####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 212), selected 31 , name T0537TS481_1_3-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS481_1_3-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 361 - 375 4.87 10.51 LCS_AVERAGE: 44.43 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.39 19.13 LCS_AVERAGE: 17.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.32 21.33 LCS_AVERAGE: 14.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 6 6 6 6 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT A 352 A 352 6 6 13 6 6 6 6 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT E 353 E 353 6 6 13 6 6 6 6 6 6 8 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT E 354 E 354 6 6 13 6 6 6 6 6 6 7 8 11 13 16 18 19 21 22 22 23 25 25 26 LCS_GDT L 355 L 355 6 6 13 6 6 6 6 6 6 6 10 11 13 14 18 19 21 22 22 23 25 25 26 LCS_GDT G 356 G 356 6 6 13 6 6 6 6 6 6 6 10 11 13 14 18 19 21 22 22 23 25 25 26 LCS_GDT N 357 N 357 3 4 13 3 3 4 4 4 5 8 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT I 358 I 358 3 4 13 3 3 4 4 4 6 6 10 11 13 16 18 19 21 22 22 23 25 25 26 LCS_GDT I 359 I 359 3 3 13 3 3 3 4 5 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT V 360 V 360 3 3 13 3 3 4 4 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT A 361 A 361 3 3 15 2 3 4 4 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT W 362 W 362 6 7 15 3 4 6 6 7 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT N 363 N 363 6 7 15 4 5 6 6 7 7 8 10 12 14 15 17 19 21 22 22 23 25 25 26 LCS_GDT P 364 P 364 6 7 15 4 5 6 6 7 7 7 7 9 11 13 15 15 16 18 22 23 25 25 26 LCS_GDT N 365 N 365 6 7 15 4 5 6 6 7 7 7 7 11 12 12 17 17 21 22 22 23 25 25 26 LCS_GDT L 366 L 366 6 7 15 4 5 6 6 7 7 8 8 9 12 15 17 19 21 22 22 23 25 25 26 LCS_GDT W 367 W 367 6 7 15 3 5 6 6 7 7 7 7 8 10 12 14 15 16 18 20 23 23 25 26 LCS_GDT K 368 K 368 4 7 15 3 4 5 6 7 7 7 7 8 10 12 14 15 16 18 20 23 23 23 24 LCS_GDT K 369 K 369 4 5 15 3 4 5 5 5 5 5 7 8 9 10 12 15 16 18 20 23 23 23 24 LCS_GDT G 370 G 370 4 5 15 3 4 5 5 5 5 5 6 7 10 12 14 15 16 18 20 23 23 23 24 LCS_GDT T 371 T 371 4 5 15 3 4 5 5 5 7 8 9 10 12 13 13 14 16 18 20 23 23 23 26 LCS_GDT N 372 N 372 4 5 15 3 4 5 5 5 7 8 9 10 12 13 13 15 16 18 20 23 23 23 26 LCS_GDT G 373 G 373 4 5 15 3 4 4 5 5 6 6 7 10 12 13 14 15 16 18 20 23 25 25 26 LCS_GDT Y 374 Y 374 4 5 15 3 4 4 5 5 6 6 7 9 12 13 14 15 16 18 20 23 25 25 26 LCS_GDT P 375 P 375 3 5 15 0 3 4 5 5 6 8 9 10 12 13 15 17 20 22 22 23 25 25 26 LCS_GDT I 376 I 376 4 5 12 3 3 4 4 5 7 8 9 12 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT F 377 F 377 4 5 12 3 3 4 4 5 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT Q 378 Q 378 4 5 12 3 3 4 4 5 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT W 379 W 379 4 5 12 3 3 4 4 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT S 380 S 380 3 4 12 3 3 3 3 6 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_GDT E 381 E 381 