####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS452_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS452_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 352 - 365 4.86 18.47 LONGEST_CONTINUOUS_SEGMENT: 14 361 - 374 4.90 17.61 LCS_AVERAGE: 42.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 368 - 374 1.96 22.51 LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.36 27.80 LCS_AVERAGE: 16.96 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 373 - 378 0.99 28.28 LCS_AVERAGE: 13.32 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 13 0 3 3 3 3 3 4 5 6 6 8 9 11 13 13 13 15 16 16 16 LCS_GDT A 352 A 352 3 3 14 0 3 3 3 3 4 5 7 7 8 10 12 13 14 14 15 15 16 16 16 LCS_GDT E 353 E 353 3 3 14 0 3 3 3 3 4 6 7 7 9 10 12 13 14 14 15 15 16 16 16 LCS_GDT E 354 E 354 3 3 14 3 3 3 3 3 4 6 8 8 10 10 12 13 14 14 15 15 16 16 16 LCS_GDT L 355 L 355 3 4 14 3 3 3 4 4 4 6 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT G 356 G 356 3 4 14 3 3 3 4 4 5 6 8 9 10 11 12 12 14 14 15 15 16 16 16 LCS_GDT N 357 N 357 3 4 14 3 3 3 4 4 5 6 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT I 358 I 358 3 4 14 3 3 3 4 4 6 6 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT I 359 I 359 4 5 14 3 3 4 4 5 6 6 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT V 360 V 360 4 5 14 3 3 4 4 5 5 5 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT A 361 A 361 4 5 14 3 3 4 5 5 6 6 8 9 10 11 12 13 14 14 15 15 16 16 16 LCS_GDT W 362 W 362 4 5 14 3 3 4 5 5 6 6 8 9 11 12 12 13 14 14 15 15 16 16 16 LCS_GDT N 363 N 363 4 5 14 3 3 4 5 5 6 7 9 10 11 12 12 13 14 14 15 15 16 16 16 LCS_GDT P 364 P 364 4 5 14 3 3 4 5 5 6 9 9 10 11 12 12 13 14 14 15 15 16 16 16 LCS_GDT N 365 N 365 4 5 14 3 3 4 5 5 6 9 9 10 11 12 12 13 14 14 15 15 16 16 16 LCS_GDT L 366 L 366 3 4 14 3 3 3 4 5 6 9 9 10 11 12 12 12 13 14 15 15 16 16 16 LCS_GDT W 367 W 367 3 4 14 3 3 3 4 5 6 9 9 10 11 12 12 12 12 13 13 13 14 14 16 LCS_GDT K 368 K 368 5 7 14 4 4 5 6 6 6 7 8 10 11 12 12 12 12 13 13 13 14 14 15 LCS_GDT K 369 K 369 5 7 14 4 4 5 6 6 6 9 9 10 11 12 12 12 12 13 13 13 14 14 16 LCS_GDT G 370 G 370 5 7 14 4 4 5 6 6 6 9 9 10 11 12 12 12 12 13 13 13 14 14 16 LCS_GDT T 371 T 371 5 7 14 4 4 5 6 6 6 9 9 10 11 12 12 12 12 13 13 13 14 14 16 LCS_GDT N 372 N 372 5 7 14 3 4 5 6 6 6 9 9 10 11 12 12 12 12 13 13 13 14 14 15 LCS_GDT G 373 G 373 6 7 14 3 5 5 6 7 7 9 9 10 11 12 12 12 12 13 13 13 13 14 14 LCS_GDT Y 374 Y 374 6 7 14 3 5 5 6 7 7 7 8 10 10 11 12 12 12 13 13 13 13 14 14 LCS_GDT P 375 P 375 6 7 12 3 5 5 6 7 7 7 7 8 8 8 8 9 9 10 10 11 12 13 14 LCS_GDT I 376 I 376 6 7 10 3 5 5 6 7 7 7 7 8 8 8 8 9 9 10 10 11 11 13 14 LCS_GDT F 377 F 377 6 7 10 3 5 5 6 7 7 7 7 8 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT Q 378 Q 378 6 7 10 3 3 5 6 7 7 7 7 8 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT W 379 W 379 3 7 10 3 3 4 6 7 7 7 7 8 8 8 8 9 9 10 10 11 11 11 12 LCS_GDT S 380 S 380 3 4 10 3 3 3 3 4 5 5 6 7 8 8 8 9 9 9 9 10 11 11 12 LCS_GDT E 381 E 381 3 4 10 3 3 3 3 4 5 5 5 7 7 7 7 8 9 9 9 10 10 10 10 LCS_AVERAGE LCS_A: 24.21 ( 13.32 16.96 42.