####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS403_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS403_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 352 - 368 4.97 12.74 LONGEST_CONTINUOUS_SEGMENT: 17 360 - 376 4.77 13.47 LCS_AVERAGE: 52.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 358 - 365 1.91 17.13 LONGEST_CONTINUOUS_SEGMENT: 8 367 - 374 1.43 15.70 LCS_AVERAGE: 23.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.19 21.36 LONGEST_CONTINUOUS_SEGMENT: 6 368 - 373 1.00 16.44 LCS_AVERAGE: 16.34 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 7 14 6 6 6 6 6 7 7 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT A 352 A 352 6 7 17 6 6 6 6 6 7 7 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT E 353 E 353 6 7 17 6 6 6 6 6 7 7 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT E 354 E 354 6 7 17 6 6 6 6 6 7 7 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT L 355 L 355 6 7 17 6 6 6 6 6 7 7 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT G 356 G 356 6 7 17 6 6 6 6 6 7 8 10 10 11 13 16 17 18 18 20 21 21 22 25 LCS_GDT N 357 N 357 3 7 17 3 3 4 5 5 7 8 10 10 12 13 14 16 17 18 20 21 21 22 25 LCS_GDT I 358 I 358 5 8 17 3 4 5 6 7 8 8 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT I 359 I 359 5 8 17 3 4 5 6 7 8 8 10 10 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT V 360 V 360 5 8 17 3 4 5 6 7 8 8 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT A 361 A 361 5 8 17 3 4 5 6 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT W 362 W 362 5 8 17 4 4 5 8 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT N 363 N 363 5 8 17 4 4 5 6 7 9 11 12 12 12 13 15 17 18 18 20 21 21 22 25 LCS_GDT P 364 P 364 5 8 17 4 4 5 5 7 8 9 10 11 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT N 365 N 365 5 8 17 4 4 5 5 7 8 8 9 10 12 12 14 17 18 18 20 21 21 22 25 LCS_GDT L 366 L 366 5 5 17 3 3 5 5 5 7 10 12 12 12 13 15 16 17 17 18 20 21 21 25 LCS_GDT W 367 W 367 5 8 17 3 4 7 8 10 10 11 12 12 12 13 15 16 17 18 20 21 21 22 25 LCS_GDT K 368 K 368 6 8 17 3 4 7 7 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT K 369 K 369 6 8 17 3 4 7 8 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT G 370 G 370 6 8 17 3 4 7 8 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT T 371 T 371 6 8 17 3 4 7 8 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 LCS_GDT N 372 N 372 6 8 17 3 3 7 8 10 10 11 12 12 12 13 15 16 16 17 18 21 21 22 25 LCS_GDT G 373 G 373 6 8 17 3 4 7 8 10 10 11 12 12 12 13 15 16 16 16 17 18 19 20 25 LCS_GDT Y 374 Y 374 4 8 17 3 4 5 8 10 10 11 12 12 12 13 15 16 16 16 17 18 19 22 25 LCS_GDT P 375 P 375 4 7 17 3 4 5 5 6 7 8 10 11 12 12 15 16 16 16 17 18 19 22 25 LCS_GDT I 376 I 376 4 7 17 3 4 5 5 6 7 8 10 10 10 11 15 16 16 16 17 18 19 22 25 LCS_GDT F 377 F 377 4 7 13 3 4 4 5 6 7 8 10 10 10 10 11 12 13 16 16 17 18 21 25 LCS_GDT Q 378 Q 378 4 7 13 4 4 5 5 6 7 8 10 10 10 10 11 12 13 13 15 15 16 18 23 LCS_GDT W 379 W 379 4 7 13 4 4 4 4 6 7 8 10 10 10 10 11 12 13 13 15 15 18 19 23 LCS_GDT S 380 S 380 4 5 13 4 4 4 4 5 6 6 10 10 10 10 11 12 13 13 14 14 16 19 20 LCS_GDT E 381 E 381 4 5 13 4 4 4 4 5 6 6 10 10 10 10 11 12 13 13 14 15 18 19 20 LCS_AVERAGE LCS_A: 30.80 ( 16.34 23.62 52.