####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS429_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS429_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 355 - 375 4.96 9.51 LCS_AVERAGE: 59.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.72 16.12 LCS_AVERAGE: 17.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.75 17.14 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.45 10.32 LCS_AVERAGE: 12.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 11 3 3 5 5 5 5 5 7 7 7 9 12 14 15 16 17 19 24 25 26 LCS_GDT A 352 A 352 3 3 14 3 3 3 4 7 7 9 10 12 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT E 353 E 353 3 5 15 3 3 3 6 7 7 9 10 12 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT E 354 E 354 4 5 15 3 4 4 4 7 7 9 10 12 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT L 355 L 355 4 5 21 3 4 4 5 6 7 9 10 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT G 356 G 356 4 5 21 3 4 4 4 4 5 6 7 11 13 14 18 20 22 22 23 25 25 25 26 LCS_GDT N 357 N 357 4 5 21 3 4 4 5 8 8 8 10 12 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT I 358 I 358 3 5 21 3 3 4 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT I 359 I 359 3 5 21 3 3 3 5 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT V 360 V 360 3 5 21 3 3 3 5 5 6 6 7 10 11 14 17 18 21 22 23 25 25 25 26 LCS_GDT A 361 A 361 3 5 21 1 3 3 5 5 6 7 8 10 12 14 18 20 22 22 23 25 25 25 26 LCS_GDT W 362 W 362 4 5 21 3 3 4 5 5 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT N 363 N 363 4 5 21 3 3 4 5 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT P 364 P 364 4 5 21 3 3 4 5 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT N 365 N 365 4 6 21 3 3 4 5 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT L 366 L 366 4 7 21 3 4 5 5 7 7 9 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT W 367 W 367 4 7 21 3 4 5 6 7 7 9 10 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT K 368 K 368 5 7 21 3 4 5 6 7 7 9 10 11 13 14 16 19 21 22 23 24 25 25 26 LCS_GDT K 369 K 369 5 7 21 3 4 5 6 7 7 9 10 11 13 13 16 18 20 22 23 24 25 25 26 LCS_GDT G 370 G 370 5 7 21 3 4 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT T 371 T 371 5 7 21 3 4 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT N 372 N 372 5 7 21 4 5 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT G 373 G 373 5 6 21 4 5 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT Y 374 Y 374 5 6 21 4 5 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 LCS_GDT P 375 P 375 5 6 21 3 5 5 6 8 8 9 10 13 15 17 19 20 22 22 23 25 25 25 26 LCS_GDT I 376 I 376 5 6 16 4 5 5 6 8 8 9 10 11 13 14 16 20 22 22 23 25 25 25 26 LCS_GDT F 377 F 377 4 6 15 3 3 4 5 6 7 9 10 11 13 14 15 16 18 20 22 25 25 25 26 LCS_GDT Q 378 Q 378 4 5 12 3 3 4 5 5 6 9 10 10 12 14 15 16 18 21 23 25 25 25 26 LCS_GDT W 379 W 379 3 4 12 3 3 3 4 4 5 7 8 9 11 12 13 14 17 18 19 20 23 25 26 LCS_GDT S 380 S 380 3 4 12 3 3 3 4 4 5 6 8 8 9 10 15 16 17 18 19 20 23 25 26 LCS_GDT E 381 E 381 3 4 12 3 3 3 4 4 5 6 8 8 9 12 15 16 17 18 19 20 23 25 26 LCS_AVERAGE LCS_A: 30.04 ( 12.80 17.48 59.