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 7 9 9 10 11 12 12 13 14 14 15 15 16 16 16 GDT PERCENT_AT 12.90 16.13 16.13 19.35 22.58 22.58 29.03 29.03 32.26 35.48 38.71 38.71 41.94 45.16 45.16 48.39 48.39 51.61 51.61 51.61 GDT RMS_LOCAL 0.37 0.52 0.52 0.99 1.36 1.36 2.81 2.81 3.17 3.41 3.77 3.77 4.63 4.86 4.86 5.18 5.18 5.56 5.56 5.56 GDT RMS_ALL_AT 17.86 29.11 29.11 28.28 27.80 27.80 20.78 20.78 18.92 18.56 17.57 17.57 18.63 18.47 18.47 17.45 17.45 17.04 17.04 17.04 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 31.235 0 0.046 0.063 31.235 0.000 0.000 LGA A 352 A 352 30.543 0 0.632 0.611 31.267 0.000 0.000 LGA E 353 E 353 27.834 0 0.613 0.723 28.435 0.000 0.000 LGA E 354 E 354 26.402 0 0.627 1.193 29.535 0.000 0.000 LGA L 355 L 355 27.982 0 0.628 0.679 29.801 0.000 0.000 LGA G 356 G 356 27.935 0 0.046 0.046 28.353 0.000 0.000 LGA N 357 N 357 23.762 0 0.595 0.590 26.351 0.000 0.000 LGA I 358 I 358 22.067 0 0.613 0.893 26.413 0.000 0.000 LGA I 359 I 359 21.784 0 0.593 0.657 24.888 0.000 0.000 LGA V 360 V 360 18.465 0 0.629 0.698 22.069 0.000 0.000 LGA A 361 A 361 13.239 0 0.480 0.451 15.407 0.000 0.000 LGA W 362 W 362 12.753 0 0.204 1.166 22.428 0.119 0.034 LGA N 363 N 363 7.116 0 0.309 0.890 9.346 9.643 13.393 LGA P 364 P 364 3.426 0 0.719 0.657 5.198 57.976 47.483 LGA N 365 N 365 3.214 0 0.705 0.619 8.237 59.286 38.333 LGA L 366 L 366 3.040 0 0.588 1.465 7.158 55.476 42.976 LGA W 367 W 367 3.140 0 0.609 1.364 10.805 46.071 19.218 LGA K 368 K 368 5.294 0 0.666 1.239 11.456 40.833 20.106 LGA K 369 K 369 3.013 0 0.014 0.472 5.663 50.119 38.360 LGA G 370 G 370 2.039 0 0.093 0.093 2.039 70.833 70.833 LGA T 371 T 371 2.457 0 0.189 0.168 3.240 63.095 60.612 LGA N 372 N 372 2.354 0 0.718 1.266 6.545 66.905 46.190 LGA G 373 G 373 2.223 0 0.702 0.702 6.420 47.976 47.976 LGA Y 374 Y 374 6.446 0 0.106 1.245 9.822 12.619 37.738 LGA P 375 P 375 13.826 0 0.061 0.369 15.796 0.000 0.000 LGA I 376 I 376 18.231 0 0.173 1.281 21.635 0.000 0.000 LGA F 377 F 377 25.648 0 0.034 0.607 27.322 0.000 0.000 LGA Q 378 Q 378 30.399 0 0.660 0.939 33.713 0.000 0.000 LGA W 379 W 379 35.425 0 0.685 1.239 37.575 0.000 0.000 LGA S 380 S 380 34.817 0 0.164 0.198 36.315 0.000 0.000 LGA E 381 E 381 38.448 1 0.371 0.584 42.674 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 13.585 13.566 14.537 18.740 15.589 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.81 28.226 25.760 0.310 LGA_LOCAL RMSD: 2.807 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 20.784 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 13.585 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.937567 * X + -0.302852 * Y + 0.171020 * Z + -92.269081 Y_new = -0.027894 * X + -0.555605 * Y + -0.830979 * Z + 83.092117 Z_new = 0.346683 * X + 0.774328 * Y + -0.529365 * Z + 105.871727 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.029742 -0.354033 2.170460 [DEG: -1.7041 -20.2846 124.3582 ] ZXZ: 