3 4 12 0 3 3 3 5 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 LCS_AVERAGE LCS_A: 25.39 ( 14.57 17.17 44.43 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 6 6 7 7 10 13 13 14 16 18 19 21 22 22 23 25 25 26 GDT PERCENT_AT 19.35 19.35 19.35 19.35 22.58 22.58 32.26 41.94 41.94 45.16 51.61 58.06 61.29 67.74 70.97 70.97 74.19 80.65 80.65 83.87 GDT RMS_LOCAL 0.32 0.32 0.32 0.32 1.39 1.39 2.70 3.21 3.21 3.53 3.95 4.24 4.44 4.94 5.15 5.15 5.49 6.21 6.21 6.47 GDT RMS_ALL_AT 21.33 21.33 21.33 21.33 19.13 19.13 10.48 10.87 10.87 10.23 11.03 11.14 10.72 10.04 9.84 9.84 9.52 8.94 8.94 8.80 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.072 1 0.606 0.593 4.919 56.786 44.048 LGA A 352 A 352 3.283 0 0.049 0.055 5.708 59.405 51.810 LGA E 353 E 353 3.795 4 0.013 0.015 6.337 37.262 18.466 LGA E 354 E 354 7.423 4 0.022 0.021 9.818 10.952 5.661 LGA L 355 L 355 7.964 3 0.154 0.147 10.102 7.262 4.524 LGA G 356 G 356 6.801 0 0.304 0.304 7.139 13.452 13.452 LGA N 357 N 357 4.236 3 0.588 0.573 5.898 30.357 21.429 LGA I 358 I 358 6.535 3 0.589 0.587 8.833 20.595 10.655 LGA I 359 I 359 3.367 3 0.580 0.579 4.057 52.262 33.274 LGA V 360 V 360 2.515 2 0.612 0.589 4.170 55.952 37.279 LGA A 361 A 361 3.783 0 0.683 0.628 5.864 53.690 47.238 LGA W 362 W 362 3.342 9 0.614 0.580 5.117 43.571 14.320 LGA N 363 N 363 6.735 3 0.269 0.331 9.172 10.952 8.155 LGA P 364 P 364 13.426 2 0.110 0.118 15.512 0.000 0.000 LGA N 365 N 365 11.231 3 0.123 0.125 11.638 0.119 0.060 LGA L 366 L 366 8.239 3 0.019 0.020 11.958 1.905 3.095 LGA W 367 W 367 13.883 9 0.596 0.586 16.002 0.000 0.000 LGA K 368 K 368 19.486 4 0.606 0.595 21.400 0.000 0.000 LGA K 369 K 369 21.050 4 0.582 0.570 21.719 0.000 0.000 LGA G 370 G 370 21.576 0 0.098 0.098 21.576 0.000 0.000 LGA T 371 T 371 21.256 2 0.649 0.611 22.547 0.000 0.000 LGA N 372 N 372 20.668 3 0.667 0.642 21.954 0.000 0.000 LGA G 373 G 373 15.280 0 0.052 0.052 16.989 0.000 0.000 LGA Y 374 Y 374 13.845 7 0.619 0.581 15.715 0.000 0.000 LGA P 375 P 375 8.888 2 0.631 0.596 10.917 6.548 4.150 LGA I 376 I 376 5.958 3 0.582 0.588 8.149 36.667 18.929 LGA F 377 F 377 3.215 6 0.091 0.111 5.864 56.429 22.468 LGA Q 378 Q 378 3.229 4 0.633 0.583 6.018 55.476 26.561 LGA W 379 W 379 1.595 9 0.139 0.145 2.596 71.071 24.932 LGA S 380 S 380 1.876 1 0.587 0.564 4.023 73.690 55.317 LGA E 381 E 381 3.358 5 0.521 0.527 5.771 63.214 27.429 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 152 59.84 31 SUMMARY(RMSD_GDC): 8.132 8.112 8.224 26.375 15.911 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 3.21 37.903 32.122 0.393 LGA_LOCAL RMSD: 3.208 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.867 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.132 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.396926 * X + 0.768237 * Y + -0.502256 * Z + 26.336760 Y_new = 0.022253 * X + 0.555103 * Y + 0.831484 * Z + 20.094410 Z_new = 0.917581 * X + 0.318861 * Y + -0.237431 * Z + 64.347321 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.085587 -1.161952 2.210847 [DEG: 176.7911 -66.5749 126.6722 ] ZXZ: -2.598202 1.810516 1.236349 [DEG: -148.8660 103.7350 70.8376 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS481_1_3-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS481_1_3-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 3.21 32.122 8.13 REMARK ---------------------------------------------------------- MOLECULE T0537TS481_1_3-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0537 REMARK PARENT N/A ATOM 2390 N SER 351 8.146 15.928 49.927 1.00 0.00 N ATOM 2391 CA SER 351 7.104 15.010 50.369 1.00 0.00 C ATOM 2392 C SER 351 7.057 14.921 51.889 1.00 0.00 C ATOM 2393 O SER 351 5.981 14.904 52.488 1.00 0.00 O ATOM 2394 CB SER 351 7.327 13.636 49.767 1.00 0.00 C ATOM 2395 CEN SER 351 7.594 13.202 49.578 1.00 0.00 C ATOM 2396 H SER 351 8.961 15.558 49.459 1.00 0.00 H ATOM 2397 N ALA 352 8.231 14.865 52.510 1.00 0.00 N ATOM 2398 CA ALA 352 8.325 14.785 53.962 1.00 0.00 C ATOM 2399 C ALA 352 7.742 16.027 54.624 1.00 0.00 C ATOM 2400 O ALA 352 7.188 15.956 55.720 1.00 0.00 O ATOM 2401 CB ALA 352 9.773 14.585 54.388 1.00 0.00 C ATOM 2402 CEN ALA 352 9.772 14.586 54.389 1.00 0.00 C ATOM 2403 H ALA 352 9.079 14.879 51.961 1.00 0.00 H ATOM 2404 N GLU 353 7.868 17.164 53.948 1.00 0.00 N ATOM 2405 CA GLU 353 7.362 18.427 54.473 1.00 0.00 C ATOM 2406 C GLU 353 5.849 18.389 54.638 1.00 0.00 C ATOM 2407 O GLU 353 5.315 18.827 55.657 1.00 0.00 O ATOM 2408 CB GLU 353 7.763 19.586 53.558 1.00 0.00 C ATOM 2409 CEN GLU 353 8.795 20.892 53.193 1.00 0.00 C ATOM 2410 H GLU 353 8.326 17.154 53.047 1.00 0.00 H ATOM 2411 N GLU 354 5.162 17.861 53.631 1.00 0.00 N ATOM 2412 CA GLU 354 3.714 17.704 53.691 1.00 0.00 C ATOM 2413 C GLU 354 3.307 16.788 54.838 1.00 0.00 C ATOM 2414 O GLU 354 2.304 17.028 55.510 1.00 0.00 O ATOM 2415 CB GLU 354 3.180 17.156 52.366 1.00 0.00 C ATOM 2416 CEN GLU 354 2.442 17.413 50.851 1.00 0.00 C ATOM 2417 H GLU 354 5.655 17.563 52.801 1.00 0.00 H ATOM 2418 N LEU 355 4.091 15.738 55.056 1.00 0.00 N ATOM 2419 CA LEU 355 3.793 14.765 56.101 1.00 0.00 C ATOM 2420 C LEU 355 4.371 15.202 57.441 1.00 0.00 C ATOM 2421 O LEU 355 4.079 14.606 58.478 1.00 0.00 O ATOM 2422 CB LEU 355 4.338 13.385 55.710 1.00 0.00 C ATOM 2423 CEN LEU 355 3.660 12.103 55.190 1.00 0.00 C ATOM 2424 H LEU 355 4.913 15.610 54.485 1.00 0.00 H ATOM 2425 N GLY 356 5.192 16.247 57.414 1.00 0.00 N ATOM 2426 CA GLY 356 5.847 16.738 58.620 1.00 0.00 C ATOM 2427 C GLY 356 7.059 15.886 58.975 1.00 0.00 C ATOM 2428 O GLY 356 7.563 15.944 60.097 1.00 0.00 O ATOM 2429 CEN GLY 356 5.847 16.738 58.621 1.00 0.00 C ATOM 2430 H GLY 356 5.367 16.711 56.535 1.00 0.00 H ATOM 2431 N ASN 357 7.523 15.097 58.013 1.00 0.00 N ATOM 2432 CA ASN 357 8.587 14.131 58.260 1.00 0.00 C ATOM 2433 C ASN 357 9.959 14.790 58.169 1.00 0.00 C ATOM 2434 O