####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS457_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS457_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 357 - 375 4.94 9.46 LCS_AVERAGE: 57.23 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.50 12.16 LCS_AVERAGE: 17.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 354 - 358 0.55 12.43 LCS_AVERAGE: 12.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 18 3 3 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT A 352 A 352 3 4 18 3 3 4 4 7 9 10 16 17 18 19 20 20 21 22 23 24 25 26 26 LCS_GDT E 353 E 353 3 4 18 3 3 4 4 4 7 8 10 11 18 19 20 20 21 21 23 24 25 26 26 LCS_GDT E 354 E 354 5 5 18 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT L 355 L 355 5 5 18 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT G 356 G 356 5 5 18 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT N 357 N 357 5 5 19 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT I 358 I 358 5 5 19 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT I 359 I 359 3 4 19 3 3 4 6 7 9 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT V 360 V 360 3 4 19 3 3 4 4 5 9 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT A 361 A 361 4 5 19 3 4 4 7 10 10 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT W 362 W 362 4 5 19 3 4 4 6 7 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT N 363 N 363 4 5 19 3 4 4 5 9 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT P 364 P 364 4 5 19 3 4 4 5 7 8 11 15 17 18 18 20 21 22 22 23 24 25 26 26 LCS_GDT N 365 N 365 4 5 19 3 4 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT L 366 L 366 3 5 19 3 3 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT W 367 W 367 3 5 19 1 3 3 4 5 6 7 8 9 12 15 19 21 22 22 23 24 25 26 26 LCS_GDT K 368 K 368 4 5 19 3 3 4 4 5 6 7 8 9 12 14 17 18 22 22 23 23 24 26 26 LCS_GDT K 369 K 369 4 5 19 3 3 4 4 5 6 7 8 9 11 14 15 17 17 19 23 23 24 25 26 LCS_GDT G 370 G 370 4 5 19 3 3 4 4 5 6 7 8 9 12 14 16 17 19 22 23 23 24 25 26 LCS_GDT T 371 T 371 4 4 19 1 3 4 4 4 6 8 10 12 14 17 19 21 22 22 23 23 25 26 26 LCS_GDT N 372 N 372 4 8 19 3 5 6 7 8 8 8 10 12 16 17 19 21 22 22 23 24 25 26 26 LCS_GDT G 373 G 373 4 8 19 3 5 6 7 8 8 8 10 12 16 18 19 21 22 22 23 24 25 26 26 LCS_GDT Y 374 Y 374 4 8 19 3 4 5 7 8 8 8 11 13 17 18 19 21 22 22 23 24 25 26 26 LCS_GDT P 375 P 375 4 8 19 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT I 376 I 376 4 8 17 4 4 6 7 8 9 13 16 17 18 19 20 21 22 22 23 24 25 26 26 LCS_GDT F 377 F 377 4 8 16 4 5 6 7 8 8 8 9 9 12 19 20 20 21 22 23 24 25 26 26 LCS_GDT Q 378 Q 378 4 8 12 4 4 6 6 8 8 8 9 14 16 19 20 20 21 22 23 24 25 26 26 LCS_GDT W 379 W 379 4 8 12 4 5 6 7 8 8 8 9 9 9 10 13 15 16 19 21 22 22 23 23 LCS_GDT S 380 S 380 4 4 12 4 4 5 5 5 7 8 8 9 9 11 13 17 18 19 21 22 22 23 23 LCS_GDT E 381 E 381 4 4 12 4 4 5 5 5 5 5 6 8 9 10 10 10 10 11 14 16 17 23 23 LCS_AVERAGE LCS_A: 29.24 ( 12.70 17.79 57.23 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 