####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 296), selected 31 , name T0537TS408_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS408_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.98 19.77 LCS_AVERAGE: 50.26 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.54 26.55 LCS_AVERAGE: 20.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 374 - 379 0.92 26.73 LCS_AVERAGE: 13.94 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 17 3 4 4 4 5 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT A 352 A 352 5 6 17 4 4 5 5 7 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT E 353 E 353 5 6 17 4 4 5 5 7 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT E 354 E 354 5 6 17 4 4 5 5 7 7 8 10 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT L 355 L 355 5 6 17 4 4 5 5 7 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT G 356 G 356 5 6 17 3 4 5 5 7 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT N 357 N 357 3 6 17 3 3 4 5 6 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT I 358 I 358 3 5 17 3 3 4 5 5 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT I 359 I 359 4 4 17 3 3 4 5 5 7 9 12 12 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT V 360 V 360 4 4 17 3 4 4 4 6 6 7 9 10 13 13 13 15 15 16 17 18 18 18 18 LCS_GDT A 361 A 361 4 6 17 3 4 4 4 6 6 7 9 11 13 14 14 15 15 16 17 18 18 18 18 LCS_GDT W 362 W 362 4 6 17 4 5 6 7 7 8 11 12 12 13 14 14 15 15 16 17 18 18 18 19 LCS_GDT N 363 N 363 3 6 17 3 5 6 7 7 8 11 12 12 13 14 14 15 15 16 17 18 18 18 19 LCS_GDT P 364 P 364 3 6 17 4 5 6 7 7 8 11 12 12 13 14 14 15 15 16 17 18 18 18 19 LCS_GDT N 365 N 365 3 6 17 3 3 4 7 7 9 11 12 12 13 14 14 15 15 16 17 18 18 18 19 LCS_GDT L 366 L 366 3 7 17 3 3 4 5 7 9 11 11 12 13 14 14 15 15 16 17 18 18 18 19 LCS_GDT W 367 W 367 3 7 17 3 3 4 5 7 9 9 10 12 13 13 14 14 14 14 17 18 18 18 19 LCS_GDT K 368 K 368 4 7 15 0 3 4 5 7 9 11 11 12 13 13 14 14 14 14 14 18 18 18 19 LCS_GDT K 369 K 369 4 7 15 1 3 4 5 7 9 11 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT G 370 G 370 4 7 15 4 5 6 7 7 9 11 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT T 371 T 371 4 7 15 3 5 6 7 7 9 11 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT N 372 N 372 4 8 15 4 5 6 7 7 9 11 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT G 373 G 373 5 8 15 3 4 6 7 7 9 11 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT Y 374 Y 374 6 8 15 3 4 6 7 7 8 9 11 12 13 13 14 14 14 14 14 15 17 18 19 LCS_GDT P 375 P 375 6 8 15 3 4 6 7 7 8 8 8 9 9 9 10 10 11 11 13 15 17 18 19 LCS_GDT I 376 I 376 6 8 14 3 4 6 7 7 8 8 8 9 9 9 10 10 11 13 13 15 17 18 19 LCS_GDT F 377 F 377 6 8 12 3 4 6 7 7 8 8 8 9 9 9 10 10 11 11 12 14 15 18 19 LCS_GDT Q 378 Q 378 6 8 12 3 4 6 7 7 8 8 8 9 9 9 10 10 11 11 12 14 14 18 18 LCS_GDT W 379 W 379 6 8 12 3 4 6 7 7 8 8 8 9 9 9 10 10 11 11 17 17 17 18 19 LCS_GDT S 380 S 380 4 4 12 3 3 4 4 4 4 5 7 8 9 9 10 10 11 11 13 14 17 18 19 LCS_GDT E 381 E 381 4 4 12 0 3 4 4 4 5 7 7 8 8 9 10 10 11 14 17 17 17 18 19 LCS_AVERAGE LCS_A: 28.23 ( 13.94 20.50 50.26 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 7 9 11 12 12 13 14 14 15 15 16 17 18 18 18 19 GDT PERCENT_AT 12.90 16.13 19.35 22.58 22.58 29.03 35.48 38.71 38.71 41.94 45.16 45.16 