####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS409_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS409_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 353 - 374 5.00 10.71 LCS_AVERAGE: 65.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 365 - 371 1.92 13.80 LCS_AVERAGE: 16.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 369 - 373 0.75 14.99 LCS_AVERAGE: 11.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 12 0 3 3 3 3 3 4 6 7 7 9 11 13 15 18 20 23 24 25 26 LCS_GDT A 352 A 352 3 3 13 2 3 4 6 7 7 10 11 13 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT E 353 E 353 3 3 22 3 3 4 6 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT E 354 E 354 3 4 22 3 3 4 6 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT L 355 L 355 3 4 22 3 3 4 4 6 8 8 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT G 356 G 356 3 4 22 3 3 4 4 4 5 6 8 9 12 14 17 19 22 23 23 24 24 25 26 LCS_GDT N 357 N 357 3 4 22 3 3 4 4 4 5 6 10 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT I 358 I 358 3 3 22 3 3 3 4 4 5 8 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT I 359 I 359 3 5 22 3 3 4 5 5 6 7 8 12 13 15 18 20 22 23 23 24 24 25 26 LCS_GDT V 360 V 360 3 5 22 3 3 4 5 5 6 7 8 8 11 12 16 19 22 23 23 24 24 25 26 LCS_GDT A 361 A 361 3 5 22 3 3 4 5 5 6 7 8 8 11 12 16 19 22 23 23 24 24 25 26 LCS_GDT W 362 W 362 3 5 22 3 3 4 5 5 6 8 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT N 363 N 363 3 5 22 1 3 3 5 5 7 9 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT P 364 P 364 4 4 22 3 3 4 5 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT N 365 N 365 4 7 22 3 3 4 4 7 7 8 11 12 13 17 18 20 22 23 23 24 24 25 26 LCS_GDT L 366 L 366 4 7 22 4 4 5 5 7 7 9 11 12 13 17 18 20 22 23 23 24 24 25 26 LCS_GDT W 367 W 367 4 7 22 4 4 5 5 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT K 368 K 368 4 7 22 4 4 5 5 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT K 369 K 369 5 7 22 4 5 5 5 7 7 9 11 13 13 16 18 20 21 23 23 24 24 25 26 LCS_GDT G 370 G 370 5 7 22 3 5 5 5 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT T 371 T 371 5 7 22 3 5 5 5 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT N 372 N 372 5 6 22 3 5 5 6 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT G 373 G 373 5 6 22 3 5 5 6 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT Y 374 Y 374 3 6 22 3 3 3 6 7 7 9 11 12 15 17 18 20 22 23 23 24 24 25 26 LCS_GDT P 375 P 375 3 6 18 1 3 4 4 7 7 8 11 12 13 15 17 18 19 21 22 24 24 25 26 LCS_GDT I 376 I 376 3 6 18 3 3 3 4 6 6 6 11 12 13 15 17 17 19 19 19 24 24 25 26 LCS_GDT F 377 F 377 3 6 18 3 3 4 4 6 6 6 9 11 13 15 17 18 19 19 19 20 21 25 26 LCS_GDT Q 378 Q 378 3 6 18 3 3 4 4 6 6 6 7 8 10 14 17 18 19 19 19 20 21 24 25 LCS_GDT W 379 W 379 3 6 18 0 3 4 4 6 6 6 7 10 13 15 17 18 19 19 19 20 21 24 25 LCS_GDT S 380 S 380 3 4 18 0 3 3 3 3 4 4 5 8 9 10 10 18 19 19 19 20 21 24 25 LCS_GDT E 381 E 381 3 4 12 0 3 3 3 4 5 6 7 7 8 10 10 11 15 16 17 19 21 24 25 LCS_AVERAGE LCS_A: 31.18 ( 11.24 16.86 65.