8 10 11 13 16 17 18 19 20 21 22 22 23 24 25 26 26 GDT PERCENT_AT 12.90 16.13 19.35 25.81 32.26 35.48 41.94 51.61 54.84 58.06 61.29 64.52 67.74 70.97 70.97 74.19 77.42 80.65 83.87 83.87 GDT RMS_LOCAL 0.25 0.55 0.73 1.35 1.64 2.13 2.51 3.00 3.12 3.38 3.84 3.90 4.47 4.70 4.70 4.91 5.10 5.38 5.60 5.60 GDT RMS_ALL_AT 13.27 12.43 12.25 9.51 9.55 9.23 9.10 9.16 9.12 9.21 9.12 9.12 8.53 8.64 8.64 8.32 8.37 8.31 8.37 8.37 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.205 0 0.638 0.749 2.743 71.071 71.746 LGA A 352 A 352 4.480 0 0.557 0.524 5.450 40.714 37.810 LGA E 353 E 353 6.858 0 0.476 1.043 12.413 26.190 11.799 LGA E 354 E 354 1.118 0 0.337 0.488 8.607 67.262 41.429 LGA L 355 L 355 2.722 0 0.194 1.341 7.742 61.429 45.714 LGA G 356 G 356 3.047 0 0.165 0.165 3.569 51.905 51.905 LGA N 357 N 357 2.455 0 0.284 0.356 3.294 62.857 59.107 LGA I 358 I 358 3.499 0 0.585 0.573 8.154 57.500 39.583 LGA I 359 I 359 3.305 0 0.580 0.594 7.013 57.500 38.214 LGA V 360 V 360 3.679 0 0.551 0.554 6.165 43.452 35.510 LGA A 361 A 361 4.276 0 0.131 0.135 6.344 46.905 40.952 LGA W 362 W 362 2.682 0 0.080 1.566 13.759 56.071 20.374 LGA N 363 N 363 2.186 0 0.292 0.310 7.056 59.405 42.798 LGA P 364 P 364 4.963 0 0.218 0.223 6.955 37.976 31.701 LGA N 365 N 365 1.958 0 0.537 0.754 5.640 63.214 51.667 LGA L 366 L 366 2.712 0 0.493 1.551 6.902 49.048 33.810 LGA W 367 W 367 8.295 0 0.387 1.240 13.692 5.595 1.633 LGA K 368 K 368 11.302 0 0.523 0.846 14.304 0.119 0.053 LGA K 369 K 369 15.055 0 0.099 0.840 22.035 0.000 0.000 LGA G 370 G 370 15.204 0 0.422 0.422 16.733 0.000 0.000 LGA T 371 T 371 13.078 0 0.536 1.262 14.378 0.000 0.000 LGA N 372 N 372 12.025 0 0.613 1.457 12.861 0.000 0.000 LGA G 373 G 373 10.110 0 0.161 0.161 10.284 1.071 1.071 LGA Y 374 Y 374 8.649 0 0.082 0.196 20.108 11.905 3.968 LGA P 375 P 375 2.795 0 0.653 0.586 6.474 46.310 38.163 LGA I 376 I 376 3.552 0 0.136 1.364 7.788 50.833 33.750 LGA F 377 F 377 7.618 0 0.135 1.152 14.691 8.571 3.117 LGA Q 378 Q 378 8.034 0 0.523 1.272 11.942 2.976 24.444 LGA W 379 W 379 15.299 0 0.194 1.325 22.465 0.000 0.000 LGA S 380 S 380 17.464 0 0.295 0.832 19.448 0.000 0.000 LGA E 381 E 381 24.012 0 0.058 1.122 31.723 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.045 7.970 9.708 31.609 24.526 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 16 3.00 41.935 37.159 0.516 LGA_LOCAL RMSD: 3.001 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.160 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.045 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.214728 * X + -0.631759 * Y + 0.744830 * Z + 13.778377 Y_new = 0.025216 * X + -0.765951 * Y + -0.642404 * Z + 19.627659 Z_new = 0.976348 * X + -0.119160 * Y + 0.180401 * Z + -9.896564 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.024694 -1.352872 -0.583740 [DEG: 173.3022 -77.5139 -33.4459 ] ZXZ: 0.859099 1.389402 1.692242 [DEG: 49.2228 79.6069 96.9584 