####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS435_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS435_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 352 - 376 4.88 8.66 LCS_AVERAGE: 72.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.90 15.70 LCS_AVERAGE: 17.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 362 - 366 0.95 8.80 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.67 9.12 LCS_AVERAGE: 12.38 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 3 7 7 8 8 10 11 11 14 15 16 21 24 26 27 LCS_GDT A 352 A 352 3 3 25 3 3 3 3 4 7 8 11 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT E 353 E 353 3 3 25 3 3 3 5 6 8 8 11 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT E 354 E 354 3 4 25 3 3 4 4 4 5 8 11 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT L 355 L 355 3 4 25 3 5 5 5 6 8 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT G 356 G 356 3 4 25 3 3 4 4 4 5 8 11 13 15 17 18 21 24 24 24 25 26 27 27 LCS_GDT N 357 N 357 3 4 25 3 5 5 7 7 10 11 12 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT I 358 I 358 3 4 25 3 3 4 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT I 359 I 359 3 5 25 3 3 5 6 6 8 8 10 13 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT V 360 V 360 3 5 25 3 3 5 5 5 5 6 8 9 11 13 13 18 18 21 24 25 26 27 27 LCS_GDT A 361 A 361 3 6 25 3 3 5 5 6 8 8 11 13 15 17 21 22 24 24 24 25 26 27 27 LCS_GDT W 362 W 362 5 6 25 3 4 5 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT N 363 N 363 5 6 25 3 3 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT P 364 P 364 5 6 25 3 4 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT N 365 N 365 5 6 25 3 4 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT L 366 L 366 5 7 25 3 4 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT W 367 W 367 3 7 25 3 3 4 5 6 8 9 10 12 16 17 21 22 24 24 24 25 26 27 27 LCS_GDT K 368 K 368 4 7 25 3 4 4 5 6 8 9 11 13 16 19 21 22 24 24 24 25 26 27 27 LCS_GDT K 369 K 369 4 7 25 3 4 4 5 7 8 9 11 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT G 370 G 370 4 7 25 3 4 4 5 7 9 10 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT T 371 T 371 4 7 25 3 5 5 7 7 9 10 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT N 372 N 372 5 7 25 3 5 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT G 373 G 373 5 6 25 3 5 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT Y 374 Y 374 5 6 25 3 5 5 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT P 375 P 375 5 6 25 3 5 5 7 8 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 LCS_GDT I 376 I 376 5 6 25 3 5 5 7 7 8 10 12 13 16 17 19 21 24 24 24 25 26 27 27 LCS_GDT F 377 F 377 4 6 17 3 4 5 7 7 8 8 10 13 14 15 18 20 20 22 24 25 26 27 27 LCS_GDT Q 378 Q 378 4 5 12 3 3 5 7 7 7 8 9 13 14 15 17 20 20 22 24 25 26 27 27 LCS_GDT W 379 W 379 3 4 12 3 3 3 4 7 7 7 8 9 10 12 14 18 18 19 20 21 25 25 25 LCS_GDT S 380 S 380 3 4 12 3 3 3 4 7 7 7 8 9 10 15 16 18 18 19 20 21 25 25 25 LCS_GDT E 381 E 381 3 4 12 3 3 3 4 7 7 7 8 9 10 15 16 18 18 19 20 20 25 25 25 LCS_AVERAGE LCS_A: 34.13 ( 12.38 17.17 72.