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 7 8 10 10 11 12 12 12 14 16 17 18 18 20 21 21 22 25 GDT PERCENT_AT 19.35 19.35 22.58 25.81 32.26 32.26 35.48 38.71 38.71 38.71 45.16 51.61 54.84 58.06 58.06 64.52 67.74 67.74 70.97 80.65 GDT RMS_LOCAL 0.19 0.19 1.15 1.66 1.88 1.88 2.20 2.65 2.65 2.65 4.02 4.34 4.90 5.02 5.02 5.45 5.88 5.81 6.43 7.45 GDT RMS_ALL_AT 21.36 21.36 16.34 15.13 14.76 14.76 14.71 14.09 14.09 14.09 12.67 12.62 11.91 11.96 11.96 11.70 11.25 11.36 10.69 9.44 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 27.450 0 0.554 0.766 28.235 0.000 0.000 LGA A 352 A 352 22.098 0 0.030 0.043 24.125 0.000 0.000 LGA E 353 E 353 19.504 0 0.052 0.507 21.935 0.000 0.000 LGA E 354 E 354 22.047 0 0.062 1.572 29.571 0.000 0.000 LGA L 355 L 355 20.677 0 0.068 1.333 25.939 0.000 0.000 LGA G 356 G 356 15.794 0 0.324 0.324 17.525 0.000 0.000 LGA N 357 N 357 14.592 0 0.170 0.799 18.476 0.000 0.000 LGA I 358 I 358 11.401 0 0.608 0.679 15.586 1.190 0.595 LGA I 359 I 359 11.411 0 0.040 1.161 16.148 1.071 0.536 LGA V 360 V 360 6.982 0 0.523 0.597 9.920 18.452 13.946 LGA A 361 A 361 2.694 0 0.366 0.378 4.703 56.071 51.143 LGA W 362 W 362 2.067 0 0.056 0.945 4.625 67.262 49.490 LGA N 363 N 363 3.240 0 0.083 0.829 5.128 48.571 43.869 LGA P 364 P 364 8.263 0 0.081 0.117 11.138 5.595 6.871 LGA N 365 N 365 10.566 0 0.736 0.851 15.324 2.500 1.250 LGA L 366 L 366 4.902 0 0.580 1.360 7.087 35.357 29.107 LGA W 367 W 367 1.489 0 0.478 1.255 12.943 79.405 27.177 LGA K 368 K 368 2.200 0 0.149 1.152 12.423 75.119 40.635 LGA K 369 K 369 2.003 0 0.597 0.822 5.025 67.024 57.619 LGA G 370 G 370 2.540 0 0.148 0.148 2.540 64.881 64.881 LGA T 371 T 371 2.043 0 0.390 0.889 5.343 66.786 57.211 LGA N 372 N 372 2.215 0 0.693 0.830 4.951 59.405 48.452 LGA G 373 G 373 2.651 0 0.682 0.682 4.780 54.643 54.643 LGA Y 374 Y 374 2.064 0 0.078 1.254 5.203 51.071 44.246 LGA P 375 P 375 7.043 0 0.314 0.500 8.238 14.881 13.265 LGA I 376 I 376 10.201 0 0.167 1.125 14.337 0.714 0.536 LGA F 377 F 377 16.705 0 0.022 0.959 20.547 0.000 0.000 LGA Q 378 Q 378 23.090 0 0.664 1.086 29.347 0.000 0.000 LGA W 379 W 379 24.415 0 0.457 1.158 27.014 0.000 0.000 LGA S 380 S 380 22.891 0 0.137 0.581 23.086 0.000 0.000 LGA E 381 E 381 22.345 2 0.013 1.048 24.534 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 123 99.19 254 252 99.21 31 SUMMARY(RMSD_GDC): 8.793 8.662 10.169 24.839 19.531 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.65 37.097 33.664 0.437 LGA_LOCAL RMSD: 2.645 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.092 