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 8 8 10 12 13 16 17 19 20 22 22 23 25 25 25 26 GDT PERCENT_AT 12.90 16.13 16.13 19.35 25.81 25.81 32.26 38.71 41.94 51.61 54.84 61.29 64.52 70.97 70.97 74.19 80.65 80.65 80.65 83.87 GDT RMS_LOCAL 0.28 0.45 0.45 1.27 1.87 1.87 2.58 3.03 3.20 3.89 4.00 4.28 4.48 4.86 4.80 4.98 5.79 5.41 5.41 5.78 GDT RMS_ALL_AT 10.37 10.32 10.32 16.09 9.61 9.61 10.43 9.73 9.69 9.28 9.31 9.22 9.14 8.93 9.30 9.47 8.37 9.25 9.25 9.32 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 15.395 0 0.470 0.479 17.906 0.000 0.000 LGA A 352 A 352 9.589 0 0.625 0.594 11.617 2.619 2.381 LGA E 353 E 353 8.884 0 0.591 0.801 13.125 1.429 0.635 LGA E 354 E 354 8.354 0 0.597 0.987 14.442 9.048 4.180 LGA L 355 L 355 5.240 0 0.036 1.358 8.612 23.929 18.393 LGA G 356 G 356 7.731 0 0.261 0.261 9.092 9.286 9.286 LGA N 357 N 357 7.245 0 0.582 0.877 10.679 16.548 9.405 LGA I 358 I 358 3.605 0 0.090 1.294 4.832 42.024 48.750 LGA I 359 I 359 3.580 0 0.566 0.921 5.203 34.762 36.250 LGA V 360 V 360 8.228 0 0.145 0.225 12.307 10.357 5.918 LGA A 361 A 361 6.781 0 0.630 0.565 8.295 20.238 17.143 LGA W 362 W 362 3.213 0 0.594 1.330 9.024 48.571 37.211 LGA N 363 N 363 2.298 0 0.186 1.301 6.260 67.024 50.357 LGA P 364 P 364 2.067 0 0.662 0.728 3.227 75.238 71.020 LGA N 365 N 365 2.784 0 0.694 1.289 8.199 55.595 35.238 LGA L 366 L 366 4.324 0 0.583 1.339 10.813 48.690 26.369 LGA W 367 W 367 4.998 0 0.055 1.253 12.854 24.405 10.408 LGA K 368 K 368 7.225 0 0.138 1.283 7.680 11.071 16.720 LGA K 369 K 369 8.707 0 0.514 0.468 20.474 8.571 3.810 LGA G 370 G 370 3.012 0 0.024 0.024 4.956 42.143 42.143 LGA T 371 T 371 3.127 0 0.632 1.376 6.734 57.500 45.442 LGA N 372 N 372 2.764 0 0.179 0.674 9.309 58.214 36.131 LGA G 373 G 373 1.310 0 0.261 0.261 1.476 81.429 81.429 LGA Y 374 Y 374 3.173 0 0.099 1.142 13.312 44.881 19.722 LGA P 375 P 375 4.961 0 0.695 0.647 8.914 22.738 41.224 LGA I 376 I 376 8.817 0 0.247 1.402 11.012 4.405 3.274 LGA F 377 F 377 13.966 0 0.188 1.122 22.540 0.000 0.000 LGA Q 378 Q 378 15.062 0 0.662 1.180 17.289 0.000 0.000 LGA W 379 W 379 21.458 0 0.616 1.623 27.258 0.000 0.000 LGA S 380 S 380 20.407 0 0.130 0.179 21.744 0.000 0.000 LGA E 381 E 381 23.251 0 0.262 1.287 27.615 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.936 7.792 9.307 26.475 21.704 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 3.03 37.097 32.794 0.383 LGA_LOCAL RMSD: 3.033 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.732 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.936 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.149792 * X + 0.526333 * Y + 0.836980 * Z + -43.271263 Y_new = -0.496753 * X + -0.771993 * Y + 0.396564 * Z + 32.929672 Z_new = 0.854868 * X + -0.356370 * Y + 0.377096 * Z + 4.337370 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.863667 -1.025296 -0.757149 [DEG: -106.7802 -58.7451 -43.3815 ] ZXZ: 2.013268 1.184138 1.965762 [DEG: 115.3518 67.8461 112.6299 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS429_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS429_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 3.03 32.794 7.94 REMARK ---------------------------------------------------------- MOLECULE T0537TS429_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT 1NHC_F 1K5C_A 1HG8_A 1IA5_A 2IQ7_A 1RMG_A ATOM 2529 N SER 351 7.442 29.353 52.619 1.00 0.00 N ATOM 2530 CA SER 351 6.517 28.406 52.002 1.00 0.00 C ATOM 2531 C SER 351 7.151 27.416 51.015 1.00 0.00 C ATOM 2532 O SER 351 6.730 27.355 49.866 1.00 0.00 O ATOM 2533 CB SER 351 5.309 29.150 51.365 1.00 0.00 C ATOM 2534 OG SER 351 5.597 30.080 50.318 1.00 0.00 O ATOM 2535 N ALA 352 8.158 26.664 51.462 1.00 0.00 N ATOM 2536 CA ALA 352 8.734 25.563 50.686 1.00 0.00 C ATOM 2537 C ALA 352 8.109 24.226 51.158 1.00 0.00 C ATOM 2538 O ALA 352 8.320 23.882 52.333 1.00 0.00 O ATOM 2539 CB ALA 352 10.250 25.565 50.908 1.00 0.00 C ATOM 2540 N GLU 353 7.140 23.667 50.391 1.00 0.00 N ATOM 2541 CA GLU 353 6.458 22.403 50.692 1.00 0.00 C ATOM 2542 C GLU 353 7.227 21.193 50.147 1.00 0.00 C ATOM 2543 O GLU 353 7.353 21.050 48.936 1.00 0.00 O ATOM 2544 CB GLU 353 5.048 22.502 50.068 1.00 0.00 C ATOM 2545 CG GLU 353 4.164 21.256 50.222 1.00 0.00 C ATOM 2546 CD GLU 353 3.145 21.063 49.088 1.00 0.00 C ATOM 2547 OE1 GLU 353 3.479 21.314 47.908 1.00 0.00 O ATOM 2548 OE2 GLU 353 2.006 20.662 49.410 1.00 0.00 O ATOM 2549 N GLU 354 7.752 20.343 51.021 1.00 0.00 N ATOM 2550 CA GLU 354 8.476 19.175 50.586 1.00 0.00 C ATOM 2551 C GLU 354 7.756 17.890 51.028 1.00 0.00 C ATOM 2552 O GLU 354 7.846 17.519 52.203 1.00 0.00 O ATOM 2553 CB GLU 354 9.844 19.303 51.223 1.00 0.00 C ATOM 2554 CG GLU 354 10.587 20.518 50.669 1.00 0.00 C ATOM 2555 CD GLU 354 11.812 20.926 51.473 1.00 0.00 C ATOM 2556 OE1 GLU 354 12.445 20.086 52.154 1.00 0.00 O ATOM 2557 OE2 GLU 354 12.201 22.105 51.319 1.00 0.00 O ATOM 2558 N LEU 355 7.015 17.219 50.123 1.00 0.00 N ATOM 2559 CA LEU 355 6.270 16.008 50.478 1.00 0.00 C ATOM 2560 C LEU 355 7.003 14.688 50.196 1.00 0.00 C ATOM 2561 O LEU 355 6.870 13.745 50.967 1.00 0.00 O ATOM 2562 CB LEU 355 4.943 16.012 49.692 1.00 0.00 C ATOM 2563 CG LEU 355 3.964 14.881 50.069 1.00 0.00 C ATOM 2564 CD1 LEU 355 3.458 14.979 51.510 1.00 0.00 C ATOM 2565 CD2 LEU 355 2.771 14.904 49.123 1.00 0.00 C ATOM 2566 N GLY 356 7.733 14.595 49.089 1.00 0.00 N ATOM 2567 CA GLY 356 8.189 13.321 48.556 1.00 0.00 C ATOM 2568 C GLY 356 9.627 12.892 48.897 1.00 0.00 C ATOM 2569 O GLY 356 10.069 11.858 48.387 1.00 0.00 O ATOM 2570 N ASN 357 10.405 13.662 49.644 1.00 0.00 N ATOM 2571 CA ASN 357 11.774 13.206 49.873 1.00 0.00 C ATOM 2572 C ASN 357 11.877 11.992 50.828 1.00 0.00 C ATOM 2573 O ASN 357 11.598 12.149 52.021 1.00 0.00 O ATOM 2574 CB ASN 357 12.584 14.388 50.420 1.00 0.00 C ATOM 2575 CG ASN 357 