 5140 NE1 TRP 362 22.200 14.125 50.772 1.00 0.00 N ATOM 5142 CE2 TRP 362 21.577 15.319 51.062 1.00 0.00 C ATOM 5143 CD2 TRP 362 21.066 15.229 52.376 1.00 0.00 C ATOM 5144 CE3 TRP 362 20.384 16.296 52.955 1.00 0.00 C ATOM 5146 CZ3 TRP 362 20.224 17.465 52.196 1.00 0.00 C ATOM 5148 CZ2 TRP 362 21.417 16.478 50.313 1.00 0.00 C ATOM 5150 CH2 TRP 362 20.736 17.558 50.895 1.00 0.00 H ATOM 5152 C TRP 362 21.728 12.158 56.316 1.00 0.00 C ATOM 5153 O TRP 362 20.654 12.295 56.898 1.00 0.00 O ATOM 5154 N ASN 363 22.883 11.977 56.992 1.00 0.00 N ATOM 5156 CA ASN 363 22.945 11.829 58.439 1.00 0.00 C ATOM 5158 CB ASN 363 24.370 11.451 58.913 1.00 0.00 C ATOM 5161 CG ASN 363 24.832 10.185 58.208 1.00 0.00 C ATOM 5162 OD1 ASN 363 25.771 10.229 57.407 1.00 0.00 O ATOM 5163 ND2 ASN 363 24.179 9.035 58.479 1.00 0.00 N ATOM 5166 C ASN 363 22.422 13.034 59.238 1.00 0.00 C ATOM 5167 O ASN 363 22.622 14.181 58.827 1.00 0.00 O ATOM 5168 N PRO 364 21.739 12.860 60.373 1.00 0.00 N ATOM 5169 CD PRO 364 21.637 11.594 61.106 1.00 0.00 C ATOM 5172 CA PRO 364 20.794 13.852 60.872 1.00 0.00 C ATOM 5174 CB PRO 364 19.893 13.045 61.823 1.00 0.00 C ATOM 5177 CG PRO 364 20.802 11.929 62.341 1.00 0.00 C ATOM 5180 C PRO 364 21.491 14.983 61.610 1.00 0.00 C ATOM 5181 O PRO 364 20.852 15.983 61.928 1.00 0.00 O ATOM 5182 N ASN 365 22.793 14.858 61.916 1.00 0.00 N ATOM 5184 CA ASN 365 23.555 15.786 62.736 1.00 0.00 C ATOM 5186 CB ASN 365 25.016 15.287 62.903 1.00 0.00 C ATOM 5189 CG ASN 365 25.024 13.843 63.388 1.00 0.00 C ATOM 5190 OD1 ASN 365 24.798 12.919 62.607 1.00 0.00 O ATOM 5191 ND2 ASN 365 25.273 13.629 64.697 1.00 0.00 N ATOM 5194 C ASN 365 23.615 17.215 62.193 1.00 0.00 C ATOM 5195 O ASN 365 23.505 18.193 62.931 1.00 0.00 O ATOM 5196 N LEU 366 23.782 17.358 60.865 1.00 0.00 N ATOM 5198 CA LEU 366 23.935 18.639 60.194 1.00 0.00 C ATOM 5200 CB LEU 366 25.104 18.580 59.180 1.00 0.00 C ATOM 5203 CG LEU 366 26.483 18.307 59.816 1.00 0.00 C ATOM 5205 CD1 LEU 366 27.534 18.086 58.719 1.00 0.00 C ATOM 5209 CD2 LEU 366 26.925 19.446 60.748 1.00 0.00 C ATOM 5213 C LEU 366 22.662 19.031 59.464 1.00 0.00 C ATOM 5214 O LEU 366 22.650 19.927 58.620 1.00 0.00 O ATOM 5215 N TRP 367 21.552 18.356 59.796 1.00 0.00 N ATOM 5217 CA TRP 367 20.258 18.526 59.186 1.00 0.00 C ATOM 5219 CB TRP 367 19.672 17.109 58.968 1.00 0.00 C ATOM 5222 CG TRP 367 18.324 16.984 58.301 1.00 0.00 C ATOM 5223 CD1 TRP 367 18.011 16.691 57.003 1.00 0.00 C ATOM 5225 NE1 TRP 367 16.652 16.480 56.875 1.00 0.00 N ATOM 5227 CE2 TRP 367 16.079 16.641 58.119 1.00 0.00 C ATOM 5228 CD2 TRP 367 17.090 16.962 59.036 1.00 0.00 C ATOM 5229 CE3 TRP 367 16.811 17.149 60.391 1.00 0.00 C ATOM 5231 CZ3 TRP 367 15.483 16.993 60.813 1.00 0.00 C ATOM 5233 CZ2 TRP 367 14.771 16.478 58.540 1.00 0.00 C ATOM 5235 CH2 TRP 367 14.475 16.648 59.902 1.00 0.00 H ATOM 5237 C TRP 367 19.366 19.395 60.067 1.00 0.00 C ATOM 5238 O TRP 367 19.563 19.517 61.273 1.00 0.00 O ATOM 5239 N LYS 368 18.371 20.050 59.453 1.00 0.00 N ATOM 5241 CA LYS 368 17.521 21.038 60.078 1.00 0.00 C ATOM 5243 CB LYS 368 18.304 22.379 60.003 1.00 0.00 C ATOM 5246 CG LYS 368 17.710 23.627 60.668 1.00 0.00 C ATOM 5249 CD LYS 368 18.648 24.828 60.421 1.00 0.00 C ATOM 5252 CE LYS 368 18.420 26.035 61.338 