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.793 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.426387 * X + 0.503640 * Y + 0.751359 * Z + 7.813565 Y_new = -0.904536 * X + -0.234566 * Y + -0.356082 * Z + 108.644203 Z_new = -0.003094 * X + -0.831460 * Y + 0.555576 * Z + 61.376976 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.011293 0.003094 -0.981737 [DEG: -115.2386 0.1773 -56.2494 ] ZXZ: 1.128232 0.981740 -3.137872 [DEG: 64.6429 56.2496 -179.7868 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS403_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS403_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.65 33.664 8.79 REMARK ---------------------------------------------------------- MOLECULE T0537TS403_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1BHE 1WRG ATOM 2529 N SER 351 27.049 17.502 65.070 1.00 0.00 N ATOM 2530 CA SER 351 27.282 16.294 65.855 1.00 0.00 C ATOM 2531 CB SER 351 27.020 16.608 67.330 1.00 0.00 C ATOM 2532 OG SER 351 27.450 15.592 68.227 1.00 0.00 O ATOM 2533 C SER 351 26.410 15.136 65.364 1.00 0.00 C ATOM 2534 O SER 351 26.925 14.068 65.016 1.00 0.00 O ATOM 2535 N ALA 352 25.092 15.351 65.246 1.00 0.00 N ATOM 2536 CA ALA 352 24.178 14.325 64.753 1.00 0.00 C ATOM 2537 CB ALA 352 22.748 14.832 64.857 1.00 0.00 C ATOM 2538 C ALA 352 24.426 13.909 63.303 1.00 0.00 C ATOM 2539 O ALA 352 24.333 12.727 62.963 1.00 0.00 O ATOM 2540 N GLU 353 24.778 14.871 62.444 1.00 0.00 N ATOM 2541 CA GLU 353 25.076 14.628 61.037 1.00 0.00 C ATOM 2542 CB GLU 353 25.161 15.984 60.335 1.00 0.00 C ATOM 2543 CG GLU 353 24.980 16.026 58.823 1.00 0.00 C ATOM 2544 CD GLU 353 24.968 17.449 58.274 1.00 0.00 C ATOM 2545 OE1 GLU 353 23.932 18.115 58.359 1.00 0.00 O ATOM 2546 OE2 GLU 353 26.002 17.900 57.785 1.00 0.00 O ATOM 2547 C GLU 353 26.373 13.836 60.861 1.00 0.00 C ATOM 2548 O GLU 353 26.471 12.994 59.968 1.00 0.00 O ATOM 2549 N GLU 354 27.380 14.090 61.709 1.00 0.00 N ATOM 2550 CA GLU 354 28.632 13.342 61.683 1.00 0.00 C ATOM 2551 CB GLU 354 29.711 14.146 62.424 1.00 0.00 C ATOM 2552 CG GLU 354 31.193 13.831 62.149 1.00 0.00 C ATOM 2553 CD GLU 354 31.781 12.570 62.778 1.00 0.00 C ATOM 2554 OE1 GLU 354 31.580 12.343 63.973 1.00 0.00 O ATOM 2555 OE2 GLU 354 32.475 11.836 62.076 1.00 0.00 O ATOM 2556 C GLU 354 28.466 11.952 62.294 1.00 0.00 C ATOM 2557 O GLU 354 29.162 11.025 61.881 1.00 0.00 O ATOM 2558 N LEU 355 27.598 11.791 63.300 1.00 0.00 N ATOM 2559 CA LEU 355 27.319 10.485 63.883 1.00 0.00 C ATOM 2560 CB LEU 355 26.569 10.663 65.206 1.00 0.00 C ATOM 2561 CG LEU 355 26.261 9.455 66.090 1.00 0.00 C ATOM 2562 CD1 LEU 355 27.539 8.812 66.611 1.00 0.00 C ATOM 2563 CD2 LEU 355 25.386 9.881 67.257 1.00 0.00 C ATOM 2564 C LEU 355 26.526 9.589 62.933 1.00 0.00 C ATOM 2565 O LEU 355 26.929 8.458 62.653 1.00 0.00 O ATOM 2566 N GLY 356 25.391 10.081 62.424 1.00 0.00 N ATOM 2567 CA GLY 356 24.539 9.313 61.528 1.00 