ASN 357 10.211 15.602 57.279 1.00 0.00 O ATOM 2435 CB ASN 357 8.505 12.957 57.303 1.00 0.00 C ATOM 2436 CEN ASN 357 8.075 11.999 57.275 1.00 0.00 C ATOM 2437 H ASN 357 7.128 15.166 57.086 1.00 0.00 H ATOM 2438 N ILE 358 10.842 14.433 59.095 1.00 0.00 N ATOM 2439 CA ILE 358 12.241 14.837 59.016 1.00 0.00 C ATOM 2440 C ILE 358 13.047 13.867 58.161 1.00 0.00 C ATOM 2441 O ILE 358 12.971 12.653 58.345 1.00 0.00 O ATOM 2442 CB ILE 358 12.882 14.931 60.412 1.00 0.00 C ATOM 2443 CEN ILE 358 13.043 15.572 61.280 1.00 0.00 C ATOM 2444 H ILE 358 10.537 13.868 59.875 1.00 0.00 H ATOM 2445 N ILE 359 13.818 14.411 57.226 1.00 0.00 N ATOM 2446 CA ILE 359 14.577 13.594 56.288 1.00 0.00 C ATOM 2447 C ILE 359 16.051 13.545 56.665 1.00 0.00 C ATOM 2448 O ILE 359 16.752 14.555 56.598 1.00 0.00 O ATOM 2449 CB ILE 359 14.443 14.116 54.845 1.00 0.00 C ATOM 2450 CEN ILE 359 13.838 14.088 53.939 1.00 0.00 C ATOM 2451 H ILE 359 13.881 15.417 57.163 1.00 0.00 H ATOM 2452 N VAL 360 16.516 12.366 57.063 1.00 0.00 N ATOM 2453 CA VAL 360 17.947 12.114 57.202 1.00 0.00 C ATOM 2454 C VAL 360 18.498 11.387 55.982 1.00 0.00 C ATOM 2455 O VAL 360 17.900 10.427 55.497 1.00 0.00 O ATOM 2456 CB VAL 360 18.255 11.286 58.463 1.00 0.00 C ATOM 2457 CEN VAL 360 18.534 11.318 59.092 1.00 0.00 C ATOM 2458 H VAL 360 15.864 11.625 57.276 1.00 0.00 H ATOM 2459 N ALA 361 19.641 11.850 55.490 1.00 0.00 N ATOM 2460 CA ALA 361 20.234 11.298 54.278 1.00 0.00 C ATOM 2461 C ALA 361 21.604 10.696 54.559 1.00 0.00 C ATOM 2462 O ALA 361 22.289 11.100 55.499 1.00 0.00 O ATOM 2463 CB ALA 361 20.334 12.369 53.202 1.00 0.00 C ATOM 2464 CEN ALA 361 20.334 12.368 53.202 1.00 0.00 C ATOM 2465 H ALA 361 20.112 12.605 55.969 1.00 0.00 H ATOM 2466 N TRP 362 21.999 9.728 53.740 1.00 0.00 N ATOM 2467 CA TRP 362 23.310 9.102 53.869 1.00 0.00 C ATOM 2468 C TRP 362 24.193 9.420 52.669 1.00 0.00 C ATOM 2469 O TRP 362 23.895 9.022 51.544 1.00 0.00 O ATOM 2470 CB TRP 362 23.164 7.586 54.026 1.00 0.00 C ATOM 2471 CEN TRP 362 23.478 6.273 55.142 1.00 0.00 C ATOM 2472 H TRP 362 21.375 9.417 53.009 1.00 0.00 H ATOM 2473 N ASN 363 25.281 10.140 52.918 1.00 0.00 N ATOM 2474 CA ASN 363 26.199 10.532 51.855 1.00 0.00 C ATOM 2475 C ASN 363 27.595 9.972 52.097 1.00 0.00 C ATOM 2476 O ASN 363 27.947 9.622 53.225 1.00 0.00 O ATOM 2477 CB ASN 363 26.260 12.041 51.702 1.00 0.00 C ATOM 2478 CEN ASN 363 25.787 12.789 51.137 1.00 0.00 C ATOM 2479 H ASN 363 25.478 10.423 53.867 1.00 0.00 H ATOM 2480 N PRO 364 28.387 9.889 51.034 1.00 0.00 N ATOM 2481 CA PRO 364 29.747 9.372 51.131 1.00 0.00 C ATOM 2482 C PRO 364 30.573 10.177 52.127 1.00 0.00 C ATOM 2483 O PRO 364 31.416 9.629 52.836 1.00 0.00 O ATOM 2484 CB PRO 364 30.295 9.487 49.698 1.00 0.00 C ATOM 2485 CEN PRO 364 28.704 10.218 49.353 1.00 0.00 C ATOM 2486 N ASN 365 30.325 11.482 52.175 1.00 0.00 N ATOM 2487 CA ASN 365 31.073 12.373 53.054 1.00 0.00 C ATOM 2488 C ASN 365 30.674 12.171 