####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS476_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS476_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 354 - 369 4.92 11.17 LONGEST_CONTINUOUS_SEGMENT: 16 358 - 373 4.85 11.98 LONGEST_CONTINUOUS_SEGMENT: 16 359 - 374 4.98 13.41 LCS_AVERAGE: 48.70 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 354 - 359 1.97 20.65 LCS_AVERAGE: 15.40 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 355 - 359 0.89 17.53 LCS_AVERAGE: 12.38 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 12 3 4 4 4 7 8 10 10 10 11 12 15 16 18 19 20 21 23 24 25 LCS_GDT A 352 A 352 3 4 12 3 3 3 3 4 8 10 10 10 11 12 13 16 18 19 20 21 23 24 25 LCS_GDT E 353 E 353 3 4 13 3 4 4 4 7 8 10 10 10 11 12 15 16 18 19 20 21 23 24 25 LCS_GDT E 354 E 354 3 6 16 3 4 4 4 7 7 10 10 10 11 12 15 16 18 19 20 21 23 24 25 LCS_GDT L 355 L 355 5 6 16 3 4 5 5 5 6 7 8 9 11 13 15 16 18 19 20 21 23 24 25 LCS_GDT G 356 G 356 5 6 16 3 4 5 5 5 5 7 8 9 10 12 13 14 16 17 18 20 23 24 25 LCS_GDT N 357 N 357 5 6 16 3 4 5 5 5 5 7 8 8 10 12 13 14 16 17 20 21 23 24 25 LCS_GDT I 358 I 358 5 6 16 3 4 5 5 5 5 7 8 9 11 13 15 16 18 19 20 21 23 24 25 LCS_GDT I 359 I 359 5 6 16 3 4 5 5 5 5 7 8 9 10 12 14 16 17 17 19 21 23 24 25 LCS_GDT V 360 V 360 3 4 16 3 3 3 4 4 5 7 8 9 10 12 15 16 18 19 20 21 23 24 25 LCS_GDT A 361 A 361 3 4 16 3 4 4 5 7 8 10 10 10 11 13 15 16 18 19 20 21 23 24 25 LCS_GDT W 362 W 362 3 5 16 3 4 4 5 7 8 10 10 10 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT N 363 N 363 4 5 16 4 4 5 5 7 8 10 10 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT P 364 P 364 4 5 16 4 4 5 5 5 6 9 9 11 12 13 15 16 17 17 19 20 23 24 25 LCS_GDT N 365 N 365 4 5 16 4 4 5 5 5 6 6 9 11 12 12 13 16 17 17 19 20 23 24 25 LCS_GDT L 366 L 366 4 5 16 4 4 5 5 7 8 10 10 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT W 367 W 367 3 5 16 0 3 4 4 7 8 10 10 10 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT K 368 K 368 3 5 16 3 4 4 5 7 8 10 10 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT K 369 K 369 3 3 16 1 3 3 4 4 7 9 9 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT G 370 G 370 4 5 16 3 4 4 5 5 7 9 9 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT T 371 T 371 4 5 16 3 4 4 5 5 7 9 9 11 12 13 15 16 18 19 20 21 23 24 25 LCS_GDT N 372 N 372 4 5 16 3 4 4 5 5 6 9 9 11 12 13 15 16 17 17 19 20 22 22 25 LCS_GDT G 373 G 373 4 5 16 3 4 4 5 5 6 9 9 11 12 12 13 14 16 17 17 18 19 21 23 LCS_GDT Y 374 Y 374 4 5 16 3 4 4 5 5 5 9 9 11 12 12 13 14 14 15 17 19 19 21 23 LCS_GDT P 375 P 375 4 5 15 3 4 4 5 5 6 7 8 8 10 11 12 14 14 14 15 19 19 21 21 LCS_GDT I 376 I 376 4 5 15 3 4 4 5 5 5 7 7 8 10 11 12 12 13 14 14 15 16 16 21 LCS_GDT F 377 F 377 4 4 13 3 3 4 4 5 6 7 8 8 10 11 12 12 12 13 13 14 15 18 21 LCS_GDT Q 378 Q 378 4 4 13 3 3 4 4 5 6 7 8 8 10 11 12 12 12 13 13 14 18 20 21 LCS_GDT W 379 W 379 4 4 13 3 3 4 4 4 4 7 7 8 10 11 15 16 18 19 20 21 23 24 25 LCS_GDT S 380 S 380 4 4 13 3 