48.39 48.39 51.61 54.84 58.06 58.06 58.06 61.29 GDT RMS_LOCAL 0.33 0.48 0.81 1.19 1.17 2.39 2.67 3.05 2.90 3.14 3.56 3.56 4.01 4.01 4.33 4.98 5.56 5.56 5.56 7.30 GDT RMS_ALL_AT 26.62 18.46 18.47 27.12 18.49 21.06 19.20 21.85 19.25 19.36 21.79 21.79 20.96 20.96 20.64 19.77 18.96 18.96 18.96 18.45 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.709 0 0.351 0.562 5.838 59.762 48.651 LGA A 352 A 352 3.602 0 0.742 0.691 5.868 57.619 50.381 LGA E 353 E 353 2.984 0 0.072 1.351 5.692 47.262 36.614 LGA E 354 E 354 5.859 0 0.031 1.285 12.751 26.548 13.439 LGA L 355 L 355 3.908 0 0.539 0.640 9.212 43.690 27.440 LGA G 356 G 356 2.762 0 0.144 0.144 4.970 53.333 53.333 LGA N 357 N 357 3.622 0 0.489 0.375 8.374 55.595 35.595 LGA I 358 I 358 2.446 0 0.071 0.351 4.283 57.262 54.881 LGA I 359 I 359 3.691 0 0.460 0.817 5.567 46.905 43.214 LGA V 360 V 360 7.921 0 0.123 0.180 12.457 12.738 7.279 LGA A 361 A 361 6.045 0 0.638 0.572 7.961 33.571 28.286 LGA W 362 W 362 2.509 0 0.198 0.507 11.006 55.595 25.646 LGA N 363 N 363 1.484 0 0.171 0.934 4.997 79.286 59.107 LGA P 364 P 364 3.547 0 0.593 0.667 7.001 50.238 37.687 LGA N 365 N 365 2.445 0 0.171 1.305 7.029 45.238 38.690 LGA L 366 L 366 9.123 0 0.151 0.915 12.362 4.643 2.381 LGA W 367 W 367 13.977 0 0.478 0.624 16.192 0.000 0.000 LGA K 368 K 368 16.859 0 0.277 0.997 19.897 0.000 0.000 LGA K 369 K 369 22.903 0 0.656 0.654 26.900 0.000 0.000 LGA G 370 G 370 25.985 0 0.640 0.640 29.001 0.000 0.000 LGA T 371 T 371 31.919 0 0.602 0.495 33.970 0.000 0.000 LGA N 372 N 372 36.700 0 0.659 1.282 38.611 0.000 0.000 LGA G 373 G 373 36.607 0 0.038 0.038 36.610 0.000 0.000 LGA Y 374 Y 374 34.280 0 0.347 0.978 35.569 0.000 0.000 LGA P 375 P 375 33.103 0 0.098 0.370 34.320 0.000 0.000 LGA I 376 I 376 31.128 0 0.251 1.101 31.906 0.000 0.000 LGA F 377 F 377 30.627 0 0.680 0.949 33.266 0.000 0.000 LGA Q 378 Q 378 29.948 0 0.366 1.331 34.124 0.000 0.000 LGA W 379 W 379 33.153 0 0.236 1.165 36.659 0.000 0.000 LGA S 380 S 380 35.323 0 0.473 0.468 39.420 0.000 0.000 LGA E 381 E 381 40.733 0 0.077 1.192 46.170 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 12.026 12.001 12.401 23.525 18.149 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 3.05 33.065 30.210 0.381 LGA_LOCAL RMSD: 3.054 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.846 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 12.026 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.425836 * X + -0.060216 * Y + -0.902794 * Z + 48.676689 Y_new = 0.157395 * X + 0.987500 * Y + 0.008375 * Z + -83.317566 Z_new = 0.891005 * X + -0.145661 * Y + 0.429991 * Z + -6.663256 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.354040 -1.099555 -0.326622 [DEG: 20.2850 -62.9999 -18.7140 ] ZXZ: -1.580073 1.126314 1.732843 [DEG: -90.5315 64.5330 99.2846 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS408_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS408_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 3.05 30.210 12.03 REMARK ---------------------------------------------------------- MOLECULE T0537TS408_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyh_B 1bhe_A 2qy1_A ATOM 2945 H SER 351 5.288 14.599 49.153 1.00 70.46 H ATOM 2944 N SER 351 5.947 14.477 