14.080 14.087 50.492 1.00 0.00 C ATOM 2576 OD1 ASN 357 14.495 12.924 50.569 1.00 0.00 O ATOM 2577 ND2 ASN 357 14.906 15.136 50.506 1.00 0.00 N ATOM 2578 N ILE 358 12.244 10.796 50.330 1.00 0.00 N ATOM 2579 CA ILE 358 12.457 9.642 51.213 1.00 0.00 C ATOM 2580 C ILE 358 13.777 9.682 52.039 1.00 0.00 C ATOM 2581 O ILE 358 13.781 9.204 53.170 1.00 0.00 O ATOM 2582 CB ILE 358 12.382 8.314 50.416 1.00 0.00 C ATOM 2583 CG1 ILE 358 12.296 7.070 51.327 1.00 0.00 C ATOM 2584 CG2 ILE 358 13.604 8.143 49.515 1.00 0.00 C ATOM 2585 CD1 ILE 358 11.082 7.090 52.249 1.00 0.00 C ATOM 2586 N ILE 359 14.870 10.235 51.496 1.00 0.00 N ATOM 2587 CA ILE 359 16.139 10.528 52.175 1.00 0.00 C ATOM 2588 C ILE 359 16.758 9.339 52.970 1.00 0.00 C ATOM 2589 O ILE 359 16.414 9.141 54.129 1.00 0.00 O ATOM 2590 CB ILE 359 15.887 11.825 53.025 1.00 0.00 C ATOM 2591 CG1 ILE 359 17.208 12.517 53.396 1.00 0.00 C ATOM 2592 CG2 ILE 359 15.037 11.656 54.302 1.00 0.00 C ATOM 2593 CD1 ILE 359 17.051 13.860 54.115 1.00 0.00 C ATOM 2594 N VAL 360 17.682 8.525 52.399 1.00 0.00 N ATOM 2595 CA VAL 360 18.242 7.367 53.141 1.00 0.00 C ATOM 2596 C VAL 360 19.697 7.446 53.710 1.00 0.00 C ATOM 2597 O VAL 360 19.867 7.497 54.936 1.00 0.00 O ATOM 2598 CB VAL 360 18.169 6.072 52.295 1.00 0.00 C ATOM 2599 CG1 VAL 360 18.433 4.842 53.165 1.00 0.00 C ATOM 2600 CG2 VAL 360 16.812 5.882 51.622 1.00 0.00 C ATOM 2601 N ALA 361 20.741 7.161 52.911 1.00 0.00 N ATOM 2602 CA ALA 361 22.105 6.985 53.442 1.00 0.00 C ATOM 2603 C ALA 361 22.801 8.312 53.732 1.00 0.00 C ATOM 2604 O ALA 361 23.037 9.033 52.787 1.00 0.00 O ATOM 2605 CB ALA 361 22.901 6.181 52.417 1.00 0.00 C ATOM 2606 N TRP 362 23.084 8.633 54.995 1.00 0.00 N ATOM 2607 CA TRP 362 23.688 9.879 55.449 1.00 0.00 C ATOM 2608 C TRP 362 23.605 9.893 56.972 1.00 0.00 C ATOM 2609 O TRP 362 23.154 8.943 57.621 1.00 0.00 O ATOM 2610 CB TRP 362 22.988 11.096 54.860 1.00 0.00 C ATOM 2611 CG TRP 362 21.514 10.962 54.746 1.00 0.00 C ATOM 2612 CD1 TRP 362 20.871 10.913 53.566 1.00 0.00 C ATOM 2613 CD2 TRP 362 20.519 10.653 55.775 1.00 0.00 C ATOM 2614 NE1 TRP 362 19.529 10.724 53.818 1.00 0.00 N ATOM 2615 CE2 TRP 362 19.242 10.608 55.162 1.00 0.00 C ATOM 2616 CE3 TRP 362 20.569 10.353 57.152 1.00 0.00 C ATOM 2617 CZ2 TRP 362 18.057 10.412 55.895 1.00 0.00 C ATOM 2618 CZ3 TRP 362 19.395 10.095 57.892 1.00 0.00 C ATOM 2619 CH2 TRP 362 18.130 10.163 57.275 1.00 0.00 H ATOM 2620 N ASN 363 24.093 10.973 57.562 1.00 0.00 N ATOM 2621 CA ASN 363 23.758 11.366 58.909 1.00 0.00 C ATOM 2622 C ASN 363 23.314 12.793 58.706 1.00 0.00 C ATOM 2623 O ASN 363 24.153 13.557 58.234 1.00 0.00 O ATOM 2624 CB ASN 363 24.980 11.242 59.842 1.00 0.00 C ATOM 2625 CG ASN 363 25.817 9.947 59.747 1.00 0.00 C ATOM 2626 OD1 ASN 363 27.041 10.058 59.789 1.00 0.00 O ATOM 2627 ND2 ASN 363 25.244 8.737 59.678 1.00 0.00 N ATOM 2628 N PRO 364 22.019 13.123 58.840 1.00 0.00 N ATOM 2629 CA PRO 364 21.586 14.466 58.520 1.00 0.00 C ATOM 2630 C PRO 364 