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 9 10 11 14 15 17 18 20 22 23 23 24 24 25 26 GDT PERCENT_AT 12.90 16.13 16.13 19.35 22.58 29.03 32.26 35.48 45.16 48.39 54.84 58.06 64.52 70.97 74.19 74.19 77.42 77.42 80.65 83.87 GDT RMS_LOCAL 0.33 0.75 0.75 1.67 1.92 2.20 2.41 2.69 3.48 3.63 4.02 4.16 4.45 4.97 5.07 5.07 5.32 5.32 5.68 6.05 GDT RMS_ALL_AT 14.67 14.99 14.99 11.54 13.80 11.56 11.66 11.51 11.06 11.13 10.86 10.74 10.86 10.61 10.74 10.74 10.62 10.62 10.67 10.49 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 9.385 0 0.531 0.704 11.611 7.976 5.635 LGA A 352 A 352 3.369 0 0.625 0.606 5.783 48.333 44.952 LGA E 353 E 353 1.575 0 0.598 0.604 5.966 69.048 50.265 LGA E 354 E 354 2.192 0 0.615 0.772 10.655 52.738 28.571 LGA L 355 L 355 7.049 0 0.625 1.428 10.576 14.762 8.690 LGA G 356 G 356 10.238 0 0.424 0.424 10.622 1.071 1.071 LGA N 357 N 357 5.668 0 0.603 0.622 6.686 19.405 28.512 LGA I 358 I 358 7.624 0 0.595 0.913 11.960 8.690 4.643 LGA I 359 I 359 9.146 0 0.583 1.630 12.127 1.190 0.952 LGA V 360 V 360 10.572 0 0.614 0.847 14.764 1.190 0.680 LGA A 361 A 361 8.470 0 0.200 0.219 9.230 9.167 7.619 LGA W 362 W 362 5.064 0 0.640 0.785 9.510 26.548 22.415 LGA N 363 N 363 4.264 0 0.563 1.276 5.831 34.524 31.786 LGA P 364 P 364 2.375 0 0.693 0.702 5.807 46.667 44.490 LGA N 365 N 365 7.117 0 0.215 1.069 9.866 13.690 9.286 LGA L 366 L 366 7.453 0 0.582 1.145 12.099 16.548 8.452 LGA W 367 W 367 2.304 0 0.119 1.135 9.859 49.167 28.537 LGA K 368 K 368 3.208 0 0.190 1.451 11.530 61.071 33.175 LGA K 369 K 369 4.746 0 0.618 1.351 14.669 38.810 18.360 LGA G 370 G 370 2.674 0 0.089 0.089 2.751 67.143 67.143 LGA T 371 T 371 1.275 0 0.684 0.946 3.049 75.357 74.898 LGA N 372 N 372 3.338 0 0.089 0.997 8.204 53.810 35.952 LGA G 373 G 373 1.237 0 0.272 0.272 3.646 61.905 61.905 LGA Y 374 Y 374 6.638 0 0.604 1.503 18.263 14.881 5.198 LGA P 375 P 375 9.825 0 0.661 0.640 13.487 1.310 1.156 LGA I 376 I 376 13.379 0 0.357 1.395 15.064 0.000 0.000 LGA F 377 F 377 16.230 0 0.076 1.339 18.675 0.000 0.000 LGA Q 378 Q 378 19.774 0 0.666 0.949 23.822 0.000 0.000 LGA W 379 W 379 24.696 0 0.691 1.418 27.699 0.000 0.000 LGA S 380 S 380 28.345 0 0.576 0.755 28.725 0.000 0.000 LGA E 381 E 381 29.745 0 0.592 1.475 35.543 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.845 8.615 9.637 25.645 20.140 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.69 36.290 32.355 0.394 LGA_LOCAL RMSD: 2.688 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.509 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.845 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.584363 * X + 0.166903 * Y + -0.794143 * Z + 58.373070 Y_new = 0.016594 * X + -0.975958 * Y + -0.217325 * Z + 31.050993 Z_new = -0.811323 * X + -0.140175 * Y + 0.567544 * Z + 116.634392 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.113203 0.946411 -0.242140 [DEG: 178.3734 54.2254 -13.8736 ] ZXZ: -1.303676 0.967277 -1.741881 [DEG: -74.6951 55.4209 -99.8024 