49.804 1.00 67.73 N ATOM 2943 CA SER 351 6.146 15.429 50.885 1.00 68.21 C ATOM 2946 CB SER 351 6.260 16.866 50.342 1.00 79.18 C ATOM 2947 C SER 351 4.943 15.172 51.781 1.00 64.92 C ATOM 2948 O SER 351 3.793 15.723 52.012 1.00 68.65 O ATOM 2949 OG SER 351 6.180 17.771 51.414 1.00 78.63 O ATOM 2952 H ALA 352 6.309 13.931 52.259 1.00 59.34 H ATOM 2951 N ALA 352 5.431 14.195 52.428 1.00 60.44 N ATOM 2950 CA ALA 352 4.682 13.492 53.321 1.00 58.60 C ATOM 2953 CB ALA 352 5.335 12.161 53.766 1.00 56.31 C ATOM 2954 C ALA 352 4.462 14.531 54.270 1.00 57.25 C ATOM 2955 O ALA 352 5.539 15.033 54.552 1.00 56.99 O ATOM 2958 H GLU 353 2.705 14.405 55.134 1.00 59.27 H ATOM 2957 N GLU 353 3.501 14.902 55.020 1.00 58.12 N ATOM 2956 CA GLU 353 3.733 16.192 55.625 1.00 57.73 C ATOM 2959 CB GLU 353 2.502 16.527 56.461 1.00 58.75 C ATOM 2960 C GLU 353 4.898 16.349 56.528 1.00 55.75 C ATOM 2961 O GLU 353 5.551 17.383 56.512 1.00 56.10 O ATOM 2962 CG GLU 353 1.430 16.696 55.367 1.00 62.43 C ATOM 2963 CD GLU 353 0.693 15.447 54.978 1.00 62.96 C ATOM 2964 OE1 GLU 353 0.832 14.538 55.810 1.00 62.41 O ATOM 2965 OE2 GLU 353 0.108 15.375 53.860 1.00 64.57 O ATOM 2968 H GLU 354 4.643 14.735 57.617 1.00 55.25 H ATOM 2967 N GLU 354 5.189 15.473 57.389 1.00 55.03 N ATOM 2966 CA GLU 354 6.438 15.788 58.015 1.00 54.56 C ATOM 2969 CB GLU 354 6.666 14.977 59.270 1.00 54.51 C ATOM 2970 C GLU 354 7.598 15.633 57.035 1.00 55.38 C ATOM 2971 O GLU 354 8.496 16.487 56.906 1.00 55.90 O ATOM 2972 CG GLU 354 7.963 15.343 60.011 1.00 54.57 C ATOM 2973 CD GLU 354 8.090 16.747 60.627 1.00 55.96 C ATOM 2974 OE1 GLU 354 7.068 17.468 60.792 1.00 56.44 O ATOM 2975 OE2 GLU 354 9.229 17.264 60.899 1.00 57.88 O ATOM 2978 H LEU 355 6.864 13.812 56.299 1.00 56.66 H ATOM 2977 N LEU 355 7.553 14.482 56.251 1.00 56.23 N ATOM 2976 CA LEU 355 8.790 14.338 55.505 1.00 56.76 C ATOM 2979 CB LEU 355 9.165 12.849 55.544 1.00 57.47 C ATOM 2980 C LEU 355 9.003 14.177 54.011 1.00 57.01 C ATOM 2981 O LEU 355 8.686 13.176 53.371 1.00 56.74 O ATOM 2982 CG LEU 355 9.390 12.523 56.983 1.00 56.28 C ATOM 2983 CD1 LEU 355 9.836 11.131 56.961 1.00 55.71 C ATOM 2984 CD2 LEU 355 10.423 13.441 57.581 1.00 55.65 C ATOM 2987 H GLY 356 9.726 15.893 54.426 1.00 56.77 H ATOM 2986 N GLY 356 9.710 15.270 53.733 1.00 57.01 N ATOM 2985 CA GLY 356 10.452 15.681 52.585 1.00 57.21 C ATOM 2988 C GLY 356 11.745 14.823 52.467 1.00 56.41 C ATOM 2989 O GLY 356 12.378 14.783 51.419 1.00 56.18 O ATOM 2992 H ASN 357 11.667 14.441 54.364 1.00 56.77 H ATOM 2991 N ASN 357 12.215 14.312 53.610 1.00 56.57 N ATOM 2990 CA ASN 357 13.437 13.600 53.846 1.00 55.75 C ATOM 2993 CB ASN 357 14.057 13.928 55.198 1.00 56.43 C ATOM 2994 C ASN 357 13.370 12.079 53.684 1.00 55.52 C ATOM 2995 O ASN 357 13.491 11.253 54.588 1.00 56.16 O ATOM 2996 CG ASN 357 14.871 15.164 54.917 1.00 56.49 C ATOM 2997 ND2 ASN 357 15.242 15.895 55.928 1.00 57.20 N ATOM 2998 HD21 ASN 357 14.994 15.623 56.796 1.00 57.31 H ATOM 2999 HD22 ASN 357 15.756 16.671 55.777 1.00 58.35 H ATOM 3000 OD1 ASN 357 15.195 15.409 53.746 1.00 57.00 O ATOM 3003 H ILE 358 13.050 12.436 51.853 1.00 54.83 H ATOM 3002 N ILE 358 13.302 11.743 52.425 1.00 54.89 N ATOM 3001 CA ILE 358 13.455 10.408 51.864 1.00 59.00 C ATOM 3004 CB