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS457_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS457_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 16 3.00 37.159 8.05 REMARK ---------------------------------------------------------- MOLECULE T0537TS457_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2vji_A ATOM 4971 N SER 351 4.303 14.235 51.328 1.00 0.50 N ATOM 4972 CA SER 351 4.791 12.948 51.812 1.00 0.50 C ATOM 4973 C SER 351 6.184 12.649 51.274 1.00 0.50 C ATOM 4974 O SER 351 6.992 12.006 51.944 1.00 0.50 O ATOM 4975 CB SER 351 3.828 11.828 51.410 1.00 0.50 C ATOM 4976 OG SER 351 4.266 10.585 51.934 1.00 0.50 O ATOM 4982 N ALA 352 6.457 13.117 50.062 1.00 0.50 N ATOM 4983 CA ALA 352 7.755 12.900 49.432 1.00 0.50 C ATOM 4984 C ALA 352 8.761 12.332 50.424 1.00 0.50 C ATOM 4985 O ALA 352 9.504 13.075 51.064 1.00 0.50 O ATOM 4986 CB ALA 352 8.281 14.207 48.845 1.00 0.50 C ATOM 4992 N GLU 353 8.779 11.009 50.549 1.00 0.50 N ATOM 4993 CA GLU 353 9.694 10.338 51.464 1.00 0.50 C ATOM 4994 C GLU 353 9.879 11.141 52.745 1.00 0.50 C ATOM 4995 O GLU 353 11.002 11.479 53.119 1.00 0.50 O ATOM 4996 CB GLU 353 11.052 10.111 50.791 1.00 0.50 C ATOM 4997 CG GLU 353 11.022 9.064 49.686 1.00 0.50 C ATOM 4998 CD GLU 353 10.645 7.680 50.181 1.00 0.50 C ATOM 4999 OE1 GLU 353 11.272 7.182 51.142 1.00 0.50 O ATOM 5000 OE2 GLU 353 9.715 7.078 49.592 1.00 0.50 O ATOM 5007 N GLU 354 8.771 11.445 53.412 1.00 0.50 N ATOM 5008 CA GLU 354 8.810 12.209 54.653 1.00 0.50 C ATOM 5009 C GLU 354 9.053 13.688 54.382 1.00 0.50 C ATOM 5010 O GLU 354 9.567 14.410 55.237 1.00 0.50 O ATOM 5011 CB GLU 354 9.900 11.665 55.582 1.00 0.50 C ATOM 5012 CG GLU 354 9.696 10.209 55.980 1.00 0.50 C ATOM 5013 CD GLU 354 10.744 9.701 56.954 1.00 0.50 C ATOM 5014 OE1 GLU 354 11.637 10.480 57.354 1.00 0.50 O ATOM 5015 OE2 GLU 354 10.677 8.501 57.315 1.00 0.50 O ATOM 5022 N LEU 355 8.683 14.134 53.186 1.00 0.50 N ATOM 5023 CA LEU 355 8.860 15.528 52.800 1.00 0.50 C ATOM 5024 C LEU 355 9.542 16.324 53.905 1.00 0.50 C ATOM 5025 O LEU 355 10.738 16.607 53.833 1.00 0.50 O ATOM 5026 CB LEU 355 7.506 16.163 52.466 1.00 0.50 C ATOM 5027 CG LEU 355 7.536 17.628 52.023 1.00 0.50 C ATOM 5028 CD1 LEU 355 8.315 17.768 50.722 1.00 0.50 C ATOM 5029 CD2 LEU 355 6.116 18.153 51.853 1.00 0.50 C ATOM 5041 N GLY 356 8.774 16.684 54.928 1.00 0.50 N ATOM 5042 CA GLY 356 9.303 17.449 56.051 1.00 0.50 C ATOM 5043 C GLY 356 10.552 16.793 56.624 1.00 0.50 C ATOM 5044 O GLY 356 11.271 17.395 57.422 1.00 0.50 O ATOM 5048 N ASN 357 10.803 15.554 56.217 1.00 0.50 N ATOM 5049 CA ASN 357 11.967 14.813 56.690 1.00 0.50 C ATOM 5050 C ASN 357 12.717 14.167 55.532 1.00 0.50 C ATOM 5051 O ASN 357 13.610 13.346 55.739 1.00 0.50 O ATOM 5052 CB ASN 357 11.545 13.748 57.708 1.00 0.50 C ATOM 5053 CG ASN 357 10.727 14.325 58.848 1.00 0.50 C ATOM 5054 OD1 ASN 357 11.193 15.202 59.580 1.00 0.50 O ATOM 5055 ND2 ASN 357 9.502 13.840 59.009 1.00 0.50 N ATOM 5062 N ILE 358 12.348 14.542 54.312 1.00 0.50 N ATOM 