####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS458_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS458_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.84 16.71 LONGEST_CONTINUOUS_SEGMENT: 17 358 - 374 4.96 15.13 LCS_AVERAGE: 50.88 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 367 - 373 1.98 16.85 LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.84 15.45 LONGEST_CONTINUOUS_SEGMENT: 7 374 - 380 1.74 18.76 LCS_AVERAGE: 20.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 374 - 378 0.98 15.40 LONGEST_CONTINUOUS_SEGMENT: 5 375 - 379 0.96 17.31 LCS_AVERAGE: 13.11 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 4 6 17 3 4 5 5 7 7 10 11 12 14 14 15 15 15 16 17 18 18 20 22 LCS_GDT A 352 A 352 4 6 17 3 4 4 5 6 6 9 11 12 14 14 15 15 16 16 17 18 18 19 21 LCS_GDT E 353 E 353 4 6 17 3 4 4 5 7 7 9 11 12 14 14 15 15 16 16 17 18 18 19 22 LCS_GDT E 354 E 354 4 6 17 3 4 4 5 6 7 10 11 12 14 14 15 15 16 16 17 18 18 20 22 LCS_GDT L 355 L 355 4 6 17 3 4 4 5 6 6 8 10 12 14 14 15 15 16 16 17 18 18 19 22 LCS_GDT G 356 G 356 4 6 17 3 4 4 5 7 7 10 10 12 14 14 15 15 16 16 17 18 18 20 22 LCS_GDT N 357 N 357 3 6 17 3 4 5 5 6 7 10 11 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT I 358 I 358 3 5 17 3 4 5 5 7 7 10 11 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT I 359 I 359 4 5 17 4 4 5 5 6 7 10 11 12 12 14 15 15 16 17 18 19 19 20 22 LCS_GDT V 360 V 360 4 5 17 4 4 4 4 5 6 9 11 12 12 13 13 15 16 16 18 19 19 20 22 LCS_GDT A 361 A 361 4 6 17 4 4 4 5 7 8 9 11 12 14 14 15 15 16 17 18 19 19 19 21 LCS_GDT W 362 W 362 4 6 17 4 4 5 5 7 8 10 11 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT N 363 N 363 4 6 17 3 4 4 5 7 8 10 10 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT P 364 P 364 4 6 17 3 4 4 5 7 8 10 10 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT N 365 N 365 4 6 17 3 4 4 5 7 8 10 10 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT L 366 L 366 3 6 17 3 3 3 3 7 8 8 10 12 14 14 15 15 16 17 18 19 19 20 22 LCS_GDT W 367 W 367 4 7 17 3 4 5 6 6 6 7 8 8 10 11 13 14 15 17 18 19 19 20 22 LCS_GDT K 368 K 368 4 7 17 3 4 5 6 6 7 8 9 9 10 11 13 14 16 17 18 19 19 20 22 LCS_GDT K 369 K 369 4 7 17 3 4 5 6 6 8 8 9 9 10 12 13 14 16 17 18 19 19 20 22 LCS_GDT G 370 G 370 4 7 17 3 4 5 6 7 8 8 9 9 11 12 13 14 16 17 18 19 19 20 22 LCS_GDT T 371 T 371 4 7 17 3 4 5 6 6 6 8 8 9 11 12 13 14 16 17 18 19 19 20 22 LCS_GDT N 372 N 372 4 7 17 3 4 5 6 6 6 7 8 9 11 12 13 14 16 17 18 19 19 20 22 LCS_GDT G 373 G 373 4 7 17 3 4 5 6 6 7 8 9 9 11 12 13 14 16 17 18 19 19 20 22 LCS_GDT Y 374 Y 374 5 7 17 3 4 5 6 6 7 8 9 9 10 12 13 14 16 17 18 19 19 20 22 LCS_GDT P 375 P 375 5 7 15 4 4 5 6 6 7 8 9 9 10 11 12 14 15 16 18 19 19 20 22 LCS_GDT I 376 I 376 5 7 11 4 4 5 6 6 7 8 11 12 12 12 13 15 15 16 17 18 18 19 19 LCS_GDT F 377 F 377 5 7 11 4 4 5 6 6 7 9 10 12 12 13 13 15 16 16 17 18 18 18 19 LCS_GDT Q 378 Q 378 5 7 11 4 4 5 6 6 7 8 9 9 10 13 13 14 16 16 16 17 18 18 19 LCS_GDT W 379 W 379 5 7 11 3 4 5 5 6 7 8 9 9 9 11 11 14 16 16 16 17 18 18 19 