ILE 358 13.708 10.432 50.362 1.00 54.19 C ATOM 3005 C ILE 358 14.783 9.853 52.080 1.00 54.96 C ATOM 3006 O ILE 358 14.837 8.772 52.512 1.00 56.36 O ATOM 3007 CG1 ILE 358 12.615 10.986 49.539 1.00 54.76 C ATOM 3008 CD1 ILE 358 12.906 11.173 48.095 1.00 56.46 C ATOM 3009 CG2 ILE 358 13.798 8.946 50.064 1.00 54.85 C ATOM 3012 H ILE 359 15.363 11.636 51.757 1.00 54.31 H ATOM 3011 N ILE 359 15.703 10.765 51.863 1.00 54.64 N ATOM 3010 CA ILE 359 17.139 10.684 51.757 1.00 55.21 C ATOM 3013 CB ILE 359 17.279 12.175 51.848 1.00 55.01 C ATOM 3014 C ILE 359 18.095 10.311 52.797 1.00 55.18 C ATOM 3015 O ILE 359 18.296 10.648 53.880 1.00 54.33 O ATOM 3016 CG1 ILE 359 16.883 12.542 50.443 1.00 55.61 C ATOM 3017 CD1 ILE 359 17.745 12.035 49.361 1.00 56.43 C ATOM 3018 CG2 ILE 359 18.431 12.785 52.610 1.00 55.41 C ATOM 3021 H VAL 360 18.415 9.516 51.200 1.00 55.65 H ATOM 3020 N VAL 360 18.738 9.544 52.082 1.00 55.61 N ATOM 3019 CA VAL 360 19.799 8.732 52.264 1.00 55.69 C ATOM 3022 CB VAL 360 19.766 8.009 50.948 1.00 55.73 C ATOM 3023 C VAL 360 20.915 9.610 52.636 1.00 55.62 C ATOM 3024 O VAL 360 21.703 9.067 53.314 1.00 55.36 O ATOM 3025 CG1 VAL 360 20.992 7.127 50.682 1.00 56.00 C ATOM 3026 CG2 VAL 360 18.487 7.185 51.006 1.00 56.01 C ATOM 3029 H ALA 361 20.864 11.246 51.507 1.00 55.23 H ATOM 3028 N ALA 361 21.264 10.774 52.207 1.00 55.62 N ATOM 3027 CA ALA 361 22.349 11.254 53.043 1.00 59.24 C ATOM 3030 CB ALA 361 22.849 12.619 52.572 1.00 56.03 C ATOM 3031 C ALA 361 21.753 11.388 54.434 1.00 56.26 C ATOM 3032 O ALA 361 20.823 12.122 54.709 1.00 57.30 O ATOM 3035 H TRP 362 23.225 10.450 55.097 1.00 55.11 H ATOM 3034 N TRP 362 22.391 10.804 55.378 1.00 55.53 N ATOM 3033 CA TRP 362 22.149 10.558 56.758 1.00 60.93 C ATOM 3036 CB TRP 362 22.667 9.100 56.929 1.00 55.86 C ATOM 3037 C TRP 362 22.401 11.921 57.543 1.00 55.38 C ATOM 3038 O TRP 362 22.223 11.947 58.792 1.00 55.28 O ATOM 3039 CG TRP 362 21.609 8.145 56.393 1.00 55.95 C ATOM 3040 CD1 TRP 362 20.374 8.660 56.280 1.00 56.08 C ATOM 3041 NE1 TRP 362 19.487 7.720 55.883 1.00 56.06 N ATOM 3042 HE1 TRP 362 18.558 7.869 55.746 1.00 56.27 H ATOM 3043 CD2 TRP 362 21.541 6.807 55.861 1.00 55.87 C ATOM 3044 CE2 TRP 362 20.181 6.564 55.556 1.00 55.75 C ATOM 3045 CE3 TRP 362 22.518 5.892 55.394 1.00 55.50 C ATOM 3046 CZ3 TRP 362 22.117 4.890 54.482 1.00 55.37 C ATOM 3047 CH2 TRP 362 20.759 4.704 54.180 1.00 55.21 H ATOM 3048 CZ2 TRP 362 19.763 5.441 54.830 1.00 55.63 C ATOM 3051 H ASN 363 23.383 12.812 56.072 1.00 55.19 H ATOM 3050 N ASN 363 22.973 12.981 56.902 1.00 55.13 N ATOM 3049 CA ASN 363 23.011 14.363 57.405 1.00 58.54 C ATOM 3052 CB ASN 363 21.731 15.195 57.289 1.00 57.36 C ATOM 3053 C ASN 363 23.515 14.473 58.806 1.00 54.51 C ATOM 3054 O ASN 363 22.825 14.867 59.747 1.00 55.35 O ATOM 3055 CG ASN 363 22.275 16.589 57.550 1.00 57.86 C ATOM 3056 ND2 ASN 363 23.261 16.940 56.740 1.00 58.04 N ATOM 3057 HD21 ASN 363 23.544 16.328 56.081 1.00 58.07 H ATOM 3058 HD22 ASN 363 23.669 17.784 56.844 1.00 58.97 H ATOM 3059 OD1 ASN 363 21.903 17.303 58.488 1.00 58.92 O ATOM 3061 N PRO 364 24.741 14.258 59.050 1.00 54.47 N ATOM 3060 CA PRO 364 24.959 14.327 60.470 1.00 54.92 C ATOM 3062 CB PRO 364 26.484 14.212 60.280 1.00 57.58 C ATOM 3063 C