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 7 9 10 11 13 15 17 19 21 22 24 24 24 25 26 27 27 GDT PERCENT_AT 9.68 16.13 19.35 22.58 29.03 32.26 35.48 41.94 48.39 54.84 61.29 67.74 70.97 77.42 77.42 77.42 80.65 83.87 87.10 87.10 GDT RMS_LOCAL 0.04 0.67 1.04 1.25 1.61 1.76 2.05 2.69 3.29 3.53 3.82 4.10 4.25 4.62 4.62 4.62 4.88 5.44 5.57 5.57 GDT RMS_ALL_AT 13.42 9.12 8.45 8.59 8.34 8.35 8.36 8.79 8.57 8.52 8.89 8.88 8.91 8.65 8.65 8.65 8.66 7.97 8.09 8.09 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 13.861 0 0.429 0.471 16.162 0.000 0.000 LGA A 352 A 352 7.848 0 0.631 0.608 9.876 7.738 8.857 LGA E 353 E 353 7.291 0 0.613 1.225 10.036 7.500 5.291 LGA E 354 E 354 6.804 0 0.617 1.492 9.989 18.571 10.053 LGA L 355 L 355 3.498 0 0.622 0.657 7.697 40.833 29.167 LGA G 356 G 356 7.023 0 0.358 0.358 8.365 14.881 14.881 LGA N 357 N 357 6.013 0 0.578 1.038 10.568 30.952 18.333 LGA I 358 I 358 2.842 0 0.600 0.634 5.098 40.952 51.190 LGA I 359 I 359 5.542 0 0.595 0.912 7.918 24.286 20.060 LGA V 360 V 360 9.485 0 0.603 0.630 13.603 2.619 1.497 LGA A 361 A 361 6.791 0 0.696 0.658 8.464 29.405 24.476 LGA W 362 W 362 3.328 0 0.565 1.186 8.825 54.762 31.871 LGA N 363 N 363 1.360 0 0.258 1.263 2.946 81.786 73.393 LGA P 364 P 364 0.538 0 0.049 0.297 1.146 90.595 90.544 LGA N 365 N 365 0.932 0 0.560 0.479 1.616 86.071 83.750 LGA L 366 L 366 1.970 0 0.605 1.048 4.569 63.214 52.619 LGA W 367 W 367 6.562 0 0.552 1.382 16.456 18.810 5.476 LGA K 368 K 368 6.382 0 0.081 0.620 8.093 18.214 13.492 LGA K 369 K 369 6.119 0 0.120 1.107 7.666 21.667 16.508 LGA G 370 G 370 3.925 0 0.315 0.315 6.411 32.262 32.262 LGA T 371 T 371 4.029 0 0.684 0.707 7.877 48.690 33.741 LGA N 372 N 372 1.846 0 0.407 1.268 7.666 68.690 45.833 LGA G 373 G 373 0.907 0 0.555 0.555 1.454 85.952 85.952 LGA Y 374 Y 374 3.001 0 0.156 1.134 11.671 45.833 22.817 LGA P 375 P 375 3.353 0 0.671 0.661 7.295 37.738 57.823 LGA I 376 I 376 6.568 0 0.181 1.300 8.874 15.476 14.940 LGA F 377 F 377 11.269 0 0.158 1.095 19.749 0.119 0.043 LGA Q 378 Q 378 12.548 0 0.673 1.195 14.963 0.000 0.053 LGA W 379 W 379 19.330 0 0.670 1.612 24.182 0.000 0.000 LGA S 380 S 380 19.183 0 0.186 0.237 20.313 0.000 0.000 LGA E 381 E 381 22.503 0 0.651 1.368 28.528 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.437 7.313 8.697 31.859 27.256 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.69 39.516 35.702 0.465 LGA_LOCAL RMSD: 2.695 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.793 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.437 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.399046 * X + 0.898286 * Y + -0.183966 * Z + -5.800722 Y_new = -0.856555 * X + 0.436791 * Y + 0.274822 * Z + 7.133969 Z_new = 0.327223 * X + 0.047911 * Y + 0.943732 * Z + -37.515011 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.134821 -0.333364 0.050724 [DEG: -65.0204 -19.1003 2.9063 ] ZXZ: -2.551698 0.337058 1.425413 [DEG: -146.2015 19.3120 81.6702 