22.395 15.434 59.341 1.00 0.00 C ATOM 2631 O PRO 364 22.470 15.317 60.569 1.00 0.00 O ATOM 2632 CB PRO 364 20.099 14.534 58.856 1.00 0.00 C ATOM 2633 CG PRO 364 19.886 13.400 59.850 1.00 0.00 C ATOM 2634 CD PRO 364 20.938 12.367 59.445 1.00 0.00 C ATOM 2635 N ASN 365 22.958 16.423 58.678 1.00 0.00 N ATOM 2636 CA ASN 365 23.685 17.475 59.356 1.00 0.00 C ATOM 2637 C ASN 365 22.729 18.543 59.902 1.00 0.00 C ATOM 2638 O ASN 365 21.645 18.725 59.346 1.00 0.00 O ATOM 2639 CB ASN 365 24.650 18.083 58.334 1.00 0.00 C ATOM 2640 CG ASN 365 25.230 19.442 58.753 1.00 0.00 C ATOM 2641 OD1 ASN 365 24.658 20.456 58.358 1.00 0.00 O ATOM 2642 ND2 ASN 365 26.359 19.505 59.478 1.00 0.00 N ATOM 2643 N LEU 366 23.126 19.186 61.011 1.00 0.00 N ATOM 2644 CA LEU 366 22.339 20.228 61.641 1.00 0.00 C ATOM 2645 C LEU 366 22.104 21.416 60.698 1.00 0.00 C ATOM 2646 O LEU 366 23.062 22.025 60.238 1.00 0.00 O ATOM 2647 CB LEU 366 23.073 20.677 62.912 1.00 0.00 C ATOM 2648 CG LEU 366 22.231 21.274 64.046 1.00 0.00 C ATOM 2649 CD1 LEU 366 23.015 22.401 64.697 1.00 0.00 C ATOM 2650 CD2 LEU 366 20.871 21.814 63.616 1.00 0.00 C ATOM 2651 N TRP 367 20.844 21.783 60.472 1.00 0.00 N ATOM 2652 CA TRP 367 20.453 22.847 59.576 1.00 0.00 C ATOM 2653 C TRP 367 20.201 24.208 60.267 1.00 0.00 C ATOM 2654 O TRP 367 20.063 24.296 61.488 1.00 0.00 O ATOM 2655 CB TRP 367 19.194 22.331 58.881 1.00 0.00 C ATOM 2656 CG TRP 367 18.101 21.736 59.729 1.00 0.00 C ATOM 2657 CD1 TRP 367 17.983 20.446 60.118 1.00 0.00 C ATOM 2658 CD2 TRP 367 16.955 22.432 60.301 1.00 0.00 C ATOM 2659 NE1 TRP 367 16.863 20.319 60.927 1.00 0.00 N ATOM 2660 CE2 TRP 367 16.181 21.506 61.055 1.00 0.00 C ATOM 2661 CE3 TRP 367 16.481 23.758 60.238 1.00 0.00 C ATOM 2662 CZ2 TRP 367 14.990 21.861 61.715 1.00 0.00 C ATOM 2663 CZ3 TRP 367 15.293 24.143 60.899 1.00 0.00 C ATOM 2664 CH2 TRP 367 14.543 23.197 61.631 1.00 0.00 H ATOM 2665 N LYS 368 20.091 25.311 59.527 1.00 0.00 N ATOM 2666 CA LYS 368 19.868 26.552 60.217 1.00 0.00 C ATOM 2667 C LYS 368 18.737 27.331 59.559 1.00 0.00 C ATOM 2668 O LYS 368 18.787 27.579 58.362 1.00 0.00 O ATOM 2669 CB LYS 368 21.168 27.374 60.230 1.00 0.00 C ATOM 2670 CG LYS 368 21.149 28.483 61.293 1.00 0.00 C ATOM 2671 CD LYS 368 21.302 27.848 62.672 1.00 0.00 C ATOM 2672 CE LYS 368 20.599 28.491 63.861 1.00 0.00 C ATOM 2673 NZ LYS 368 19.136 28.280 63.853 1.00 0.00 N ATOM 2674 N LYS 369 17.721 27.710 60.349 1.00 0.00 N ATOM 2675 CA LYS 369 16.574 28.513 59.883 1.00 0.00 C ATOM 2676 C LYS 369 15.891 28.087 58.554 1.00 0.00 C ATOM 2677 O LYS 369 15.536 28.941 57.730 1.00 0.00 O ATOM 2678 CB LYS 369 17.011 29.974 59.803 1.00 0.00 C ATOM 2679 CG LYS 369 17.537 30.377 61.199 1.00 0.00 C ATOM 2680 CD LYS 369 18.075 31.808 61.350 1.00 0.00 C ATOM 2681 CE LYS 369 18.418 32.251 62.771 1.00 0.00 C ATOM 2682 NZ LYS 369 19.203 33.522 62.794 1.00 0.00 N ATOM 2683 N GLY 370 15.585 26.795 58.417 1.00 0.00 N ATOM 2684 CA GLY 370 14.819 26.321 57.269 1.00 0.00 C ATOM 