PRO 364 24.871 15.578 61.361 1.00 54.63 C ATOM 3064 O PRO 364 25.267 16.702 61.054 1.00 55.01 O ATOM 3065 CG PRO 364 26.932 14.698 58.941 1.00 57.47 C ATOM 3066 CD PRO 364 25.816 14.160 58.078 1.00 55.30 C ATOM 3069 H ASN 365 24.050 14.301 62.547 1.00 54.94 H ATOM 3068 N ASN 365 24.381 15.182 62.559 1.00 54.60 N ATOM 3067 CA ASN 365 24.245 15.832 63.921 1.00 58.35 C ATOM 3070 CB ASN 365 22.946 16.582 64.135 1.00 54.71 C ATOM 3071 C ASN 365 24.377 14.763 65.057 1.00 54.57 C ATOM 3072 O ASN 365 24.089 14.876 66.269 1.00 54.54 O ATOM 3073 CG ASN 365 21.812 15.575 64.150 1.00 54.86 C ATOM 3074 ND2 ASN 365 20.577 16.052 64.030 1.00 54.99 N ATOM 3075 HD21 ASN 365 20.460 16.982 63.938 1.00 55.84 H ATOM 3076 HD22 ASN 365 19.845 15.457 64.050 1.00 55.47 H ATOM 3077 OD1 ASN 365 22.074 14.368 64.214 1.00 57.33 O ATOM 3080 H LEU 366 25.379 13.715 63.821 1.00 54.52 H ATOM 3079 N LEU 366 24.945 13.714 64.661 1.00 54.63 N ATOM 3078 CA LEU 366 25.001 12.507 65.481 1.00 54.65 C ATOM 3081 CB LEU 366 25.574 11.554 64.472 1.00 54.73 C ATOM 3082 C LEU 366 25.660 12.593 66.837 1.00 55.01 C ATOM 3083 O LEU 366 24.985 12.743 67.827 1.00 55.36 O ATOM 3084 CG LEU 366 27.039 11.785 64.339 1.00 54.91 C ATOM 3085 CD1 LEU 366 27.929 10.641 64.102 1.00 54.93 C ATOM 3086 CD2 LEU 366 27.210 12.564 63.138 1.00 54.91 C ATOM 3089 H TRP 367 27.344 12.407 66.022 1.00 56.04 H ATOM 3088 N TRP 367 26.956 12.571 66.873 1.00 55.47 N ATOM 3087 CA TRP 367 27.965 12.742 67.929 1.00 56.77 C ATOM 3090 CB TRP 367 28.702 14.021 68.093 1.00 56.66 C ATOM 3091 C TRP 367 27.441 12.385 69.246 1.00 55.46 C ATOM 3092 O TRP 367 27.672 13.107 70.241 1.00 56.73 O ATOM 3093 CG TRP 367 28.260 14.927 67.038 1.00 55.45 C ATOM 3094 CD1 TRP 367 27.234 15.793 67.045 1.00 55.13 C ATOM 3095 NE1 TRP 367 27.118 16.379 65.808 1.00 54.51 N ATOM 3096 HE1 TRP 367 26.460 17.021 65.567 1.00 54.49 H ATOM 3097 CD2 TRP 367 28.837 14.976 65.743 1.00 55.02 C ATOM 3098 CE2 TRP 367 28.042 15.839 64.974 1.00 54.52 C ATOM 3099 CE3 TRP 367 29.929 14.337 65.141 1.00 56.59 C ATOM 3100 CZ3 TRP 367 30.156 14.562 63.804 1.00 56.90 C ATOM 3101 CH2 TRP 367 29.218 15.284 63.052 1.00 55.91 H ATOM 3102 CZ2 TRP 367 28.085 15.819 63.627 1.00 54.83 C ATOM 3105 H LYS 368 26.588 10.724 68.517 1.00 54.56 H ATOM 3104 N LYS 368 26.819 11.230 69.287 1.00 54.89 N ATOM 3103 CA LYS 368 26.578 10.808 70.603 1.00 54.80 C ATOM 3106 CB LYS 368 25.445 10.003 71.202 1.00 54.60 C ATOM 3107 C LYS 368 27.932 10.328 70.583 1.00 54.99 C ATOM 3108 O LYS 368 28.385 10.020 69.470 1.00 55.48 O ATOM 3109 CG LYS 368 24.030 9.943 70.702 1.00 54.60 C ATOM 3110 CD LYS 368 23.463 11.283 71.111 1.00 55.85 C ATOM 3111 CE LYS 368 21.950 11.493 70.893 1.00 56.43 C ATOM 3112 NZ LYS 368 21.024 10.746 71.789 1.00 55.14 N ATOM 3115 H LYS 369 28.165 10.346 72.486 1.00 54.83 H ATOM 3114 N LYS 369 28.540 10.177 71.630 1.00 55.23 N ATOM 3113 CA LYS 369 29.906 9.758 71.434 1.00 55.63 C ATOM 3116 CB LYS 369 30.653 9.664 72.756 1.00 56.11 C ATOM 3117 C LYS 369 29.741 8.513 70.531 1.00 56.82 C ATOM 3118 O LYS 369 30.735 8.195 69.847 1.00 57.32 O ATOM 3119 CG LYS 369 30.669 11.120 73.130 1.00 55.82 C ATOM 3120 CD LYS 369 31.369 11.371 74.426 1.00 56.93 C ATOM 3121 CE LYS 369 30.624 10.813 75.635 1.00 57.91 