####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS477_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS477_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 358 - 375 4.81 9.54 LONGEST_CONTINUOUS_SEGMENT: 18 359 - 376 4.89 9.84 LCS_AVERAGE: 54.32 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 363 - 371 1.71 11.35 LCS_AVERAGE: 21.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 361 - 365 0.97 13.49 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.96 13.97 LONGEST_CONTINUOUS_SEGMENT: 5 376 - 380 0.92 18.13 LONGEST_CONTINUOUS_SEGMENT: 5 377 - 381 0.99 18.11 LCS_AVERAGE: 13.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 12 3 3 3 6 8 11 12 13 14 17 19 19 20 21 22 23 23 26 26 26 LCS_GDT A 352 A 352 3 4 16 3 3 3 3 4 4 8 11 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT E 353 E 353 3 4 16 3 3 3 3 4 6 10 11 14 15 19 19 20 21 22 23 24 26 26 26 LCS_GDT E 354 E 354 3 4 16 3 3 3 3 4 6 8 11 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT L 355 L 355 3 4 16 3 3 4 4 4 6 8 10 14 15 19 19 20 21 22 23 24 26 26 26 LCS_GDT G 356 G 356 3 4 16 3 3 4 4 4 5 5 8 9 10 11 15 16 18 18 23 24 26 26 26 LCS_GDT N 357 N 357 3 4 16 3 3 4 4 4 5 5 6 9 9 11 15 16 18 18 23 24 26 26 26 LCS_GDT I 358 I 358 3 4 18 3 3 4 4 4 6 7 8 14 15 17 19 20 21 22 23 24 26 26 26 LCS_GDT I 359 I 359 3 4 18 3 3 3 3 4 5 6 8 9 11 11 12 14 17 18 23 24 26 26 26 LCS_GDT V 360 V 360 3 4 18 3 3 3 3 4 5 7 8 9 11 12 16 19 21 22 23 24 26 26 26 LCS_GDT A 361 A 361 5 7 18 3 4 5 5 8 10 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT W 362 W 362 5 7 18 3 4 5 5 7 10 11 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT N 363 N 363 5 9 18 3 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT P 364 P 364 5 9 18 3 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT N 365 N 365 5 9 18 3 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT L 366 L 366 4 9 18 3 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT W 367 W 367 4 9 18 3 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT K 368 K 368 4 9 18 3 3 5 6 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT K 369 K 369 3 9 18 2 3 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT G 370 G 370 3 9 18 2 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT T 371 T 371 4 9 18 3 3 6 6 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT N 372 N 372 5 7 18 4 4 6 6 7 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT G 373 G 373 5 7 18 4 4 6 6 7 10 11 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT Y 374 Y 374 5 7 18 4 4 6 6 7 10 11 13 14 17 19 19 20 21 22 23 24 26 26 26 LCS_GDT P 375 P 375 5 7 18 4 4 6 6 6 7 10 11 13 13 15 15 18 21 22 23 24 26 26 26 LCS_GDT I 376 I 376 5 7 18 0 3 6 6 7 9 10 11 13 13 15 15 18 21 22 23 24 26 26 26 LCS_GDT F 377 F 377 5 7 16 3 4 6 6 7 9 10 11 11 11 12 14 14 16 16 18 19 19 20 20 LCS_GDT Q 378 Q 378 5 7 14 3 4 6 6 7 9 10 11 11 11 12 12 14 15 15 18 19 19 20 21 LCS_GDT W 379 W 379 5 7 14 3 4 6 6 7 9 10 11 11 11 12 15 15 16 16 18 19 19 20 20 LCS_GDT S 380 S 380 5 7 14 1 4 6 6 7 9 10 11 11 12 13 15 15 16 16 18 19 19 20 20 LCS_GDT E 381 E 381 5 7 14 0 0 6 6 7 9 10 11 11 11 12 14 15 16 16 18 19 19 20 20 LCS_AVERAGE LCS_A: 29.62 ( 13.22 21.33 54.32 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 6 7 8 11 12 13 14 17 19 19 20 21 22 23 24 26 26 26 GDT PERCENT_AT 12.90 12.90 19.35 22.58 25.81 35.48 38.71 41.94 45.16 54.84 61.29 61.29 64.52 67.74 