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS435_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS435_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.69 35.702 7.44 REMARK ---------------------------------------------------------- MOLECULE T0537TS435_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 5.542 27.905 52.780 1.00204.73 25 ATOM 2530 CA SER 351 4.652 26.963 52.171 1.00204.73 25 ATOM 2531 CB SER 351 3.587 27.626 51.284 1.00204.73 25 ATOM 2532 OG SER 351 4.210 28.250 50.173 1.00204.73 25 ATOM 2533 C SER 351 5.396 25.961 51.349 1.00204.73 25 ATOM 2534 O SER 351 5.191 25.862 50.139 1.00204.73 25 ATOM 2535 N ALA 352 6.299 25.195 51.989 1.00 65.25 25 ATOM 2536 CA ALA 352 6.983 24.157 51.274 1.00 65.25 25 ATOM 2537 CB ALA 352 8.494 24.098 51.568 1.00 65.25 25 ATOM 2538 C ALA 352 6.396 22.864 51.734 1.00 65.25 25 ATOM 2539 O ALA 352 6.211 22.649 52.931 1.00 65.25 25 ATOM 2540 N GLU 353 6.070 21.974 50.775 1.00112.95 25 ATOM 2541 CA GLU 353 5.514 20.695 51.108 1.00112.95 25 ATOM 2542 CB GLU 353 4.297 20.320 50.245 1.00112.95 25 ATOM 2543 CG GLU 353 3.663 18.979 50.613 1.00112.95 25 ATOM 2544 CD GLU 353 2.943 19.159 51.943 1.00112.95 25 ATOM 2545 OE1 GLU 353 3.379 20.040 52.731 1.00112.95 25 ATOM 2546 OE2 GLU 353 1.954 18.419 52.190 1.00112.95 25 ATOM 2547 C GLU 353 6.586 19.695 50.829 1.00112.95 25 ATOM 2548 O GLU 353 7.086 19.596 49.709 1.00112.95 25 ATOM 2549 N GLU 354 6.972 18.923 51.861 1.00 83.77 25 ATOM 2550 CA GLU 354 8.034 17.981 51.689 1.00 83.77 25 ATOM 2551 CB GLU 354 9.266 18.364 52.529 1.00 83.77 25 ATOM 2552 CG GLU 354 10.399 17.341 52.518 1.00 83.77 25 ATOM 2553 CD GLU 354 10.310 16.574 53.828 1.00 83.77 25 ATOM 2554 OE1 GLU 354 9.573 15.554 53.870 1.00 83.77 25 ATOM 2555 OE2 GLU 354 10.970 17.009 54.810 1.00 83.77 25 ATOM 2556 C GLU 354 7.545 16.630 52.103 1.00 83.77 25 ATOM 2557 O GLU 354 7.055 16.445 53.216 1.00 83.77 25 ATOM 2558 N LEU 355 7.650 15.647 51.186 1.00 58.30 25 ATOM 2559 CA LEU 355 7.231 14.311 51.500 1.00 58.30 25 ATOM 2560 CB LEU 355 5.763 14.012 51.149 1.00 58.30 25 ATOM 2561 CG LEU 355 4.737 14.764 52.018 1.00 58.30 25 ATOM 2562 CD1 LEU 355 3.300 14.408 51.607 1.00 58.30 25 ATOM 2563 CD2 LEU 355 4.996 14.528 53.512 1.00 58.30 25 ATOM 2564 C LEU 355 8.048 13.347 50.699 1.00 58.30 25 ATOM 2565 O LEU 355 8.543 13.668 49.618 1.00 58.30 25 ATOM 2566 N GLY 356 8.225 12.129 51.246 1.00 28.47 25 ATOM 2567 CA GLY 356 8.857 11.064 50.526 1.00 28.47 25 ATOM 2568 C GLY 356 10.315 11.327 50.345 1.00 28.47 25 ATOM 2569 O GLY 356 10.911 10.856 49.378 1.00 28.47 25 ATOM 2570 N ASN 357 10.946 12.087 51.255 1.00 90.50 25 ATOM 2571 CA ASN 357 12.348 12.277 51.045 1.00 90.50 25 ATOM 2572 CB ASN 357 12.859 13.656 51.494 1.00 90.50 25 ATOM 2573 CG ASN 357 14.336 13.765 51.133 1.00 90.50 25 ATOM 2574 OD1 ASN 357 15.165 12.967 51.569 1.00 90.50 25 ATOM 2575 ND2 ASN 357 14.679 14.787 50.304 1.00 90.50 25 ATOM 2576 C ASN 357 13.056 11.242 51.854 1.00 90.50 25 ATOM 2577 O ASN 357 13.254 11.408 53.055 1.00 90.50 25 ATOM 2578 N ILE 358 13.443 10.124 51.209 1.00 49.29 25 ATOM 2579 CA