C ATOM 3122 NZ LYS 369 31.355 11.078 76.908 1.00 60.02 N ATOM 3125 H GLY 370 28.032 7.688 71.200 1.00 59.47 H ATOM 3124 N GLY 370 28.694 7.638 70.545 1.00 58.95 N ATOM 3123 CA GLY 370 28.640 6.561 69.489 1.00 63.56 C ATOM 3126 C GLY 370 29.579 5.468 69.925 1.00 60.50 C ATOM 3127 O GLY 370 29.906 4.425 69.274 1.00 60.46 O ATOM 3130 H THR 371 29.685 6.485 71.610 1.00 60.29 H ATOM 3129 N THR 371 30.043 5.778 71.110 1.00 59.82 N ATOM 3128 CA THR 371 31.094 4.987 71.642 1.00 58.95 C ATOM 3131 CB THR 371 31.984 5.478 72.789 1.00 59.31 C ATOM 3132 C THR 371 30.578 3.668 71.939 1.00 57.85 C ATOM 3133 O THR 371 29.615 3.315 72.641 1.00 59.67 O ATOM 3134 CG2 THR 371 32.951 6.564 72.341 1.00 60.94 C ATOM 3135 OG1 THR 371 31.200 5.920 73.910 1.00 60.19 O ATOM 3138 H ASN 372 31.980 3.593 70.661 1.00 56.33 H ATOM 3137 N ASN 372 31.413 3.063 71.193 1.00 57.07 N ATOM 3136 CA ASN 372 31.587 1.706 71.118 1.00 59.91 C ATOM 3139 CB ASN 372 30.375 0.918 70.670 1.00 55.79 C ATOM 3140 C ASN 372 32.845 1.725 70.288 1.00 57.12 C ATOM 3141 O ASN 372 32.820 2.422 69.258 1.00 57.09 O ATOM 3142 CG ASN 372 30.898 -0.465 70.460 1.00 57.62 C ATOM 3143 ND2 ASN 372 30.171 -1.273 69.692 1.00 62.50 N ATOM 3144 HD21 ASN 372 29.374 -0.941 69.315 1.00 65.07 H ATOM 3145 HD22 ASN 372 30.458 -2.160 69.549 1.00 65.22 H ATOM 3146 OD1 ASN 372 31.923 -0.802 71.023 1.00 57.47 O ATOM 3149 H GLY 373 34.026 0.670 71.552 1.00 57.79 H ATOM 3148 N GLY 373 33.952 1.108 70.709 1.00 57.77 N ATOM 3147 CA GLY 373 35.227 1.208 69.981 1.00 58.97 C ATOM 3150 C GLY 373 35.089 0.830 68.550 1.00 57.96 C ATOM 3151 O GLY 373 35.900 1.326 67.742 1.00 58.08 O ATOM 3154 H TYR 374 33.791 -0.611 68.917 1.00 57.24 H ATOM 3153 N TYR 374 34.219 -0.094 68.253 1.00 57.42 N ATOM 3152 CA TYR 374 33.922 -0.254 66.874 1.00 58.53 C ATOM 3155 CB TYR 374 34.052 1.054 66.127 1.00 58.98 C ATOM 3156 C TYR 374 34.695 -1.169 66.095 1.00 56.15 C ATOM 3157 O TYR 374 35.138 -0.687 65.093 1.00 56.70 O ATOM 3158 CG TYR 374 32.635 0.935 65.774 1.00 56.71 C ATOM 3159 CD1 TYR 374 31.689 1.400 66.647 1.00 57.53 C ATOM 3160 CE1 TYR 374 30.388 1.201 66.414 1.00 56.16 C ATOM 3161 CZ TYR 374 30.001 0.531 65.257 1.00 54.74 C ATOM 3162 CD2 TYR 374 32.232 0.234 64.667 1.00 55.53 C ATOM 3163 CE2 TYR 374 30.940 0.062 64.388 1.00 54.84 C ATOM 3164 OH TYR 374 28.663 0.441 64.954 1.00 54.72 H ATOM 3166 N PRO 375 34.916 -2.421 66.383 1.00 55.36 N ATOM 3165 CA PRO 375 35.665 -2.994 65.337 1.00 56.29 C ATOM 3167 CB PRO 375 35.941 -4.400 65.865 1.00 54.69 C ATOM 3168 C PRO 375 34.815 -2.960 64.158 1.00 54.95 C ATOM 3169 O PRO 375 33.543 -2.971 64.264 1.00 54.89 O ATOM 3170 CG PRO 375 34.831 -4.671 66.828 1.00 54.68 C ATOM 3171 CD PRO 375 34.698 -3.314 67.505 1.00 55.21 C ATOM 3174 H ILE 376 36.478 -2.761 62.999 1.00 55.78 H ATOM 3173 N ILE 376 35.539 -2.803 63.061 1.00 55.23 N ATOM 3172 CA ILE 376 34.638 -2.650 62.022 1.00 55.27 C ATOM 3175 CB ILE 376 34.183 -1.248 61.775 1.00 54.97 C ATOM 3176 C ILE 376 35.155 -3.442 60.875 1.00 55.29 C ATOM 3177 O ILE 376 36.227 -3.523 60.225 1.00 56.03 O ATOM 3178 CG1 ILE 376 33.102 -1.653 60.880 1.00 55.28 C ATOM 3179 CD1 ILE 376 32.254 -0.484 60.741 1.00 55.48 C ATOM 3180 CG2 ILE 376 35.101 -0.143 61.300 1.00 54.77 C ATOM 3183 H PHE 