70.97 74.19 77.42 83.87 83.87 83.87 GDT RMS_LOCAL 0.22 0.22 1.04 1.21 1.48 2.23 2.38 2.60 2.87 3.52 3.89 3.89 4.14 4.42 4.64 4.92 5.69 5.84 5.84 5.84 GDT RMS_ALL_AT 14.11 14.11 11.31 11.30 11.22 10.73 10.62 10.57 10.49 9.95 9.67 9.67 9.53 9.40 9.29 9.13 8.69 8.78 8.78 8.78 # Checking swapping # possible swapping detected: E 353 E 353 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.956 0 0.501 0.761 5.420 49.762 44.762 LGA A 352 A 352 6.531 0 0.435 0.401 8.703 17.381 14.857 LGA E 353 E 353 6.932 0 0.605 0.927 10.336 17.262 10.000 LGA E 354 E 354 6.130 0 0.629 0.798 7.568 13.690 15.608 LGA L 355 L 355 8.386 0 0.635 0.972 11.100 3.690 7.679 LGA G 356 G 356 14.293 0 0.310 0.310 15.689 0.000 0.000 LGA N 357 N 357 13.634 0 0.440 0.565 16.766 0.000 0.000 LGA I 358 I 358 9.244 0 0.505 0.997 10.655 0.357 4.762 LGA I 359 I 359 13.184 0 0.325 0.778 19.380 0.000 0.000 LGA V 360 V 360 9.930 0 0.530 0.541 13.127 3.690 2.177 LGA A 361 A 361 3.671 0 0.615 0.563 5.449 39.048 42.667 LGA W 362 W 362 5.806 0 0.184 1.274 17.827 26.310 8.095 LGA N 363 N 363 1.881 0 0.362 1.237 3.451 75.952 71.607 LGA P 364 P 364 1.268 0 0.101 0.111 1.953 81.786 81.701 LGA N 365 N 365 1.532 0 0.261 0.427 1.532 81.548 80.417 LGA L 366 L 366 2.638 0 0.302 0.298 6.329 73.452 50.893 LGA W 367 W 367 1.102 0 0.671 0.992 11.661 62.857 28.639 LGA K 368 K 368 3.012 0 0.253 0.847 4.534 61.071 50.688 LGA K 369 K 369 2.473 0 0.172 0.558 3.917 62.857 57.354 LGA G 370 G 370 3.179 0 0.352 0.352 3.179 55.357 55.357 LGA T 371 T 371 2.799 0 0.415 0.629 4.171 61.071 53.537 LGA N 372 N 372 2.230 0 0.684 1.399 5.562 68.929 54.345 LGA G 373 G 373 4.068 0 0.355 0.355 5.435 34.524 34.524 LGA Y 374 Y 374 6.011 0 0.619 1.343 13.160 14.286 8.690 LGA P 375 P 375 9.306 0 0.593 0.594 12.656 1.548 1.293 LGA I 376 I 376 11.508 0 0.470 0.439 13.525 0.000 0.060 LGA F 377 F 377 17.957 0 0.219 0.991 23.633 0.000 0.000 LGA Q 378 Q 378 18.025 0 0.066 1.514 19.396 0.000 0.000 LGA W 379 W 379 22.822 0 0.135 1.196 27.345 0.000 0.000 LGA S 380 S 380 20.734 0 0.491 0.758 22.488 0.000 0.000 LGA E 381 E 381 23.288 0 0.472 1.331 30.447 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.322 8.307 9.925 29.240 25.152 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.60 37.903 35.568 0.482 LGA_LOCAL RMSD: 2.596 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.570 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.322 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.625932 * X + -0.146628 * Y + 0.765970 * Z + 29.061337 Y_new = 0.016551 * X + 0.979447 * Y + 0.201019 * Z + -38.241646 Z_new = -0.779702 * X + 0.138502 * Y + -0.610641 * Z + 102.824196 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.115156 0.894190 2.918552 [DEG: 178.4853 51.2333 167.2207 ] ZXZ: 1.827446 2.227666 -1.394995 [DEG: 104.7050 127.6358 -79.9273 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS477_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS477_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.60 35.568 8.32 REMARK ---------------------------------------------------------- MOLECULE T0537TS477_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 3113 N SER 351 5.002 15.386 50.298 1.00 50.00 N ATOM 3114 CA SER 351 3.651 14.850 50.387 1.00 50.00 C ATOM 3115 C SER 351 2.820 13.661 49.934 1.00 50.00 C ATOM 3116 O SER 351 1.948 13.636 49.067 1.00 50.00 O ATOM 3117 H SER 351 5.561 15.090 49.658 1.00 50.00 H ATOM 