ILE 358 14.178 9.128 51.925 1.00 49.29 25 ATOM 2580 CB ILE 358 13.465 7.815 52.055 1.00 49.29 25 ATOM 2581 CG2 ILE 358 14.453 6.789 52.636 1.00 49.29 25 ATOM 2582 CG1 ILE 358 12.188 7.987 52.898 1.00 49.29 25 ATOM 2583 CD1 ILE 358 11.276 6.760 52.888 1.00 49.29 25 ATOM 2584 C ILE 358 15.448 8.899 51.180 1.00 49.29 25 ATOM 2585 O ILE 358 15.444 8.463 50.028 1.00 49.29 25 ATOM 2586 N ILE 359 16.583 9.197 51.838 1.00102.28 25 ATOM 2587 CA ILE 359 17.863 9.025 51.220 1.00102.28 25 ATOM 2588 CB ILE 359 18.556 10.322 50.928 1.00102.28 25 ATOM 2589 CG2 ILE 359 18.757 11.057 52.262 1.00102.28 25 ATOM 2590 CG1 ILE 359 19.860 10.074 50.151 1.00102.28 25 ATOM 2591 CD1 ILE 359 20.517 11.354 49.638 1.00102.28 25 ATOM 2592 C ILE 359 18.736 8.310 52.194 1.00102.28 25 ATOM 2593 O ILE 359 18.584 8.461 53.406 1.00102.28 25 ATOM 2594 N VAL 360 19.664 7.477 51.684 1.00 91.96 25 ATOM 2595 CA VAL 360 20.602 6.852 52.564 1.00 91.96 25 ATOM 2596 CB VAL 360 20.906 5.423 52.210 1.00 91.96 25 ATOM 2597 CG1 VAL 360 22.022 4.916 53.141 1.00 91.96 25 ATOM 2598 CG2 VAL 360 19.608 4.601 52.283 1.00 91.96 25 ATOM 2599 C VAL 360 21.872 7.613 52.379 1.00 91.96 26 ATOM 2600 O VAL 360 22.581 7.402 51.397 1.00 91.96 26 ATOM 2601 N ALA 361 22.180 8.522 53.330 1.00318.59 26 ATOM 2602 CA ALA 361 23.340 9.360 53.225 1.00318.59 26 ATOM 2603 CB ALA 361 23.614 9.892 51.820 1.00318.59 26 ATOM 2604 C ALA 361 23.024 10.585 53.998 1.00318.59 26 ATOM 2605 O ALA 361 22.007 10.623 54.688 1.00318.59 26 ATOM 2606 N TRP 362 23.897 11.613 53.854 1.00344.78 26 ATOM 2607 CA TRP 362 23.729 12.893 54.484 1.00344.78 26 ATOM 2608 CB TRP 362 22.750 13.836 53.753 1.00344.78 26 ATOM 2609 CG TRP 362 22.361 15.065 54.549 1.00344.78 26 ATOM 2610 CD2 TRP 362 20.997 15.442 54.810 1.00344.78 26 ATOM 2611 CD1 TRP 362 23.142 16.031 55.110 1.00344.78 26 ATOM 2612 NE1 TRP 362 22.353 16.978 55.720 1.00344.78 26 ATOM 2613 CE2 TRP 362 21.033 16.631 55.540 1.00344.78 26 ATOM 2614 CE3 TRP 362 19.818 14.849 54.468 1.00344.78 26 ATOM 2615 CZ2 TRP 362 19.878 17.245 55.939 1.00344.78 26 ATOM 2616 CZ3 TRP 362 18.657 15.468 54.875 1.00344.78 26 ATOM 2617 CH2 TRP 362 18.687 16.643 55.597 1.00344.78 26 ATOM 2618 C TRP 362 23.269 12.709 55.877 1.00344.78 26 ATOM 2619 O TRP 362 22.070 12.771 56.145 1.00344.78 26 ATOM 2620 N ASN 363 24.225 12.424 56.780 1.00162.89 26 ATOM 2621 CA ASN 363 23.892 12.181 58.145 1.00162.89 26 ATOM 2622 CB ASN 363 25.113 12.022 59.072 1.00162.89 26 ATOM 2623 CG ASN 363 25.927 13.305 59.033 1.00162.89 26 ATOM 2624 OD1 ASN 363 26.791 13.494 58.178 1.00162.89 26 ATOM 2625 ND2 ASN 363 25.637 14.223 59.988 1.00162.89 26 ATOM 2626 C ASN 363 23.060 13.317 58.620 1.00162.89 26 ATOM 2627 O ASN 363 23.134 14.450 58.141 1.00162.89 26 ATOM 2628 N PRO 364 22.231 12.964 59.550 1.00125.02 26 ATOM 2629 CA PRO 364 21.237 13.823 60.118 1.00125.02 26 ATOM 2630 CD PRO 364 22.320 11.674 60.211 1.00125.02 26 ATOM 2631 CB PRO 364 20.503 12.960 61.149 1.00125.02 26 ATOM 2632 CG PRO 364 21.506 11.845 61.499 1.00125.02 26 ATOM 2633 C PRO 364 21.850 15.050 