377 33.241 -3.994 60.773 1.00 54.61 H ATOM 3182 N PHE 377 34.132 -4.100 60.472 1.00 54.92 N ATOM 3181 CA PHE 377 34.577 -5.060 59.541 1.00 55.06 C ATOM 3184 CB PHE 377 33.362 -5.778 59.035 1.00 54.87 C ATOM 3185 C PHE 377 35.221 -4.545 58.258 1.00 55.20 C ATOM 3186 O PHE 377 36.058 -5.321 57.792 1.00 55.87 O ATOM 3187 CG PHE 377 33.221 -6.203 60.388 1.00 54.78 C ATOM 3188 CD1 PHE 377 33.918 -7.285 60.875 1.00 55.38 C ATOM 3189 CE1 PHE 377 33.889 -7.548 62.237 1.00 55.11 C ATOM 3190 CZ PHE 377 33.253 -6.640 63.069 1.00 55.11 C ATOM 3191 CD2 PHE 377 32.301 -5.581 61.210 1.00 54.52 C ATOM 3192 CE2 PHE 377 32.288 -5.828 62.539 1.00 54.73 C ATOM 3195 H GLN 378 34.234 -2.876 57.868 1.00 55.02 H ATOM 3194 N GLN 378 34.876 -3.477 57.552 1.00 55.27 N ATOM 3193 CA GLN 378 35.567 -3.266 56.270 1.00 55.91 C ATOM 3196 CB GLN 378 36.987 -2.785 56.308 1.00 55.37 C ATOM 3197 C GLN 378 35.309 -4.447 55.471 1.00 56.66 C ATOM 3198 O GLN 378 36.031 -5.209 54.788 1.00 61.55 O ATOM 3199 CG GLN 378 37.223 -1.971 57.560 1.00 55.42 C ATOM 3200 CD GLN 378 36.306 -0.757 57.483 1.00 55.58 C ATOM 3201 NE2 GLN 378 36.856 0.262 56.870 1.00 55.90 N ATOM 3202 HE21 GLN 378 37.734 0.166 56.540 1.00 56.17 H ATOM 3203 HE22 GLN 378 36.373 1.066 56.779 1.00 55.65 H ATOM 3204 OE1 GLN 378 35.125 -0.694 57.855 1.00 55.57 O ATOM 3207 H TRP 379 33.584 -3.694 55.891 1.00 55.84 H ATOM 3206 N TRP 379 34.050 -4.438 55.531 1.00 54.99 N ATOM 3205 CA TRP 379 33.369 -5.508 55.043 1.00 54.79 C ATOM 3208 CB TRP 379 32.100 -4.695 55.141 1.00 54.48 C ATOM 3209 C TRP 379 33.702 -5.855 53.693 1.00 55.17 C ATOM 3210 O TRP 379 33.792 -7.058 53.441 1.00 56.78 O ATOM 3211 CG TRP 379 30.907 -5.329 54.656 1.00 54.66 C ATOM 3212 CD1 TRP 379 29.972 -5.239 53.665 1.00 54.75 C ATOM 3213 NE1 TRP 379 28.955 -6.139 53.958 1.00 55.62 N ATOM 3214 HE1 TRP 379 28.202 -6.318 53.407 1.00 56.14 H ATOM 3215 CD2 TRP 379 30.658 -6.514 55.330 1.00 54.97 C ATOM 3216 CE2 TRP 379 29.353 -6.864 55.052 1.00 55.83 C ATOM 3217 CE3 TRP 379 31.338 -7.204 56.341 1.00 54.63 C ATOM 3218 CZ3 TRP 379 30.650 -8.075 57.117 1.00 55.32 C ATOM 3219 CH2 TRP 379 29.293 -8.271 56.914 1.00 57.38 H ATOM 3220 CZ2 TRP 379 28.598 -7.561 55.968 1.00 58.25 C ATOM 3223 H SER 380 33.651 -4.072 52.907 1.00 54.95 H ATOM 3222 N SER 380 33.839 -4.974 52.750 1.00 55.24 N ATOM 3221 CA SER 380 34.302 -5.408 51.444 1.00 56.34 C ATOM 3224 CB SER 380 35.834 -5.554 51.381 1.00 58.08 C ATOM 3225 C SER 380 33.613 -6.703 50.964 1.00 56.59 C ATOM 3226 O SER 380 34.243 -7.619 50.436 1.00 58.95 O ATOM 3227 OG SER 380 36.442 -4.290 51.575 1.00 56.51 O ATOM 3230 H GLU 381 31.829 -6.018 51.552 1.00 0.00 H ATOM 3229 N GLU 381 32.272 -6.750 51.147 1.00 0.03 N ATOM 3228 CA GLU 381 31.449 -7.955 50.698 1.00 0.09 C ATOM 3231 CB GLU 381 30.919 -8.717 51.938 1.00 0.06 C ATOM 3232 C GLU 381 30.206 -7.544 49.931 1.00 0.21 C ATOM 3233 O GLU 381 29.405 -6.754 50.471 1.00 0.35 O ATOM 3234 OXT GLU 381 30.014 -8.033 48.799 1.00 0.25 O ATOM 3235 CG GLU 381 29.447 -8.470 51.698 1.00 0.08 C ATOM 3236 CD GLU 381 28.471 -9.481 52.242 1.00 0.10 C ATOM 3237 OE1 GLU 381 27.499 -8.940 52.742 1.00 0.09 O ATOM 3238 OE2 GLU 381 28.678 -10.744 52.239 1.00 0.20 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.98 43.