3118 CB SER 351 2.638 15.856 49.836 1.00 50.00 C ATOM 3119 HG SER 351 1.162 15.280 50.820 1.00 50.00 H ATOM 3120 OG SER 351 1.312 15.392 50.011 1.00 50.00 O ATOM 3121 N ALA 352 3.065 12.503 50.552 1.00 50.00 N ATOM 3122 CA ALA 352 2.605 11.236 50.290 1.00 50.00 C ATOM 3123 C ALA 352 3.867 10.447 49.951 1.00 50.00 C ATOM 3124 O ALA 352 4.075 9.763 48.950 1.00 50.00 O ATOM 3125 H ALA 352 3.627 12.644 51.239 1.00 50.00 H ATOM 3126 CB ALA 352 1.579 11.266 49.167 1.00 50.00 C ATOM 3127 N GLU 353 4.872 10.507 50.853 1.00 50.00 N ATOM 3128 CA GLU 353 6.110 9.925 50.573 1.00 50.00 C ATOM 3129 C GLU 353 6.009 8.756 51.545 1.00 50.00 C ATOM 3130 O GLU 353 5.912 8.787 52.771 1.00 50.00 O ATOM 3131 H GLU 353 4.738 10.925 51.638 1.00 50.00 H ATOM 3132 CB GLU 353 7.239 10.928 50.812 1.00 50.00 C ATOM 3133 CD GLU 353 8.346 13.098 50.144 1.00 50.00 C ATOM 3134 CG GLU 353 7.216 12.125 49.875 1.00 50.00 C ATOM 3135 OE1 GLU 353 8.927 13.044 51.249 1.00 50.00 O ATOM 3136 OE2 GLU 353 8.651 13.917 49.252 1.00 50.00 O ATOM 3137 N GLU 354 6.026 7.549 51.007 1.00 50.00 N ATOM 3138 CA GLU 354 5.918 6.370 51.821 1.00 50.00 C ATOM 3139 C GLU 354 7.299 5.821 51.534 1.00 50.00 C ATOM 3140 O GLU 354 7.773 5.498 50.445 1.00 50.00 O ATOM 3141 H GLU 354 6.108 7.473 50.114 1.00 50.00 H ATOM 3142 CB GLU 354 4.723 5.522 51.380 1.00 50.00 C ATOM 3143 CD GLU 354 3.290 3.480 51.776 1.00 50.00 C ATOM 3144 CG GLU 354 4.504 4.273 52.219 1.00 50.00 C ATOM 3145 OE1 GLU 354 2.530 3.984 50.922 1.00 50.00 O ATOM 3146 OE2 GLU 354 3.098 2.356 52.285 1.00 50.00 O ATOM 3147 N LEU 355 8.094 5.672 52.597 1.00 50.00 N ATOM 3148 CA LEU 355 9.430 5.233 52.516 1.00 50.00 C ATOM 3149 C LEU 355 9.276 3.922 53.264 1.00 50.00 C ATOM 3150 O LEU 355 8.787 3.747 54.380 1.00 50.00 O ATOM 3151 H LEU 355 7.733 5.869 53.398 1.00 50.00 H ATOM 3152 CB LEU 355 10.373 6.268 53.134 1.00 50.00 C ATOM 3153 CG LEU 355 10.613 7.540 52.317 1.00 50.00 C ATOM 3154 CD1 LEU 355 9.408 8.464 52.395 1.00 50.00 C ATOM 3155 CD2 LEU 355 11.864 8.259 52.798 1.00 50.00 C ATOM 3156 N GLY 356 9.718 2.823 52.650 1.00 50.00 N ATOM 3157 CA GLY 356 9.783 1.577 53.300 1.00 50.00 C ATOM 3158 C GLY 356 10.306 0.426 54.103 1.00 50.00 C ATOM 3159 O GLY 356 9.690 -0.312 54.870 1.00 50.00 O ATOM 3160 H GLY 356 9.980 2.897 51.793 1.00 50.00 H ATOM 3161 N ASN 357 11.639 0.244 53.897 1.00 50.00 N ATOM 3162 CA ASN 357 12.350 -0.958 54.340 1.00 50.00 C ATOM 3163 C ASN 357 13.591 -0.138 54.679 1.00 50.00 C ATOM 3164 O ASN 357 14.756 -0.410 54.394 1.00 50.00 O ATOM 3165 H ASN 357 12.084 0.899 53.470 1.00 50.00 H ATOM 3166 CB ASN 357 12.394 -1.998 53.220 1.00 50.00 C ATOM 3167 CG ASN 357 11.019 -2.523 52.857 1.00 50.00 C ATOM 3168 OD1 ASN 357 10.469 -3.380 53.548 1.00 50.00 O ATOM 3169 HD21 ASN 357 9.641 -2.282 51.511 1.00 50.00 H ATOM 3170 HD22 ASN 357 10.893 -1.380 51.294 1.00 50.00 H ATOM 3171 ND2 ASN 357 10.457 -2.006 51.771 1.00 50.00 N ATOM 3172 N ILE 358 13.454 1.005 55.353 1.00 50.00 N ATOM 3173 CA ILE 358 14.607 1.752 55.669 1.00 50.00 C ATOM 3174 C ILE 358 15.589 1.475 56.784 1.00 50.00 C ATOM 3175 O ILE 358 15.340 1.291 57.975 1.00 50.00 O ATOM 3176 H ILE 358 12.642 1.302 55.606 1.00 50.00 H ATOM 3177 CB ILE 358 14.265 3.227 55.951 1.00 50.00 C ATOM 3178 CD1 ILE 358 15.307 5.552 56.026 1.00 50.00 C ATOM 3179 CG1 ILE 358 15.544 4.059 56.063 1.00 50.00 C ATOM 3180 CG2 ILE 358 13.402 3.344 57.198 1.00 50.00 C ATOM 3181 N ILE 359 16.872 1.422 