LCS_GDT S 380 S 380 4 7 11 3 3 4 4 5 7 8 9 9 9 11 11 13 16 16 16 17 18 18 19 LCS_GDT E 381 E 381 3 6 11 3 3 3 4 5 7 8 9 9 9 10 10 10 10 10 12 14 14 14 15 LCS_AVERAGE LCS_A: 28.17 ( 13.11 20.50 50.88 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 7 8 10 11 12 14 14 15 15 16 17 18 19 19 20 22 GDT PERCENT_AT 12.90 12.90 16.13 19.35 22.58 25.81 32.26 35.48 38.71 45.16 45.16 48.39 48.39 51.61 54.84 58.06 61.29 61.29 64.52 70.97 GDT RMS_LOCAL 0.23 0.23 0.79 1.13 1.69 2.12 2.75 3.05 3.20 3.69 3.69 3.91 3.91 4.67 5.06 5.24 5.50 5.50 6.96 7.39 GDT RMS_ALL_AT 14.95 14.95 17.41 17.36 16.58 17.76 15.87 13.93 14.13 17.25 17.25 17.09 17.09 14.98 14.90 14.86 14.59 14.59 13.41 13.18 # Checking swapping # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.666 0 0.667 0.901 6.437 46.429 40.000 LGA A 352 A 352 3.620 0 0.058 0.084 5.925 48.095 43.714 LGA E 353 E 353 3.819 0 0.069 1.220 9.793 46.905 28.836 LGA E 354 E 354 3.418 0 0.599 1.253 5.871 42.619 39.841 LGA L 355 L 355 8.802 0 0.340 1.377 14.855 5.595 2.798 LGA G 356 G 356 7.305 0 0.606 0.606 7.305 18.095 18.095 LGA N 357 N 357 2.138 0 0.566 0.559 4.655 62.024 53.750 LGA I 358 I 358 1.856 0 0.038 1.099 5.846 77.619 54.345 LGA I 359 I 359 2.686 0 0.550 0.548 8.698 77.738 48.095 LGA V 360 V 360 3.098 0 0.049 1.222 6.196 55.714 44.082 LGA A 361 A 361 3.447 0 0.139 0.134 4.695 59.405 53.810 LGA W 362 W 362 2.144 0 0.616 1.171 9.051 52.381 34.218 LGA N 363 N 363 7.727 0 0.065 0.789 13.678 7.857 3.929 LGA P 364 P 364 9.679 0 0.606 0.519 13.410 1.905 8.299 LGA N 365 N 365 16.078 0 0.491 0.942 19.452 0.000 0.000 LGA L 366 L 366 17.880 0 0.587 1.418 20.379 0.000 0.000 LGA W 367 W 367 21.200 0 0.552 1.301 27.247 0.000 0.000 LGA K 368 K 368 22.532 0 0.038 1.287 30.788 0.000 0.000 LGA K 369 K 369 22.397 0 0.073 1.160 25.248 0.000 0.000 LGA G 370 G 370 26.144 0 0.136 0.136 26.277 0.000 0.000 LGA T 371 T 371 27.914 0 0.646 0.612 30.118 0.000 0.000 LGA N 372 N 372 25.685 0 0.720 1.324 26.370 0.000 0.000 LGA G 373 G 373 20.702 0 0.697 0.697 21.936 0.000 0.000 LGA Y 374 Y 374 14.845 0 0.046 1.081 24.680 0.000 0.000 LGA P 375 P 375 8.090 0 0.116 0.170 10.579 7.976 6.871 LGA I 376 I 376 2.920 0 0.116 0.304 6.520 59.048 45.179 LGA F 377 F 377 4.935 0 0.048 1.251 11.544 35.357 14.935 LGA Q 378 Q 378 9.744 0 0.101 0.615 18.169 1.310 0.582 LGA W 379 W 379 12.841 0 0.716 1.338 19.126 0.000 0.000 LGA S 380 S 380 12.643 0 0.112 0.146 14.180 0.000 0.000 LGA E 381 E 381 17.514 0 0.355 1.137 21.173 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 11.395 11.356 12.959 22.776 17.464 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 3.05 31.452 29.502 0.349 LGA_LOCAL RMSD: 3.055 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.925 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.395 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.787646 * X + 0.609660 * Y + -0.089041 * Z + 16.132095 Y_new = -0.613727 * X + -0.763592 * Y + 0.200668 * Z + -24.363800 Z_new = 0.054348 * X + 0.212702 * Y + 0.975605 * Z + -8.460328 