3 4 4 5 6 7 8 8 10 11 15 15 18 19 20 21 22 24 25 LCS_GDT E 381 E 381 4 4 13 3 4 5 5 5 7 8 8 10 11 13 15 16 18 19 20 21 23 24 25 LCS_AVERAGE LCS_A: 25.49 ( 12.38 15.40 48.70 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 5 7 8 10 10 11 12 13 15 16 18 19 20 21 23 24 25 GDT PERCENT_AT 12.90 12.90 16.13 16.13 22.58 25.81 32.26 32.26 35.48 38.71 41.94 48.39 51.61 58.06 61.29 64.52 67.74 74.19 77.42 80.65 GDT RMS_LOCAL 0.29 0.29 0.89 0.89 1.82 2.08 2.48 2.48 3.35 3.45 4.29 4.46 4.78 5.23 5.37 5.59 5.80 6.36 6.47 6.74 GDT RMS_ALL_AT 18.20 18.20 17.53 17.53 10.86 11.22 11.36 11.36 17.37 16.52 9.88 9.16 10.91 9.15 9.00 9.01 9.03 9.43 9.19 8.98 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.422 0 0.677 0.752 6.473 59.881 47.143 LGA A 352 A 352 2.957 0 0.622 0.600 5.726 63.333 54.952 LGA E 353 E 353 2.105 0 0.596 1.012 6.971 75.238 51.376 LGA E 354 E 354 3.306 0 0.617 1.429 10.724 41.190 21.852 LGA L 355 L 355 8.641 0 0.628 1.369 14.069 5.476 2.798 LGA G 356 G 356 11.254 0 0.426 0.426 11.254 0.119 0.119 LGA N 357 N 357 9.757 0 0.045 1.134 11.080 0.833 1.012 LGA I 358 I 358 8.086 0 0.570 0.619 8.748 4.286 8.988 LGA I 359 I 359 11.117 0 0.063 1.286 15.306 0.714 0.357 LGA V 360 V 360 7.921 0 0.611 1.462 10.424 11.190 6.803 LGA A 361 A 361 1.555 0 0.720 0.667 3.458 67.143 65.143 LGA W 362 W 362 1.575 0 0.533 0.770 7.845 67.619 38.878 LGA N 363 N 363 2.724 0 0.594 0.830 4.943 54.286 48.155 LGA P 364 P 364 7.607 0 0.083 0.301 9.852 10.357 7.823 LGA N 365 N 365 7.488 0 0.257 0.780 11.452 14.643 7.500 LGA L 366 L 366 2.364 0 0.072 0.162 4.015 66.310 67.798 LGA W 367 W 367 2.261 0 0.572 1.305 10.650 63.095 26.020 LGA K 368 K 368 1.681 0 0.602 0.997 10.444 50.714 32.222 LGA K 369 K 369 8.841 0 0.623 1.243 14.627 5.238 2.381 LGA G 370 G 370 11.072 0 0.631 0.631 13.596 0.000 0.000 LGA T 371 T 371 11.838 0 0.140 0.123 15.885 0.000 0.680 LGA N 372 N 372 18.206 0 0.241 1.291 21.474 0.000 0.000 LGA G 373 G 373 19.058 0 0.396 0.396 19.505 0.000 0.000 LGA Y 374 Y 374 21.187 0 0.239 0.409 26.082 0.000 0.000 LGA P 375 P 375 20.342 0 0.129 0.251 21.703 0.000 0.000 LGA I 376 I 376 21.157 0 0.257 0.407 24.301 0.000 0.000 LGA F 377 F 377 18.849 0 0.158 1.059 19.614 0.000 0.000 LGA Q 378 Q 378 14.053 0 0.649 0.953 17.900 0.000 0.000 LGA W 379 W 379 10.194 0 0.570 1.564 18.822 0.000 0.102 LGA S 380 S 380 12.746 0 0.030 0.673 15.198 0.000 0.000 LGA E 381 E 381 10.707 0 0.388 0.987 16.323 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.498 8.322 9.442 21.344 15.874 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.48 31.452 28.044 0.387 LGA_LOCAL RMSD: 2.483 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.364 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.498 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.507624 * X + -0.782127 * Y + 0.361381 * Z + -12.775168 Y_new = -0.412428 * X + -0.588847 * Y + -0.695099 * Z + -61.109600 Z_new = 0.756453 * X + 0.203805 * Y + -0.621484 * Z + 155.982956 