####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS428_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS428_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.93 18.44 LCS_AVERAGE: 49.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 366 - 373 1.86 20.55 LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.84 26.06 LCS_AVERAGE: 19.46 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 366 - 370 0.97 21.18 LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.83 19.61 LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.87 25.92 LCS_AVERAGE: 13.32 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 17 0 3 3 3 7 8 9 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT A 352 A 352 3 4 17 0 3 4 4 4 5 9 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT E 353 E 353 3 4 17 3 3 4 4 4 7 9 10 12 12 14 14 15 15 16 17 17 18 18 18 LCS_GDT E 354 E 354 3 4 17 3 3 4 4 4 5 6 7 9 12 13 13 15 15 16 17 17 18 19 20 LCS_GDT L 355 L 355 3 4 17 3 3 4 4 6 8 9 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT G 356 G 356 3 4 17 4 4 4 6 7 8 9 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT N 357 N 357 3 4 17 3 4 4 6 6 7 8 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT I 358 I 358 3 4 17 3 4 4 6 7 8 9 10 12 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT I 359 I 359 4 5 17 3 4 4 6 6 7 8 10 12 12 14 14 15 15 16 17 17 18 18 20 LCS_GDT V 360 V 360 4 5 17 3 4 4 4 5 5 6 7 8 11 11 13 14 14 15 16 17 18 19 20 LCS_GDT A 361 A 361 4 5 17 3 4 4 4 5 6 6 8 10 12 14 14 15 15 16 17 17 18 19 20 LCS_GDT W 362 W 362 4 5 17 4 4 4 6 7 8 9 10 12 13 14 14 15 15 16 17 17 18 19 20 LCS_GDT N 363 N 363 4 5 17 4 4 4 6 7 8 10 11 12 13 14 14 15 15 16 17 17 18 19 20 LCS_GDT P 364 P 364 4 4 17 3 4 4 6 7 8 9 11 12 13 14 14 15 15 16 17 17 18 19 20 LCS_GDT N 365 N 365 4 6 17 4 4 4 6 7 8 10 11 12 13 14 14 15 15 16 17 17 18 19 20 LCS_GDT L 366 L 366 5 8 17 3 3 6 7 7 8 10 11 12 13 14 14 15 15 16 17 17 18 19 20 LCS_GDT W 367 W 367 5 8 17 3 3 6 7 7 8 10 11 12 13 13 14 14 15 16 17 17 18 19 20 LCS_GDT K 368 K 368 5 8 15 4 4 6 7 7 8 10 11 12 13 13 14 14 14 14 17 17 18 18 19 LCS_GDT K 369 K 369 5 8 15 4 4 6 7 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT G 370 G 370 5 8 15 4 4 6 7 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT T 371 T 371 5 8 15 4 4 6 7 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT N 372 N 372 5 8 15 3 4 6 7 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT G 373 G 373 5 8 15 3 4 5 6 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT Y 374 Y 374 5 8 15 3 4 5 6 7 8 10 11 12 13 13 14 14 14 14 14 16 17 18 19 LCS_GDT P 375 P 375 5 8 15 3 4 5 6 7 8 8 8 8 8 9 9 10 11 14 14 16 17 18 19 LCS_GDT I 376 I 376 5 8 15 3 4 5 6 7 8 8 8 8 8 9 10 11 13 14 14 16 17 18 19 LCS_GDT F 377 F 377 5 8 11 3 4 5 6 7 8 8 8 8 8 9 9 10 11 11 12 16 17 18 19 LCS_GDT Q 378 Q 378 4 8 11 3 4 5 6 7 8 8 8 8 8 9 9 10 11 12 13 16 17 19 20 LCS_GDT W 379 W 379 4 8 11 3 4 5 6 7 8 8 8 8 8 9 10 11 11 13 15 16 17 19 20 LCS_GDT S 380 S 380 4 4 11 3 4 4 4 4 4 5 6 7 8 9 9 10 11 12 13 16 17 19 20 LCS_GDT E 381 E 381 4 4 11 0 4 4 4 4 4 5 6 7 8 8 9 10 11 12 15 16 16 19 20 LCS_AVERAGE LCS_A: 27.54 ( 13.32 19.46 49.