0.202972 2.128648 0.420958 [DEG: 11.6294 121.9625 24.1191 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS452_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS452_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.81 25.760 13.59 REMARK ---------------------------------------------------------- MOLECULE T0537TS452_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1rmg_A ATOM 2529 N SER 351 3.992 -8.094 72.815 1.00 99.90 N ATOM 2530 CA SER 351 4.818 -7.661 73.900 1.00 99.90 C ATOM 2531 C SER 351 5.405 -6.348 73.507 1.00 99.90 C ATOM 2532 O SER 351 5.407 -5.982 72.335 1.00 99.90 O ATOM 2533 CB SER 351 5.990 -8.611 74.198 1.00 99.90 C ATOM 2534 OG SER 351 6.769 -8.807 73.026 1.00 99.90 O ATOM 2535 N ALA 352 5.920 -5.598 74.499 1.00 99.90 N ATOM 2536 CA ALA 352 6.795 -4.512 74.184 1.00 99.90 C ATOM 2537 C ALA 352 8.070 -4.772 74.910 1.00 99.90 C ATOM 2538 O ALA 352 8.067 -5.282 76.029 1.00 99.90 O ATOM 2539 CB ALA 352 6.277 -3.142 74.653 1.00 99.90 C ATOM 2540 N GLU 353 9.209 -4.433 74.278 1.00 99.90 N ATOM 2541 CA GLU 353 10.450 -4.495 74.984 1.00 99.90 C ATOM 2542 C GLU 353 10.882 -3.091 75.231 1.00 99.90 C ATOM 2543 O GLU 353 10.615 -2.197 74.430 1.00 99.90 O ATOM 2544 CB GLU 353 11.574 -5.197 74.202 1.00 99.90 C ATOM 2545 CG GLU 353 12.894 -5.282 74.971 1.00 99.90 C ATOM 2546 CD GLU 353 13.890 -6.046 74.110 1.00 99.90 C ATOM 2547 OE1 GLU 353 13.852 -5.870 72.863 1.00 99.90 O ATOM 2548 OE2 GLU 353 14.703 -6.818 74.688 1.00 99.90 O ATOM 2549 N GLU 354 11.551 -2.861 76.375 1.00 99.90 N ATOM 2550 CA GLU 354 11.999 -1.538 76.686 1.00 99.90 C ATOM 2551 C GLU 354 13.490 -1.554 76.617 1.00 99.90 C ATOM 2552 O GLU 354 14.140 -2.395 77.236 1.00 99.90 O ATOM 2553 CB GLU 354 11.602 -1.087 78.103 1.00 99.90 C ATOM 2554 CG GLU 354 10.091 -0.911 78.285 1.00 99.90 C ATOM 2555 CD GLU 354 9.854 -0.224 79.623 1.00 99.90 C ATOM 2556 OE1 GLU 354 10.349 -0.751 80.656 1.00 99.90 O ATOM 2557 OE2 GLU 354 9.173 0.836 79.631 1.00 99.90 O ATOM 2558 N LEU 355 14.072 -0.619 75.844 1.00 99.90 N ATOM 2559 CA LEU 355 15.496 -0.472 75.850 1.00 99.90 C ATOM 2560 C LEU 355 15.806 0.722 76.682 1.00 99.90 C ATOM 2561 O LEU 355 15.315 1.816 76.420 1.00 99.90 O ATOM 2562 CB LEU 355 16.097 -0.217 74.459 1.00 99.90 C ATOM 2563 CG LEU 355 15.858 -1.370 73.468 1.00 99.90 C ATOM 2564 CD1 LEU 355 16.406 -1.027 72.076 1.00 99.90 C ATOM 2565 CD2 LEU 355 16.404 -2.699 74.017 1.00 99.90 C ATOM 2566 N GLY 356 16.638 0.537 77.722 1.00 99.90 N ATOM 2567 CA GLY 356 16.825 1.588 78.674 1.00 99.90 C ATOM 2568 C GLY 356 17.903 2.478 78.156 1.00 99.90 C ATOM 2569 O GLY 356 17.840 3.697 78.304 1.00 99.90 O ATOM 2570 N ASN 357 18.941 1.882 77.541 1.00 99.90 N ATOM 2571 CA ASN 357 20.111 2.651 77.254 1.00 99.90 C ATOM 2572 C ASN 357 19.894 3.339 75.950 1.00 99.90 C ATOM 2573 O ASN 357 19.053 2.936 75.149 1.00 99.90 O ATOM 2574 CB ASN 357 21.392 1.809 77.133 1.00 99.90 C ATOM 2575 CG ASN 357 21.795 1.377 78.535 1.00 99.90 C ATOM 2576 OD1 ASN 357 21.842 2.188 79.457 1.00 99.90 O ATOM 