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.479670 -0.054375 0.214661 [DEG: -142.0746 -3.1155 12.2992 ] ZXZ: -2.723972 0.221338 0.250162 [DEG: -156.0721 12.6817 14.3332 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS458_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS458_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 3.05 29.502 11.39 REMARK ---------------------------------------------------------- MOLECULE T0537TS458_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2vji_A ATOM 2529 N SER 351 5.550 17.062 51.894 1.00 67.54 N ATOM 2530 CA SER 351 4.256 16.496 52.166 1.00 67.54 C ATOM 2531 CB SER 351 3.110 17.314 51.548 1.00 67.54 C ATOM 2532 OG SER 351 3.132 18.641 52.052 1.00 67.54 O ATOM 2533 C SER 351 4.178 15.101 51.610 1.00 67.54 C ATOM 2534 O SER 351 3.311 14.322 52.002 1.00 67.54 O ATOM 2535 N ALA 352 5.086 14.742 50.688 1.00 62.62 N ATOM 2536 CA ALA 352 5.167 13.414 50.136 1.00 62.62 C ATOM 2537 CB ALA 352 6.053 13.318 48.882 1.00 62.62 C ATOM 2538 C ALA 352 5.734 12.456 51.142 1.00 62.62 C ATOM 2539 O ALA 352 5.409 11.270 51.148 1.00 62.62 O ATOM 2540 N GLU 353 6.619 12.975 52.013 1.00110.98 N ATOM 2541 CA GLU 353 7.484 12.228 52.883 1.00110.98 C ATOM 2542 CB GLU 353 8.414 13.130 53.711 1.00110.98 C ATOM 2543 CG GLU 353 9.417 13.916 52.865 1.00110.98 C ATOM 2544 CD GLU 353 8.723 15.169 52.360 1.00110.98 C ATOM 2545 OE1 GLU 353 7.614 15.481 52.871 1.00110.98 O ATOM 2546 OE2 GLU 353 9.296 15.840 51.458 1.00110.98 O ATOM 2547 C GLU 353 6.790 11.338 53.855 1.00110.98 C ATOM 2548 O GLU 353 7.315 10.255 54.111 1.00110.98 O ATOM 2549 N GLU 354 5.615 11.767 54.375 1.00141.73 N ATOM 2550 CA GLU 354 4.841 11.178 55.446 1.00141.73 C ATOM 2551 CB GLU 354 3.329 11.233 55.183 1.00141.73 C ATOM 2552 CG GLU 354 2.917 10.450 53.935 1.00141.73 C ATOM 2553 CD GLU 354 1.419 10.627 53.733 1.00141.73 C ATOM 2554 OE1 GLU 354 0.968 11.801 53.674 1.00141.73 O ATOM 2555 OE2 GLU 354 0.705 9.592 53.636 1.00141.73 O ATOM 2556 C GLU 354 5.204 9.748 55.695 1.00141.73 C ATOM 2557 O GLU 354 5.193 8.914 54.791 1.00141.73 O ATOM 2558 N LEU 355 5.546 9.451 56.965 1.00293.77 N ATOM 2559 CA LEU 355 5.996 8.153 57.372 1.00293.77 C ATOM 2560 CB LEU 355 4.995 7.035 57.020 1.00293.77 C ATOM 2561 CG LEU 355 5.385 5.644 57.561 1.00293.77 C ATOM 2562 CD1 LEU 355 5.296 5.591 59.096 1.00293.77 C ATOM 2563 CD2 LEU 355 4.579 4.531 56.874 1.00293.77 C ATOM 2564 C LEU 355 7.304 7.870 56.691 1.00293.77 C ATOM 2565 O LEU 355 7.643 6.717 56.428 1.00293.77 O ATOM 2566 N GLY 356 8.091 8.927 56.395 1.00 54.48 N ATOM 2567 CA GLY 356 9.365 8.708 55.767 1.00 54.48 C ATOM 2568 C GLY 356 10.334 9.723 56.291 1.00 54.48 C ATOM 2569 O GLY 356 9.945 10.787 56.766 1.00 54.48 O ATOM 2570 N ASN 357 11.645 9.405 56.220 1.00 55.30 N ATOM 2571 CA ASN 357 12.636 10.331 56.686 1.00 55.30 C ATOM 2572 CB ASN 357 13.664 9.683 57.623 1.00 55.30 C ATOM 2573 CG ASN 357 12.929 9.277 58.890 1.00 55.30 C ATOM 2574 OD1 ASN 357 12.402 10.126 59.605 1.00 55.30 O ATOM 2575 ND2 ASN 357 12.881 7.946 59.170 1.00 55.30 N