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 6 7 7 8 10 11 12 13 14 14 15 15 16 17 17 18 19 20 GDT PERCENT_AT 12.90 12.90 19.35 22.58 22.58 25.81 32.26 35.48 38.71 41.94 45.16 45.16 48.39 48.39 51.61 54.84 54.84 58.06 61.29 64.52 GDT RMS_LOCAL 0.29 0.29 1.14 1.39 1.39 1.84 2.40 2.60 2.92 3.21 3.73 3.73 4.05 4.05 4.58 5.09 4.93 5.38 7.18 7.22 GDT RMS_ALL_AT 20.33 20.33 20.99 20.84 20.84 26.06 20.01 20.18 19.89 19.48 19.74 19.74 19.84 19.84 18.78 18.24 18.44 17.98 14.55 14.68 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 41.048 0 0.351 0.406 43.637 0.000 0.000 LGA A 352 A 352 38.822 0 0.551 0.547 39.476 0.000 0.000 LGA E 353 E 353 37.727 0 0.564 0.814 41.992 0.000 0.000 LGA E 354 E 354 33.682 0 0.087 1.199 36.706 0.000 0.000 LGA L 355 L 355 28.706 0 0.073 0.239 32.169 0.000 0.000 LGA G 356 G 356 24.582 0 0.420 0.420 26.633 0.000 0.000 LGA N 357 N 357 25.336 0 0.567 1.021 32.041 0.000 0.000 LGA I 358 I 358 20.723 0 0.426 1.523 25.545 0.000 0.000 LGA I 359 I 359 17.316 0 0.573 1.583 20.214 0.000 0.000 LGA V 360 V 360 15.910 0 0.603 0.821 19.069 0.000 0.000 LGA A 361 A 361 11.025 0 0.208 0.225 12.876 2.500 2.000 LGA W 362 W 362 7.257 0 0.634 0.410 16.647 21.905 6.599 LGA N 363 N 363 3.011 0 0.097 1.094 6.083 39.048 33.333 LGA P 364 P 364 5.792 0 0.044 0.218 8.967 33.333 22.041 LGA N 365 N 365 3.037 0 0.308 0.315 6.638 55.476 41.369 LGA L 366 L 366 1.542 0 0.341 1.344 7.065 77.262 57.917 LGA W 367 W 367 2.400 0 0.187 0.888 8.236 62.857 31.905 LGA K 368 K 368 3.405 0 0.683 0.950 5.527 42.976 41.429 LGA K 369 K 369 3.143 0 0.327 1.777 10.475 61.190 36.296 LGA G 370 G 370 1.285 0 0.193 0.193 2.031 75.119 75.119 LGA T 371 T 371 1.317 0 0.067 0.111 1.729 77.143 78.980 LGA N 372 N 372 1.786 0 0.595 1.434 3.220 75.238 68.214 LGA G 373 G 373 2.565 0 0.651 0.651 4.886 50.833 50.833 LGA Y 374 Y 374 3.657 0 0.043 1.271 9.082 29.405 32.738 LGA P 375 P 375 10.169 0 0.120 0.328 11.663 1.905 1.769 LGA I 376 I 376 12.923 0 0.207 0.771 16.086 0.000 0.000 LGA F 377 F 377 19.272 0 0.642 0.976 22.153 0.000 0.000 LGA Q 378 Q 378 22.303 0 0.374 0.450 26.473 0.000 0.000 LGA W 379 W 379 26.799 0 0.416 1.178 28.478 0.000 0.000 LGA S 380 S 380 26.363 0 0.269 0.820 30.421 0.000 0.000 LGA E 381 E 381 31.436 0 0.599 1.351 34.689 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 11.664 11.686 12.236 22.780 18.727 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.60 31.452 29.115 0.407 LGA_LOCAL RMSD: 2.601 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 20.181 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.664 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.595232 * X + 0.515163 * Y + 0.616689 * Z + -13.298796 Y_new = 0.391531 * X + -0.484250 * Y + 0.782436 * Z + -9.732954 Z_new = 0.701714 * X + 0.707184 * Y + 0.086540 * Z + -54.734821 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.559769 -0.777800 1.449030 [DEG: 146.6640 -44.5647 83.0233 ] ZXZ: 2.474109 1.484148 0.781516 [DEG: 141.7560 85.0354 44.7775 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS428_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS428_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.60 29.115 11.66 REMARK ---------------------------------------------------------- MOLECULE T0537TS428_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyh_B 2qy1_A 1bhe_A 1ru4_A 2odl_A ATOM 2944 N SER 351 43.964 19.108 45.490 1.00 0.00 N ATOM 2945 CA SER 351 45.019 19.314 46.455 1.00 0.00 C ATOM 2946 CB SER 351 46.395 18.930 45.882 1.00 0.00 C ATOM 2947 OG SER 351 46.686 19.722 44.739 1.00 0.00 O ATOM 2948 C SER 351 45.150 20.679 47.091 1.00 0.00 C ATOM 2949 O SER 351 45.947 21.508 46.652 1.00 0.00 O ATOM 2950 N ALA 352 44.338 20.969 48.129 1.00 0.00 N ATOM 2951 CA ALA 352 44.609 22.101 48.976 1.00 0.00 C ATOM 2952 CB ALA 352 44.353 23.517 48.411 1.00 0.00 C ATOM 2953 C ALA 352 43.943 21.813 50.289 1.00 0.00 C ATOM 2954 O ALA 352 43.703 20.648 50.600 1.00 0.00 O ATOM 2955 N GLU 353 43.674 22.831 51.129 1.00 0.00 N ATOM 2956 CA GLU 353 43.223 22.559 52.473 1.00 0.00 C ATOM 2957 CB GLU 353 43.287 23.788 53.395 1.00 0.00 C ATOM 2958 CG GLU 353 42.355 24.921 52.966 1.00 0.00 C ATOM 2959 CD GLU 353 42.594 26.100 53.894 1.00 0.00 C ATOM 2960 OE1 GLU 353 42.712 25.885 55.131 1.00 0.00 O ATOM 2961 OE2 GLU 353 42.660 27.241 53.365 1.00 0.00 O ATOM 2962 C GLU 353 41.822 22.007 52.569 1.00 0.00 C ATOM 2963 O GLU 353 40.945 22.274 51.748 1.00 0.00 O ATOM 2964 N GLU 354 41.652 21.134 53.593 1.00 0.00 N ATOM 2965 CA GLU 354 40.461 20.546 54.180 1.00 0.00 C ATOM 2966 CB GLU 354 39.417 21.604 54.557 1.00 0.00 C ATOM 2967 CG GLU 354 39.764 22.401 55.811 1.00 0.00 C ATOM 2968 CD GLU 354 39.042 21.746 56.978 1.00 0.00 C ATOM 2969 OE1 GLU 354 39.487 20.654 57.418 1.00 0.00 O ATOM 2970 OE2 GLU 354 38.024 22.329 57.440 1.00 0.00 O ATOM 2971 C GLU 354 39.754 19.555 53.300 1.00 0.00 C ATOM 2972 O GLU 354 39.615 18.390 53.667 1.00 0.00 O ATOM 2973 N LEU 355 39.257 20.003 52.133 1.00 0.00 N ATOM 2974 CA LEU 355 38.707 19.185 51.081 1.00 0.00 C ATOM 2975 CB LEU 355 39.692 18.082 50.674 1.00 0.00 C ATOM 2976 CG LEU 355 40.995 18.689 50.132 1.00 0.00 C ATOM 2977 CD1 LEU 355 41.971 17.622 49.615 1.00 0.00 C ATOM 2978 CD2 LEU 355 40.677 19.761 49.084 1.00 0.00 C ATOM 2979 C LEU 355 37.374 18.544 51.375 1.00 0.00 C ATOM 2980 O LEU 355 36.426 18.723 50.607 1.00 0.00 O ATOM 2981 N GLY 356 37.247 17.804 52.500 1.00 0.00 N ATOM 2982 CA GLY 356 35.999 17.147 52.829 1.00 0.00 C ATOM 2983 C GLY 356 35.572 16.322 51.648 1.00 0.00 C ATOM 2984 O GLY 356 34.397 16.304 51.279 1.00 0.00 O ATOM 2985 N ASN 357 36.524 15.556 51.081 1.00 0.00 N ATOM 2986 CA ASN 357 36.425 14.847 49.837 1.00 0.00 C ATOM 2987 CB ASN 357 37.514 13.768 49.708 1.00 0.00 C ATOM 2988 CG ASN 357 38.867 14.464 