2577 ND2 ASN 357 22.093 0.060 78.706 1.00 99.90 N ATOM 2578 N ILE 358 20.659 4.420 75.718 1.00 99.90 N ATOM 2579 CA ILE 358 20.663 5.039 74.428 1.00 99.90 C ATOM 2580 C ILE 358 21.676 4.310 73.618 1.00 99.90 C ATOM 2581 O ILE 358 22.768 4.006 74.097 1.00 99.90 O ATOM 2582 CB ILE 358 21.072 6.484 74.463 1.00 99.90 C ATOM 2583 CG1 ILE 358 20.014 7.330 75.192 1.00 99.90 C ATOM 2584 CG2 ILE 358 21.336 6.937 73.019 1.00 99.90 C ATOM 2585 CD1 ILE 358 19.830 6.955 76.661 1.00 99.90 C ATOM 2586 N ILE 359 21.331 3.996 72.356 1.00 99.90 N ATOM 2587 CA ILE 359 22.261 3.291 71.532 1.00 99.90 C ATOM 2588 C ILE 359 23.203 4.306 70.977 1.00 99.90 C ATOM 2589 O ILE 359 22.862 5.478 70.843 1.00 99.90 O ATOM 2590 CB ILE 359 21.613 2.563 70.391 1.00 99.90 C ATOM 2591 CG1 ILE 359 20.524 1.619 70.924 1.00 99.90 C ATOM 2592 CG2 ILE 359 22.715 1.851 69.589 1.00 99.90 C ATOM 2593 CD1 ILE 359 19.747 0.894 69.827 1.00 99.90 C ATOM 2594 N VAL 360 24.438 3.872 70.670 1.00 99.90 N ATOM 2595 CA VAL 360 25.489 4.819 70.464 1.00 99.90 C ATOM 2596 C VAL 360 25.368 5.310 69.061 1.00 99.90 C ATOM 2597 O VAL 360 24.712 4.678 68.233 1.00 99.90 O ATOM 2598 CB VAL 360 26.859 4.222 70.627 1.00 99.90 C ATOM 2599 CG1 VAL 360 27.912 5.340 70.533 1.00 99.90 C ATOM 2600 CG2 VAL 360 26.894 3.450 71.954 1.00 99.90 C ATOM 2601 N ALA 361 26.009 6.461 68.773 1.00 99.90 N ATOM 2602 CA ALA 361 26.054 6.989 67.442 1.00 99.90 C ATOM 2603 C ALA 361 24.661 7.080 66.926 1.00 99.90 C ATOM 2604 O ALA 361 24.239 6.268 66.104 1.00 99.90 O ATOM 2605 CB ALA 361 26.879 6.123 66.473 1.00 99.90 C ATOM 2606 N TRP 362 23.898 8.080 67.407 1.00 99.90 N ATOM 2607 CA TRP 362 22.538 8.178 66.980 1.00 99.90 C ATOM 2608 C TRP 362 22.554 8.606 65.554 1.00 99.90 C ATOM 2609 O TRP 362 22.276 7.810 64.658 1.00 99.90 O ATOM 2610 CB TRP 362 21.682 9.162 67.806 1.00 99.90 C ATOM 2611 CG TRP 362 22.195 10.576 67.957 1.00 99.90 C ATOM 2612 CD1 TRP 362 21.844 11.699 67.264 1.00 99.90 C ATOM 2613 CD2 TRP 362 23.158 10.990 68.939 1.00 99.90 C ATOM 2614 NE1 TRP 362 22.526 12.787 67.757 1.00 99.90 N ATOM 2615 CE2 TRP 362 23.338 12.364 68.789 1.00 99.90 C ATOM 2616 CE3 TRP 362 23.830 10.283 69.895 1.00 99.90 C ATOM 2617 CZ2 TRP 362 24.196 13.056 69.595 1.00 99.90 C ATOM 2618 CZ3 TRP 362 24.699 10.981 70.702 1.00 99.90 C ATOM 2619 CH2 TRP 362 24.879 12.341 70.555 1.00 99.90 H ATOM 2620 N ASN 363 22.900 9.879 65.298 1.00 99.90 N ATOM 2621 CA ASN 363 23.163 10.273 63.949 1.00 99.90 C ATOM 2622 C ASN 363 23.404 11.743 63.951 1.00 99.90 C ATOM 2623 O ASN 363 23.120 12.447 64.920 1.00 99.90 O ATOM 2624 CB ASN 363 21.997 9.994 62.984 1.00 99.90 C ATOM 2625 CG ASN 363 22.541 10.007 61.560 1.00 99.90 C ATOM 2626 OD1 ASN 363 22.438 11.001 60.844 1.00 99.90 O ATOM 2627 ND2 ASN 363 23.142 8.864 61.134 1.00 99.90 N ATOM 2628 N PRO 364 23.946 12.203 62.864 1.00 99.90 N ATOM 2629 CA PRO 364 24.051 13.621 62.688 1.00 99.90 C ATOM 2630 C PRO 364 22.751 14.106 62.139 1.00 99.90 C ATOM 2631 O PRO 364 21.897 13.283 61.818 1.00 99.90 O ATOM 