60.707 1.00125.02 26 ATOM 2634 O PRO 364 21.110 15.992 60.986 1.00125.02 26 ATOM 2635 N ASN 365 23.177 15.076 60.924 1.00 88.83 26 ATOM 2636 CA ASN 365 23.726 16.250 61.536 1.00 88.83 26 ATOM 2637 CB ASN 365 25.125 16.028 62.154 1.00 88.83 26 ATOM 2638 CG ASN 365 25.049 14.982 63.261 1.00 88.83 26 ATOM 2639 OD1 ASN 365 24.296 15.123 64.223 1.00 88.83 26 ATOM 2640 ND2 ASN 365 25.858 13.897 63.124 1.00 88.83 26 ATOM 2641 C ASN 365 23.901 17.305 60.491 1.00 88.83 26 ATOM 2642 O ASN 365 24.889 17.305 59.758 1.00 88.83 26 ATOM 2643 N LEU 366 22.937 18.245 60.392 1.00185.53 26 ATOM 2644 CA LEU 366 23.100 19.321 59.459 1.00185.53 26 ATOM 2645 CB LEU 366 22.017 19.366 58.366 1.00185.53 26 ATOM 2646 CG LEU 366 22.279 20.436 57.295 1.00185.53 26 ATOM 2647 CD1 LEU 366 21.962 21.842 57.806 1.00185.53 26 ATOM 2648 CD2 LEU 366 23.722 20.334 56.778 1.00185.53 26 ATOM 2649 C LEU 366 23.073 20.583 60.268 1.00185.53 26 ATOM 2650 O LEU 366 22.230 20.753 61.148 1.00185.53 26 ATOM 2651 N TRP 367 24.024 21.497 59.994 1.00152.66 26 ATOM 2652 CA TRP 367 24.184 22.687 60.779 1.00152.66 26 ATOM 2653 CB TRP 367 25.444 23.484 60.390 1.00152.66 26 ATOM 2654 CG TRP 367 25.527 24.859 60.997 1.00152.66 26 ATOM 2655 CD2 TRP 367 25.507 25.126 62.411 1.00152.66 26 ATOM 2656 CD1 TRP 367 25.545 26.078 60.380 1.00152.66 26 ATOM 2657 NE1 TRP 367 25.563 27.082 61.315 1.00152.66 26 ATOM 2658 CE2 TRP 367 25.531 26.511 62.569 1.00152.66 26 ATOM 2659 CE3 TRP 367 25.460 24.282 63.481 1.00152.66 26 ATOM 2660 CZ2 TRP 367 25.509 27.076 63.813 1.00152.66 26 ATOM 2661 CZ3 TRP 367 25.448 24.855 64.735 1.00152.66 26 ATOM 2662 CH2 TRP 367 25.472 26.226 64.896 1.00152.66 26 ATOM 2663 C TRP 367 22.991 23.590 60.725 1.00152.66 26 ATOM 2664 O TRP 367 22.450 23.951 61.769 1.00152.66 26 ATOM 2665 N LYS 368 22.525 23.989 59.529 1.00303.75 26 ATOM 2666 CA LYS 368 21.401 24.877 59.551 1.00303.75 26 ATOM 2667 CB LYS 368 21.806 26.359 59.555 1.00303.75 26 ATOM 2668 CG LYS 368 22.708 26.745 58.381 1.00303.75 26 ATOM 2669 CD LYS 368 22.870 28.254 58.196 1.00303.75 26 ATOM 2670 CE LYS 368 23.976 28.630 57.207 1.00303.75 26 ATOM 2671 NZ LYS 368 25.296 28.296 57.783 1.00303.75 26 ATOM 2672 C LYS 368 20.536 24.644 58.352 1.00303.75 26 ATOM 2673 O LYS 368 21.025 24.438 57.242 1.00303.75 26 ATOM 2674 N LYS 369 19.205 24.691 58.578 1.00154.62 26 ATOM 2675 CA LYS 369 18.207 24.502 57.562 1.00154.62 26 ATOM 2676 CB LYS 369 17.267 23.317 57.830 1.00154.62 26 ATOM 2677 CG LYS 369 16.267 23.643 58.950 1.00154.62 26 ATOM 2678 CD LYS 369 15.033 22.737 58.996 1.00154.62 26 ATOM 2679 CE LYS 369 13.934 23.245 59.928 1.00154.62 26 ATOM 2680 NZ LYS 369 12.698 22.456 59.734 1.00154.62 26 ATOM 2681 C LYS 369 17.279 25.671 57.683 1.00154.62 26 ATOM 2682 O LYS 369 17.354 26.414 58.660 1.00154.62 26 ATOM 2683 N GLY 370 16.382 25.882 56.690 1.00142.21 26 ATOM 2684 CA GLY 370 15.435 26.940 56.903 1.00142.21 26 ATOM 2685 C GLY 370 14.280 26.894 55.919 1.00142.21 26 ATOM 2686 O GLY 370 14.359 27.536 54.872 1.00142.21 26 ATOM 2687 N THR 371 13.188 26.136 56.246 