ATOM 2576 C ASN 357 13.377 10.826 55.486 1.00 55.30 C ATOM 2577 O ASN 357 14.355 10.224 55.045 1.00 55.30 O ATOM 2578 N ILE 358 12.894 11.944 54.918 1.00136.86 N ATOM 2579 CA ILE 358 13.476 12.555 53.760 1.00136.86 C ATOM 2580 CB ILE 358 12.597 13.624 53.166 1.00136.86 C ATOM 2581 CG2 ILE 358 12.326 14.702 54.231 1.00136.86 C ATOM 2582 CG1 ILE 358 13.207 14.157 51.860 1.00136.86 C ATOM 2583 CD1 ILE 358 12.256 15.054 51.071 1.00136.86 C ATOM 2584 C ILE 358 14.787 13.181 54.097 1.00136.86 C ATOM 2585 O ILE 358 15.740 13.045 53.328 1.00136.86 O ATOM 2586 N ILE 359 14.800 13.848 55.273 1.00101.24 N ATOM 2587 CA ILE 359 15.775 14.686 55.931 1.00101.24 C ATOM 2588 CB ILE 359 15.786 14.487 57.428 1.00101.24 C ATOM 2589 CG2 ILE 359 16.939 15.290 58.055 1.00101.24 C ATOM 2590 CG1 ILE 359 14.410 14.877 57.999 1.00101.24 C ATOM 2591 CD1 ILE 359 14.218 14.489 59.465 1.00101.24 C ATOM 2592 C ILE 359 17.162 14.587 55.374 1.00101.24 C ATOM 2593 O ILE 359 17.618 13.551 54.901 1.00101.24 O ATOM 2594 N VAL 360 17.886 15.723 55.436 1.00123.13 N ATOM 2595 CA VAL 360 19.224 15.848 54.945 1.00123.13 C ATOM 2596 CB VAL 360 19.823 17.180 55.283 1.00123.13 C ATOM 2597 CG1 VAL 360 19.026 18.276 54.552 1.00123.13 C ATOM 2598 CG2 VAL 360 19.837 17.335 56.813 1.00123.13 C ATOM 2599 C VAL 360 20.040 14.803 55.628 1.00123.13 C ATOM 2600 O VAL 360 20.966 14.244 55.040 1.00123.13 O ATOM 2601 N ALA 361 19.698 14.499 56.892 1.00 38.12 N ATOM 2602 CA ALA 361 20.430 13.514 57.629 1.00 38.12 C ATOM 2603 CB ALA 361 19.818 13.223 59.009 1.00 38.12 C ATOM 2604 C ALA 361 20.362 12.251 56.838 1.00 38.12 C ATOM 2605 O ALA 361 21.346 11.520 56.784 1.00 38.12 O ATOM 2606 N TRP 362 19.178 11.974 56.247 1.00198.51 N ATOM 2607 CA TRP 362 18.850 10.886 55.368 1.00198.51 C ATOM 2608 CB TRP 362 19.884 10.538 54.269 1.00198.51 C ATOM 2609 CG TRP 362 21.185 9.868 54.641 1.00198.51 C ATOM 2610 CD2 TRP 362 22.474 10.413 54.316 1.00198.51 C ATOM 2611 CD1 TRP 362 21.413 8.668 55.244 1.00198.51 C ATOM 2612 NE1 TRP 362 22.767 8.437 55.332 1.00198.51 N ATOM 2613 CE2 TRP 362 23.430 9.501 54.757 1.00198.51 C ATOM 2614 CE3 TRP 362 22.831 11.574 53.691 1.00198.51 C ATOM 2615 CZ2 TRP 362 24.763 9.737 54.582 1.00198.51 C ATOM 2616 CZ3 TRP 362 24.176 11.815 53.521 1.00198.51 C ATOM 2617 CH2 TRP 362 25.124 10.913 53.959 1.00198.51 C ATOM 2618 C TRP 362 18.513 9.686 56.188 1.00198.51 C ATOM 2619 O TRP 362 18.660 9.703 57.408 1.00198.51 O ATOM 2620 N ASN 363 17.988 8.625 55.544 1.00 65.04 N ATOM 2621 CA ASN 363 17.674 7.439 56.288 1.00 65.04 C ATOM 2622 CB ASN 363 16.314 6.831 55.908 1.00 65.04 C ATOM 2623 CG ASN 363 15.969 5.760 56.930 1.00 65.04 C ATOM 2624 OD1 ASN 363 16.075 4.566 56.658 1.00 65.04 O ATOM 2625 ND2 ASN 363 15.555 6.202 58.149 1.00 65.04 N ATOM 2626 C ASN 363 18.732 6.435 55.962 1.00 65.04 C ATOM 2627 O ASN 363 18.728 5.837 54.887 1.00 65.04 O ATOM 2628 N PRO 364 19.666 6.246 56.852 1.00158.48 N ATOM 2629 CA PRO 364 20.702 5.314 56.535 1.00158.48 C ATOM 2630 CD PRO 364 20.151 7.329 57.693 1.00158.48 C ATOM 2631 CB