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS409_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS409_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.69 32.355 8.85 REMARK ---------------------------------------------------------- MOLECULE T0537TS409_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyhB ATOM 2529 N SER 351 7.900 22.943 52.787 1.00208.44 N ATOM 2530 CA SER 351 6.755 22.075 52.791 1.00208.44 C ATOM 2531 CB SER 351 5.638 22.563 51.846 1.00208.44 C ATOM 2532 OG SER 351 4.484 21.743 51.966 1.00208.44 O ATOM 2533 C SER 351 7.102 20.660 52.445 1.00208.44 C ATOM 2534 O SER 351 6.360 19.992 51.726 1.00208.44 O ATOM 2535 N ALA 352 8.244 20.148 52.935 1.00 68.71 N ATOM 2536 CA ALA 352 8.539 18.764 52.708 1.00 68.71 C ATOM 2537 CB ALA 352 10.030 18.415 52.859 1.00 68.71 C ATOM 2538 C ALA 352 7.776 17.963 53.721 1.00 68.71 C ATOM 2539 O ALA 352 7.553 18.415 54.846 1.00 68.71 O ATOM 2540 N GLU 353 7.344 16.742 53.337 1.00 94.93 N ATOM 2541 CA GLU 353 6.603 15.937 54.264 1.00 94.93 C ATOM 2542 CB GLU 353 5.165 15.702 53.762 1.00 94.93 C ATOM 2543 CG GLU 353 4.157 15.249 54.820 1.00 94.93 C ATOM 2544 CD GLU 353 2.765 15.369 54.206 1.00 94.93 C ATOM 2545 OE1 GLU 353 2.679 15.751 53.009 1.00 94.93 O ATOM 2546 OE2 GLU 353 1.770 15.083 54.924 1.00 94.93 O ATOM 2547 C GLU 353 7.308 14.616 54.369 1.00 94.93 C ATOM 2548 O GLU 353 7.300 13.821 53.431 1.00 94.93 O ATOM 2549 N GLU 354 7.940 14.337 55.525 1.00 66.28 N ATOM 2550 CA GLU 354 8.645 13.098 55.668 1.00 66.28 C ATOM 2551 CB GLU 354 10.031 13.266 56.322 1.00 66.28 C ATOM 2552 CG GLU 354 11.011 14.047 55.440 1.00 66.28 C ATOM 2553 CD GLU 354 12.279 14.342 56.232 1.00 66.28 C ATOM 2554 OE1 GLU 354 13.034 13.379 56.531 1.00 66.28 O ATOM 2555 OE2 GLU 354 12.506 15.539 56.551 1.00 66.28 O ATOM 2556 C GLU 354 7.802 12.242 56.550 1.00 66.28 C ATOM 2557 O GLU 354 7.674 12.505 57.744 1.00 66.28 O ATOM 2558 N LEU 355 7.201 11.180 55.978 1.00135.97 N ATOM 2559 CA LEU 355 6.313 10.388 56.772 1.00135.97 C ATOM 2560 CB LEU 355 4.878 10.355 56.221 1.00135.97 C ATOM 2561 CG LEU 355 4.274 11.744 55.935 1.00135.97 C ATOM 2562 CD1 LEU 355 4.213 12.620 57.195 1.00135.97 C ATOM 2563 CD2 LEU 355 4.979 12.421 54.751 1.00135.97 C ATOM 2564 C LEU 355 6.778 8.966 56.747 1.00135.97 C ATOM 2565 O LEU 355 7.134 8.434 55.696 1.00135.97 O ATOM 2566 N GLY 356 6.818 8.329 57.932 1.00 46.76 N ATOM 2567 CA GLY 356 7.070 6.919 58.024 1.00 46.76 C ATOM 2568 C GLY 356 8.330 6.551 57.310 1.00 46.76 C ATOM 2569 O GLY 356 8.366 5.545 56.603 1.00 46.76 O ATOM 2570 N ASN 357 9.405 7.342 57.470 1.00 73.24 N ATOM 2571 CA ASN 357 10.609 6.989 56.770 1.00 73.24 C ATOM 2572 CB ASN 357 11.342 8.206 56.175 1.00 73.24 C ATOM 2573 CG ASN 357 10.460 8.811 55.091 1.00 73.24 C ATOM 2574 OD1 ASN 357 10.154 8.170 54.089 1.00 73.24 O ATOM 2575 ND2 ASN 357 10.035 10.087 55.299 1.00 73.24 N ATOM 2576 C ASN 357 11.551 6.379 57.756 1.00 73.24 C ATOM 2577 O ASN 357 11.833 6.969 58.797 1.00 73.24 O ATOM 2578 N