1.00185.25 26 ATOM 2688 CA THR 371 11.906 26.098 55.564 1.00185.25 26 ATOM 2689 CB THR 371 11.838 25.298 54.291 1.00185.25 26 ATOM 2690 OG1 THR 371 11.905 23.912 54.571 1.00185.25 26 ATOM 2691 CG2 THR 371 12.999 25.697 53.368 1.00185.25 26 ATOM 2692 C THR 371 10.973 25.399 56.515 1.00185.25 26 ATOM 2693 O THR 371 11.379 24.464 57.200 1.00185.25 26 ATOM 2694 N ASN 372 9.687 25.801 56.578 1.00115.76 26 ATOM 2695 CA ASN 372 8.807 25.177 57.532 1.00115.76 26 ATOM 2696 CB ASN 372 7.384 25.749 57.443 1.00115.76 26 ATOM 2697 CG ASN 372 6.513 25.116 58.519 1.00115.76 26 ATOM 2698 OD1 ASN 372 6.669 25.386 59.709 1.00115.76 26 ATOM 2699 ND2 ASN 372 5.554 24.254 58.085 1.00115.76 27 ATOM 2700 C ASN 372 8.727 23.708 57.245 1.00115.76 27 ATOM 2701 O ASN 372 9.161 22.889 58.053 1.00115.76 27 ATOM 2702 N GLY 373 8.193 23.328 56.066 1.00 91.39 27 ATOM 2703 CA GLY 373 8.144 21.929 55.740 1.00 91.39 27 ATOM 2704 C GLY 373 9.519 21.587 55.279 1.00 91.39 27 ATOM 2705 O GLY 373 9.838 21.694 54.098 1.00 91.39 27 ATOM 2706 N TYR 374 10.371 21.097 56.186 1.00157.37 27 ATOM 2707 CA TYR 374 11.724 20.928 55.759 1.00157.37 27 ATOM 2708 CB TYR 374 12.657 21.971 56.411 1.00157.37 27 ATOM 2709 CG TYR 374 14.034 21.918 55.827 1.00157.37 27 ATOM 2710 CD1 TYR 374 14.333 22.561 54.649 1.00157.37 27 ATOM 2711 CD2 TYR 374 15.041 21.240 56.465 1.00157.37 27 ATOM 2712 CE1 TYR 374 15.601 22.521 54.119 1.00157.37 27 ATOM 2713 CE2 TYR 374 16.312 21.190 55.949 1.00157.37 27 ATOM 2714 CZ TYR 374 16.594 21.830 54.769 1.00157.37 27 ATOM 2715 OH TYR 374 17.896 21.781 54.231 1.00157.37 27 ATOM 2716 C TYR 374 12.186 19.578 56.190 1.00157.37 27 ATOM 2717 O TYR 374 11.655 18.974 57.120 1.00157.37 27 ATOM 2718 N PRO 375 13.168 19.106 55.475 1.00260.36 27 ATOM 2719 CA PRO 375 13.723 17.808 55.730 1.00260.36 27 ATOM 2720 CD PRO 375 13.258 19.460 54.068 1.00260.36 27 ATOM 2721 CB PRO 375 14.571 17.465 54.508 1.00260.36 27 ATOM 2722 CG PRO 375 13.880 18.238 53.373 1.00260.36 27 ATOM 2723 C PRO 375 14.429 17.624 57.027 1.00260.36 27 ATOM 2724 O PRO 375 14.496 16.482 57.475 1.00260.36 27 ATOM 2725 N ILE 376 14.993 18.683 57.637 1.00182.48 27 ATOM 2726 CA ILE 376 15.575 18.451 58.920 1.00182.48 27 ATOM 2727 CB ILE 376 16.216 19.651 59.552 1.00182.48 27 ATOM 2728 CG2 ILE 376 16.601 19.276 60.995 1.00182.48 27 ATOM 2729 CG1 ILE 376 17.414 20.111 58.707 1.00182.48 27 ATOM 2730 CD1 ILE 376 18.508 19.051 58.580 1.00182.48 27 ATOM 2731 C ILE 376 14.404 18.027 59.732 1.00182.48 27 ATOM 2732 O ILE 376 13.328 18.609 59.620 1.00182.48 27 ATOM 2733 N PHE 377 14.565 16.975 60.550 1.00245.95 27 ATOM 2734 CA PHE 377 13.392 16.408 61.138 1.00245.95 27 ATOM 2735 CB PHE 377 13.656 15.022 61.752 1.00245.95 27 ATOM 2736 CG PHE 377 12.348 14.323 61.882 1.00245.95 27 ATOM 2737 CD1 PHE 377 11.817 13.684 60.785 1.00245.95 27 ATOM 2738 CD2 PHE 377 11.647 14.313 63.064 1.00245.95 27 ATOM 2739 CE1 PHE 377 10.611 13.027 60.863 1.00245.95 27 ATOM 2740 CE2 PHE 377 10.441 13.656 63.149 1.00245.95 27 ATOM 2741 CZ PHE 377 9.921 13.014 62.051 1.00245.95 27 ATOM 