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.682297 -0.857873 2.824710 [DEG: -39.0927 -49.1525 161.8440 ] ZXZ: 0.479439 2.241431 1.307623 [DEG: 27.4698 128.4246 74.9213 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS476_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS476_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.48 28.044 8.50 REMARK ---------------------------------------------------------- MOLECULE T0537TS476_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2dfs_A ATOM 2529 N SER 351 5.504 14.897 48.050 1.00 0.00 N ATOM 2530 CA SER 351 5.857 15.924 48.982 1.00 0.00 C ATOM 2531 CB SER 351 4.872 17.105 48.981 1.00 0.00 C ATOM 2532 OG SER 351 5.290 18.079 49.923 1.00 0.00 O ATOM 2533 C SER 351 5.899 15.375 50.365 1.00 0.00 C ATOM 2534 O SER 351 6.350 16.065 51.279 1.00 0.00 O ATOM 2535 N ALA 352 5.431 14.124 50.557 1.00 0.00 N ATOM 2536 CA ALA 352 5.398 13.553 51.871 1.00 0.00 C ATOM 2537 CB ALA 352 4.968 12.077 51.883 1.00 0.00 C ATOM 2538 C ALA 352 6.772 13.640 52.449 1.00 0.00 C ATOM 2539 O ALA 352 7.766 13.384 51.773 1.00 0.00 O ATOM 2540 N GLU 353 6.847 14.042 53.732 1.00 0.00 N ATOM 2541 CA GLU 353 8.112 14.218 54.376 1.00 0.00 C ATOM 2542 CB GLU 353 8.294 15.587 55.056 1.00 0.00 C ATOM 2543 CG GLU 353 7.331 15.823 56.221 1.00 0.00 C ATOM 2544 CD GLU 353 7.843 17.013 57.022 1.00 0.00 C ATOM 2545 OE1 GLU 353 8.891 17.588 56.626 1.00 0.00 O ATOM 2546 OE2 GLU 353 7.194 17.361 58.046 1.00 0.00 O ATOM 2547 C GLU 353 8.201 13.208 55.463 1.00 0.00 C ATOM 2548 O GLU 353 7.207 12.599 55.852 1.00 0.00 O ATOM 2549 N GLU 354 9.425 13.003 55.979 1.00 0.00 N ATOM 2550 CA GLU 354 9.610 12.037 57.015 1.00 0.00 C ATOM 2551 CB GLU 354 11.067 11.947 57.495 1.00 0.00 C ATOM 2552 CG GLU 354 11.259 11.125 58.771 1.00 0.00 C ATOM 2553 CD GLU 354 11.101 12.047 59.976 1.00 0.00 C ATOM 2554 OE1 GLU 354 11.024 13.288 59.771 1.00 0.00 O ATOM 2555 OE2 GLU 354 11.063 11.526 61.121 1.00 0.00 O ATOM 2556 C GLU 354 8.769 12.419 58.185 1.00 0.00 C ATOM 2557 O GLU 354 8.774 13.566 58.632 1.00 0.00 O ATOM 2558 N LEU 355 7.985 11.448 58.680 1.00 0.00 N ATOM 2559 CA LEU 355 7.181 11.651 59.845 1.00 0.00 C ATOM 2560 CB LEU 355 5.952 12.553 59.624 1.00 0.00 C ATOM 2561 CG LEU 355 5.108 12.747 60.903 1.00 0.00 C ATOM 2562 CD1 LEU 355 5.910 13.434 62.019 1.00 0.00 C ATOM 2563 CD2 LEU 355 3.781 13.460 60.600 1.00 0.00 C ATOM 2564 C LEU 355 6.692 10.306 60.259 1.00 0.00 C ATOM 2565 O LEU 355 6.780 9.340 59.503 1.00 0.00 O ATOM 2566 N GLY 356 6.188 10.203 61.502 1.00 0.00 N ATOM 2567 CA GLY 356 5.615 8.970 61.943 1.00 0.00 C ATOM 2568 C GLY 356 6.678 7.942 62.157 1.00 0.00 C ATOM 2569 O GLY 356 7.719 8.200 62.757 1.00 0.00 O ATOM 2570 N ASN 357 6.406 6.729 61.642 1.00 0.00 N ATOM 2571 CA ASN 357 7.212 5.561 61.839 1.00 0.00 C ATOM 2572 CB ASN 357 6.595 4.308 61.194 1.00 0.00 C ATOM 2573 CG ASN 357 5.304 4.000 61.941 1.00 0.00 C ATOM 2574 OD1 ASN 357 4.404 3.344 61.420 1.00 0.00 O ATOM 2575 ND2 ASN 