ILE 358 12.077 5.173 57.464 1.00112.76 N ATOM 2579 CA ILE 358 13.012 4.602 58.389 1.00112.76 C ATOM 2580 CB ILE 358 12.765 3.150 58.718 1.00112.76 C ATOM 2581 CG2 ILE 358 12.866 2.304 57.441 1.00112.76 C ATOM 2582 CG1 ILE 358 13.697 2.711 59.859 1.00112.76 C ATOM 2583 CD1 ILE 358 13.334 1.355 60.462 1.00112.76 C ATOM 2584 C ILE 358 14.369 4.769 57.795 1.00112.76 C ATOM 2585 O ILE 358 14.697 4.212 56.747 1.00112.76 O ATOM 2586 N ILE 359 15.213 5.562 58.474 1.00190.79 N ATOM 2587 CA ILE 359 16.482 5.894 57.902 1.00190.79 C ATOM 2588 CB ILE 359 16.654 7.372 57.756 1.00190.79 C ATOM 2589 CG2 ILE 359 15.453 7.843 56.931 1.00190.79 C ATOM 2590 CG1 ILE 359 16.679 8.077 59.118 1.00190.79 C ATOM 2591 CD1 ILE 359 15.344 8.020 59.856 1.00190.79 C ATOM 2592 C ILE 359 17.569 5.370 58.774 1.00190.79 C ATOM 2593 O ILE 359 17.432 5.302 59.995 1.00190.79 O ATOM 2594 N VAL 360 18.675 4.927 58.143 1.00129.79 N ATOM 2595 CA VAL 360 19.779 4.432 58.904 1.00129.79 C ATOM 2596 CB VAL 360 19.568 3.023 59.385 1.00129.79 C ATOM 2597 CG1 VAL 360 19.555 2.086 58.166 1.00129.79 C ATOM 2598 CG2 VAL 360 20.646 2.685 60.428 1.00129.79 C ATOM 2599 C VAL 360 20.989 4.441 58.022 1.00129.79 C ATOM 2600 O VAL 360 20.888 4.606 56.807 1.00129.79 O ATOM 2601 N ALA 361 22.173 4.251 58.638 1.00226.58 N ATOM 2602 CA ALA 361 23.434 4.168 57.956 1.00226.58 C ATOM 2603 CB ALA 361 23.456 3.081 56.865 1.00226.58 C ATOM 2604 C ALA 361 23.832 5.464 57.314 1.00226.58 C ATOM 2605 O ALA 361 24.683 5.466 56.426 1.00226.58 O ATOM 2606 N TRP 362 23.265 6.606 57.749 1.00198.18 N ATOM 2607 CA TRP 362 23.714 7.865 57.212 1.00198.18 C ATOM 2608 CB TRP 362 22.640 8.858 56.768 1.00198.18 C ATOM 2609 CG TRP 362 22.170 8.667 55.371 1.00198.18 C ATOM 2610 CD2 TRP 362 21.068 7.841 55.011 1.00198.18 C ATOM 2611 CD1 TRP 362 22.656 9.208 54.218 1.00198.18 C ATOM 2612 NE1 TRP 362 21.919 8.762 53.152 1.00198.18 N ATOM 2613 CE2 TRP 362 20.937 7.924 53.632 1.00198.18 C ATOM 2614 CE3 TRP 362 20.244 7.066 55.773 1.00198.18 C ATOM 2615 CZ2 TRP 362 19.968 7.230 52.993 1.00198.18 C ATOM 2616 CZ3 TRP 362 19.249 6.384 55.119 1.00198.18 C ATOM 2617 CH2 TRP 362 19.124 6.476 53.753 1.00198.18 H ATOM 2618 C TRP 362 24.396 8.611 58.293 1.00198.18 C ATOM 2619 O TRP 362 24.128 8.392 59.471 1.00198.18 O ATOM 2620 N ASN 363 25.332 9.506 57.927 1.00 95.71 N ATOM 2621 CA ASN 363 25.910 10.202 59.025 1.00 95.71 C ATOM 2622 CB ASN 363 27.179 10.990 58.640 1.00 95.71 C ATOM 2623 CG ASN 363 28.256 9.965 58.301 1.00 95.71 C ATOM 2624 OD1 ASN 363 28.398 9.541 57.155 1.00 95.71 O ATOM 2625 ND2 ASN 363 29.037 9.549 59.333 1.00 95.71 N ATOM 2626 C ASN 363 24.831 11.050 59.662 1.00 95.71 C ATOM 2627 O ASN 363 24.523 10.805 60.826 1.00 95.71 O ATOM 2628 N PRO 364 24.216 12.030 59.015 1.00100.57 N ATOM 2629 CA PRO 364 23.069 12.628 59.666 1.00100.57 C ATOM 2630 CD PRO 364 25.034 13.075 58.417 1.00100.57 C ATOM 2631 CB PRO 364 23.162 14.142 59.469 1.00100.57 C ATOM 2632 CG PRO 364 24.130 14.306 58.296 1.00100.57 C ATOM 2633 C