56.451 1.00 50.00 N ATOM 3182 CA ILE 359 17.902 1.418 57.465 1.00 50.00 C ATOM 3183 C ILE 359 18.474 2.544 58.298 1.00 50.00 C ATOM 3184 O ILE 359 19.422 2.492 59.080 1.00 50.00 O ATOM 3185 H ILE 359 17.098 1.389 55.581 1.00 50.00 H ATOM 3186 CB ILE 359 19.227 0.851 56.921 1.00 50.00 C ATOM 3187 CD1 ILE 359 18.601 -1.528 57.590 1.00 50.00 C ATOM 3188 CG1 ILE 359 19.043 -0.602 56.478 1.00 50.00 C ATOM 3189 CG2 ILE 359 20.332 0.992 57.957 1.00 50.00 C ATOM 3190 N VAL 360 17.955 3.733 58.229 1.00 50.00 N ATOM 3191 CA VAL 360 18.546 4.864 58.860 1.00 50.00 C ATOM 3192 C VAL 360 19.624 5.798 58.371 1.00 50.00 C ATOM 3193 O VAL 360 20.827 5.546 58.320 1.00 50.00 O ATOM 3194 H VAL 360 17.192 3.827 57.760 1.00 50.00 H ATOM 3195 CB VAL 360 19.166 4.491 60.219 1.00 50.00 C ATOM 3196 CG1 VAL 360 19.833 5.703 60.851 1.00 50.00 C ATOM 3197 CG2 VAL 360 18.107 3.918 61.149 1.00 50.00 C ATOM 3198 N ALA 361 19.337 7.016 57.939 1.00 50.00 N ATOM 3199 CA ALA 361 20.414 7.886 57.615 1.00 50.00 C ATOM 3200 C ALA 361 21.474 8.056 58.691 1.00 50.00 C ATOM 3201 O ALA 361 21.331 8.061 59.912 1.00 50.00 O ATOM 3202 H ALA 361 18.487 7.299 57.849 1.00 50.00 H ATOM 3203 CB ALA 361 19.891 9.270 57.264 1.00 50.00 C ATOM 3204 N TRP 362 22.713 8.219 58.257 1.00 50.00 N ATOM 3205 CA TRP 362 23.747 8.757 59.105 1.00 50.00 C ATOM 3206 C TRP 362 24.166 10.191 59.428 1.00 50.00 C ATOM 3207 O TRP 362 24.845 10.584 60.375 1.00 50.00 O ATOM 3208 H TRP 362 22.903 7.984 57.409 1.00 50.00 H ATOM 3209 CB TRP 362 25.118 8.227 58.680 1.00 50.00 C ATOM 3210 HB2 TRP 362 25.842 8.433 59.390 1.00 50.00 H ATOM 3211 HB3 TRP 362 25.283 8.187 57.695 1.00 50.00 H ATOM 3212 CG TRP 362 25.286 6.754 58.898 1.00 50.00 C ATOM 3213 CD1 TRP 362 25.277 5.778 57.945 1.00 50.00 C ATOM 3214 HE1 TRP 362 25.490 3.732 58.063 1.00 50.00 H ATOM 3215 NE1 TRP 362 25.461 4.546 58.525 1.00 50.00 N ATOM 3216 CD2 TRP 362 25.487 6.091 60.153 1.00 50.00 C ATOM 3217 CE2 TRP 362 25.593 4.714 59.882 1.00 50.00 C ATOM 3218 CH2 TRP 362 25.891 4.223 62.172 1.00 50.00 C ATOM 3219 CZ2 TRP 362 25.795 3.769 60.886 1.00 50.00 C ATOM 3220 CE3 TRP 362 25.591 6.526 61.477 1.00 50.00 C ATOM 3221 CZ3 TRP 362 25.790 5.586 62.469 1.00 50.00 C ATOM 3222 N ASN 363 23.748 11.139 58.583 1.00 50.00 N ATOM 3223 CA ASN 363 24.038 12.513 58.894 1.00 50.00 C ATOM 3224 C ASN 363 22.867 13.455 59.080 1.00 50.00 C ATOM 3225 O ASN 363 22.812 14.669 58.892 1.00 50.00 O ATOM 3226 H ASN 363 23.294 10.933 57.834 1.00 50.00 H ATOM 3227 CB ASN 363 24.937 13.128 57.819 1.00 50.00 C ATOM 3228 CG ASN 363 24.266 13.182 56.460 1.00 50.00 C ATOM 3229 OD1 ASN 363 23.331 12.428 56.187 1.00 50.00 O ATOM 3230 HD21 ASN 363 24.380 14.149 54.781 1.00 50.00 H ATOM 3231 HD22 ASN 363 25.428 14.608 55.840 1.00 50.00 H ATOM 3232 ND2 ASN 363 24.743 14.076 55.601 1.00 50.00 N ATOM 3233 N PRO 364 21.763 12.880 59.504 1.00 50.00 N ATOM 3234 CA PRO 364 20.546 13.711 59.710 1.00 50.00 C ATOM 3235 C PRO 364 21.007 14.955 60.432 1.00 50.00 C ATOM 3236 O PRO 364 20.393 16.012 60.561 1.00 50.00 O ATOM 3237 CB PRO 364 19.627 12.821 60.549 1.00 50.00 C ATOM 3238 CD PRO 364 21.530 11.465 60.028 1.00 50.00 C ATOM 3239 CG PRO 364 20.037 11.428 60.202 1.00 50.00 C ATOM 3240 N ASN 365 22.187 14.967 61.005 1.00 50.00 N ATOM 3241 CA ASN 365 23.089 15.885 61.449 1.00 50.00 C ATOM 3242 C ASN 365 23.654 17.278 61.240 1.00 50.00 C ATOM 3243 O ASN 365 24.759 17.715 61.559 1.00 50.00 O ATOM 3244 