49.813 1.00 0.00 C ATOM 2989 OD1 ASN 357 39.407 14.667 50.900 1.00 0.00 O ATOM 2990 ND2 ASN 357 39.432 14.851 48.640 1.00 0.00 N ATOM 2991 C ASN 357 35.089 14.207 49.616 1.00 0.00 C ATOM 2992 O ASN 357 34.446 13.687 50.523 1.00 0.00 O ATOM 2993 N ILE 358 34.742 14.175 48.314 1.00 0.00 N ATOM 2994 CA ILE 358 33.534 13.839 47.607 1.00 0.00 C ATOM 2995 CB ILE 358 33.836 14.022 46.142 1.00 0.00 C ATOM 2996 CG2 ILE 358 34.554 15.379 46.018 1.00 0.00 C ATOM 2997 CG1 ILE 358 34.810 12.941 45.617 1.00 0.00 C ATOM 2998 CD1 ILE 358 36.216 12.995 46.217 1.00 0.00 C ATOM 2999 C ILE 358 33.117 12.401 47.779 1.00 0.00 C ATOM 3000 O ILE 358 32.670 11.761 46.829 1.00 0.00 O ATOM 3001 N ILE 359 33.085 11.862 49.007 1.00 0.00 N ATOM 3002 CA ILE 359 32.745 10.467 49.054 1.00 0.00 C ATOM 3003 CB ILE 359 33.389 9.675 50.151 1.00 0.00 C ATOM 3004 CG2 ILE 359 34.912 9.762 49.981 1.00 0.00 C ATOM 3005 CG1 ILE 359 32.901 10.136 51.524 1.00 0.00 C ATOM 3006 CD1 ILE 359 33.240 9.119 52.608 1.00 0.00 C ATOM 3007 C ILE 359 31.268 10.292 49.180 1.00 0.00 C ATOM 3008 O ILE 359 30.569 11.017 49.888 1.00 0.00 O ATOM 3009 N VAL 360 30.782 9.268 48.464 1.00 0.00 N ATOM 3010 CA VAL 360 29.406 8.917 48.326 1.00 0.00 C ATOM 3011 CB VAL 360 29.245 7.796 47.343 1.00 0.00 C ATOM 3012 CG1 VAL 360 29.778 6.505 47.981 1.00 0.00 C ATOM 3013 CG2 VAL 360 27.783 7.730 46.897 1.00 0.00 C ATOM 3014 C VAL 360 28.822 8.485 49.637 1.00 0.00 C ATOM 3015 O VAL 360 29.512 8.008 50.535 1.00 0.00 O ATOM 3016 N ALA 361 27.496 8.684 49.765 1.00 0.00 N ATOM 3017 CA ALA 361 26.731 8.279 50.908 1.00 0.00 C ATOM 3018 CB ALA 361 26.859 6.775 51.208 1.00 0.00 C ATOM 3019 C ALA 361 27.123 9.028 52.140 1.00 0.00 C ATOM 3020 O ALA 361 26.846 8.567 53.246 1.00 0.00 O ATOM 3021 N TRP 362 27.761 10.207 52.016 1.00 0.00 N ATOM 3022 CA TRP 362 27.965 10.926 53.242 1.00 0.00 C ATOM 3023 CB TRP 362 28.845 12.191 53.161 1.00 0.00 C ATOM 3024 CG TRP 362 30.296 11.963 53.495 1.00 0.00 C ATOM 3025 CD2 TRP 362 31.325 12.957 53.403 1.00 0.00 C ATOM 3026 CD1 TRP 362 30.883 10.845 54.012 1.00 0.00 C ATOM 3027 NE1 TRP 362 32.209 11.090 54.268 1.00 0.00 N ATOM 3028 CE2 TRP 362 32.500 12.385 53.893 1.00 0.00 C ATOM 3029 CE3 TRP 362 31.298 14.251 52.960 1.00 0.00 C ATOM 3030 CZ2 TRP 362 33.664 13.095 53.949 1.00 0.00 C ATOM 3031 CZ3 TRP 362 32.477 14.957 53.008 1.00 0.00 C ATOM 3032 CH2 TRP 362 33.642 14.394 53.492 1.00 0.00 H ATOM 3033 C TRP 362 26.645 11.341 53.795 1.00 0.00 C ATOM 3034 O TRP 362 25.765 11.797 53.063 1.00 0.00 O ATOM 3035 N ASN 363 26.468 11.106 55.113 1.00 0.00 N ATOM 3036 CA ASN 363 25.311 11.566 55.826 1.00 0.00 C ATOM 3037 CB ASN 363 24.382 10.423 56.277 1.00 0.00 C ATOM 3038 CG ASN 363 23.580 9.922 55.079 1.00 0.00 C ATOM 3039 OD1 ASN 363 22.386 9.654 55.204 1.00 0.00 O ATOM 3040 ND2 ASN 363 24.231 9.786 53.892 1.00 0.00 N ATOM 3041 C ASN 363 25.777 12.299 57.060 1.00 0.00 C ATOM 3042 O ASN 363 25.673 11.774 58.168 1.00 0.00 O ATOM 3043 N PRO 364 26.278 13.506 56.928 