PRO 364 21.771 12.057 59.173 1.00100.57 C ATOM 2634 O PRO 364 21.686 11.720 57.992 1.00100.57 O ATOM 2635 N ASN 365 20.742 11.962 60.042 1.00 73.92 N ATOM 2636 CA ASN 365 19.471 11.433 59.632 1.00 73.92 C ATOM 2637 CB ASN 365 18.555 11.112 60.827 1.00 73.92 C ATOM 2638 CG ASN 365 19.159 9.938 61.588 1.00 73.92 C ATOM 2639 OD1 ASN 365 18.565 9.435 62.542 1.00 73.92 O ATOM 2640 ND2 ASN 365 20.370 9.485 61.166 1.00 73.92 N ATOM 2641 C ASN 365 18.734 12.385 58.730 1.00 73.92 C ATOM 2642 O ASN 365 18.374 12.023 57.610 1.00 73.92 O ATOM 2643 N LEU 366 18.493 13.640 59.181 1.00109.98 N ATOM 2644 CA LEU 366 17.735 14.545 58.356 1.00109.98 C ATOM 2645 CB LEU 366 16.205 14.472 58.555 1.00109.98 C ATOM 2646 CG LEU 366 15.545 13.125 58.187 1.00109.98 C ATOM 2647 CD1 LEU 366 15.836 12.739 56.728 1.00109.98 C ATOM 2648 CD2 LEU 366 15.857 12.017 59.207 1.00109.98 C ATOM 2649 C LEU 366 18.123 15.958 58.673 1.00109.98 C ATOM 2650 O LEU 366 18.492 16.279 59.801 1.00109.98 O ATOM 2651 N TRP 367 18.064 16.842 57.655 1.00110.30 N ATOM 2652 CA TRP 367 18.320 18.239 57.872 1.00110.30 C ATOM 2653 CB TRP 367 19.616 18.723 57.198 1.00110.30 C ATOM 2654 CG TRP 367 19.991 20.160 57.475 1.00110.30 C ATOM 2655 CD2 TRP 367 20.860 20.561 58.545 1.00110.30 C ATOM 2656 CD1 TRP 367 19.650 21.301 56.808 1.00110.30 C ATOM 2657 NE1 TRP 367 20.252 22.388 57.398 1.00110.30 N ATOM 2658 CE2 TRP 367 21.000 21.946 58.469 1.00110.30 C ATOM 2659 CE3 TRP 367 21.495 19.832 59.510 1.00110.30 C ATOM 2660 CZ2 TRP 367 21.785 22.627 59.356 1.00110.30 C ATOM 2661 CZ3 TRP 367 22.276 20.522 60.412 1.00110.30 C ATOM 2662 CH2 TRP 367 22.417 21.892 60.335 1.00110.30 H ATOM 2663 C TRP 367 17.190 18.965 57.207 1.00110.30 C ATOM 2664 O TRP 367 16.993 18.827 56.001 1.00110.30 O ATOM 2665 N LYS 368 16.414 19.766 57.969 1.00137.27 N ATOM 2666 CA LYS 368 15.302 20.433 57.350 1.00137.27 C ATOM 2667 CB LYS 368 13.939 19.952 57.881 1.00137.27 C ATOM 2668 CG LYS 368 13.548 18.548 57.410 1.00137.27 C ATOM 2669 CD LYS 368 13.242 18.455 55.911 1.00137.27 C ATOM 2670 CE LYS 368 14.439 18.734 55.001 1.00137.27 C ATOM 2671 NZ LYS 368 14.041 18.599 53.581 1.00137.27 N ATOM 2672 C LYS 368 15.383 21.901 57.626 1.00137.27 C ATOM 2673 O LYS 368 15.242 22.342 58.766 1.00137.27 O ATOM 2674 N LYS 369 15.702 22.689 56.580 1.00136.19 N ATOM 2675 CA LYS 369 15.726 24.121 56.653 1.00136.19 C ATOM 2676 CB LYS 369 16.601 24.753 55.557 1.00136.19 C ATOM 2677 CG LYS 369 18.086 24.413 55.723 1.00136.19 C ATOM 2678 CD LYS 369 18.671 24.853 57.067 1.00136.19 C ATOM 2679 CE LYS 369 19.138 26.310 57.104 1.00136.19 C ATOM 2680 NZ LYS 369 19.546 26.663 58.487 1.00136.19 N ATOM 2681 C LYS 369 14.341 24.700 56.565 1.00136.19 C ATOM 2682 O LYS 369 14.003 25.630 57.296 1.00136.19 O ATOM 2683 N GLY 370 13.487 24.147 55.678 1.00 61.15 N ATOM 2684 CA GLY 370 12.203 24.742 55.424 1.00 61.15 C ATOM 2685 C GLY 370 11.382 24.739 56.668 1.00 61.15 C ATOM 2686 O GLY 370 11.328 23.756 57.404 1.00 61.15 O ATOM 2687 N THR 371 10.682 