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 76.92 68.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.44 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.64 70.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.57 0.0 2 7.7 26 ARMSSC1 RELIABLE SIDE CHAINS . 50.57 0.0 2 8.0 25 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC1 SURFACE . . . . . . . . 50.62 0.0 1 4.3 23 ARMSSC1 BURIED . . . . . . . . 50.52 0.0 1 33.3 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.40 0.0 2 9.1 22 ARMSSC2 RELIABLE SIDE CHAINS . 74.40 0.0 2 12.5 16 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC2 SURFACE . . . . . . . . 72.70 0.0 1 5.0 20 ARMSSC2 BURIED . . . . . . . . 76.07 0.0 1 50.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.03 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.03 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3880 CRMSCA SECONDARY STRUCTURE . . 9.88 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.21 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.00 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.07 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.66 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.30 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.70 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.00 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.27 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.19 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.03 120 100.0 120 CRMSSC BURIED . . . . . . . . 12.69 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.53 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.92 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.69 224 100.0 224 CRMSALL BURIED . . . . . . . . 11.24 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 45.419 0.690 0.720 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 48.448 0.738 0.773 11 100.0 11 ERRCA SURFACE . . . . . . . . 45.074 0.688 0.716 26 100.0 26 ERRCA BURIED . . . . . . . . 47.212 0.699 0.741 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 44.694 0.686 0.716 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 47.553 0.737 0.772 54 100.0 54 ERRMC SURFACE . . . . . . . . 44.371 0.682 0.711 129 100.0 129 ERRMC BURIED . . . . . . . . 46.501 0.706 0.747 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 43.634 0.676 0.704 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 43.220 0.673 0.698 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 47.119 0.718 0.755 41 100.0 41 ERRSC SURFACE . . . . . . . . 43.623 0.678 0.703 120 100.0 120 ERRSC BURIED . . . . . . . . 43.762 0.660 0.714 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 44.158 0.681 0.710 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 47.372 0.728 0.764 85 100.0 85 ERRALL SURFACE . . . . . . . . 43.932 0.679 0.706 224 100.0 224 ERRALL BURIED . . . . . . . . 45.841 0.694 0.738 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 1 1 11 31 31 DISTCA CA (P) 3.23 3.23 3.23 3.23 35.48 31 DISTCA CA (RMS) 0.75 0.75 0.75 0.75 7.33 DISTCA ALL (N) 1 1 5 17 86 254 254 DISTALL ALL (P) 0.39 0.39 1.97 6.69 33.86 254 DISTALL ALL (RMS) 0.75 0.75 2.27 3.77 7.45 DISTALL END of the results output