PRO 364 21.860 5.620 57.484 1.00158.48 C ATOM 2632 CG PRO 364 21.667 7.106 57.826 1.00158.48 C ATOM 2633 C PRO 364 20.244 3.900 56.620 1.00158.48 C ATOM 2634 O PRO 364 20.000 3.430 57.729 1.00158.48 O ATOM 2635 N ASN 365 20.157 3.183 55.489 1.00118.33 N ATOM 2636 CA ASN 365 19.901 1.783 55.608 1.00118.33 C ATOM 2637 CB ASN 365 18.629 1.281 54.914 1.00118.33 C ATOM 2638 CG ASN 365 18.489 -0.172 55.345 1.00118.33 C ATOM 2639 OD1 ASN 365 18.907 -0.539 56.442 1.00118.33 O ATOM 2640 ND2 ASN 365 17.911 -1.027 54.462 1.00118.33 N ATOM 2641 C ASN 365 21.041 1.171 54.890 1.00118.33 C ATOM 2642 O ASN 365 20.909 0.724 53.751 1.00118.33 O ATOM 2643 N LEU 366 22.209 1.147 55.551 1.00 62.95 N ATOM 2644 CA LEU 366 23.372 0.642 54.895 1.00 62.95 C ATOM 2645 CB LEU 366 24.434 1.721 54.616 1.00 62.95 C ATOM 2646 CG LEU 366 23.956 2.868 53.706 1.00 62.95 C ATOM 2647 CD1 LEU 366 25.080 3.889 53.472 1.00 62.95 C ATOM 2648 CD2 LEU 366 23.345 2.341 52.398 1.00 62.95 C ATOM 2649 C LEU 366 24.008 -0.354 55.795 1.00 62.95 C ATOM 2650 O LEU 366 23.814 -0.330 57.010 1.00 62.95 O ATOM 2651 N TRP 367 24.762 -1.289 55.194 1.00138.33 N ATOM 2652 CA TRP 367 25.470 -2.252 55.974 1.00138.33 C ATOM 2653 CB TRP 367 26.205 -3.293 55.115 1.00138.33 C ATOM 2654 CG TRP 367 27.038 -4.242 55.934 1.00138.33 C ATOM 2655 CD2 TRP 367 26.495 -5.311 56.721 1.00138.33 C ATOM 2656 CD1 TRP 367 28.388 -4.259 56.130 1.00138.33 C ATOM 2657 NE1 TRP 367 28.723 -5.282 56.985 1.00138.33 N ATOM 2658 CE2 TRP 367 27.566 -5.935 57.360 1.00138.33 C ATOM 2659 CE3 TRP 367 25.209 -5.734 56.902 1.00138.33 C ATOM 2660 CZ2 TRP 367 27.366 -6.999 58.192 1.00138.33 C ATOM 2661 CZ3 TRP 367 25.012 -6.809 57.740 1.00138.33 C ATOM 2662 CH2 TRP 367 26.070 -7.429 58.373 1.00138.33 C ATOM 2663 C TRP 367 26.492 -1.522 56.782 1.00138.33 C ATOM 2664 O TRP 367 26.570 -1.695 57.997 1.00138.33 O ATOM 2665 N LYS 368 27.296 -0.663 56.126 1.00157.20 N ATOM 2666 CA LYS 368 28.306 0.051 56.854 1.00157.20 C ATOM 2667 CB LYS 368 29.710 -0.578 56.747 1.00157.20 C ATOM 2668 CG LYS 368 30.775 0.118 57.602 1.00157.20 C ATOM 2669 CD LYS 368 30.585 -0.078 59.109 1.00157.20 C ATOM 2670 CE LYS 368 31.170 -1.389 59.641 1.00157.20 C ATOM 2671 NZ LYS 368 30.441 -2.540 59.065 1.00157.20 N ATOM 2672 C LYS 368 28.394 1.425 56.280 1.00157.20 C ATOM 2673 O LYS 368 28.100 1.642 55.105 1.00157.20 O ATOM 2674 N LYS 369 28.801 2.399 57.116 1.00107.56 N ATOM 2675 CA LYS 369 28.913 3.747 56.650 1.00107.56 C ATOM 2676 CB LYS 369 28.000 4.739 57.393 1.00107.56 C ATOM 2677 CG LYS 369 28.422 4.988 58.842 1.00107.56 C ATOM 2678 CD LYS 369 27.728 6.190 59.486 1.00107.56 C ATOM 2679 CE LYS 369 28.275 6.537 60.871 1.00107.56 C ATOM 2680 NZ LYS 369 28.003 5.433 61.818 1.00107.56 N ATOM 2681 C LYS 369 30.319 4.191 56.878 1.00107.56 C ATOM 2682 O LYS 369 31.047 3.622 57.692 1.00107.56 O ATOM 2683 N GLY 370 30.732 5.229 56.131 0.50 59.39 N ATOM 2684 CA GLY 370 32.046 5.788 56.240 0.50 59.39 C ATOM 2685 C GLY 370 31.832 7.257 56.380 0.50 59.39 C ATOM 2686 O GLY 370 30.698 7.692 56.562 