5063 CA ILE 358 12.986 14.001 53.117 1.00 0.50 C ATOM 5064 C ILE 358 14.030 12.952 53.479 1.00 0.50 C ATOM 5065 O ILE 358 14.710 13.064 54.498 1.00 0.50 O ATOM 5066 CB ILE 358 13.649 15.121 52.283 1.00 0.50 C ATOM 5067 CG1 ILE 358 12.580 16.045 51.686 1.00 0.50 C ATOM 5068 CG2 ILE 358 14.527 14.526 51.180 1.00 0.50 C ATOM 5069 CD1 ILE 358 13.150 17.244 50.945 1.00 0.50 C ATOM 5081 N ILE 359 14.150 11.930 52.637 1.00 0.50 N ATOM 5082 CA ILE 359 15.111 10.858 52.866 1.00 0.50 C ATOM 5083 C ILE 359 16.239 11.316 53.782 1.00 0.50 C ATOM 5084 O ILE 359 17.014 12.205 53.430 1.00 0.50 O ATOM 5085 CB ILE 359 15.706 10.348 51.532 1.00 0.50 C ATOM 5086 CG1 ILE 359 14.609 9.717 50.667 1.00 0.50 C ATOM 5087 CG2 ILE 359 16.834 9.346 51.792 1.00 0.50 C ATOM 5088 CD1 ILE 359 15.055 9.403 49.247 1.00 0.50 C ATOM 5100 N VAL 360 16.325 10.704 54.958 1.00 0.50 N ATOM 5101 CA VAL 360 17.360 11.049 55.927 1.00 0.50 C ATOM 5102 C VAL 360 18.748 10.940 55.312 1.00 0.50 C ATOM 5103 O VAL 360 19.404 9.903 55.412 1.00 0.50 O ATOM 5104 CB VAL 360 17.281 10.145 57.177 1.00 0.50 C ATOM 5105 CG1 VAL 360 18.388 10.492 58.165 1.00 0.50 C ATOM 5106 CG2 VAL 360 15.917 10.279 57.846 1.00 0.50 C ATOM 5116 N ALA 361 19.192 12.017 54.672 1.00 0.50 N ATOM 5117 CA ALA 361 20.505 12.046 54.038 1.00 0.50 C ATOM 5118 C ALA 361 21.474 11.099 54.737 1.00 0.50 C ATOM 5119 O ALA 361 22.659 11.053 54.405 1.00 0.50 O ATOM 5120 CB ALA 361 21.065 13.466 54.048 1.00 0.50 C ATOM 5126 N TRP 362 20.964 10.346 55.705 1.00 0.50 N ATOM 5127 CA TRP 362 21.783 9.399 56.451 1.00 0.50 C ATOM 5128 C TRP 362 22.090 9.920 57.849 1.00 0.50 C ATOM 5129 O TRP 362 21.841 9.239 58.845 1.00 0.50 O ATOM 5130 CB TRP 362 23.090 9.115 55.701 1.00 0.50 C ATOM 5131 CG TRP 362 23.987 8.129 56.392 1.00 0.50 C ATOM 5132 CD1 TRP 362 25.141 8.405 57.072 1.00 0.50 C ATOM 5133 CD2 TRP 362 23.801 6.712 56.468 1.00 0.50 C ATOM 5134 NE1 TRP 362 25.685 7.244 57.566 1.00 0.50 N ATOM 5135 CE2 TRP 362 24.883 6.192 57.211 1.00 0.50 C ATOM 5136 CE3 TRP 362 22.824 5.834 55.981 1.00 0.50 C ATOM 5137 CZ2 TRP 362 25.016 4.827 57.478 1.00 0.50 C ATOM 5138 CZ3 TRP 362 22.957 4.477 56.247 1.00 0.50 C ATOM 5139 CH2 TRP 362 24.044 3.987 56.988 1.00 0.50 H ATOM 5150 N ASN 363 22.637 11.130 57.918 1.00 0.50 N ATOM 5151 CA ASN 363 22.980 11.744 59.195 1.00 0.50 C ATOM 5152 C ASN 363 24.223 12.615 59.070 1.00 0.50 C ATOM 5153 O ASN 363 25.059 12.655 59.973 1.00 0.50 O ATOM 5154 CB ASN 363 23.191 10.668 60.267 1.00 0.50 C ATOM 5155 CG ASN 363 23.293 11.252 61.663 1.00 0.50 C ATOM 5156 OD1 ASN 363 22.787 12.346 61.930 1.00 0.50 O ATOM 5157 ND2 ASN 363 23.948 10.532 62.565 1.00 0.50 N ATOM 5164 N PRO 364 24.341 13.311 57.944 1.00 0.50 N ATOM 5165 CA PRO 364 25.484 14.184 57.699 1.00 0.50 C ATOM 5166 C PRO 364 25.596 15.258 58.772 1.00 0.50 C ATOM 5167 O PRO 364 26.621 15.373 59.444 1.00 0.50 O ATOM 5168 CB PRO 364 25.194 14.779 56.319 1.00 0.50 C ATOM 5169 CG PRO 364 24.372 13.726 55.637 1.00 0.50 C