1.00 0.00 N ATOM 3044 CA PRO 364 26.670 14.236 58.104 1.00 0.00 C ATOM 3045 CD PRO 364 27.180 13.814 55.828 1.00 0.00 C ATOM 3046 CB PRO 364 27.621 15.346 57.649 1.00 0.00 C ATOM 3047 CG PRO 364 27.644 15.248 56.117 1.00 0.00 C ATOM 3048 C PRO 364 25.501 14.667 58.944 1.00 0.00 C ATOM 3049 O PRO 364 25.724 15.136 60.059 1.00 0.00 O ATOM 3050 N ASN 365 24.265 14.570 58.416 1.00 0.00 N ATOM 3051 CA ASN 365 23.061 14.786 59.188 1.00 0.00 C ATOM 3052 CB ASN 365 22.821 13.672 60.228 1.00 0.00 C ATOM 3053 CG ASN 365 22.492 12.370 59.499 1.00 0.00 C ATOM 3054 OD1 ASN 365 22.039 12.371 58.356 1.00 0.00 O ATOM 3055 ND2 ASN 365 22.720 11.220 60.190 1.00 0.00 N ATOM 3056 C ASN 365 23.048 16.117 59.902 1.00 0.00 C ATOM 3057 O ASN 365 22.688 16.200 61.076 1.00 0.00 O ATOM 3058 N LEU 366 23.400 17.197 59.184 1.00 0.00 N ATOM 3059 CA LEU 366 23.514 18.558 59.654 1.00 0.00 C ATOM 3060 CB LEU 366 24.424 19.429 58.768 1.00 0.00 C ATOM 3061 CG LEU 366 25.243 20.486 59.554 1.00 0.00 C ATOM 3062 CD1 LEU 366 25.873 21.513 58.607 1.00 0.00 C ATOM 3063 CD2 LEU 366 24.509 21.103 60.753 1.00 0.00 C ATOM 3064 C LEU 366 22.144 19.212 59.779 1.00 0.00 C ATOM 3065 O LEU 366 22.041 20.437 59.818 1.00 0.00 O ATOM 3066 N TRP 367 21.055 18.431 59.650 1.00 0.00 N ATOM 3067 CA TRP 367 19.687 18.906 59.603 1.00 0.00 C ATOM 3068 CB TRP 367 18.706 17.721 59.700 1.00 0.00 C ATOM 3069 CG TRP 367 17.391 17.805 58.948 1.00 0.00 C ATOM 3070 CD2 TRP 367 16.921 18.909 58.153 1.00 0.00 C ATOM 3071 CD1 TRP 367 16.484 16.801 58.777 1.00 0.00 C ATOM 3072 NE1 TRP 367 15.477 17.208 57.938 1.00 0.00 N ATOM 3073 CE2 TRP 367 15.735 18.501 57.540 1.00 0.00 C ATOM 3074 CE3 TRP 367 17.441 20.154 57.932 1.00 0.00 C ATOM 3075 CZ2 TRP 367 15.052 19.328 56.695 1.00 0.00 C ATOM 3076 CZ3 TRP 367 16.736 20.992 57.094 1.00 0.00 C ATOM 3077 CH2 TRP 367 15.566 20.588 56.485 1.00 0.00 H ATOM 3078 C TRP 367 19.400 19.853 60.753 1.00 0.00 C ATOM 3079 O TRP 367 19.256 19.460 61.911 1.00 0.00 O ATOM 3080 N LYS 368 19.271 21.149 60.406 1.00 0.00 N ATOM 3081 CA LYS 368 18.967 22.299 61.225 1.00 0.00 C ATOM 3082 CB LYS 368 19.389 23.642 60.599 1.00 0.00 C ATOM 3083 CG LYS 368 20.910 23.816 60.611 1.00 0.00 C ATOM 3084 CD LYS 368 21.416 25.039 59.847 1.00 0.00 C ATOM 3085 CE LYS 368 22.922 25.249 60.016 1.00 0.00 C ATOM 3086 NZ LYS 368 23.277 26.651 59.703 1.00 0.00 N ATOM 3087 C LYS 368 17.514 22.353 61.604 1.00 0.00 C ATOM 3088 O LYS 368 17.105 23.294 62.283 1.00 0.00 O ATOM 3089 N LYS 369 16.688 21.385 61.155 1.00 0.00 N ATOM 3090 CA LYS 369 15.269 21.469 61.401 1.00 0.00 C ATOM 3091 CB LYS 369 14.911 21.657 62.895 1.00 0.00 C ATOM 3092 CG LYS 369 13.429 21.451 63.258 1.00 0.00 C ATOM 3093 CD LYS 369 12.440 22.487 62.715 1.00 0.00 C ATOM 3094 CE LYS 369 12.220 23.680 63.652 1.00 0.00 C ATOM 3095 NZ LYS 369 13.321 24.659 63.505 1.00 0.00 N ATOM 3096 C LYS 369 14.728 22.621 60.618 1.00 0.00 C ATOM 3097 O LYS 369 14.358 23.659 61.163 1.00 0.00 O ATOM 3098 N GLY 370 14.768 22.471 59.276 