2742 C PHE 377 12.819 17.306 62.186 1.00245.95 27 ATOM 2743 O PHE 377 13.447 17.598 63.203 1.00245.95 27 ATOM 2744 N GLN 378 11.587 17.777 61.919 1.00295.44 27 ATOM 2745 CA GLN 378 10.796 18.531 62.843 1.00295.44 27 ATOM 2746 CB GLN 378 11.196 20.009 63.037 1.00295.44 27 ATOM 2747 CG GLN 378 12.508 20.188 63.807 1.00295.44 27 ATOM 2748 CD GLN 378 12.568 21.619 64.331 1.00295.44 27 ATOM 2749 OE1 GLN 378 13.507 22.002 65.027 1.00295.44 27 ATOM 2750 NE2 GLN 378 11.526 22.429 64.006 1.00295.44 27 ATOM 2751 C GLN 378 9.399 18.478 62.318 1.00295.44 27 ATOM 2752 O GLN 378 9.180 18.372 61.113 1.00295.44 27 ATOM 2753 N TRP 379 8.412 18.529 63.228 1.00267.25 27 ATOM 2754 CA TRP 379 7.035 18.429 62.851 1.00267.25 27 ATOM 2755 CB TRP 379 6.170 17.816 63.959 1.00267.25 27 ATOM 2756 CG TRP 379 6.444 18.448 65.301 1.00267.25 27 ATOM 2757 CD2 TRP 379 7.498 18.003 66.163 1.00267.25 27 ATOM 2758 CD1 TRP 379 5.843 19.499 65.931 1.00267.25 27 ATOM 2759 NE1 TRP 379 6.463 19.737 67.135 1.00267.25 27 ATOM 2760 CE2 TRP 379 7.484 18.821 67.291 1.00267.25 27 ATOM 2761 CE3 TRP 379 8.411 16.994 66.024 1.00267.25 27 ATOM 2762 CZ2 TRP 379 8.388 18.643 68.300 1.00267.25 27 ATOM 2763 CZ3 TRP 379 9.315 16.810 67.046 1.00267.25 27 ATOM 2764 CH2 TRP 379 9.303 17.621 68.163 1.00267.25 27 ATOM 2765 C TRP 379 6.492 19.779 62.518 1.00267.25 27 ATOM 2766 O TRP 379 6.947 20.801 63.030 1.00267.25 27 ATOM 2767 N SER 380 5.502 19.796 61.605 1.00147.15 27 ATOM 2768 CA SER 380 4.836 20.999 61.204 1.00147.15 27 ATOM 2769 CB SER 380 4.310 20.962 59.758 1.00147.15 27 ATOM 2770 OG SER 380 5.394 20.888 58.843 1.00147.15 27 ATOM 2771 C SER 380 3.662 21.173 62.111 1.00147.15 27 ATOM 2772 O SER 380 3.532 20.474 63.114 1.00147.15 27 ATOM 2773 N GLU 381 2.784 22.140 61.778 1.00 84.62 27 ATOM 2774 CA GLU 381 1.631 22.405 62.588 1.00 84.62 27 ATOM 2775 CB GLU 381 0.870 21.140 63.032 1.00 84.62 27 ATOM 2776 CG GLU 381 0.012 20.504 61.938 1.00 84.62 27 ATOM 2777 CD GLU 381 -1.284 21.298 61.863 1.00 84.62 27 ATOM 2778 OE1 GLU 381 -1.354 22.377 62.510 1.00 84.62 27 ATOM 2779 OE2 GLU 381 -2.224 20.835 61.162 1.00 84.62 27 ATOM 2780 C GLU 381 2.096 23.131 63.841 1.00 84.62 27 ATOM 2781 O GLU 381 1.215 23.596 64.613 1.00 84.62 27 ATOM 2782 OXT GLU 381 3.336 23.236 64.040 1.00 84.62 27 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 104.88 18.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 122.54 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 104.38 20.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 107.33 10.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.16 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 81.75 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 80.92 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 82.26 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 61.75 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.80 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 85.55 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 66.82 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 