2632 CB PRO 364 25.208 13.873 61.722 1.00 99.90 C ATOM 2633 CG PRO 364 25.939 12.526 61.564 1.00 99.90 C ATOM 2634 CD PRO 364 25.090 11.493 62.318 1.00 99.90 C ATOM 2635 N ASN 365 22.574 15.434 62.021 1.00 99.90 N ATOM 2636 CA ASN 365 21.408 15.924 61.352 1.00 99.90 C ATOM 2637 C ASN 365 21.860 16.553 60.079 1.00 99.90 C ATOM 2638 O ASN 365 23.056 16.635 59.804 1.00 99.90 O ATOM 2639 CB ASN 365 20.643 16.988 62.158 1.00 99.90 C ATOM 2640 CG ASN 365 20.129 16.311 63.419 1.00 99.90 C ATOM 2641 OD1 ASN 365 19.980 15.089 63.462 1.00 99.90 O ATOM 2642 ND2 ASN 365 19.851 17.119 64.477 1.00 99.90 N ATOM 2643 N LEU 366 20.897 17.006 59.254 1.00 99.90 N ATOM 2644 CA LEU 366 21.260 17.715 58.066 1.00 99.90 C ATOM 2645 C LEU 366 20.817 19.129 58.243 1.00 99.90 C ATOM 2646 O LEU 366 19.931 19.424 59.043 1.00 99.90 O ATOM 2647 CB LEU 366 20.586 17.175 56.794 1.00 99.90 C ATOM 2648 CG LEU 366 21.022 15.744 56.428 1.00 99.90 C ATOM 2649 CD1 LEU 366 20.217 15.202 55.237 1.00 99.90 C ATOM 2650 CD2 LEU 366 22.542 15.661 56.214 1.00 99.90 C ATOM 2651 N TRP 367 21.449 20.046 57.488 1.00 99.90 N ATOM 2652 CA TRP 367 21.067 21.425 57.530 1.00 99.90 C ATOM 2653 C TRP 367 19.899 21.572 56.616 1.00 99.90 C ATOM 2654 O TRP 367 19.016 22.399 56.836 1.00 99.90 O ATOM 2655 CB TRP 367 22.176 22.357 57.011 1.00 99.90 C ATOM 2656 CG TRP 367 21.831 23.825 57.051 1.00 99.90 C ATOM 2657 CD1 TRP 367 21.972 24.724 58.067 1.00 99.90 C ATOM 2658 CD2 TRP 367 21.271 24.552 55.945 1.00 99.90 C ATOM 2659 NE1 TRP 367 21.536 25.964 57.665 1.00 99.90 N ATOM 2660 CE2 TRP 367 21.102 25.872 56.359 1.00 99.90 C ATOM 2661 CE3 TRP 367 20.928 24.149 54.684 1.00 99.90 C ATOM 2662 CZ2 TRP 367 20.586 26.815 55.518 1.00 99.90 C ATOM 2663 CZ3 TRP 367 20.405 25.102 53.839 1.00 99.90 C ATOM 2664 CH2 TRP 367 20.237 26.410 54.247 1.00 99.90 H ATOM 2665 N LYS 368 19.870 20.743 55.558 1.00 99.90 N ATOM 2666 CA LYS 368 18.971 20.963 54.465 1.00 99.90 C ATOM 2667 C LYS 368 17.573 20.904 54.985 1.00 99.90 C ATOM 2668 O LYS 368 16.642 21.356 54.318 1.00 99.90 O ATOM 2669 CB LYS 368 19.099 19.896 53.365 1.00 99.90 C ATOM 2670 CG LYS 368 18.077 20.053 52.237 1.00 99.90 C ATOM 2671 CD LYS 368 18.235 21.350 51.443 1.00 99.90 C ATOM 2672 CE LYS 368 17.188 21.525 50.340 1.00 99.90 C ATOM 2673 NZ LYS 368 15.919 22.019 50.919 1.00 99.90 N ATOM 2674 N LYS 369 17.390 20.342 56.194 1.00 99.90 N ATOM 2675 CA LYS 369 16.069 20.060 56.667 1.00 99.90 C ATOM 2676 C LYS 369 15.317 21.344 56.712 1.00 99.90 C ATOM 2677 O LYS 369 15.865 22.391 57.056 1.00 99.90 O ATOM 2678 CB LYS 369 16.035 19.442 58.075 1.00 99.90 C ATOM 2679 CG LYS 369 16.830 18.138 58.185 1.00 99.90 C ATOM 2680 CD LYS 369 17.043 17.665 59.624 1.00 99.90 C ATOM 2681 CE LYS 369 17.490 16.206 59.728 1.00 99.90 C ATOM 2682 NZ LYS 369 16.321 15.337 59.994 1.00 99.90 N ATOM 2683 N GLY 370 14.027 21.295 56.336 1.00 99.90 N ATOM 2684 CA GLY 370 13.278 22.506 56.193 1.00 99.90 C ATOM 2685 C GLY 370 12.794 22.878 57.550 1.00 99.90 C ATOM 2686 O GLY 370 12.267 