54.510 1.00 0.00 C ATOM 2489 O ASN 365 31.517 12.207 55.406 1.00 0.00 O ATOM 2490 CB ASN 365 30.892 13.825 52.657 1.00 0.00 C ATOM 2491 CEN ASN 365 31.371 14.536 52.052 1.00 0.00 C ATOM 2492 H ASN 365 29.599 11.867 51.587 1.00 0.00 H ATOM 2493 N LEU 366 29.383 11.956 54.741 1.00 0.00 N ATOM 2494 CA LEU 366 28.872 11.729 56.087 1.00 0.00 C ATOM 2495 C LEU 366 29.414 10.429 56.669 1.00 0.00 C ATOM 2496 O LEU 366 29.853 10.387 57.819 1.00 0.00 O ATOM 2497 CB LEU 366 27.338 11.710 56.077 1.00 0.00 C ATOM 2498 CEN LEU 366 26.278 12.736 56.519 1.00 0.00 C ATOM 2499 H LEU 366 28.739 11.951 53.963 1.00 0.00 H ATOM 2500 N TRP 367 29.381 9.369 55.868 1.00 0.00 N ATOM 2501 CA TRP 367 29.867 8.066 56.303 1.00 0.00 C ATOM 2502 C TRP 367 31.343 8.125 56.677 1.00 0.00 C ATOM 2503 O TRP 367 31.764 7.547 57.679 1.00 0.00 O ATOM 2504 CB TRP 367 29.646 7.021 55.207 1.00 0.00 C ATOM 2505 CEN TRP 367 28.788 5.531 54.868 1.00 0.00 C ATOM 2506 H TRP 367 29.008 9.469 54.935 1.00 0.00 H ATOM 2507 N LYS 368 32.126 8.827 55.865 1.00 0.00 N ATOM 2508 CA LYS 368 33.552 8.986 56.123 1.00 0.00 C ATOM 2509 C LYS 368 33.796 9.753 57.416 1.00 0.00 C ATOM 2510 O LYS 368 34.669 9.395 58.207 1.00 0.00 O ATOM 2511 CB LYS 368 34.233 9.698 54.952 1.00 0.00 C ATOM 2512 CEN LYS 368 35.457 9.585 53.231 1.00 0.00 C ATOM 2513 H LYS 368 31.723 9.262 55.047 1.00 0.00 H ATOM 2514 N LYS 369 33.019 10.811 57.624 1.00 0.00 N ATOM 2515 CA LYS 369 33.148 11.631 58.824 1.00 0.00 C ATOM 2516 C LYS 369 31.881 11.572 59.669 1.00 0.00 C ATOM 2517 O LYS 369 31.647 12.436 60.515 1.00 0.00 O ATOM 2518 CB LYS 369 33.465 13.079 58.452 1.00 0.00 C ATOM 2519 CEN LYS 369 34.885 14.641 58.305 1.00 0.00 C ATOM 2520 H LYS 369 32.322 11.055 56.935 1.00 0.00 H ATOM 2521 N GLY 370 31.067 10.548 59.436 1.00 0.00 N ATOM 2522 CA GLY 370 29.848 10.348 60.209 1.00 0.00 C ATOM 2523 C GLY 370 28.702 11.188 59.659 1.00 0.00 C ATOM 2524 O GLY 370 28.855 11.881 58.652 1.00 0.00 O ATOM 2525 CEN GLY 370 29.847 10.347 60.208 1.00 0.00 C ATOM 2526 H GLY 370 31.299 9.892 58.703 1.00 0.00 H ATOM 2527 N THR 371 27.555 11.123 60.325 1.00 0.00 N ATOM 2528 CA THR 371 26.398 11.922 59.938 1.00 0.00 C ATOM 2529 C THR 371 25.673 12.471 61.161 1.00 0.00 C ATOM 2530 O THR 371 25.595 11.810 62.196 1.00 0.00 O ATOM 2531 CB THR 371 25.405 11.104 59.090 1.00 0.00 C ATOM 2532 CEN THR 371 25.272 10.788 58.618 1.00 0.00 C ATOM 2533 H THR 371 27.482 10.504 61.120 1.00 0.00 H ATOM 2534 N ASN 372 25.144 13.682 61.034 1.00 0.00 N ATOM 2535 CA ASN 372 24.500 14.359 62.154 1.00 0.00 C ATOM 2536 C ASN 372 23.333 15.216 61.682 1.00 0.00 C ATOM 2537 O ASN 372 23.201 15.501 60.492 1.00 0.00 O ATOM 2538 CB ASN 372 25.490 15.203 62.936 1.00 0.00 C ATOM 2539 CEN ASN 372 26.118 15.100 63.770 1.00 0.00 C ATOM 2540 H ASN 372 25.191 14.149 60.139 1.00 0.00 H ATOM 2541 N GLY 373 22.487 15.624 62.623 1.00 0.00 N ATOM 2542 CA GLY 373 21.223 16.268 62.288 1.00 0.00 C ATOM 