86.81 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 7.43 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.19 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 46.87 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 62.17 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 72.19 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.84 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 77.84 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 77.84 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.44 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.44 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2399 CRMSCA SECONDARY STRUCTURE . . 6.26 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.41 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.58 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.53 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.32 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.51 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.65 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.03 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.30 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.38 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.12 120 100.0 120 CRMSSC BURIED . . . . . . . . 8.82 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.81 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.29 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.91 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.00 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 151.417 0.894 0.902 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 116.511 0.852 0.867 11 100.0 11 ERRCA SURFACE . . . . . . . . 157.879 0.906 0.912 26 100.0 26 ERRCA BURIED . . . . . . . . 117.818 0.829 0.848 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.714 0.894 0.902 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 118.222 0.855 0.869 54 100.0 54 ERRMC SURFACE . . . . . . . . 158.327 0.903 0.910 129 100.0 129 ERRMC BURIED . . . . . . . . 121.230 0.840 0.856 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 168.715 0.878 0.888 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 174.246 0.878 0.888 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 145.680 0.842 0.859 41 100.0 41 ERRSC SURFACE . . . . . . . . 171.212 0.879 0.889 120 100.0 120 ERRSC BURIED . . . . . . . . 138.754 0.861 0.873 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 160.301 0.886 0.895 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 130.653 0.849 0.864 85 100.0 85 ERRALL SURFACE . . . . . . . . 165.058 0.892 0.900 224 100.0 224 ERRALL BURIED . . . . . . . . 124.786 0.844 0.859 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 11 25 31 31 DISTCA CA (P) 0.00 6.45 16.13 35.48 80.65 31 DISTCA CA (RMS) 0.00 1.61 2.29 3.33 5.83 DISTCA ALL (N) 0 12 29 72 170 254 254 DISTALL ALL (P) 0.00 4.72 11.42 28.35 66.93 254 DISTALL ALL (RMS) 0.00 1.67 2.26 3.40 5.96 DISTALL END of the results output