2685 C GLY 370 13.352 26.725 57.457 1.00 0.00 C ATOM 2686 O GLY 370 12.952 26.957 58.607 1.00 0.00 O ATOM 2687 N THR 371 12.536 26.878 56.404 1.00 0.00 N ATOM 2688 CA THR 371 11.130 27.274 56.639 1.00 0.00 C ATOM 2689 C THR 371 10.339 26.137 57.350 1.00 0.00 C ATOM 2690 O THR 371 10.889 25.054 57.561 1.00 0.00 O ATOM 2691 CB THR 371 10.490 27.695 55.286 1.00 0.00 C ATOM 2692 OG1 THR 371 9.320 28.494 55.466 1.00 0.00 O ATOM 2693 CG2 THR 371 10.083 26.529 54.404 1.00 0.00 C ATOM 2694 N ASN 372 9.111 26.383 57.822 1.00 0.00 N ATOM 2695 CA ASN 372 8.338 25.375 58.546 1.00 0.00 C ATOM 2696 C ASN 372 8.130 24.093 57.708 1.00 0.00 C ATOM 2697 O ASN 372 7.848 23.080 58.320 1.00 0.00 O ATOM 2698 CB ASN 372 6.995 26.041 58.928 1.00 0.00 C ATOM 2699 CG ASN 372 5.842 25.149 59.431 1.00 0.00 C ATOM 2700 OD1 ASN 372 5.250 24.443 58.606 1.00 0.00 O ATOM 2701 ND2 ASN 372 5.452 25.270 60.709 1.00 0.00 N ATOM 2702 N GLY 373 8.372 24.076 56.383 1.00 0.00 N ATOM 2703 CA GLY 373 8.083 22.950 55.474 1.00 0.00 C ATOM 2704 C GLY 373 9.256 21.971 55.182 1.00 0.00 C ATOM 2705 O GLY 373 9.315 21.399 54.090 1.00 0.00 O ATOM 2706 N TYR 374 10.234 21.818 56.083 1.00 0.00 N ATOM 2707 CA TYR 374 11.446 20.999 55.938 1.00 0.00 C ATOM 2708 C TYR 374 11.296 19.509 56.344 1.00 0.00 C ATOM 2709 O TYR 374 10.540 19.244 57.276 1.00 0.00 O ATOM 2710 CB TYR 374 12.444 21.662 56.898 1.00 0.00 C ATOM 2711 CG TYR 374 13.883 21.222 56.746 1.00 0.00 C ATOM 2712 CD1 TYR 374 14.608 21.737 55.663 1.00 0.00 C ATOM 2713 CD2 TYR 374 14.545 20.505 57.762 1.00 0.00 C ATOM 2714 CE1 TYR 374 15.989 21.489 55.566 1.00 0.00 C ATOM 2715 CE2 TYR 374 15.927 20.227 57.645 1.00 0.00 C ATOM 2716 CZ TYR 374 16.652 20.732 56.546 1.00 0.00 C ATOM 2717 OH TYR 374 18.012 20.516 56.423 1.00 0.00 H ATOM 2718 N PRO 375 12.059 18.536 55.787 1.00 0.00 N ATOM 2719 CA PRO 375 11.999 17.110 56.152 1.00 0.00 C ATOM 2720 C PRO 375 12.602 16.712 57.487 1.00 0.00 C ATOM 2721 O PRO 375 12.429 15.542 57.827 1.00 0.00 O ATOM 2722 CB PRO 375 12.769 16.360 55.058 1.00 0.00 C ATOM 2723 CG PRO 375 13.840 17.369 54.696 1.00 0.00 C ATOM 2724 CD PRO 375 13.066 18.697 54.744 1.00 0.00 C ATOM 2725 N ILE 376 13.367 17.536 58.224 1.00 0.00 N ATOM 2726 CA ILE 376 13.641 17.002 59.577 1.00 0.00 C ATOM 2727 C ILE 376 12.299 16.938 60.310 1.00 0.00 C ATOM 2728 O ILE 376 11.658 17.988 60.450 1.00 0.00 O ATOM 2729 CB ILE 376 14.688 17.763 60.398 1.00 0.00 C ATOM 2730 CG1 ILE 376 16.059 17.589 59.720 1.00 0.00 C ATOM 2731 CG2 ILE 376 14.782 17.297 61.852 1.00 0.00 C ATOM 2732 CD1 ILE 376 16.571 16.154 59.576 1.00 0.00 C ATOM 2733 N PHE 377 11.948 15.713 60.766 1.00 0.00 N ATOM 2734 CA PHE 377 10.591 15.341 61.132 1.00 0.00 C ATOM 2735 C PHE 377 9.955 16.323 62.128 1.00 0.00 C ATOM 2736 O PHE 377 10.387 16.445 63.277 1.00 0.00 O ATOM 2737 CB PHE 377 10.591 13.926 61.717 1.00 0.00 C ATOM 2738 CG PHE 377 9.201 13.364 61.872 1.00 0.00 C ATOM 2739 CD1 PHE 377 8.528 12.829 60.751 1.00 0.00 C ATOM 