1.00 0.00 C ATOM 5255 NZ LYS 368 19.322 27.136 60.955 1.00 0.00 N ATOM 5259 C LYS 368 16.250 21.056 59.233 1.00 0.00 C ATOM 5260 O LYS 368 16.292 20.678 58.063 1.00 0.00 O ATOM 5261 N LYS 369 15.071 21.463 59.755 1.00 0.00 N ATOM 5263 CA LYS 369 13.864 21.520 58.929 1.00 0.00 C ATOM 5265 CB LYS 369 12.912 20.308 59.164 1.00 0.00 C ATOM 5268 CG LYS 369 11.867 20.069 58.049 1.00 0.00 C ATOM 5271 CD LYS 369 12.083 18.782 57.210 1.00 0.00 C ATOM 5274 CE LYS 369 11.390 17.514 57.741 1.00 0.00 C ATOM 5277 NZ LYS 369 11.599 16.349 56.836 1.00 0.00 N ATOM 5281 C LYS 369 13.162 22.856 59.128 1.00 0.00 C ATOM 5282 O LYS 369 12.893 23.284 60.248 1.00 0.00 O ATOM 5283 N GLY 370 12.910 23.591 58.022 1.00 0.00 N ATOM 5285 CA GLY 370 12.347 24.937 58.045 1.00 0.00 C ATOM 5288 C GLY 370 10.891 25.056 58.427 1.00 0.00 C ATOM 5289 O GLY 370 10.141 24.089 58.507 1.00 0.00 O ATOM 5290 N THR 371 10.422 26.308 58.591 1.00 0.00 N ATOM 5292 CA THR 371 9.047 26.664 58.951 1.00 0.00 C ATOM 5294 CB THR 371 8.880 28.157 59.196 1.00 0.00 C ATOM 5296 OG1 THR 371 9.475 28.914 58.148 1.00 0.00 O ATOM 5298 CG2 THR 371 9.619 28.529 60.485 1.00 0.00 C ATOM 5302 C THR 371 8.010 26.250 57.928 1.00 0.00 C ATOM 5303 O THR 371 6.900 25.862 58.265 1.00 0.00 O ATOM 5304 N ASN 372 8.362 26.306 56.632 1.00 0.00 N ATOM 5306 CA ASN 372 7.517 25.832 55.549 1.00 0.00 C ATOM 5308 CB ASN 372 7.719 26.698 54.281 1.00 0.00 C ATOM 5311 CG ASN 372 7.368 28.147 54.579 1.00 0.00 C ATOM 5312 OD1 ASN 372 8.236 29.018 54.657 1.00 0.00 O ATOM 5313 ND2 ASN 372 6.060 28.433 54.757 1.00 0.00 N ATOM 5316 C ASN 372 7.826 24.378 55.200 1.00 0.00 C ATOM 5317 O ASN 372 7.455 23.889 54.140 1.00 0.00 O ATOM 5318 N GLY 373 8.523 23.649 56.094 1.00 0.00 N ATOM 5320 CA GLY 373 8.703 22.206 56.026 1.00 0.00 C ATOM 5323 C GLY 373 9.820 21.693 55.161 1.00 0.00 C ATOM 5324 O GLY 373 10.067 20.492 55.132 1.00 0.00 O ATOM 5325 N TYR 374 10.562 22.564 54.458 1.00 0.00 N ATOM 5327 CA TYR 374 11.738 22.171 53.694 1.00 0.00 C ATOM 5329 CB TYR 374 12.279 23.335 52.818 1.00 0.00 C ATOM 5332 CG TYR 374 11.223 23.863 51.889 1.00 0.00 C ATOM 5333 CD1 TYR 374 10.853 25.219 51.929 1.00 0.00 C ATOM 5335 CE1 TYR 374 9.879 25.715 51.051 1.00 0.00 C ATOM 5337 CZ TYR 374 9.264 24.859 50.132 1.00 0.00 C ATOM 5338 OH TYR 374 8.288 25.367 49.257 1.00 0.00 H ATOM 5340 CD2 TYR 374 10.602 23.014 50.958 1.00 0.00 C ATOM 5342 CE2 TYR 374 9.622 23.507 50.085 1.00 0.00 C ATOM 5344 C TYR 374 12.899 21.708 54.579 1.00 0.00 C ATOM 5345 O TYR 374 13.236 22.439 55.514 1.00 0.00 O ATOM 5346 N PRO 375 13.562 20.567 54.377 1.00 0.00 N ATOM 5347 CD PRO 375 13.082 19.449 53.571 1.00 0.00 C ATOM 5350 CA PRO 375 14.903 20.318 54.897 1.00 0.00 C ATOM 5352 CB PRO 375 15.297 18.944 54.329 1.00 0.00 C ATOM 5355 CG PRO 375 13.966 18.271 53.979 1.00 0.00 C ATOM 5358 C PRO 375 15.931 21.397 54.579 1.00 0.00 C ATOM 5359 O PRO 375 15.832 22.078 53.559 1.00 0.00 O ATOM 5360 N ILE 376 16.922 21.561 55.460 1.00 0.00 N ATOM 5362 CA ILE 376 18.046 22.458 55.316 1.00 0.00 C ATOM 5364 CB ILE 376 17.888 23.731 56.170 1.00 0.00 C ATOM 5366 CG2 ILE 376 19.171 24.597 56.128 1.00 0.00 C ATOM 5370 CG1 ILE 376 16.649 24.560 55.740 1.00 0.00 C ATOM 5373 CD1 ILE 376 16.277 25.674 56.729 1.00 0.00 C ATOM 5377 