H ASN 365 22.364 14.088 61.084 1.00 50.00 H ATOM 3245 CB ASN 365 24.502 15.298 61.432 1.00 50.00 C ATOM 3246 CG ASN 365 24.697 14.215 62.474 1.00 50.00 C ATOM 3247 OD1 ASN 365 23.962 14.149 63.460 1.00 50.00 O ATOM 3248 HD21 ASN 365 25.848 12.697 62.848 1.00 50.00 H ATOM 3249 HD22 ASN 365 26.204 13.444 61.525 1.00 50.00 H ATOM 3250 ND2 ASN 365 25.690 13.360 62.259 1.00 50.00 N ATOM 3251 N LEU 366 22.835 18.124 60.629 1.00 50.00 N ATOM 3252 CA LEU 366 23.118 19.483 60.342 1.00 50.00 C ATOM 3253 C LEU 366 22.363 19.763 59.064 1.00 50.00 C ATOM 3254 O LEU 366 22.505 20.745 58.337 1.00 50.00 O ATOM 3255 H LEU 366 22.042 17.770 60.393 1.00 50.00 H ATOM 3256 CB LEU 366 24.628 19.702 60.221 1.00 50.00 C ATOM 3257 CG LEU 366 25.084 21.130 59.919 1.00 50.00 C ATOM 3258 CD1 LEU 366 24.679 22.073 61.042 1.00 50.00 C ATOM 3259 CD2 LEU 366 26.588 21.180 59.702 1.00 50.00 C ATOM 3260 N TRP 367 21.443 18.913 58.622 1.00 50.00 N ATOM 3261 CA TRP 367 20.489 19.408 57.630 1.00 50.00 C ATOM 3262 C TRP 367 19.830 20.740 57.299 1.00 50.00 C ATOM 3263 O TRP 367 19.541 21.176 56.186 1.00 50.00 O ATOM 3264 H TRP 367 21.394 18.062 58.909 1.00 50.00 H ATOM 3265 CB TRP 367 19.181 18.618 57.705 1.00 50.00 C ATOM 3266 HB2 TRP 367 19.351 17.623 57.934 1.00 50.00 H ATOM 3267 HB3 TRP 367 18.438 18.950 57.124 1.00 50.00 H ATOM 3268 CG TRP 367 18.436 18.812 58.990 1.00 50.00 C ATOM 3269 CD1 TRP 367 17.533 19.797 59.272 1.00 50.00 C ATOM 3270 HE1 TRP 367 16.429 20.211 60.962 1.00 50.00 H ATOM 3271 NE1 TRP 367 17.057 19.651 60.553 1.00 50.00 N ATOM 3272 CD2 TRP 367 18.529 18.001 60.168 1.00 50.00 C ATOM 3273 CE2 TRP 367 17.655 18.553 61.122 1.00 50.00 C ATOM 3274 CH2 TRP 367 18.229 16.893 62.699 1.00 50.00 C ATOM 3275 CZ2 TRP 367 17.497 18.005 62.395 1.00 50.00 C ATOM 3276 CE3 TRP 367 19.265 16.863 60.507 1.00 50.00 C ATOM 3277 CZ3 TRP 367 19.105 16.323 61.769 1.00 50.00 C ATOM 3278 N LYS 368 19.511 21.557 58.282 1.00 50.00 N ATOM 3279 CA LYS 368 18.236 22.374 58.132 1.00 50.00 C ATOM 3280 C LYS 368 17.362 21.535 57.202 1.00 50.00 C ATOM 3281 O LYS 368 17.422 21.447 55.977 1.00 50.00 O ATOM 3282 H LYS 368 20.016 21.644 59.022 1.00 50.00 H ATOM 3283 CB LYS 368 18.554 23.767 57.587 1.00 50.00 C ATOM 3284 CD LYS 368 16.849 25.104 58.854 1.00 50.00 C ATOM 3285 CE LYS 368 15.609 25.978 58.751 1.00 50.00 C ATOM 3286 CG LYS 368 17.345 24.683 57.480 1.00 50.00 C ATOM 3287 HZ1 LYS 368 15.151 27.754 58.024 1.00 50.00 H ATOM 3288 HZ2 LYS 368 16.194 27.111 57.245 1.00 50.00 H ATOM 3289 HZ3 LYS 368 16.514 27.717 58.526 1.00 50.00 H ATOM 3290 NZ LYS 368 15.896 27.269 58.067 1.00 50.00 N ATOM 3291 N LYS 369 16.416 20.805 57.783 1.00 50.00 N ATOM 3292 CA LYS 369 15.632 19.856 57.035 1.00 50.00 C ATOM 3293 C LYS 369 14.765 21.057 56.657 1.00 50.00 C ATOM 3294 O LYS 369 14.065 21.747 57.396 1.00 50.00 O ATOM 3295 H LYS 369 16.270 20.914 58.665 1.00 50.00 H ATOM 3296 CB LYS 369 15.120 18.742 57.950 1.00 50.00 C ATOM 3297 CD LYS 369 13.880 16.573 58.194 1.00 50.00 C ATOM 3298 CE LYS 369 15.029 15.750 58.751 1.00 50.00 C ATOM 3299 CG LYS 369 14.379 17.632 57.223 1.00 50.00 C ATOM 3300 HZ1 LYS 369 15.246 14.193 59.945 1.00 50.00 H ATOM 3301 HZ2 LYS 369 14.016 14.111 59.174 1.00 50.00 H ATOM 3302 HZ3 LYS 369 14.097 15.000 60.321 1.00 50.00 H ATOM 3303 NZ LYS 369 14.549 14.654 59.636 1.00 50.00 N ATOM 3304 N GLY 370 14.751 21.414 55.379 1.00 50.00 N ATOM 3305 CA GLY 370 13.916 22.475 54.957 1.00 50.00 