25.863 56.912 1.00251.21 N ATOM 2688 CA THR 371 9.821 25.926 58.048 1.00251.21 C ATOM 2689 CB THR 371 9.614 27.316 58.581 1.00251.21 C ATOM 2690 OG1 THR 371 10.860 27.882 58.962 1.00251.21 O ATOM 2691 CG2 THR 371 8.667 27.249 59.792 1.00251.21 C ATOM 2692 C THR 371 8.522 25.415 57.530 1.00251.21 C ATOM 2693 O THR 371 8.076 25.813 56.456 1.00251.21 O ATOM 2694 N ASN 372 7.873 24.539 58.313 1.00241.16 N ATOM 2695 CA ASN 372 6.699 23.827 57.906 1.00241.16 C ATOM 2696 CB ASN 372 5.677 24.689 57.143 1.00241.16 C ATOM 2697 CG ASN 372 5.103 25.698 58.127 1.00241.16 C ATOM 2698 OD1 ASN 372 5.751 26.055 59.111 1.00241.16 O ATOM 2699 ND2 ASN 372 3.853 26.162 57.862 1.00241.16 N ATOM 2700 C ASN 372 7.138 22.702 57.032 1.00241.16 C ATOM 2701 O ASN 372 6.324 22.019 56.414 1.00241.16 O ATOM 2702 N GLY 373 8.465 22.470 57.016 1.00 91.76 N ATOM 2703 CA GLY 373 9.111 21.389 56.334 1.00 91.76 C ATOM 2704 C GLY 373 9.584 20.475 57.411 1.00 91.76 C ATOM 2705 O GLY 373 9.108 19.355 57.559 1.00 91.76 O ATOM 2706 N TYR 374 10.575 20.930 58.195 1.00153.85 N ATOM 2707 CA TYR 374 11.022 20.102 59.272 1.00153.85 C ATOM 2708 CB TYR 374 12.138 20.722 60.136 1.00153.85 C ATOM 2709 CG TYR 374 12.456 19.708 61.188 1.00153.85 C ATOM 2710 CD1 TYR 374 11.747 19.676 62.371 1.00153.85 C ATOM 2711 CD2 TYR 374 13.457 18.785 60.995 1.00153.85 C ATOM 2712 CE1 TYR 374 12.024 18.745 63.340 1.00153.85 C ATOM 2713 CE2 TYR 374 13.744 17.849 61.964 1.00153.85 C ATOM 2714 CZ TYR 374 13.024 17.825 63.135 1.00153.85 C ATOM 2715 OH TYR 374 13.307 16.870 64.132 1.00153.85 H ATOM 2716 C TYR 374 9.835 19.854 60.149 1.00153.85 C ATOM 2717 O TYR 374 9.668 18.745 60.654 1.00153.85 O ATOM 2718 N PRO 375 8.993 20.831 60.366 1.00205.90 N ATOM 2719 CA PRO 375 7.838 20.563 61.167 1.00205.90 C ATOM 2720 CD PRO 375 9.429 22.215 60.518 1.00205.90 C ATOM 2721 CB PRO 375 7.184 21.917 61.422 1.00205.90 C ATOM 2722 CG PRO 375 8.384 22.884 61.432 1.00205.90 C ATOM 2723 C PRO 375 6.963 19.539 60.523 1.00205.90 C ATOM 2724 O PRO 375 6.141 18.949 61.223 1.00205.90 O ATOM 2725 N ILE 376 7.092 19.306 59.202 1.00132.17 N ATOM 2726 CA ILE 376 6.264 18.273 58.676 1.00132.17 C ATOM 2727 CB ILE 376 5.809 18.528 57.269 1.00132.17 C ATOM 2728 CG2 ILE 376 5.087 17.266 56.769 1.00132.17 C ATOM 2729 CG1 ILE 376 4.931 19.791 57.219 1.00132.17 C ATOM 2730 CD1 ILE 376 3.653 19.678 58.050 1.00132.17 C ATOM 2731 C ILE 376 7.081 17.024 58.696 1.00132.17 C ATOM 2732 O ILE 376 7.832 16.730 57.767 1.00132.17 O ATOM 2733 N PHE 377 6.968 16.272 59.805 1.00 56.34 N ATOM 2734 CA PHE 377 7.654 15.022 59.930 1.00 56.34 C ATOM 2735 CB PHE 377 9.034 15.162 60.596 1.00 56.34 C ATOM 2736 CG PHE 377 9.667 13.817 60.688 1.00 56.34 C ATOM 2737 CD1 PHE 377 10.394 13.305 59.640 1.00 56.34 C ATOM 2738 CD2 PHE 377 9.539 13.069 61.838 1.00 56.34 C ATOM 2739 CE1 PHE 377 10.981 12.063 59.734 1.00 56.34 C ATOM 2740 CE2 PHE 377 10.123 11.829 61.937 1.00 56.34 C ATOM 2741 CZ PHE 377 10.845 11.323 60.883 1.00 56.34 C ATOM 2742 C PHE 377 6.813 