2740 CD2 PHE 377 8.599 13.324 63.149 1.00 0.00 C ATOM 2741 CE1 PHE 377 7.248 12.260 60.904 1.00 0.00 C ATOM 2742 CE2 PHE 377 7.317 12.759 63.301 1.00 0.00 C ATOM 2743 CZ PHE 377 6.644 12.227 62.179 1.00 0.00 C ATOM 2744 N GLN 378 8.922 17.014 61.641 1.00 0.00 N ATOM 2745 CA GLN 378 8.159 18.006 62.347 1.00 0.00 C ATOM 2746 C GLN 378 6.847 18.150 61.588 1.00 0.00 C ATOM 2747 O GLN 378 6.775 17.993 60.359 1.00 0.00 O ATOM 2748 CB GLN 378 8.932 19.326 62.410 1.00 0.00 C ATOM 2749 CG GLN 378 10.096 19.291 63.426 1.00 0.00 C ATOM 2750 CD GLN 378 10.704 20.661 63.786 1.00 0.00 C ATOM 2751 OE1 GLN 378 11.698 20.701 64.518 1.00 0.00 O ATOM 2752 NE2 GLN 378 10.143 21.771 63.308 1.00 0.00 N ATOM 2753 N TRP 379 5.805 18.354 62.387 1.00 0.00 N ATOM 2754 CA TRP 379 4.492 18.485 61.808 1.00 0.00 C ATOM 2755 C TRP 379 4.114 19.956 61.578 1.00 0.00 C ATOM 2756 O TRP 379 4.312 20.791 62.461 1.00 0.00 O ATOM 2757 CB TRP 379 3.481 17.749 62.692 1.00 0.00 C ATOM 2758 CG TRP 379 3.487 18.047 64.160 1.00 0.00 C ATOM 2759 CD1 TRP 379 2.740 19.008 64.737 1.00 0.00 C ATOM 2760 CD2 TRP 379 4.239 17.406 65.243 1.00 0.00 C ATOM 2761 NE1 TRP 379 2.970 18.998 66.101 1.00 0.00 N ATOM 2762 CE2 TRP 379 3.897 18.046 66.468 1.00 0.00 C ATOM 2763 CE3 TRP 379 5.193 16.367 65.313 1.00 0.00 C ATOM 2764 CZ2 TRP 379 4.460 17.684 67.703 1.00 0.00 C ATOM 2765 CZ3 TRP 379 5.775 15.992 66.542 1.00 0.00 C ATOM 2766 CH2 TRP 379 5.407 16.642 67.741 1.00 0.00 H ATOM 2767 N SER 380 3.636 20.242 60.355 1.00 0.00 N ATOM 2768 CA SER 380 3.035 21.514 59.965 1.00 0.00 C ATOM 2769 C SER 380 1.712 21.779 60.690 1.00 0.00 C ATOM 2770 O SER 380 1.266 20.937 61.466 1.00 0.00 O ATOM 2771 CB SER 380 2.804 21.475 58.444 1.00 0.00 C ATOM 2772 OG SER 380 4.052 21.235 57.783 1.00 0.00 O ATOM 2773 N GLU 381 1.166 22.986 60.538 1.00 0.00 N ATOM 2774 CA GLU 381 -0.021 23.521 61.201 1.00 0.00 C ATOM 2775 C GLU 381 0.309 23.883 62.654 1.00 0.00 C ATOM 2776 O GLU 381 1.462 24.307 62.899 1.00 0.00 O ATOM 2777 CB GLU 381 -1.203 22.547 61.148 1.00 0.00 C ATOM 2778 CG GLU 381 -1.802 22.495 59.751 1.00 0.00 C ATOM 2779 CD GLU 381 -2.507 23.771 59.280 1.00 0.00 C ATOM 2780 OE1 GLU 381 -2.164 24.881 59.745 1.00 0.00 O ATOM 2781 OE2 GLU 381 -3.311 23.634 58.329 1.00 0.00 O ATOM 2782 OXT GLU 381 -0.569 23.687 63.531 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 90.39 35.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 94.55 27.3 22 100.0 22 ARMSMC SURFACE . . . . . . . . 92.07 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 81.43 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.67 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 88.27 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 76.70 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 89.15 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 64.61 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.54 27.3 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 93.10 31.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 71.07 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 99.79 25.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 54.24 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.99 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 37.04 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 42.17 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 69.99 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.27 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 77.27 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 77.27 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.94 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.94 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2560 CRMSCA SECONDARY STRUCTURE . . 6.50 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.07 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.22 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.05 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.58 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.17 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.32 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.79 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.01 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.99 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.00 120 100.0 120 CRMSSC BURIED . . . . . . . . 7.98 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.45 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.74 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.68 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.51 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.310 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.261 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.361 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.042 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.430 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.340 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.484 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 7.131 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.761 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.972 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.550 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.952 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 7.469 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.531 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 7.326 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.706 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 7.230 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 6 25 31 31 DISTCA CA (P) 0.00 3.23 6.45 19.35 80.65 31 DISTCA CA (RMS) 0.00 1.65 2.09 3.64 6.32 DISTCA ALL (N) 0 3 8 44 176 254 254 DISTALL ALL (P) 0.00 1.18 3.15 17.32 69.29 254 DISTALL ALL (RMS) 0.00 1.48 2.27 3.82 6.56 DISTALL END of the results output