357 5.204 4.499 63.203 1.00 0.00 N ATOM 2576 C ASN 357 8.585 5.733 61.274 1.00 0.00 C ATOM 2577 O ASN 357 9.556 5.286 61.880 1.00 0.00 O ATOM 2578 N ILE 358 8.740 6.400 60.116 1.00 0.00 N ATOM 2579 CA ILE 358 10.069 6.398 59.576 1.00 0.00 C ATOM 2580 CB ILE 358 10.112 6.651 58.099 1.00 0.00 C ATOM 2581 CG2 ILE 358 11.584 6.823 57.687 1.00 0.00 C ATOM 2582 CG1 ILE 358 9.385 5.526 57.344 1.00 0.00 C ATOM 2583 CD1 ILE 358 9.139 5.837 55.869 1.00 0.00 C ATOM 2584 C ILE 358 10.870 7.476 60.228 1.00 0.00 C ATOM 2585 O ILE 358 10.848 8.628 59.810 1.00 0.00 O ATOM 2586 N ILE 359 11.590 7.101 61.303 1.00 0.00 N ATOM 2587 CA ILE 359 12.466 7.977 62.025 1.00 0.00 C ATOM 2588 CB ILE 359 12.949 7.382 63.319 1.00 0.00 C ATOM 2589 CG2 ILE 359 13.773 6.125 62.996 1.00 0.00 C ATOM 2590 CG1 ILE 359 13.707 8.432 64.146 1.00 0.00 C ATOM 2591 CD1 ILE 359 12.814 9.564 64.649 1.00 0.00 C ATOM 2592 C ILE 359 13.665 8.288 61.187 1.00 0.00 C ATOM 2593 O ILE 359 14.157 9.415 61.175 1.00 0.00 O ATOM 2594 N VAL 360 14.153 7.273 60.448 1.00 0.00 N ATOM 2595 CA VAL 360 15.380 7.359 59.712 1.00 0.00 C ATOM 2596 CB VAL 360 15.607 6.184 58.807 1.00 0.00 C ATOM 2597 CG1 VAL 360 15.736 4.917 59.670 1.00 0.00 C ATOM 2598 CG2 VAL 360 14.458 6.126 57.786 1.00 0.00 C ATOM 2599 C VAL 360 15.403 8.588 58.867 1.00 0.00 C ATOM 2600 O VAL 360 14.394 9.006 58.301 1.00 0.00 O ATOM 2601 N ALA 361 16.602 9.206 58.808 1.00 0.00 N ATOM 2602 CA ALA 361 16.880 10.377 58.030 1.00 0.00 C ATOM 2603 CB ALA 361 16.904 11.678 58.850 1.00 0.00 C ATOM 2604 C ALA 361 18.257 10.168 57.482 1.00 0.00 C ATOM 2605 O ALA 361 18.970 9.270 57.926 1.00 0.00 O ATOM 2606 N TRP 362 18.666 10.975 56.480 1.00 0.00 N ATOM 2607 CA TRP 362 19.969 10.761 55.922 1.00 0.00 C ATOM 2608 CB TRP 362 19.966 10.137 54.520 1.00 0.00 C ATOM 2609 CG TRP 362 19.414 8.736 54.492 1.00 0.00 C ATOM 2610 CD2 TRP 362 18.081 8.418 54.076 1.00 0.00 C ATOM 2611 CD1 TRP 362 20.019 7.554 54.795 1.00 0.00 C ATOM 2612 NE1 TRP 362 19.148 6.513 54.587 1.00 0.00 N ATOM 2613 CE2 TRP 362 17.950 7.031 54.145 1.00 0.00 C ATOM 2614 CE3 TRP 362 17.055 9.216 53.663 1.00 0.00 C ATOM 2615 CZ2 TRP 362 16.780 6.416 53.798 1.00 0.00 C ATOM 2616 CZ3 TRP 362 15.877 8.594 53.321 1.00 0.00 C ATOM 2617 CH2 TRP 362 15.743 7.222 53.386 1.00 0.00 C ATOM 2618 C TRP 362 20.691 12.064 55.816 1.00 0.00 C ATOM 2619 O TRP 362 20.417 13.019 56.542 1.00 0.00 O ATOM 2620 N ASN 363 21.668 12.101 54.891 1.00 0.00 N ATOM 2621 CA ASN 363 22.522 13.233 54.683 1.00 0.00 C ATOM 2622 CB ASN 363 23.608 12.985 53.620 1.00 0.00 C ATOM 2623 CG ASN 363 24.681 12.128 54.279 1.00 0.00 C ATOM 2624 OD1 ASN 363 24.872 12.191 55.491 1.00 0.00 O ATOM 2625 ND2 ASN 363 25.404 11.309 53.472 1.00 0.00 N ATOM 2626 C ASN 363 21.769 14.479 54.320 1.00 0.00 C ATOM 2627 O ASN 363 22.168 15.531 54.811 1.00 0.00 O ATOM 2628 N PRO 364 20.743 14.519 53.510 1.00 0.00 N ATOM 2629 CA PRO 364 20.073 15.760 53.247 1.00 0.00 C ATOM 2630 CD PRO 364 20.131 13.389 52.827 