C ILE 376 19.216 21.614 55.798 1.00 0.00 C ATOM 5378 O ILE 376 19.053 20.765 56.671 1.00 0.00 O ATOM 5379 N PHE 377 20.415 21.780 55.216 1.00 0.00 N ATOM 5381 CA PHE 377 21.565 20.971 55.554 1.00 0.00 C ATOM 5383 CB PHE 377 21.631 19.746 54.602 1.00 0.00 C ATOM 5386 CG PHE 377 22.589 18.690 55.075 1.00 0.00 C ATOM 5387 CD1 PHE 377 22.141 17.654 55.909 1.00 0.00 C ATOM 5389 CE1 PHE 377 23.019 16.647 56.329 1.00 0.00 C ATOM 5391 CZ PHE 377 24.359 16.676 55.924 1.00 0.00 C ATOM 5393 CD2 PHE 377 23.933 18.708 54.673 1.00 0.00 C ATOM 5395 CE2 PHE 377 24.819 17.712 55.101 1.00 0.00 C ATOM 5397 C PHE 377 22.777 21.868 55.377 1.00 0.00 C ATOM 5398 O PHE 377 22.756 22.771 54.541 1.00 0.00 O ATOM 5399 N GLN 378 23.849 21.665 56.167 1.00 0.00 N ATOM 5401 CA GLN 378 25.072 22.437 56.032 1.00 0.00 C ATOM 5403 CB GLN 378 25.451 23.154 57.349 1.00 0.00 C ATOM 5406 CG GLN 378 24.448 24.269 57.723 1.00 0.00 C ATOM 5409 CD GLN 378 24.904 25.033 58.963 1.00 0.00 C ATOM 5410 OE1 GLN 378 25.840 24.646 59.668 1.00 0.00 O ATOM 5411 NE2 GLN 378 24.219 26.160 59.256 1.00 0.00 N ATOM 5414 C GLN 378 26.228 21.553 55.595 1.00 0.00 C ATOM 5415 O GLN 378 26.732 20.716 56.338 1.00 0.00 O ATOM 5416 N TRP 379 26.694 21.736 54.347 1.00 0.00 N ATOM 5418 CA TRP 379 27.803 20.988 53.785 1.00 0.00 C ATOM 5420 CB TRP 379 27.656 20.852 52.242 1.00 0.00 C ATOM 5423 CG TRP 379 26.236 20.618 51.745 1.00 0.00 C ATOM 5424 CD1 TRP 379 25.557 19.451 51.527 1.00 0.00 C ATOM 5426 NE1 TRP 379 24.276 19.721 51.086 1.00 0.00 N ATOM 5428 CE2 TRP 379 24.120 21.085 51.000 1.00 0.00 C ATOM 5429 CD2 TRP 379 25.334 21.686 51.397 1.00 0.00 C ATOM 5430 CE3 TRP 379 25.487 23.072 51.394 1.00 0.00 C ATOM 5432 CZ3 TRP 379 24.391 23.853 50.997 1.00 0.00 C ATOM 5434 CZ2 TRP 379 23.042 21.859 50.599 1.00 0.00 C ATOM 5436 CH2 TRP 379 23.185 23.256 50.601 1.00 0.00 H ATOM 5438 C TRP 379 29.133 21.672 54.080 1.00 0.00 C ATOM 5439 O TRP 379 29.259 22.892 53.984 1.00 0.00 O ATOM 5440 N SER 380 30.178 20.900 54.442 1.00 0.00 N ATOM 5442 CA SER 380 31.474 21.456 54.812 1.00 0.00 C ATOM 5444 CB SER 380 32.098 20.641 55.976 1.00 0.00 C ATOM 5447 OG SER 380 32.209 19.251 55.652 1.00 0.00 O ATOM 5449 C SER 380 32.486 21.464 53.684 1.00 0.00 C ATOM 5450 O SER 380 33.562 22.031 53.838 1.00 0.00 O ATOM 5451 N GLU 381 32.155 20.857 52.531 1.00 0.00 N ATOM 5453 CA GLU 381 33.056 20.702 51.406 1.00 0.00 C ATOM 5455 CB GLU 381 33.986 19.469 51.583 1.00 0.00 C ATOM 5458 CG GLU 381 35.037 19.230 50.465 1.00 0.00 C ATOM 5461 CD GLU 381 35.879 20.467 50.159 1.00 0.00 C ATOM 5462 OE1 GLU 381 36.999 20.573 50.712 1.00 0.00 O ATOM 5463 OE2 GLU 381 35.396 21.312 49.357 1.00 0.00 O ATOM 5464 C GLU 381 32.186 20.606 50.155 1.00 0.00 C ATOM 5465 O GLU 381 30.993 20.295 50.229 1.00 0.00 O ATOM 5466 NT GLU 381 32.745 20.934 48.978 1.00 0.00 N ATOM 5468 CAT GLU 381 32.037 20.941 47.722 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 71.61 60.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 90.78 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 67.27 62.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 90.26 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.58 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 84.20 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 58.77 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 85.21 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 58.63 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.87 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 56.53 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 81.46 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 76.61 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 67.97 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.15 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 63.82 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 63.01 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 61.15 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.17 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.17 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.17 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.27 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.27 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2345 CRMSCA SECONDARY STRUCTURE . . 8.18 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.15 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.87 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.30 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.15 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.25 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.57 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.33 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 8.30 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.69 41 100.0 41 CRMSSC SURFACE . . . . . . . . 8.41 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.26 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.84 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.45 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.88 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.57 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.727 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.506 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.623 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.265 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.757 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.561 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.705 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 7.050 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.597 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 7.598 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.099 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 7.634 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 7.158 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.189 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 7.841 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.195 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 7.140 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 9 27 31 31 DISTCA CA (P) 0.00 3.23 6.45 29.03 87.10 31 DISTCA CA (RMS) 0.00 1.35 1.84 4.13 6.19 DISTCA ALL (N) 0 6 11 59 211 253 254 DISTALL ALL (P) 0.00 2.36 4.33 23.23 83.07 254 DISTALL ALL (RMS) 0.00 1.77 2.19 3.96 6.34 DISTALL END of the results output