C ATOM 3306 C GLY 370 12.744 22.832 55.849 1.00 50.00 C ATOM 3307 O GLY 370 11.589 22.419 55.765 1.00 50.00 O ATOM 3308 H GLY 370 15.270 20.985 54.781 1.00 50.00 H ATOM 3309 N THR 371 12.967 23.688 56.841 1.00 50.00 N ATOM 3310 CA THR 371 11.925 24.095 57.693 1.00 50.00 C ATOM 3311 C THR 371 10.712 24.794 58.285 1.00 50.00 C ATOM 3312 O THR 371 10.596 25.294 59.403 1.00 50.00 O ATOM 3313 H THR 371 13.800 24.008 56.963 1.00 50.00 H ATOM 3314 CB THR 371 12.465 24.602 59.043 1.00 50.00 C ATOM 3315 HG1 THR 371 13.035 26.280 58.418 1.00 50.00 H ATOM 3316 OG1 THR 371 13.409 25.656 58.817 1.00 50.00 O ATOM 3317 CG2 THR 371 13.161 23.477 59.795 1.00 50.00 C ATOM 3318 N ASN 372 9.642 24.878 57.503 1.00 50.00 N ATOM 3319 CA ASN 372 8.410 25.439 58.017 1.00 50.00 C ATOM 3320 C ASN 372 7.560 24.279 57.507 1.00 50.00 C ATOM 3321 O ASN 372 7.712 23.610 56.487 1.00 50.00 O ATOM 3322 H ASN 372 9.683 24.587 56.652 1.00 50.00 H ATOM 3323 CB ASN 372 8.183 26.842 57.452 1.00 50.00 C ATOM 3324 CG ASN 372 9.239 27.831 57.905 1.00 50.00 C ATOM 3325 OD1 ASN 372 9.178 28.352 59.019 1.00 50.00 O ATOM 3326 HD21 ASN 372 10.864 28.674 57.259 1.00 50.00 H ATOM 3327 HD22 ASN 372 10.219 27.691 56.235 1.00 50.00 H ATOM 3328 ND2 ASN 372 10.212 28.094 57.041 1.00 50.00 N ATOM 3329 N GLY 373 6.520 23.949 58.262 1.00 50.00 N ATOM 3330 CA GLY 373 5.776 22.775 57.716 1.00 50.00 C ATOM 3331 C GLY 373 5.980 21.675 56.702 1.00 50.00 C ATOM 3332 O GLY 373 5.207 21.346 55.804 1.00 50.00 O ATOM 3333 H GLY 373 6.242 24.344 59.021 1.00 50.00 H ATOM 3334 N TYR 374 7.101 20.968 56.752 1.00 50.00 N ATOM 3335 CA TYR 374 7.274 19.810 55.929 1.00 50.00 C ATOM 3336 C TYR 374 6.995 18.439 56.541 1.00 50.00 C ATOM 3337 O TYR 374 6.473 17.464 56.002 1.00 50.00 O ATOM 3338 H TYR 374 7.757 21.224 57.312 1.00 50.00 H ATOM 3339 CB TYR 374 8.702 19.749 55.383 1.00 50.00 C ATOM 3340 CG TYR 374 9.751 19.488 56.439 1.00 50.00 C ATOM 3341 HH TYR 374 12.947 19.475 59.612 1.00 50.00 H ATOM 3342 OH TYR 374 12.635 18.754 59.344 1.00 50.00 O ATOM 3343 CZ TYR 374 11.680 18.999 58.382 1.00 50.00 C ATOM 3344 CD1 TYR 374 10.064 18.190 56.826 1.00 50.00 C ATOM 3345 CE1 TYR 374 11.022 17.943 57.791 1.00 50.00 C ATOM 3346 CD2 TYR 374 10.425 20.539 57.046 1.00 50.00 C ATOM 3347 CE2 TYR 374 11.385 20.310 58.014 1.00 50.00 C ATOM 3348 N PRO 375 7.349 18.249 57.806 1.00 50.00 N ATOM 3349 CA PRO 375 7.464 16.906 58.330 1.00 50.00 C ATOM 3350 C PRO 375 7.757 15.582 57.619 1.00 50.00 C ATOM 3351 O PRO 375 7.411 14.453 57.963 1.00 50.00 O ATOM 3352 CB PRO 375 6.099 16.639 58.967 1.00 50.00 C ATOM 3353 CD PRO 375 6.025 18.902 58.192 1.00 50.00 C ATOM 3354 CG PRO 375 5.570 17.994 59.299 1.00 50.00 C ATOM 3355 N ILE 376 8.472 15.646 56.484 1.00 50.00 N ATOM 3356 CA ILE 376 9.411 15.437 55.440 1.00 50.00 C ATOM 3357 C ILE 376 8.481 14.282 55.751 1.00 50.00 C ATOM 3358 O ILE 376 8.782 13.183 56.216 1.00 50.00 O ATOM 3359 H ILE 376 7.850 16.292 56.407 1.00 50.00 H ATOM 3360 CB ILE 376 10.856 15.650 55.928 1.00 50.00 C ATOM 3361 CD1 ILE 376 12.662 14.634 57.413 1.00 50.00 C ATOM 3362 CG1 ILE 376 11.197 14.648 57.034 1.00 50.00 C ATOM 3363 CG2 ILE 376 11.058 17.087 56.384 1.00 50.00 C ATOM 3364 N PHE 377 7.179 14.480 55.491 1.00 50.00 N ATOM 3365 CA PHE 377 6.315 13.184 55.543 1.00 50.00 C ATOM 3366 C PHE 377 7.241 12.897 56.738 1.00 50.00 C ATOM 3367 O PHE 377 8.446 12.651 56.750 1.00 50.00 O ATOM 3368 H PHE 377 6.793 15.270 