ATOM 5170 CD PRO 364 23.500 13.155 56.734 1.00 0.50 C ATOM 5178 N ASN 365 24.537 16.046 58.927 1.00 0.50 N ATOM 5179 CA ASN 365 24.516 17.115 59.920 1.00 0.50 C ATOM 5180 C ASN 365 24.053 18.429 59.304 1.00 0.50 C ATOM 5181 O ASN 365 23.000 18.493 58.672 1.00 0.50 O ATOM 5182 CB ASN 365 25.902 17.284 60.553 1.00 0.50 C ATOM 5183 CG ASN 365 25.880 18.195 61.765 1.00 0.50 C ATOM 5184 OD1 ASN 365 24.843 18.355 62.417 1.00 0.50 O ATOM 5185 ND2 ASN 365 27.018 18.798 62.080 1.00 0.50 N ATOM 5192 N LEU 366 24.849 19.477 59.492 1.00 0.50 N ATOM 5193 CA LEU 366 24.521 20.793 58.956 1.00 0.50 C ATOM 5194 C LEU 366 25.779 21.619 58.720 1.00 0.50 C ATOM 5195 O LEU 366 26.886 21.082 58.669 1.00 0.50 O ATOM 5196 CB LEU 366 23.585 21.539 59.914 1.00 0.50 C ATOM 5197 CG LEU 366 22.207 20.912 60.138 1.00 0.50 C ATOM 5198 CD1 LEU 366 21.460 21.663 61.233 1.00 0.50 C ATOM 5199 CD2 LEU 366 21.407 20.928 58.842 1.00 0.50 C ATOM 5211 N TRP 367 25.602 22.928 58.575 1.00 0.50 N ATOM 5212 CA TRP 367 26.723 23.831 58.343 1.00 0.50 C ATOM 5213 C TRP 367 26.799 24.904 59.423 1.00 0.50 C ATOM 5214 O TRP 367 26.651 26.093 59.141 1.00 0.50 O ATOM 5215 CB TRP 367 26.604 24.489 56.962 1.00 0.50 C ATOM 5216 CG TRP 367 27.785 25.335 56.588 1.00 0.50 C ATOM 5217 CD1 TRP 367 27.845 26.702 56.576 1.00 0.50 C ATOM 5218 CD2 TRP 367 29.073 24.870 56.170 1.00 0.50 C ATOM 5219 NE1 TRP 367 29.095 27.113 56.175 1.00 0.50 N ATOM 5220 CE2 TRP 367 29.865 26.011 55.920 1.00 0.50 C ATOM 5221 CE3 TRP 367 29.631 23.599 55.984 1.00 0.50 C ATOM 5222 CZ2 TRP 367 31.193 25.918 55.493 1.00 0.50 C ATOM 5223 CZ3 TRP 367 30.951 23.508 55.558 1.00 0.50 C ATOM 5224 CH2 TRP 367 31.716 24.659 55.318 1.00 0.50 H ATOM 5235 N LYS 368 27.029 24.476 60.659 1.00 0.50 N ATOM 5236 CA LYS 368 27.123 25.399 61.784 1.00 0.50 C ATOM 5237 C LYS 368 27.261 26.838 61.305 1.00 0.50 C ATOM 5238 O LYS 368 28.068 27.603 61.832 1.00 0.50 O ATOM 5239 CB LYS 368 28.311 25.034 62.677 1.00 0.50 C ATOM 5240 CG LYS 368 28.149 23.706 63.402 1.00 0.50 C ATOM 5241 CD LYS 368 29.353 23.404 64.285 1.00 0.50 C ATOM 5242 CE LYS 368 29.204 22.067 65.002 1.00 0.50 C ATOM 5243 NZ LYS 368 30.387 21.764 65.858 1.00 0.50 N ATOM 5257 N LYS 369 26.469 27.201 60.302 1.00 0.50 N ATOM 5258 CA LYS 369 26.501 28.550 59.750 1.00 0.50 C ATOM 5259 C LYS 369 25.906 29.558 60.723 1.00 0.50 C ATOM 5260 O LYS 369 25.290 29.183 61.721 1.00 0.50 O ATOM 5261 CB LYS 369 25.744 28.602 58.420 1.00 0.50 C ATOM 5262 CG LYS 369 25.778 29.966 57.747 1.00 0.50 C ATOM 5263 CD LYS 369 25.092 29.932 56.388 1.00 0.50 C ATOM 5264 CE LYS 369 24.871 31.335 55.834 1.00 0.50 C ATOM 5265 NZ LYS 369 24.454 31.304 54.402 1.00 0.50 N ATOM 5279 N GLY 370 26.092 30.841 60.428 1.00 0.50 N ATOM 5280 CA GLY 370 25.574 31.906 61.277 1.00 0.50 C ATOM 5281 C GLY 370 24.175 32.324 60.843 1.00 0.50 C ATOM 5282 O GLY 370 23.964 33.451 60.396 1.00 0.50 O ATOM 5286 N THR 371 23.221 31.408 60.976 1.00 0.50 N ATOM 5287 CA THR 371 21.840 31.681 60.598 