0.50 59.39 O ATOM 2687 N THR 371 32.910 8.061 56.276 1.00239.71 N ATOM 2688 CA THR 371 32.782 9.479 56.463 1.00239.71 C ATOM 2689 CB THR 371 34.043 10.249 56.188 1.00239.71 C ATOM 2690 OG1 THR 371 34.430 10.091 54.830 1.00239.71 O ATOM 2691 CG2 THR 371 35.156 9.748 57.123 1.00239.71 C ATOM 2692 C THR 371 31.741 10.000 55.529 1.00239.71 C ATOM 2693 O THR 371 31.794 9.775 54.321 1.00239.71 O ATOM 2694 N ASN 372 30.750 10.714 56.098 1.00 91.68 N ATOM 2695 CA ASN 372 29.677 11.275 55.335 1.00 91.68 C ATOM 2696 CB ASN 372 28.343 10.536 55.537 1.00 91.68 C ATOM 2697 CG ASN 372 28.509 9.131 54.979 1.00 91.68 C ATOM 2698 OD1 ASN 372 28.999 8.944 53.866 1.00 91.68 O ATOM 2699 ND2 ASN 372 28.100 8.110 55.779 1.00 91.68 N ATOM 2700 C ASN 372 29.493 12.681 55.820 1.00 91.68 C ATOM 2701 O ASN 372 30.191 13.121 56.732 1.00 91.68 O ATOM 2702 N GLY 373 28.557 13.437 55.202 1.00133.30 N ATOM 2703 CA GLY 373 28.333 14.802 55.598 1.00133.30 C ATOM 2704 C GLY 373 26.865 14.986 55.842 1.00133.30 C ATOM 2705 O GLY 373 26.050 14.154 55.446 1.00133.30 O ATOM 2706 N TYR 374 26.491 16.100 56.508 1.00212.50 N ATOM 2707 CA TYR 374 25.106 16.331 56.814 1.00212.50 C ATOM 2708 CB TYR 374 24.828 16.373 58.325 1.00212.50 C ATOM 2709 CG TYR 374 25.012 14.978 58.815 1.00212.50 C ATOM 2710 CD1 TYR 374 26.270 14.433 58.922 1.00212.50 C ATOM 2711 CD2 TYR 374 23.921 14.220 59.174 1.00212.50 C ATOM 2712 CE1 TYR 374 26.437 13.145 59.371 1.00212.50 C ATOM 2713 CE2 TYR 374 24.082 12.931 59.625 1.00212.50 C ATOM 2714 CZ TYR 374 25.342 12.393 59.722 1.00212.50 C ATOM 2715 OH TYR 374 25.513 11.071 60.182 1.00212.50 O ATOM 2716 C TYR 374 24.660 17.628 56.209 1.00212.50 C ATOM 2717 O TYR 374 25.299 18.671 56.331 1.00212.50 O ATOM 2718 N PRO 375 23.557 17.520 55.520 1.00139.90 N ATOM 2719 CA PRO 375 22.966 18.662 54.863 1.00139.90 C ATOM 2720 CD PRO 375 23.393 16.312 54.724 1.00139.90 C ATOM 2721 CB PRO 375 22.198 18.120 53.660 1.00139.90 C ATOM 2722 CG PRO 375 22.872 16.776 53.357 1.00139.90 C ATOM 2723 C PRO 375 22.080 19.491 55.742 1.00139.90 C ATOM 2724 O PRO 375 21.890 19.153 56.910 1.00139.90 O ATOM 2725 N ILE 376 21.541 20.593 55.172 1.00 95.16 N ATOM 2726 CA ILE 376 20.624 21.484 55.827 1.00 95.16 C ATOM 2727 CB ILE 376 21.137 22.886 55.954 1.00 95.16 C ATOM 2728 CG2 ILE 376 22.397 22.859 56.835 1.00 95.16 C ATOM 2729 CG1 ILE 376 21.359 23.495 54.559 1.00 95.16 C ATOM 2730 CD1 ILE 376 21.596 25.004 54.581 1.00 95.16 C ATOM 2731 C ILE 376 19.405 21.565 54.957 1.00 95.16 C ATOM 2732 O ILE 376 19.479 21.358 53.748 1.00 95.16 O ATOM 2733 N PHE 377 18.231 21.846 55.559 1.00 97.63 N ATOM 2734 CA PHE 377 17.026 21.917 54.780 1.00 97.63 C ATOM 2735 CB PHE 377 15.786 21.390 55.522 1.00 97.63 C ATOM 2736 CG PHE 377 15.549 22.271 56.702 1.00 97.63 C ATOM 2737 CD1 PHE 377 14.754 23.389 56.593 1.00 97.63 C ATOM 2738 CD2 PHE 377 16.124 21.979 57.919 1.00 97.63 C ATOM 2739 CE1 PHE 377 14.535 24.201 57.681 1.00 97.63 C ATOM 2740 CE2 PHE 377 15.910 22.788 59.010 1.00 97.63 C ATOM 2741 CZ PHE 377 15.114 23.901 58.891 