14.184 60.831 1.00 56.34 C ATOM 2743 O PHE 377 6.355 14.654 61.873 1.00 56.34 O ATOM 2744 N GLN 378 6.554 12.922 60.442 1.00121.54 N ATOM 2745 CA GLN 378 5.825 12.073 61.333 1.00121.54 C ATOM 2746 CB GLN 378 4.319 11.944 61.042 1.00121.54 C ATOM 2747 CG GLN 378 3.991 11.184 59.757 1.00121.54 C ATOM 2748 CD GLN 378 2.478 11.069 59.671 1.00121.54 C ATOM 2749 OE1 GLN 378 1.911 9.988 59.828 1.00121.54 O ATOM 2750 NE2 GLN 378 1.798 12.221 59.429 1.00121.54 N ATOM 2751 C GLN 378 6.395 10.710 61.169 1.00121.54 C ATOM 2752 O GLN 378 6.658 10.269 60.053 1.00121.54 O ATOM 2753 N TRP 379 6.618 10.002 62.287 1.00286.94 N ATOM 2754 CA TRP 379 7.156 8.685 62.146 1.00286.94 C ATOM 2755 CB TRP 379 8.683 8.649 62.380 1.00286.94 C ATOM 2756 CG TRP 379 9.397 7.343 62.106 1.00286.94 C ATOM 2757 CD2 TRP 379 10.830 7.219 62.069 1.00286.94 C ATOM 2758 CD1 TRP 379 8.902 6.099 61.839 1.00286.94 C ATOM 2759 NE1 TRP 379 9.932 5.210 61.650 1.00286.94 N ATOM 2760 CE2 TRP 379 11.124 5.889 61.784 1.00286.94 C ATOM 2761 CE3 TRP 379 11.819 8.144 62.252 1.00286.94 C ATOM 2762 CZ2 TRP 379 12.417 5.458 61.679 1.00286.94 C ATOM 2763 CZ3 TRP 379 13.123 7.707 62.151 1.00286.94 C ATOM 2764 CH2 TRP 379 13.416 6.388 61.868 1.00286.94 H ATOM 2765 C TRP 379 6.487 7.838 63.173 1.00286.94 C ATOM 2766 O TRP 379 6.088 8.327 64.228 1.00286.94 O ATOM 2767 N SER 380 6.319 6.537 62.878 1.00 65.02 N ATOM 2768 CA SER 380 5.733 5.677 63.852 1.00 65.02 C ATOM 2769 CB SER 380 5.664 4.216 63.385 1.00 65.02 C ATOM 2770 OG SER 380 6.975 3.702 63.210 1.00 65.02 O ATOM 2771 C SER 380 6.652 5.755 65.016 1.00 65.02 C ATOM 2772 O SER 380 6.212 5.897 66.152 1.00 65.02 O ATOM 2773 N GLU 381 7.971 5.697 64.746 1.00 99.18 N ATOM 2774 CA GLU 381 8.954 5.827 65.779 1.00 99.18 C ATOM 2775 CB GLU 381 10.390 5.983 65.241 1.00 99.18 C ATOM 2776 CG GLU 381 11.021 4.695 64.711 1.00 99.18 C ATOM 2777 CD GLU 381 11.450 3.866 65.915 1.00 99.18 C ATOM 2778 OE1 GLU 381 11.262 4.358 67.059 1.00 99.18 O ATOM 2779 OE2 GLU 381 11.961 2.733 65.712 1.00 99.18 O ATOM 2780 C GLU 381 8.628 7.122 66.508 1.00 99.18 C ATOM 2781 O GLU 381 8.625 7.110 67.767 1.00 99.18 O ATOM 2782 OXT GLU 381 8.372 8.137 65.809 1.00 99.18 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 108.09 18.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 119.50 4.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 108.32 18.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 106.94 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.94 26.9 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 98.76 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 71.11 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.18 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 97.07 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.06 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 88.00 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 74.42 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 91.01 30.