1.00 0.50 C ATOM 5288 C THR 371 20.912 30.562 61.057 1.00 0.50 C ATOM 5289 O THR 371 21.130 29.952 62.103 1.00 0.50 O ATOM 5290 CB THR 371 21.706 31.857 59.069 1.00 0.50 C ATOM 5291 OG1 THR 371 20.373 32.290 58.769 1.00 0.50 O ATOM 5292 CG2 THR 371 21.986 30.551 58.338 1.00 0.50 C ATOM 5300 N ASN 372 19.876 30.299 60.268 1.00 0.50 N ATOM 5301 CA ASN 372 18.913 29.253 60.591 1.00 0.50 C ATOM 5302 C ASN 372 18.446 28.527 59.337 1.00 0.50 C ATOM 5303 O ASN 372 19.236 27.869 58.659 1.00 0.50 O ATOM 5304 CB ASN 372 17.713 29.845 61.339 1.00 0.50 C ATOM 5305 CG ASN 372 18.122 30.599 62.590 1.00 0.50 C ATOM 5306 OD1 ASN 372 18.709 30.024 63.512 1.00 0.50 O ATOM 5307 ND2 ASN 372 17.819 31.890 62.635 1.00 0.50 N ATOM 5314 N GLY 373 17.158 28.649 59.033 1.00 0.50 N ATOM 5315 CA GLY 373 16.583 28.005 57.859 1.00 0.50 C ATOM 5316 C GLY 373 16.863 26.506 57.861 1.00 0.50 C ATOM 5317 O GLY 373 15.952 25.696 57.693 1.00 0.50 O ATOM 5321 N TYR 374 18.128 26.146 58.049 1.00 0.50 N ATOM 5322 CA TYR 374 18.529 24.745 58.073 1.00 0.50 C ATOM 5323 C TYR 374 17.319 23.824 57.999 1.00 0.50 C ATOM 5324 O TYR 374 16.582 23.670 58.972 1.00 0.50 O ATOM 5325 CB TYR 374 19.333 24.440 59.344 1.00 0.50 C ATOM 5326 CG TYR 374 20.426 25.448 59.627 1.00 0.50 C ATOM 5327 CD1 TYR 374 21.570 25.503 58.834 1.00 0.50 C ATOM 5328 CD2 TYR 374 20.311 26.342 60.688 1.00 0.50 C ATOM 5329 CE1 TYR 374 22.579 26.428 59.092 1.00 0.50 C ATOM 5330 CE2 TYR 374 21.313 27.269 60.956 1.00 0.50 C ATOM 5331 CZ TYR 374 22.442 27.305 60.154 1.00 0.50 C ATOM 5332 OH TYR 374 23.433 28.223 60.416 1.00 0.50 H ATOM 5342 N PRO 375 17.117 23.211 56.836 1.00 0.50 N ATOM 5343 CA PRO 375 15.995 22.304 56.633 1.00 0.50 C ATOM 5344 C PRO 375 16.475 20.871 56.436 1.00 0.50 C ATOM 5345 O PRO 375 15.721 19.920 56.648 1.00 0.50 O ATOM 5346 CB PRO 375 15.307 22.855 55.382 1.00 0.50 C ATOM 5347 CG PRO 375 16.415 23.529 54.628 1.00 0.50 C ATOM 5348 CD PRO 375 17.315 24.096 55.704 1.00 0.50 C ATOM 5356 N ILE 376 17.729 20.723 56.028 1.00 0.50 N ATOM 5357 CA ILE 376 18.322 19.405 55.832 1.00 0.50 C ATOM 5358 C ILE 376 17.988 18.474 56.990 1.00 0.50 C ATOM 5359 O ILE 376 17.800 18.918 58.124 1.00 0.50 O ATOM 5360 CB ILE 376 19.858 19.501 55.676 1.00 0.50 C ATOM 5361 CG1 ILE 376 20.216 20.292 54.412 1.00 0.50 C ATOM 5362 CG2 ILE 376 20.485 18.106 55.636 1.00 0.50 C ATOM 5363 CD1 ILE 376 19.793 19.608 53.121 1.00 0.50 C ATOM 5375 N PHE 377 17.912 17.179 56.700 1.00 0.50 N ATOM 5376 CA PHE 377 17.588 16.183 57.714 1.00 0.50 C ATOM 5377 C PHE 377 18.822 15.789 58.514 1.00 0.50 C ATOM 5378 O PHE 377 19.825 15.352 57.950 1.00 0.50 O ATOM 5379 CB PHE 377 16.971 14.937 57.065 1.00 0.50 C ATOM 5380 CG PHE 377 16.545 13.885 58.059 1.00 0.50 C ATOM 5381 CD1 PHE 377 15.377 14.037 58.795 1.00 0.50 C ATOM 5382 CD2 PHE 377 17.318 12.745 58.252 1.00 0.50 C ATOM 5383 CE1 PHE 377 14.981 13.068 59.714 1.00 0.50 C ATOM 5384 CE2 PHE 377 16.932 11.770 59.168 1.00 0.50 C ATOM 5385 CZ PHE 377 