22.045 58.286 1.00 99.90 O ATOM 2687 N THR 371 12.963 24.161 57.915 1.00 99.90 N ATOM 2688 CA THR 371 12.445 24.609 59.168 1.00 99.90 C ATOM 2689 C THR 371 10.965 24.433 59.100 1.00 99.90 C ATOM 2690 O THR 371 10.384 23.678 59.878 1.00 99.90 O ATOM 2691 CB THR 371 12.749 26.051 59.457 1.00 99.90 C ATOM 2692 OG1 THR 371 12.285 26.886 58.406 1.00 99.90 O ATOM 2693 CG2 THR 371 14.272 26.201 59.612 1.00 99.90 C ATOM 2694 N ASN 372 10.313 25.120 58.145 1.00 99.90 N ATOM 2695 CA ASN 372 8.908 24.926 57.971 1.00 99.90 C ATOM 2696 C ASN 372 8.710 24.263 56.649 1.00 99.90 C ATOM 2697 O ASN 372 9.670 23.939 55.953 1.00 99.90 O ATOM 2698 CB ASN 372 8.109 26.240 57.970 1.00 99.90 C ATOM 2699 CG ASN 372 8.318 26.888 59.332 1.00 99.90 C ATOM 2700 OD1 ASN 372 8.431 26.197 60.342 1.00 99.90 O ATOM 2701 ND2 ASN 372 8.378 28.246 59.364 1.00 99.90 N ATOM 2702 N GLY 373 7.438 24.029 56.280 1.00 99.90 N ATOM 2703 CA GLY 373 7.164 23.322 55.066 1.00 99.90 C ATOM 2704 C GLY 373 6.754 24.337 54.056 1.00 99.90 C ATOM 2705 O GLY 373 6.508 25.496 54.385 1.00 99.90 O ATOM 2706 N TYR 374 6.675 23.916 52.780 1.00 99.90 N ATOM 2707 CA TYR 374 6.258 24.825 51.759 1.00 99.90 C ATOM 2708 C TYR 374 4.802 24.599 51.537 1.00 99.90 C ATOM 2709 O TYR 374 4.317 23.470 51.564 1.00 99.90 O ATOM 2710 CB TYR 374 6.978 24.610 50.418 1.00 99.90 C ATOM 2711 CG TYR 374 8.437 24.744 50.688 1.00 99.90 C ATOM 2712 CD1 TYR 374 9.031 25.986 50.710 1.00 99.90 C ATOM 2713 CD2 TYR 374 9.211 23.632 50.921 1.00 99.90 C ATOM 2714 CE1 TYR 374 10.376 26.116 50.961 1.00 99.90 C ATOM 2715 CE2 TYR 374 10.558 23.755 51.173 1.00 99.90 C ATOM 2716 CZ TYR 374 11.141 24.999 51.192 1.00 99.90 C ATOM 2717 OH TYR 374 12.522 25.128 51.452 1.00 99.90 H ATOM 2718 N PRO 375 4.105 25.685 51.348 1.00 99.90 N ATOM 2719 CA PRO 375 2.686 25.622 51.176 1.00 99.90 C ATOM 2720 C PRO 375 2.386 24.688 50.052 1.00 99.90 C ATOM 2721 O PRO 375 3.069 24.752 49.030 1.00 99.90 O ATOM 2722 CB PRO 375 2.236 27.045 50.858 1.00 99.90 C ATOM 2723 CG PRO 375 3.508 27.777 50.372 1.00 99.90 C ATOM 2724 CD PRO 375 4.674 26.799 50.613 1.00 99.90 C ATOM 2725 N ILE 376 1.378 23.813 50.216 1.00 99.90 N ATOM 2726 CA ILE 376 0.912 23.048 49.100 1.00 99.90 C ATOM 2727 C ILE 376 -0.524 23.398 48.909 1.00 99.90 C ATOM 2728 O ILE 376 -1.275 23.526 49.874 1.00 99.90 O ATOM 2729 CB ILE 376 0.987 21.565 49.321 1.00 99.90 C ATOM 2730 CG1 ILE 376 2.432 21.145 49.636 1.00 99.90 C ATOM 2731 CG2 ILE 376 0.394 20.870 48.083 1.00 99.90 C ATOM 2732 CD1 ILE 376 3.419 21.470 48.516 1.00 99.90 C ATOM 2733 N PHE 377 -0.941 23.577 47.642 1.00 99.90 N ATOM 2734 CA PHE 377 -2.326 23.816 47.383 1.00 99.90 C ATOM 2735 C PHE 377 -2.824 22.681 46.552 1.00 99.90 C ATOM 2736 O PHE 377 -2.088 22.118 45.743 1.00 99.90 O ATOM 2737 CB PHE 377 -2.589 25.114 46.600 1.00 99.90 C ATOM 2738 CG PHE 377 -2.188 26.250 47.478 1.00 99.90 C ATOM 2739 CD1 PHE 377 -0.871 26.644 47.556 1.00 99.90 C ATOM 2740 CD2 PHE 377 -3.127 26.922 48.225 1.00 99.90 C ATOM 2741 CE1 PHE 377 -0.499 