2543 C GLY 373 21.453 17.587 61.562 1.00 0.00 C ATOM 2544 O GLY 373 20.520 18.172 61.008 1.00 0.00 O ATOM 2545 CEN GLY 373 21.223 16.269 62.288 1.00 0.00 C ATOM 2546 H GLY 373 22.727 15.485 63.594 1.00 0.00 H ATOM 2547 N TYR 374 22.697 18.052 61.568 1.00 0.00 N ATOM 2548 CA TYR 374 23.088 19.204 60.765 1.00 0.00 C ATOM 2549 C TYR 374 22.835 18.954 59.283 1.00 0.00 C ATOM 2550 O TYR 374 22.423 19.856 58.554 1.00 0.00 O ATOM 2551 CB TYR 374 24.563 19.540 60.994 1.00 0.00 C ATOM 2552 CEN TYR 374 25.567 20.658 61.897 1.00 0.00 C ATOM 2553 H TYR 374 23.389 17.596 62.143 1.00 0.00 H ATOM 2554 N PRO 375 23.082 17.725 58.845 1.00 0.00 N ATOM 2555 CA PRO 375 22.868 17.350 57.452 1.00 0.00 C ATOM 2556 C PRO 375 21.424 17.595 57.032 1.00 0.00 C ATOM 2557 O PRO 375 21.149 17.907 55.873 1.00 0.00 O ATOM 2558 CB PRO 375 23.241 15.860 57.401 1.00 0.00 C ATOM 2559 CEN PRO 375 23.506 16.063 59.155 1.00 0.00 C ATOM 2560 N ILE 376 20.505 17.450 57.981 1.00 0.00 N ATOM 2561 CA ILE 376 19.090 17.686 57.719 1.00 0.00 C ATOM 2562 C ILE 376 18.797 19.172 57.566 1.00 0.00 C ATOM 2563 O ILE 376 18.019 19.576 56.702 1.00 0.00 O ATOM 2564 CB ILE 376 18.205 17.110 58.839 1.00 0.00 C ATOM 2565 CEN ILE 376 17.696 16.219 59.205 1.00 0.00 C ATOM 2566 H ILE 376 20.794 17.171 58.907 1.00 0.00 H ATOM 2567 N PHE 377 19.427 19.984 58.410 1.00 0.00 N ATOM 2568 CA PHE 377 19.259 21.431 58.351 1.00 0.00 C ATOM 2569 C PHE 377 20.593 22.133 58.134 1.00 0.00 C ATOM 2570 O PHE 377 21.585 21.818 58.793 1.00 0.00 O ATOM 2571 CB PHE 377 18.596 21.944 59.631 1.00 0.00 C ATOM 2572 CEN PHE 377 17.147 22.360 60.134 1.00 0.00 C ATOM 2573 H PHE 377 20.038 19.588 59.110 1.00 0.00 H ATOM 2574 N GLN 378 20.611 23.085 57.208 1.00 0.00 N ATOM 2575 CA GLN 378 21.777 23.937 57.008 1.00 0.00 C ATOM 2576 C GLN 378 21.719 25.169 57.905 1.00 0.00 C ATOM 2577 O GLN 378 20.720 25.886 57.925 1.00 0.00 O ATOM 2578 CB GLN 378 21.881 24.370 55.543 1.00 0.00 C ATOM 2579 CEN GLN 378 22.686 24.059 54.025 1.00 0.00 C ATOM 2580 H GLN 378 19.797 23.222 56.627 1.00 0.00 H ATOM 2581 N TRP 379 22.797 25.407 58.644 1.00 0.00 N ATOM 2582 CA TRP 379 22.883 26.570 59.520 1.00 0.00 C ATOM 2583 C TRP 379 22.813 27.866 58.722 1.00 0.00 C ATOM 2584 O TRP 379 22.428 28.909 59.250 1.00 0.00 O ATOM 2585 CB TRP 379 24.175 26.526 60.338 1.00 0.00 C ATOM 2586 CEN TRP 379 24.770 26.427 61.984 1.00 0.00 C ATOM 2587 H TRP 379 23.576 24.766 58.599 1.00 0.00 H ATOM 2588 N SER 380 23.186 27.792 57.449 1.00 0.00 N ATOM 2589 CA SER 380 23.190 28.965 56.583 1.00 0.00 C ATOM 2590 C SER 380 21.899 29.062 55.781 1.00 0.00 C ATOM 2591 O SER 380 21.820 29.802 54.802 1.00 0.00 O ATOM 2592 CB SER 380 24.388 28.924 55.654 1.00 0.00 C ATOM 2593 CEN SER 380 24.774 28.716 55.332 1.00 0.00 C ATOM 2594 H SER 380 23.475 26.901 57.072 1.00 0.00 H ATOM 2595 N GLU 381 20.888 28.310 56.204 1.00 0.00 N ATOM 2596 CA GLU 381 19.566 28.391 55.595 1.00 0.00 C ATOM 2597 C GLU 