15.761 11.933 59.899 1.00 0.50 C ATOM 5395 N GLN 378 18.744 15.947 59.831 1.00 0.50 N ATOM 5396 CA GLN 378 19.825 15.534 60.718 1.00 0.50 C ATOM 5397 C GLN 378 19.542 14.168 61.330 1.00 0.50 C ATOM 5398 O GLN 378 19.057 14.070 62.457 1.00 0.50 O ATOM 5399 CB GLN 378 20.030 16.569 61.829 1.00 0.50 C ATOM 5400 CG GLN 378 21.214 16.258 62.739 1.00 0.50 C ATOM 5401 CD GLN 378 21.572 17.418 63.650 1.00 0.50 C ATOM 5402 OE1 GLN 378 22.131 18.426 63.205 1.00 0.50 O ATOM 5403 NE2 GLN 378 21.257 17.288 64.935 1.00 0.50 N ATOM 5412 N TRP 379 19.848 13.115 60.580 1.00 0.50 N ATOM 5413 CA TRP 379 19.517 11.756 60.994 1.00 0.50 C ATOM 5414 C TRP 379 20.188 11.405 62.315 1.00 0.50 C ATOM 5415 O TRP 379 20.659 10.283 62.504 1.00 0.50 O ATOM 5416 CB TRP 379 19.935 10.751 59.913 1.00 0.50 C ATOM 5417 CG TRP 379 19.850 9.317 60.350 1.00 0.50 C ATOM 5418 CD1 TRP 379 20.882 8.521 60.760 1.00 0.50 C ATOM 5419 CD2 TRP 379 18.666 8.514 60.416 1.00 0.50 C ATOM 5420 NE1 TRP 379 20.411 7.268 61.079 1.00 0.50 N ATOM 5421 CE2 TRP 379 19.058 7.238 60.877 1.00 0.50 C ATOM 5422 CE3 TRP 379 17.316 8.752 60.133 1.00 0.50 C ATOM 5423 CZ2 TRP 379 18.142 6.198 61.060 1.00 0.50 C ATOM 5424 CZ3 TRP 379 16.406 7.717 60.315 1.00 0.50 C ATOM 5425 CH2 TRP 379 16.824 6.457 60.774 1.00 0.50 H ATOM 5436 N SER 380 20.234 12.370 63.226 1.00 0.50 N ATOM 5437 CA SER 380 20.855 12.166 64.529 1.00 0.50 C ATOM 5438 C SER 380 19.887 11.510 65.504 1.00 0.50 C ATOM 5439 O SER 380 19.296 12.178 66.354 1.00 0.50 O ATOM 5440 CB SER 380 21.344 13.499 65.102 1.00 0.50 C ATOM 5441 OG SER 380 20.266 14.414 65.221 1.00 0.50 O ATOM 5447 N GLU 381 19.725 10.197 65.376 1.00 0.50 N ATOM 5448 CA GLU 381 18.874 9.438 66.285 1.00 0.50 C ATOM 5449 C GLU 381 19.077 9.879 67.729 1.00 0.50 C ATOM 5450 O GLU 381 20.204 9.923 68.222 1.00 0.50 O ATOM 5451 CB GLU 381 19.158 7.937 66.156 1.00 0.50 C ATOM 5452 CG GLU 381 18.782 7.357 64.799 1.00 0.50 C ATOM 5453 CD GLU 381 18.991 5.856 64.711 1.00 0.50 C ATOM 5454 OE1 GLU 381 20.130 5.383 64.917 1.00 0.50 O ATOM 5455 OE2 GLU 381 18.002 5.142 64.419 1.00 0.50 O ATOM 5462 OXT GLU 381 18.111 10.199 68.427 1.00 0.50 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.84 20.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 90.87 18.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 83.38 18.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 91.80 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.87 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 95.71 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 65.88 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.17 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 31.08 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.01 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 66.49 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 72.41 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 71.67 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 