55.299 1.00 50.00 H ATOM 3369 CB PHE 377 6.397 12.431 54.213 1.00 50.00 C ATOM 3370 CG PHE 377 5.552 11.190 54.165 1.00 50.00 C ATOM 3371 CZ PHE 377 3.992 8.892 54.078 1.00 50.00 C ATOM 3372 CD1 PHE 377 4.187 11.273 53.953 1.00 50.00 C ATOM 3373 CE1 PHE 377 3.409 10.132 53.908 1.00 50.00 C ATOM 3374 CD2 PHE 377 6.121 9.941 54.332 1.00 50.00 C ATOM 3375 CE2 PHE 377 5.343 8.800 54.288 1.00 50.00 C ATOM 3376 N GLN 378 6.631 12.925 57.917 1.00 50.00 N ATOM 3377 CA GLN 378 7.361 12.906 59.198 1.00 50.00 C ATOM 3378 C GLN 378 8.246 11.734 59.478 1.00 50.00 C ATOM 3379 O GLN 378 9.368 11.779 59.979 1.00 50.00 O ATOM 3380 H GLN 378 5.733 12.956 57.912 1.00 50.00 H ATOM 3381 CB GLN 378 6.385 13.000 60.372 1.00 50.00 C ATOM 3382 CD GLN 378 7.857 14.374 61.898 1.00 50.00 C ATOM 3383 CG GLN 378 7.057 13.096 61.732 1.00 50.00 C ATOM 3384 OE1 GLN 378 7.335 15.473 61.710 1.00 50.00 O ATOM 3385 HE21 GLN 378 9.649 14.959 62.362 1.00 50.00 H ATOM 3386 HE22 GLN 378 9.472 13.411 62.377 1.00 50.00 H ATOM 3387 NE2 GLN 378 9.129 14.233 62.251 1.00 50.00 N ATOM 3388 N TRP 379 7.805 10.507 59.168 1.00 50.00 N ATOM 3389 CA TRP 379 8.801 9.436 59.279 1.00 50.00 C ATOM 3390 C TRP 379 9.539 9.359 57.954 1.00 50.00 C ATOM 3391 O TRP 379 10.165 8.406 57.494 1.00 50.00 O ATOM 3392 H TRP 379 6.965 10.315 58.906 1.00 50.00 H ATOM 3393 CB TRP 379 8.126 8.110 59.636 1.00 50.00 C ATOM 3394 HB2 TRP 379 8.818 7.396 59.921 1.00 50.00 H ATOM 3395 HB3 TRP 379 7.270 7.915 59.156 1.00 50.00 H ATOM 3396 CG TRP 379 7.512 8.099 61.003 1.00 50.00 C ATOM 3397 CD1 TRP 379 6.182 8.059 61.304 1.00 50.00 C ATOM 3398 HE1 TRP 379 5.173 8.038 63.101 1.00 50.00 H ATOM 3399 NE1 TRP 379 6.003 8.061 62.666 1.00 50.00 N ATOM 3400 CD2 TRP 379 8.207 8.128 62.256 1.00 50.00 C ATOM 3401 CE2 TRP 379 7.234 8.104 63.271 1.00 50.00 C ATOM 3402 CH2 TRP 379 8.894 8.167 64.950 1.00 50.00 C ATOM 3403 CZ2 TRP 379 7.567 8.122 64.625 1.00 50.00 C ATOM 3404 CE3 TRP 379 9.557 8.173 62.617 1.00 50.00 C ATOM 3405 CZ3 TRP 379 9.882 8.192 63.960 1.00 50.00 C ATOM 3406 N SER 380 9.516 10.442 57.187 1.00 50.00 N ATOM 3407 CA SER 380 9.863 10.768 55.789 1.00 50.00 C ATOM 3408 C SER 380 11.000 9.871 56.254 1.00 50.00 C ATOM 3409 O SER 380 11.294 8.744 55.858 1.00 50.00 O ATOM 3410 H SER 380 9.200 11.083 57.733 1.00 50.00 H ATOM 3411 CB SER 380 9.960 12.284 55.600 1.00 50.00 C ATOM 3412 HG SER 380 9.717 12.316 53.752 1.00 50.00 H ATOM 3413 OG SER 380 10.299 12.610 54.264 1.00 50.00 O ATOM 3414 N GLU 381 11.772 10.378 57.212 1.00 50.00 N ATOM 3415 CA GLU 381 12.757 9.553 57.876 1.00 50.00 C ATOM 3416 C GLU 381 13.807 9.498 58.958 1.00 50.00 C ATOM 3417 O GLU 381 14.494 9.878 59.905 1.00 50.00 O ATOM 3418 H GLU 381 11.678 11.241 57.447 1.00 50.00 H ATOM 3419 OXT GLU 381 14.713 9.036 59.650 1.00 50.00 O ATOM 3420 CB GLU 381 13.775 9.018 56.868 1.00 50.00 C ATOM 3421 CD GLU 381 14.224 6.805 57.999 1.00 50.00 C ATOM 3422 CG GLU 381 14.821 8.095 57.472 1.00 50.00 C ATOM 3423 OE1 GLU 381 13.536 6.108 57.225 1.00 50.00 O ATOM 3424 OE2 GLU 381 14.444 6.491 59.188 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.31 26.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 107.06 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 96.54 28.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 88.88 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.65 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 87.34 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 66.28 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 91.05 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 5.68 100.