381 18.499 28.709 56.634 1.00 0.00 C ATOM 2598 O GLU 381 17.946 29.538 56.545 1.00 0.00 O ATOM 2599 CB GLU 381 19.227 27.082 54.876 1.00 0.00 C ATOM 2600 CEN GLU 381 19.125 26.169 53.441 1.00 0.00 C ATOM 2601 H GLU 381 21.040 27.665 56.967 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 152 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 97.11 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 96.87 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.75 40.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 120.37 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.13 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.13 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2623 CRMSCA SECONDARY STRUCTURE . . 7.41 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.20 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.79 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.23 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.57 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.36 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.46 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.68 28 21.5 130 CRMSSC RELIABLE SIDE CHAINS . 8.68 28 24.6 114 CRMSSC SECONDARY STRUCTURE . . 7.57 10 24.4 41 CRMSSC SURFACE . . . . . . . . 9.08 25 20.8 120 CRMSSC BURIED . . . . . . . . 3.99 3 30.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.23 152 59.8 254 CRMSALL SECONDARY STRUCTURE . . 7.57 54 63.5 85 CRMSALL SURFACE . . . . . . . . 8.36 129 57.6 224 CRMSALL BURIED . . . . . . . . 7.46 23 76.7 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.605 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.060 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.731 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 6.948 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.680 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.201 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.871 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 6.610 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.157 1.000 0.500 28 21.5 130 ERRSC RELIABLE SIDE CHAINS . 8.157 1.000 0.500 28 24.6 114 ERRSC SECONDARY STRUCTURE . . 7.148 1.000 0.500 10 24.4 41 ERRSC SURFACE . . . . . . . . 8.662 1.000 0.500 25 20.8 120 ERRSC BURIED . . . . . . . . 3.949 1.000 0.500 3 30.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.680 1.000 0.500 152 59.8 254 ERRALL SECONDARY STRUCTURE . . 7.201 1.000 0.500 54 63.5 85 ERRALL SURFACE . . . . . . . . 7.871 1.000 0.500 129 57.6 224 ERRALL BURIED . . . . . . . . 6.610 1.000 0.500 23 76.7 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 24 31 31 DISTCA CA (P) 0.00 0.00 3.23 22.58 77.42 31 DISTCA CA (RMS) 0.00 0.00 2.69 3.79 6.89 DISTCA ALL (N) 0 0 5 35 112 152 254 DISTALL ALL (P) 0.00 0.00 1.97 13.78 44.09 254 DISTALL ALL (RMS) 0.00 0.00 2.53 3.88 6.72 DISTALL END of the results output