0.00 C ATOM 2568 C GLY 356 23.937 8.099 62.225 1.00 0.00 C ATOM 2569 O GLY 356 23.088 8.229 63.107 1.00 0.00 O ATOM 2570 N ASN 357 24.366 6.910 61.787 1.00 0.00 N ATOM 2571 CA ASN 357 24.032 5.603 62.361 1.00 0.00 C ATOM 2572 CB ASN 357 24.734 5.440 63.718 1.00 0.00 C ATOM 2573 CG ASN 357 25.113 4.001 64.051 1.00 0.00 C ATOM 2574 OD1 ASN 357 25.799 3.320 63.293 1.00 0.00 O ATOM 2575 ND2 ASN 357 24.717 3.479 65.202 1.00 0.00 N ATOM 2576 C ASN 357 22.567 5.152 62.446 1.00 0.00 C ATOM 2577 O ASN 357 22.295 3.960 62.593 1.00 0.00 O ATOM 2578 N ILE 358 21.585 6.056 62.366 1.00 0.00 N ATOM 2579 CA ILE 358 20.171 5.706 62.342 1.00 0.00 C ATOM 2580 CB ILE 358 19.350 6.804 63.077 1.00 0.00 C ATOM 2581 CG2 ILE 358 17.866 6.441 63.119 1.00 0.00 C ATOM 2582 CG1 ILE 358 19.866 7.040 64.497 1.00 0.00 C ATOM 2583 CD1 ILE 358 19.091 8.118 65.275 1.00 0.00 C ATOM 2584 C ILE 358 19.753 5.592 60.877 1.00 0.00 C ATOM 2585 O ILE 358 20.171 6.406 60.046 1.00 0.00 O ATOM 2586 N ILE 359 18.907 4.595 60.579 1.00 0.00 N ATOM 2587 CA ILE 359 18.425 4.269 59.234 1.00 0.00 C ATOM 2588 CB ILE 359 17.265 3.221 59.333 1.00 0.00 C ATOM 2589 CG2 ILE 359 16.110 3.716 60.208 1.00 0.00 C ATOM 2590 CG1 ILE 359 16.782 2.749 57.959 1.00 0.00 C ATOM 2591 CD1 ILE 359 15.642 1.718 58.014 1.00 0.00 C ATOM 2592 C ILE 359 18.078 5.455 58.327 1.00 0.00 C ATOM 2593 O ILE 359 18.564 5.526 57.197 1.00 0.00 O ATOM 2594 N VAL 360 17.254 6.400 58.792 1.00 0.00 N ATOM 2595 CA VAL 360 17.056 7.654 58.083 1.00 0.00 C ATOM 2596 CB VAL 360 15.605 7.836 57.537 1.00 0.00 C ATOM 2597 CG1 VAL 360 15.533 9.056 56.622 1.00 0.00 C ATOM 2598 CG2 VAL 360 15.105 6.622 56.762 1.00 0.00 C ATOM 2599 C VAL 360 17.455 8.771 59.047 1.00 0.00 C ATOM 2600 O VAL 360 16.626 9.459 59.646 1.00 0.00 O ATOM 2601 N ALA 361 18.762 8.858 59.310 1.00 0.00 N ATOM 2602 CA ALA 361 19.340 10.093 59.814 1.00 0.00 C ATOM 2603 CB ALA 361 20.498 9.797 60.762 1.00 0.00 C ATOM 2604 C ALA 361 19.825 10.830 58.569 1.00 0.00 C ATOM 2605 O ALA 361 19.096 11.685 58.069 1.00 0.00 O ATOM 2606 N TRP 362 21.027 10.539 58.039 1.00 0.00 N ATOM 2607 CA TRP 362 21.422 10.781 56.650 1.00 0.00 C ATOM 2608 CB TRP 362 20.505 9.943 55.735 1.00 0.00 C ATOM 2609 CG TRP 362 20.955 9.755 54.290 1.00 0.00 C ATOM 2610 CD2 TRP 362 20.236 10.051 53.166 1.00 0.00 C ATOM 2611 CE2 TRP 362 21.065 9.631 52.172 1.00 0.00 C ATOM 2612 CE3 TRP 362 18.895 10.271 52.952 1.00 0.00 C ATOM 2613 CD1 TRP 362 22.174 9.193 53.967 1.00 0.00 C ATOM 2614 NE1 TRP 362 22.206 9.120 52.652 1.00 0.00 N ATOM 2615 CZ2 TRP 362 20.643 9.399 50.888 1.00 0.00 C ATOM 2616 CZ3 TRP 362 18.445 10.074 51.656 1.00 0.00 C ATOM 2617 CH2 TRP 362 19.299 9.647 50.644 1.00 0.00 H ATOM 2618 C TRP 362 21.581 12.212 56.124 1.00 0.00 C ATOM 2619 O TRP 362 22.489 12.463 55.333 1.00 0.00 O ATOM 2620 N ASN 363 20.769 13.171 56.578 1.00 0.00 N ATOM 2621 CA ASN 363 20.583 14.501 56.008 1.00 0.00 C