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 91.53 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.53 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 76.66 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 52.91 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 91.53 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 5.51 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 5.51 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 5.51 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.85 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.85 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2853 CRMSCA SECONDARY STRUCTURE . . 8.70 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.76 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.26 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.84 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.59 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.84 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.85 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.69 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.80 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.44 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.79 120 100.0 120 CRMSSC BURIED . . . . . . . . 9.41 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.73 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.43 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.82 224 100.0 224 CRMSALL BURIED . . . . . . . . 9.01 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 123.325 0.853 0.866 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 113.902 0.845 0.859 11 100.0 11 ERRCA SURFACE . . . . . . . . 124.384 0.862 0.873 26 100.0 26 ERRCA BURIED . . . . . . . . 117.819 0.809 0.832 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 124.645 0.856 0.868 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 115.408 0.848 0.862 54 100.0 54 ERRMC SURFACE . . . . . . . . 124.657 0.860 0.872 129 100.0 129 ERRMC BURIED . . . . . . . . 124.572 0.828 0.847 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 132.399 0.844 0.858 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 135.074 0.844 0.858 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 124.949 0.843 0.857 41 100.0 41 ERRSC SURFACE . . . . . . . . 129.451 0.840 0.854 120 100.0 120 ERRSC BURIED . . . . . . . . 167.771 0.895 0.901 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 128.078 0.850 0.863 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 119.357 0.845 0.859 85 100.0 85 ERRALL SURFACE . . . . . . . . 127.179 0.851 0.864 224 100.0 224 ERRALL BURIED . . . . . . . . 134.787 0.844 0.860 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 5 22 31 31 DISTCA CA (P) 0.00 3.23 3.23 16.13 70.97 31 DISTCA CA (RMS) 0.00 1.80 1.80 3.63 7.30 DISTCA ALL (N) 0 4 9 26 164 254 254 DISTALL ALL (P) 0.00 1.57 3.54 10.24 64.57 254 DISTALL ALL (RMS) 0.00 1.54 2.13 3.58 7.56 DISTALL END of the results output