27.691 48.367 1.00 99.90 C ATOM 2742 CE2 PHE 377 -2.762 27.970 49.038 1.00 99.90 C ATOM 2743 CZ PHE 377 -1.446 28.357 49.109 1.00 99.90 C ATOM 2744 N GLN 378 -4.099 22.308 46.752 1.00 99.90 N ATOM 2745 CA GLN 378 -4.691 21.294 45.935 1.00 99.90 C ATOM 2746 C GLN 378 -5.530 22.004 44.927 1.00 99.90 C ATOM 2747 O GLN 378 -5.749 23.209 45.026 1.00 99.90 O ATOM 2748 CB GLN 378 -5.613 20.343 46.722 1.00 99.90 C ATOM 2749 CG GLN 378 -6.193 19.206 45.881 1.00 99.90 C ATOM 2750 CD GLN 378 -6.932 18.265 46.824 1.00 99.90 C ATOM 2751 OE1 GLN 378 -6.946 18.466 48.038 1.00 99.90 O ATOM 2752 NE2 GLN 378 -7.564 17.207 46.252 1.00 99.90 N ATOM 2753 N TRP 379 -6.022 21.266 43.913 1.00 99.90 N ATOM 2754 CA TRP 379 -6.939 21.869 42.996 1.00 99.90 C ATOM 2755 C TRP 379 -8.206 22.094 43.743 1.00 99.90 C ATOM 2756 O TRP 379 -8.544 21.343 44.656 1.00 99.90 O ATOM 2757 CB TRP 379 -7.270 20.986 41.782 1.00 99.90 C ATOM 2758 CG TRP 379 -6.138 20.851 40.794 1.00 99.90 C ATOM 2759 CD1 TRP 379 -5.188 19.876 40.695 1.00 99.90 C ATOM 2760 CD2 TRP 379 -5.878 21.785 39.735 1.00 99.90 C ATOM 2761 NE1 TRP 379 -4.353 20.142 39.637 1.00 99.90 N ATOM 2762 CE2 TRP 379 -4.765 21.314 39.038 1.00 99.90 C ATOM 2763 CE3 TRP 379 -6.515 22.936 39.371 1.00 99.90 C ATOM 2764 CZ2 TRP 379 -4.271 21.991 37.962 1.00 99.90 C ATOM 2765 CZ3 TRP 379 -6.010 23.619 38.286 1.00 99.90 C ATOM 2766 CH2 TRP 379 -4.910 23.155 37.595 1.00 99.90 H ATOM 2767 N SER 380 -8.940 23.159 43.373 1.00 99.90 N ATOM 2768 CA SER 380 -10.191 23.408 44.013 1.00 99.90 C ATOM 2769 C SER 380 -11.217 22.613 43.282 1.00 99.90 C ATOM 2770 O SER 380 -10.901 21.871 42.354 1.00 99.90 O ATOM 2771 CB SER 380 -10.624 24.885 43.964 1.00 99.90 C ATOM 2772 OG SER 380 -9.695 25.687 44.676 1.00 99.90 O ATOM 2773 N GLU 381 -12.487 22.745 43.703 1.00 99.90 N ATOM 2774 CA GLU 381 -13.535 22.036 43.035 1.00 99.90 C ATOM 2775 C GLU 381 -13.800 22.768 41.726 1.00 99.90 C ATOM 2776 O GLU 381 -14.962 23.213 41.522 1.00 99.90 O ATOM 2777 CB GLU 381 -14.850 22.008 43.832 1.00 99.90 C ATOM 2778 CG GLU 381 -14.751 21.211 45.134 1.00 99.90 C ATOM 2779 CD GLU 381 -16.102 21.272 45.831 1.00 99.90 C ATOM 2780 OE1 GLU 381 -16.236 20.649 46.919 1.00 99.90 O ATOM 2781 OE2 GLU 381 -17.021 21.942 45.286 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 96.23 45.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 107.98 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 100.19 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 73.34 80.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.25 61.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 70.55 60.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 42.78 87.