50.42 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.82 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 33.67 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 29.61 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 53.82 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 9.11 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 9.11 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 9.11 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.05 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.05 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2595 CRMSCA SECONDARY STRUCTURE . . 4.85 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.36 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.13 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.17 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 4.79 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.49 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.09 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.29 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.78 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.27 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.64 120 100.0 120 CRMSSC BURIED . . . . . . . . 5.65 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.81 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 6.57 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.21 224 100.0 224 CRMSALL BURIED . . . . . . . . 6.05 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.391 0.814 0.407 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 3.707 0.730 0.365 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.726 0.821 0.411 26 100.0 26 ERRCA BURIED . . . . . . . . 4.646 0.780 0.390 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.469 0.815 0.408 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 3.675 0.732 0.366 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.809 0.823 0.411 129 100.0 129 ERRMC BURIED . . . . . . . . 4.566 0.774 0.387 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.439 0.872 0.436 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.966 0.880 0.440 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 6.926 0.832 0.416 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.812 0.876 0.438 120 100.0 120 ERRSC BURIED . . . . . . . . 4.971 0.823 0.412 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.892 0.841 0.421 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 5.081 0.773 0.387 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.318 0.849 0.424 224 100.0 224 ERRALL BURIED . . . . . . . . 4.712 0.786 0.393 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 5 12 25 31 31 DISTCA CA (P) 0.00 3.23 16.13 38.71 80.65 31 DISTCA CA (RMS) 0.00 1.13 2.41 3.28 5.77 DISTCA ALL (N) 0 9 30 73 170 254 254 DISTALL ALL (P) 0.00 3.54 11.81 28.74 66.93 254 DISTALL ALL (RMS) 0.00 1.56 2.32 3.36 5.99 DISTALL END of the results output