1.00 97.63 C ATOM 2742 C PHE 377 16.757 23.343 54.424 1.00 97.63 C ATOM 2743 O PHE 377 16.971 24.248 55.229 1.00 97.63 O ATOM 2744 N GLN 378 16.326 23.583 53.168 1.00 88.07 N ATOM 2745 CA GLN 378 15.965 24.913 52.775 1.00 88.07 C ATOM 2746 CB GLN 378 15.726 25.065 51.258 1.00 88.07 C ATOM 2747 CG GLN 378 15.341 26.486 50.823 1.00 88.07 C ATOM 2748 CD GLN 378 15.213 26.516 49.302 1.00 88.07 C ATOM 2749 OE1 GLN 378 14.153 26.821 48.757 1.00 88.07 O ATOM 2750 NE2 GLN 378 16.332 26.201 48.596 1.00 88.07 N ATOM 2751 C GLN 378 14.706 25.254 53.503 1.00 88.07 C ATOM 2752 O GLN 378 14.573 26.349 54.046 1.00 88.07 O ATOM 2753 N TRP 379 13.743 24.309 53.549 1.00105.94 N ATOM 2754 CA TRP 379 12.534 24.588 54.268 1.00105.94 C ATOM 2755 CB TRP 379 11.379 25.118 53.406 1.00105.94 C ATOM 2756 CG TRP 379 10.205 25.586 54.236 1.00105.94 C ATOM 2757 CD2 TRP 379 10.207 26.829 54.951 1.00105.94 C ATOM 2758 CD1 TRP 379 9.014 24.982 54.510 1.00105.94 C ATOM 2759 NE1 TRP 379 8.268 25.778 55.351 1.00105.94 N ATOM 2760 CE2 TRP 379 8.995 26.918 55.631 1.00105.94 C ATOM 2761 CE3 TRP 379 11.148 27.815 55.040 1.00105.94 C ATOM 2762 CZ2 TRP 379 8.702 27.999 56.416 1.00105.94 C ATOM 2763 CZ3 TRP 379 10.849 28.906 55.824 1.00105.94 C ATOM 2764 CH2 TRP 379 9.649 28.997 56.499 1.00105.94 C ATOM 2765 C TRP 379 12.086 23.320 54.918 1.00105.94 C ATOM 2766 O TRP 379 12.601 22.243 54.624 1.00105.94 O ATOM 2767 N SER 380 11.117 23.425 55.848 1.00 31.82 N ATOM 2768 CA SER 380 10.655 22.272 56.565 1.00 31.82 C ATOM 2769 CB SER 380 10.078 22.604 57.952 1.00 31.82 C ATOM 2770 OG SER 380 11.101 23.116 58.794 1.00 31.82 O ATOM 2771 C SER 380 9.595 21.582 55.774 1.00 31.82 C ATOM 2772 O SER 380 9.116 22.085 54.757 1.00 31.82 O ATOM 2773 N GLU 381 9.220 20.369 56.222 1.00 81.78 N ATOM 2774 CA GLU 381 8.196 19.634 55.550 1.00 81.78 C ATOM 2775 CB GLU 381 8.171 18.145 55.929 1.00 81.78 C ATOM 2776 CG GLU 381 9.482 17.438 55.594 1.00 81.78 C ATOM 2777 CD GLU 381 9.891 17.873 54.195 1.00 81.78 C ATOM 2778 OE1 GLU 381 9.054 17.740 53.262 1.00 81.78 O ATOM 2779 OE2 GLU 381 11.043 18.359 54.043 1.00 81.78 O ATOM 2780 C GLU 381 6.887 20.244 56.022 1.00 81.78 C ATOM 2781 O GLU 381 6.074 19.503 56.637 1.00 81.78 O ATOM 2782 OXT GLU 381 6.691 21.466 55.786 1.00 81.78 O TER 2783 GLU 381 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.05 46.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 90.26 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 85.81 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 81.13 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.96 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 96.72 36.