1.00 0.00 C ATOM 2631 CB PRO 364 18.974 15.430 52.236 1.00 0.00 C ATOM 2632 CG PRO 364 18.754 13.913 52.392 1.00 0.00 C ATOM 2633 C PRO 364 19.548 16.289 54.540 1.00 0.00 C ATOM 2634 O PRO 364 19.326 17.495 54.656 1.00 0.00 O ATOM 2635 N ASN 365 19.330 15.409 55.534 1.00 0.00 N ATOM 2636 CA ASN 365 18.822 15.919 56.767 1.00 0.00 C ATOM 2637 CB ASN 365 18.000 14.872 57.540 1.00 0.00 C ATOM 2638 CG ASN 365 16.996 15.610 58.413 1.00 0.00 C ATOM 2639 OD1 ASN 365 17.080 16.826 58.569 1.00 0.00 O ATOM 2640 ND2 ASN 365 16.007 14.862 58.973 1.00 0.00 N ATOM 2641 C ASN 365 20.022 16.295 57.579 1.00 0.00 C ATOM 2642 O ASN 365 20.025 16.228 58.807 1.00 0.00 O ATOM 2643 N LEU 366 21.086 16.710 56.869 1.00 0.00 N ATOM 2644 CA LEU 366 22.304 17.183 57.444 1.00 0.00 C ATOM 2645 CB LEU 366 23.385 17.442 56.383 1.00 0.00 C ATOM 2646 CG LEU 366 24.711 17.959 56.964 1.00 0.00 C ATOM 2647 CD1 LEU 366 25.359 16.908 57.882 1.00 0.00 C ATOM 2648 CD2 LEU 366 25.649 18.449 55.850 1.00 0.00 C ATOM 2649 C LEU 366 21.971 18.493 58.069 1.00 0.00 C ATOM 2650 O LEU 366 22.468 18.844 59.139 1.00 0.00 O ATOM 2651 N TRP 367 21.073 19.234 57.397 1.00 0.00 N ATOM 2652 CA TRP 367 20.700 20.554 57.807 1.00 0.00 C ATOM 2653 CB TRP 367 19.607 21.162 56.906 1.00 0.00 C ATOM 2654 CG TRP 367 19.242 22.593 57.227 1.00 0.00 C ATOM 2655 CD2 TRP 367 17.998 23.208 56.854 1.00 0.00 C ATOM 2656 CD1 TRP 367 19.958 23.548 57.890 1.00 0.00 C ATOM 2657 NE1 TRP 367 19.244 24.722 57.937 1.00 0.00 N ATOM 2658 CE2 TRP 367 18.033 24.525 57.307 1.00 0.00 C ATOM 2659 CE3 TRP 367 16.915 22.712 56.185 1.00 0.00 C ATOM 2660 CZ2 TRP 367 16.982 25.373 57.098 1.00 0.00 C ATOM 2661 CZ3 TRP 367 15.857 23.568 55.980 1.00 0.00 C ATOM 2662 CH2 TRP 367 15.889 24.873 56.426 1.00 0.00 C ATOM 2663 C TRP 367 20.137 20.474 59.188 1.00 0.00 C ATOM 2664 O TRP 367 20.494 21.274 60.051 1.00 0.00 O ATOM 2665 N LYS 368 19.254 19.490 59.441 1.00 0.00 N ATOM 2666 CA LYS 368 18.642 19.388 60.738 1.00 0.00 C ATOM 2667 CB LYS 368 17.630 18.231 60.864 1.00 0.00 C ATOM 2668 CG LYS 368 18.282 16.858 61.034 1.00 0.00 C ATOM 2669 CD LYS 368 17.294 15.737 61.377 1.00 0.00 C ATOM 2670 CE LYS 368 16.401 16.017 62.587 1.00 0.00 C ATOM 2671 NZ LYS 368 17.117 15.690 63.840 1.00 0.00 N ATOM 2672 C LYS 368 19.720 19.125 61.735 1.00 0.00 C ATOM 2673 O LYS 368 19.703 19.648 62.847 1.00 0.00 O ATOM 2674 N LYS 369 20.704 18.306 61.337 1.00 0.00 N ATOM 2675 CA LYS 369 21.773 17.948 62.217 1.00 0.00 C ATOM 2676 CB LYS 369 22.797 17.022 61.542 1.00 0.00 C ATOM 2677 CG LYS 369 22.211 15.666 61.144 1.00 0.00 C ATOM 2678 CD LYS 369 23.100 14.873 60.186 1.00 0.00 C ATOM 2679 CE LYS 369 24.388 14.355 60.828 1.00 0.00 C ATOM 2680 NZ LYS 369 25.278 15.489 61.166 1.00 0.00 N ATOM 2681 C LYS 369 22.467 19.214 62.591 1.00 0.00 C ATOM 2682 O LYS 369 22.952 19.359 63.711 1.00 0.00 O ATOM 2683 N GLY 370 22.511 20.171 61.647 1.00 0.00 N ATOM 2684 CA GLY 370 23.183 21.421 61.842 1.00 0.00 C ATOM 2685 C GLY 370 22.561 