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.15 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 78.14 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 84.48 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 71.59 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 96.14 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 39.33 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 42.22 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 5.89 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 39.33 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.64 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 80.64 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.64 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.32 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.32 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2684 CRMSCA SECONDARY STRUCTURE . . 5.59 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.50 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.34 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.47 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.72 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.62 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.53 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.49 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.92 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.26 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.58 120 100.0 120 CRMSSC BURIED . . . . . . . . 10.45 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.07 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.56 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.26 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.46 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.537 0.747 0.779 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 44.841 0.816 0.833 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.495 0.747 0.780 26 100.0 26 ERRCA BURIED . . . . . . . . 42.755 0.748 0.776 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.402 0.743 0.776 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 44.686 0.811 0.829 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.363 0.743 0.777 129 100.0 129 ERRMC BURIED . . . . . . . . 42.619 0.744 0.774 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.817 0.674 0.726 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 39.422 0.664 0.719 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 41.662 0.722 0.761 41 100.0 41 ERRSC SURFACE . . . . . . . . 39.814 0.675 0.727 120 100.0 120 ERRSC BURIED . . . . . . . . 39.863 0.666 0.715 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.137 0.709 0.752 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 43.314 0.771 0.798 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.039 0.707 0.751 224 100.0 224 ERRALL BURIED . . . . . . . . 41.866 0.723 0.758 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 9 26 31 31 DISTCA CA (P) 0.00 0.00 6.45 29.03 83.87 31 DISTCA CA (RMS) 0.00 0.00 2.33 3.96 6.47 DISTCA ALL (N) 0 3 10 62 177 254 254 DISTALL ALL (P) 0.00 1.18 3.94 24.41 69.69 254 DISTALL ALL (RMS) 0.00 1.58 2.32 4.04 6.63 DISTALL END of the results output