1.00 0.00 N ATOM 3099 CA GLY 370 14.237 23.466 58.382 1.00 0.00 C ATOM 3100 C GLY 370 12.748 23.322 58.300 1.00 0.00 C ATOM 3101 O GLY 370 12.219 22.343 57.775 1.00 0.00 O ATOM 3102 N THR 371 12.058 24.391 58.726 1.00 0.00 N ATOM 3103 CA THR 371 10.637 24.537 58.858 1.00 0.00 C ATOM 3104 CB THR 371 10.259 25.809 59.569 1.00 0.00 C ATOM 3105 OG1 THR 371 10.647 26.945 58.807 1.00 0.00 O ATOM 3106 CG2 THR 371 10.968 25.832 60.933 1.00 0.00 C ATOM 3107 C THR 371 9.928 24.530 57.536 1.00 0.00 C ATOM 3108 O THR 371 8.732 24.267 57.499 1.00 0.00 O ATOM 3109 N ASN 372 10.605 24.853 56.421 1.00 0.00 N ATOM 3110 CA ASN 372 9.949 25.013 55.147 1.00 0.00 C ATOM 3111 CB ASN 372 10.950 25.192 53.995 1.00 0.00 C ATOM 3112 CG ASN 372 11.756 26.451 54.255 1.00 0.00 C ATOM 3113 OD1 ASN 372 11.619 27.445 53.546 1.00 0.00 O ATOM 3114 ND2 ASN 372 12.612 26.414 55.312 1.00 0.00 N ATOM 3115 C ASN 372 9.129 23.820 54.774 1.00 0.00 C ATOM 3116 O ASN 372 9.504 22.671 55.004 1.00 0.00 O ATOM 3117 N GLY 373 7.932 24.080 54.212 1.00 0.00 N ATOM 3118 CA GLY 373 7.175 22.990 53.672 1.00 0.00 C ATOM 3119 C GLY 373 7.860 22.668 52.380 1.00 0.00 C ATOM 3120 O GLY 373 7.851 23.485 51.461 1.00 0.00 O ATOM 3121 N TYR 374 8.449 21.463 52.247 1.00 0.00 N ATOM 3122 CA TYR 374 9.106 21.197 51.004 1.00 0.00 C ATOM 3123 CB TYR 374 10.451 20.451 51.103 1.00 0.00 C ATOM 3124 CG TYR 374 11.432 21.065 52.039 1.00 0.00 C ATOM 3125 CD1 TYR 374 12.058 22.263 51.782 1.00 0.00 C ATOM 3126 CD2 TYR 374 11.771 20.383 53.181 1.00 0.00 C ATOM 3127 CE1 TYR 374 12.972 22.773 52.677 1.00 0.00 C ATOM 3128 CE2 TYR 374 12.681 20.884 54.075 1.00 0.00 C ATOM 3129 CZ TYR 374 13.283 22.088 53.823 1.00 0.00 C ATOM 3130 OH TYR 374 14.221 22.612 54.737 1.00 0.00 H ATOM 3131 C TYR 374 8.289 20.171 50.301 1.00 0.00 C ATOM 3132 O TYR 374 8.201 19.035 50.775 1.00 0.00 O ATOM 3133 N PRO 375 7.658 20.483 49.213 1.00 0.00 N ATOM 3134 CA PRO 375 7.069 19.405 48.488 1.00 0.00 C ATOM 3135 CD PRO 375 6.914 21.717 49.055 1.00 0.00 C ATOM 3136 CB PRO 375 6.013 20.021 47.566 1.00 0.00 C ATOM 3137 CG PRO 375 6.245 21.542 47.679 1.00 0.00 C ATOM 3138 C PRO 375 8.205 18.710 47.814 1.00 0.00 C ATOM 3139 O PRO 375 8.866 19.336 46.984 1.00 0.00 O ATOM 3140 N ILE 376 8.437 17.423 48.131 1.00 0.00 N ATOM 3141 CA ILE 376 9.486 16.688 47.483 1.00 0.00 C ATOM 3142 CB ILE 376 10.251 15.737 48.365 1.00 0.00 C ATOM 3143 CG2 ILE 376 10.927 16.550 49.478 1.00 0.00 C ATOM 3144 CG1 ILE 376 9.357 14.609 48.903 1.00 0.00 C ATOM 3145 CD1 ILE 376 8.229 15.089 49.812 1.00 0.00 C ATOM 3146 C ILE 376 8.823 15.862 46.426 1.00 0.00 C ATOM 3147 O ILE 376 7.845 15.161 46.684 1.00 0.00 O ATOM 3148 N PHE 377 9.308 15.998 45.181 1.00 0.00 N ATOM 3149 CA PHE 377 8.790 15.304 44.035 1.00 0.00 C ATOM 3150 CB PHE 377 9.122 16.012 42.716 1.00 0.00 C ATOM 3151 CG PHE 377 8.159 17.148 42.692 1.00 0.00 C ATOM 3152 CD1 PHE 377 8.414 18.306 43.393 1.00 0.00 C ATOM 3153 CD2 PHE 377 6.987 17.036 41.981 1.00 0.00 C ATOM 3154 CE1 PHE 377 