22.161 62.985 1.00 0.00 C ATOM 2686 O GLY 370 23.266 22.841 63.730 1.00 0.00 O ATOM 2687 N THR 371 21.226 22.073 63.154 1.00 0.00 N ATOM 2688 CA THR 371 20.607 22.835 64.203 1.00 0.00 C ATOM 2689 CB THR 371 19.123 22.614 64.317 1.00 0.00 C ATOM 2690 OG1 THR 371 18.851 21.266 64.668 1.00 0.00 O ATOM 2691 CG2 THR 371 18.461 22.955 62.970 1.00 0.00 C ATOM 2692 C THR 371 21.222 22.433 65.504 1.00 0.00 C ATOM 2693 O THR 371 21.703 23.280 66.254 1.00 0.00 O ATOM 2694 N ASN 372 21.264 21.119 65.788 1.00 0.00 N ATOM 2695 CA ASN 372 21.905 20.681 66.989 1.00 0.00 C ATOM 2696 CB ASN 372 21.712 19.189 67.298 1.00 0.00 C ATOM 2697 CG ASN 372 20.380 19.059 68.033 1.00 0.00 C ATOM 2698 OD1 ASN 372 20.295 19.387 69.215 1.00 0.00 O ATOM 2699 ND2 ASN 372 19.316 18.593 67.329 1.00 0.00 N ATOM 2700 C ASN 372 23.345 21.011 66.815 1.00 0.00 C ATOM 2701 O ASN 372 24.066 21.257 67.780 1.00 0.00 O ATOM 2702 N GLY 373 23.791 21.032 65.547 1.00 0.00 N ATOM 2703 CA GLY 373 25.127 21.432 65.251 1.00 0.00 C ATOM 2704 C GLY 373 26.068 20.320 65.545 1.00 0.00 C ATOM 2705 O GLY 373 26.265 19.416 64.735 1.00 0.00 O ATOM 2706 N TYR 374 26.697 20.357 66.724 1.00 0.00 N ATOM 2707 CA TYR 374 27.720 19.392 66.955 1.00 0.00 C ATOM 2708 CB TYR 374 29.105 20.053 67.083 1.00 0.00 C ATOM 2709 CG TYR 374 29.404 20.593 65.728 1.00 0.00 C ATOM 2710 CD1 TYR 374 28.890 21.804 65.327 1.00 0.00 C ATOM 2711 CD2 TYR 374 30.193 19.879 64.857 1.00 0.00 C ATOM 2712 CE1 TYR 374 29.162 22.298 64.073 1.00 0.00 C ATOM 2713 CE2 TYR 374 30.467 20.367 63.601 1.00 0.00 C ATOM 2714 CZ TYR 374 29.950 21.580 63.208 1.00 0.00 C ATOM 2715 OH TYR 374 30.228 22.087 61.921 1.00 0.00 O ATOM 2716 C TYR 374 27.413 18.656 68.209 1.00 0.00 C ATOM 2717 O TYR 374 26.381 18.856 68.847 1.00 0.00 O ATOM 2718 N PRO 375 28.318 17.782 68.554 1.00 0.00 N ATOM 2719 CA PRO 375 28.179 17.005 69.747 1.00 0.00 C ATOM 2720 CD PRO 375 29.102 17.070 67.559 1.00 0.00 C ATOM 2721 CB PRO 375 29.347 16.005 69.720 1.00 0.00 C ATOM 2722 CG PRO 375 30.117 16.301 68.415 1.00 0.00 C ATOM 2723 C PRO 375 28.168 17.947 70.901 1.00 0.00 C ATOM 2724 O PRO 375 28.445 19.127 70.696 1.00 0.00 O ATOM 2725 N ILE 376 27.805 17.474 72.108 1.00 0.00 N ATOM 2726 CA ILE 376 27.725 18.424 73.172 1.00 0.00 C ATOM 2727 CB ILE 376 27.287 17.841 74.483 1.00 0.00 C ATOM 2728 CG2 ILE 376 25.847 17.334 74.311 1.00 0.00 C ATOM 2729 CG1 ILE 376 28.274 16.775 74.980 1.00 0.00 C ATOM 2730 CD1 ILE 376 28.002 16.340 76.416 1.00 0.00 C ATOM 2731 C ILE 376 29.068 19.044 73.349 1.00 0.00 C ATOM 2732 O ILE 376 30.058 18.392 73.668 1.00 0.00 O ATOM 2733 N PHE 377 29.094 20.357 73.069 1.00 0.00 N ATOM 2734 CA PHE 377 30.218 21.233 73.193 1.00 0.00 C ATOM 2735 CB PHE 377 31.593 20.669 72.742 1.00 0.00 C ATOM 2736 CG PHE 377 31.625 20.398 71.279 1.00 0.00 C ATOM 2737 CD1 PHE 377 31.177 19.200 70.777 1.00 0.00 C ATOM 2738 CD2 PHE 377 32.125 21.335 70.406 1.00 0.00 C ATOM 2739 CE1 PHE 377 31.201 18.943 69.427 1.00 0.00 C ATOM 2740 