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 102.14 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 100.83 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 72.27 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.69 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 70.22 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 69.18 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 79.35 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 6.84 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.06 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 57.65 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 45.02 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 63.06 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 113.68 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 113.68 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 113.68 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.39 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.39 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3676 CRMSCA SECONDARY STRUCTURE . . 7.49 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.77 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.18 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.47 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.61 54 100.0 54 CRMSMC SURFACE . . . . . . . . 11.90 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.74 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 14.51 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 14.74 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.64 41 100.0 41 CRMSSC SURFACE . . . . . . . . 14.93 120 100.0 120 CRMSSC BURIED . . . . . . . . 7.85 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.07 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.55 85 100.0 85 CRMSALL SURFACE . . . . . . . . 13.56 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.58 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 104.704 0.795 0.818 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 112.633 0.848 0.864 11 100.0 11 ERRCA SURFACE . . . . . . . . 108.045 0.791 0.814 26 100.0 26 ERRCA BURIED . . . . . . . . 87.330 0.817 0.838 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 105.289 0.795 0.817 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 113.759 0.849 0.864 54 100.0 54 ERRMC SURFACE . . . . . . . . 107.825 0.789 0.811 129 100.0 129 ERRMC BURIED . . . . . . . . 91.064 0.832 0.849 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 115.014 0.785 0.810 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 117.032 0.785 0.811 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 138.891 0.867 0.878 41 100.0 41 ERRSC SURFACE . . . . . . . . 115.292 0.777 0.804 120 100.0 120 ERRSC BURIED . . . . . . . . 111.686 0.878 0.885 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 110.009 0.791 0.814 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 125.358 0.859 0.872 85 100.0 85 ERRALL SURFACE . . . . . . . . 111.935 0.784 0.808 224 100.0 224 ERRALL BURIED . . . . . . . . 95.632 0.842 0.857 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 16 31 31 DISTCA CA (P) 0.00 0.00 0.00 6.45 51.61 31 DISTCA CA (RMS) 0.00 0.00 0.00 3.72 6.91 DISTCA ALL (N) 0 0 2 16 109 254 254 DISTALL ALL (P) 0.00 0.00 0.79 6.30 42.91 254 DISTALL ALL (RMS) 0.00 0.00 2.51 3.87 7.21 DISTALL END of the results output