7.512 19.342 43.373 1.00 0.00 C ATOM 3155 CE2 PHE 377 6.082 18.070 41.958 1.00 0.00 C ATOM 3156 CZ PHE 377 6.347 19.225 42.655 1.00 0.00 C ATOM 3157 C PHE 377 9.170 13.849 43.978 1.00 0.00 C ATOM 3158 O PHE 377 8.388 13.022 43.511 1.00 0.00 O ATOM 3159 N GLN 378 10.392 13.493 44.415 1.00 0.00 N ATOM 3160 CA GLN 378 10.857 12.128 44.396 1.00 0.00 C ATOM 3161 CB GLN 378 10.208 11.225 45.457 1.00 0.00 C ATOM 3162 CG GLN 378 10.616 11.610 46.883 1.00 0.00 C ATOM 3163 CD GLN 378 10.235 10.458 47.800 1.00 0.00 C ATOM 3164 OE1 GLN 378 9.788 9.412 47.331 1.00 0.00 O ATOM 3165 NE2 GLN 378 10.428 10.646 49.132 1.00 0.00 N ATOM 3166 C GLN 378 10.677 11.555 43.028 1.00 0.00 C ATOM 3167 O GLN 378 10.183 10.442 42.858 1.00 0.00 O ATOM 3168 N TRP 379 11.143 12.313 42.018 1.00 0.00 N ATOM 3169 CA TRP 379 10.997 11.980 40.632 1.00 0.00 C ATOM 3170 CB TRP 379 11.074 13.269 39.775 1.00 0.00 C ATOM 3171 CG TRP 379 11.116 13.124 38.268 1.00 0.00 C ATOM 3172 CD2 TRP 379 11.967 13.894 37.396 1.00 0.00 C ATOM 3173 CD1 TRP 379 10.327 12.366 37.458 1.00 0.00 C ATOM 3174 NE1 TRP 379 10.640 12.602 36.139 1.00 0.00 N ATOM 3175 CE2 TRP 379 11.640 13.546 36.084 1.00 0.00 C ATOM 3176 CE3 TRP 379 12.930 14.829 37.657 1.00 0.00 C ATOM 3177 CZ2 TRP 379 12.267 14.125 35.016 1.00 0.00 C ATOM 3178 CZ3 TRP 379 13.571 15.400 36.575 1.00 0.00 C ATOM 3179 CH2 TRP 379 13.244 15.058 35.279 1.00 0.00 H ATOM 3180 C TRP 379 12.090 11.054 40.215 1.00 0.00 C ATOM 3181 O TRP 379 13.102 11.476 39.659 1.00 0.00 O ATOM 3182 N SER 380 11.899 9.741 40.440 1.00 0.00 N ATOM 3183 CA SER 380 12.890 8.826 39.968 1.00 0.00 C ATOM 3184 CB SER 380 13.121 7.635 40.916 1.00 0.00 C ATOM 3185 OG SER 380 14.129 6.775 40.404 1.00 0.00 O ATOM 3186 C SER 380 12.344 8.311 38.689 1.00 0.00 C ATOM 3187 O SER 380 11.796 7.212 38.622 1.00 0.00 O ATOM 3188 N GLU 381 12.511 9.107 37.617 1.00 0.00 N ATOM 3189 CA GLU 381 11.949 8.706 36.369 1.00 0.00 C ATOM 3190 CB GLU 381 11.708 9.861 35.389 1.00 0.00 C ATOM 3191 CG GLU 381 11.087 9.351 34.091 1.00 0.00 C ATOM 3192 CD GLU 381 10.224 10.458 33.513 1.00 0.00 C ATOM 3193 OE1 GLU 381 10.704 11.620 33.448 1.00 0.00 O ATOM 3194 OE2 GLU 381 9.056 10.154 33.149 1.00 0.00 O ATOM 3195 C GLU 381 12.856 7.681 35.707 1.00 0.00 C ATOM 3196 O GLU 381 12.314 6.645 35.231 1.00 0.00 O ATOM 3197 OXT GLU 381 14.095 7.908 35.665 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.11 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 106.83 36.4 22 100.0 22 ARMSMC SURFACE . . . . . . . . 88.80 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 90.65 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.75 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 76.78 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 88.63 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 74.70 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 98.00 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.98 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 76.18 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 73.56 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 85.94 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 43.37 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.51 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 51.46 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 60.41 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 48.51 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.42 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 72.42 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 72.42 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.66 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.66 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3763 CRMSCA SECONDARY STRUCTURE . . 9.20 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.88 26 100.0 26 CRMSCA BURIED . . . . . . . . 10.44 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.80 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.00 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.03 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.45 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.01 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.25 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.74 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.00 120 100.0 120 CRMSSC BURIED . . . . . . . . 13.07 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.38 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.24 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.54 224 100.0 224 CRMSALL BURIED . . . . . . . . 11.15 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.983 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.342 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 11.157 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.077 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.081 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 8.176 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 11.289 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 9.917 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.050 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 12.282 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 9.099 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 12.010 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 12.522 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.532 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 8.488 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 11.662 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 10.560 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 12 31 31 DISTCA CA (P) 0.00 0.00 3.23 6.45 38.71 31 DISTCA CA (RMS) 0.00 0.00 2.08 2.78 7.31 DISTCA ALL (N) 0 2 4 20 104 254 254 DISTALL ALL (P) 0.00 0.79 1.57 7.87 40.94 254 DISTALL ALL (RMS) 0.00 1.46 1.79 3.88 7.45 DISTALL END of the results output