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 72.90 60.9 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 28.48 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.86 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 74.55 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 61.52 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 74.67 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 32.35 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 44.09 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 45.33 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 48.74 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 44.09 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.02 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 92.02 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 92.02 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.59 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.59 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.4382 CRMSCA SECONDARY STRUCTURE . . 12.98 11 100.0 11 CRMSCA SURFACE . . . . . . . . 13.35 26 100.0 26 CRMSCA BURIED . . . . . . . . 14.77 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.66 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 12.87 54 100.0 54 CRMSMC SURFACE . . . . . . . . 13.48 129 100.0 129 CRMSMC BURIED . . . . . . . . 14.61 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.56 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 15.65 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 13.69 41 100.0 41 CRMSSC SURFACE . . . . . . . . 15.40 119 99.2 120 CRMSSC BURIED . . . . . . . . 17.29 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.62 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 13.29 85 100.0 85 CRMSALL SURFACE . . . . . . . . 14.52 223 99.6 224 CRMSALL BURIED . . . . . . . . 15.32 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 86.964 0.773 0.798 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 87.151 0.774 0.798 11 100.0 11 ERRCA SURFACE . . . . . . . . 87.279 0.778 0.802 26 100.0 26 ERRCA BURIED . . . . . . . . 85.331 0.746 0.775 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 86.916 0.772 0.797 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 87.250 0.776 0.799 54 100.0 54 ERRMC SURFACE . . . . . . . . 87.166 0.777 0.801 129 100.0 129 ERRMC BURIED . . . . . . . . 85.513 0.749 0.778 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 85.202 0.747 0.778 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 85.051 0.744 0.775 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 86.572 0.766 0.791 41 100.0 41 ERRSC SURFACE . . . . . . . . 85.403 0.750 0.780 119 99.2 120 ERRSC BURIED . . . . . . . . 82.821 0.709 0.746 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 86.071 0.760 0.787 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 86.903 0.771 0.795 85 100.0 85 ERRALL SURFACE . . . . . . . . 86.234 0.763 0.790 223 99.6 224 ERRALL BURIED . . . . . . . . 84.856 0.739 0.770 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 31 31 DISTCA CA (P) 0.00 0.00 0.00 0.00 29.03 31 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.07 DISTCA ALL (N) 0 0 0 1 65 253 254 DISTALL ALL (P) 0.00 0.00 0.00 0.39 25.59 254 DISTALL ALL (RMS) 0.00 0.00 0.00 4.94 8.04 DISTALL END of the results output