CE2 PHE 377 32.150 21.086 69.052 1.00 0.00 C ATOM 2741 CZ PHE 377 31.684 19.890 68.557 1.00 0.00 C ATOM 2742 C PHE 377 29.832 22.439 72.400 1.00 0.00 C ATOM 2743 O PHE 377 28.672 22.578 72.013 1.00 0.00 O ATOM 2744 N GLN 378 30.772 23.364 72.143 1.00 0.00 N ATOM 2745 CA GLN 378 30.371 24.541 71.433 1.00 0.00 C ATOM 2746 CB GLN 378 31.487 25.591 71.280 1.00 0.00 C ATOM 2747 CG GLN 378 31.922 26.240 72.597 1.00 0.00 C ATOM 2748 CD GLN 378 32.701 25.212 73.403 1.00 0.00 C ATOM 2749 OE1 GLN 378 33.416 24.376 72.853 1.00 0.00 O ATOM 2750 NE2 GLN 378 32.562 25.276 74.754 1.00 0.00 N ATOM 2751 C GLN 378 29.937 24.151 70.060 1.00 0.00 C ATOM 2752 O GLN 378 30.584 23.352 69.388 1.00 0.00 O ATOM 2753 N TRP 379 28.798 24.711 69.606 1.00 0.00 N ATOM 2754 CA TRP 379 28.335 24.436 68.280 1.00 0.00 C ATOM 2755 CB TRP 379 26.797 24.445 68.167 1.00 0.00 C ATOM 2756 CG TRP 379 26.161 25.745 68.602 1.00 0.00 C ATOM 2757 CD2 TRP 379 25.997 26.137 69.973 1.00 0.00 C ATOM 2758 CD1 TRP 379 25.686 26.777 67.846 1.00 0.00 C ATOM 2759 NE1 TRP 379 25.238 27.791 68.660 1.00 0.00 N ATOM 2760 CE2 TRP 379 25.424 27.409 69.973 1.00 0.00 C ATOM 2761 CE3 TRP 379 26.306 25.492 71.136 1.00 0.00 C ATOM 2762 CZ2 TRP 379 25.151 28.058 71.143 1.00 0.00 C ATOM 2763 CZ3 TRP 379 26.021 26.145 72.314 1.00 0.00 C ATOM 2764 CH2 TRP 379 25.456 27.404 72.317 1.00 0.00 C ATOM 2765 C TRP 379 28.888 25.542 67.449 1.00 0.00 C ATOM 2766 O TRP 379 28.511 26.703 67.595 1.00 0.00 O ATOM 2767 N SER 380 29.818 25.210 66.540 1.00 0.00 N ATOM 2768 CA SER 380 30.436 26.269 65.809 1.00 0.00 C ATOM 2769 CB SER 380 31.971 26.210 65.835 1.00 0.00 C ATOM 2770 OG SER 380 32.516 27.289 65.090 1.00 0.00 O ATOM 2771 C SER 380 30.011 26.182 64.389 1.00 0.00 C ATOM 2772 O SER 380 29.863 25.089 63.844 1.00 0.00 O ATOM 2773 N GLU 381 29.815 27.371 63.782 1.00 0.00 N ATOM 2774 CA GLU 381 29.425 27.578 62.416 1.00 0.00 C ATOM 2775 CB GLU 381 30.635 27.723 61.476 1.00 0.00 C ATOM 2776 CG GLU 381 31.545 26.492 61.450 1.00 0.00 C ATOM 2777 CD GLU 381 32.723 26.798 60.535 1.00 0.00 C ATOM 2778 OE1 GLU 381 32.821 27.965 60.070 1.00 0.00 O ATOM 2779 OE2 GLU 381 33.543 25.872 60.291 1.00 0.00 O ATOM 2780 C GLU 381 28.528 26.458 61.904 1.00 0.00 C ATOM 2781 O GLU 381 28.904 25.814 60.889 1.00 0.00 O ATOM 2782 OXT GLU 381 27.454 26.232 62.523 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.04 38.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 108.46 36.4 22 100.0 22 ARMSMC SURFACE . . . . . . . . 94.33 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.62 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.46 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 81.28 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 90.56 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 81.78 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 95.42 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.46 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 71.16 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 100.27 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.30 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 79.03 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.67 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 85.08 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 8.83 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 77.67 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 103.66 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 103.66 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 103.66 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.50 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.50 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2741 CRMSCA SECONDARY STRUCTURE . . 7.51 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.27 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.61 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.51 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.48 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.27 129 100.0 129 CRMSMC BURIED . . . . . . . . 9.73 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.46 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.47 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.30 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.31 120 100.0 120 CRMSSC BURIED . . . . . . . . 12.11 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.48 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.84 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.35 224 100.0 224 CRMSALL BURIED . . . . . . . . 10.41 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.862 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.845 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.587 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 9.292 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.888 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.902 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.624 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 9.364 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.773 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.813 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 7.906 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.600 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 11.844 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.775 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 7.348 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.609 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 10.012 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 7 22 31 31 DISTCA CA (P) 0.00 3.23 9.68 22.58 70.97 31 DISTCA CA (RMS) 0.00 1.75 2.27 3.64 6.66 DISTCA ALL (N) 0 2 14 42 170 254 254 DISTALL ALL (P) 0.00 0.79 5.51 16.54 66.93 254 DISTALL ALL (RMS) 0.00 1.82 2.53 3.72 7.08 DISTALL END of the results output