ATOM 2622 CB ASN 363 21.698 15.505 56.418 1.00 0.00 C ATOM 2623 CG ASN 363 22.872 15.855 55.501 1.00 0.00 C ATOM 2624 OD1 ASN 363 23.335 16.993 55.531 1.00 0.00 O ATOM 2625 ND2 ASN 363 23.464 14.998 54.684 1.00 0.00 N ATOM 2626 C ASN 363 20.138 14.547 54.538 1.00 0.00 C ATOM 2627 O ASN 363 20.948 14.599 53.613 1.00 0.00 O ATOM 2628 N PRO 364 18.819 14.453 54.276 1.00 0.00 N ATOM 2629 CD PRO 364 17.821 13.950 55.219 1.00 0.00 C ATOM 2630 CA PRO 364 18.220 14.628 52.946 1.00 0.00 C ATOM 2631 CB PRO 364 16.781 14.191 53.161 1.00 0.00 C ATOM 2632 CG PRO 364 16.861 13.215 54.305 1.00 0.00 C ATOM 2633 C PRO 364 18.291 16.079 52.469 1.00 0.00 C ATOM 2634 O PRO 364 18.377 16.377 51.278 1.00 0.00 O ATOM 2635 N ASN 365 18.223 16.981 53.446 1.00 0.00 N ATOM 2636 CA ASN 365 18.446 18.407 53.284 1.00 0.00 C ATOM 2637 CB ASN 365 17.117 19.145 53.496 1.00 0.00 C ATOM 2638 CG ASN 365 17.199 20.661 53.369 1.00 0.00 C ATOM 2639 OD1 ASN 365 17.719 21.201 52.396 1.00 0.00 O ATOM 2640 ND2 ASN 365 16.736 21.415 54.354 1.00 0.00 N ATOM 2641 C ASN 365 19.449 18.759 54.386 1.00 0.00 C ATOM 2642 O ASN 365 19.691 17.920 55.261 1.00 0.00 O ATOM 2643 N LEU 366 20.048 19.958 54.388 1.00 0.00 N ATOM 2644 CA LEU 366 21.026 20.365 55.399 1.00 0.00 C ATOM 2645 CB LEU 366 21.481 21.816 55.190 1.00 0.00 C ATOM 2646 CG LEU 366 22.326 22.235 53.985 1.00 0.00 C ATOM 2647 CD1 LEU 366 21.525 22.264 52.689 1.00 0.00 C ATOM 2648 CD2 LEU 366 22.878 23.628 54.233 1.00 0.00 C ATOM 2649 C LEU 366 20.472 20.212 56.814 1.00 0.00 C ATOM 2650 O LEU 366 19.495 20.871 57.181 1.00 0.00 O ATOM 2651 N TRP 367 21.079 19.308 57.601 1.00 0.00 N ATOM 2652 CA TRP 367 20.524 18.812 58.860 1.00 0.00 C ATOM 2653 CB TRP 367 20.423 19.936 59.924 1.00 0.00 C ATOM 2654 CG TRP 367 19.570 19.698 61.170 1.00 0.00 C ATOM 2655 CD2 TRP 367 19.659 18.705 62.113 1.00 0.00 C ATOM 2656 CE2 TRP 367 18.688 19.049 62.994 1.00 0.00 C ATOM 2657 CE3 TRP 367 20.323 17.502 62.187 1.00 0.00 C ATOM 2658 CD1 TRP 367 18.571 20.592 61.504 1.00 0.00 C ATOM 2659 NE1 TRP 367 18.042 20.163 62.632 1.00 0.00 N ATOM 2660 CZ2 TRP 367 18.282 18.251 64.032 1.00 0.00 C ATOM 2661 CZ3 TRP 367 19.946 16.676 63.235 1.00 0.00 C ATOM 2662 CH2 TRP 367 18.950 17.040 64.138 1.00 0.00 H ATOM 2663 C TRP 367 19.232 18.015 58.665 1.00 0.00 C ATOM 2664 O TRP 367 19.251 16.787 58.756 1.00 0.00 O ATOM 2665 N LYS 368 18.115 18.683 58.369 1.00 0.00 N ATOM 2666 CA LYS 368 16.792 18.079 58.246 1.00 0.00 C ATOM 2667 CB LYS 368 16.149 17.851 59.627 1.00 0.00 C ATOM 2668 CG LYS 368 16.343 16.462 60.229 1.00 0.00 C ATOM 2669 CD LYS 368 15.655 15.406 59.367 1.00 0.00 C ATOM 2670 CE LYS 368 15.898 13.992 59.879 1.00 0.00 C ATOM 2671 NZ LYS 368 15.274 13.768 61.170 1.00 0.00 N ATOM 2672 C LYS 368 15.924 19.025 57.422 1.00 0.00 C ATOM 2673 O LYS 368 16.461 19.885 56.721 1.00 0.00 O ATOM 2674 N LYS 369 14.591 18.899 57.433 1.00 0.00 N ATOM 2675 CA LYS 369 13.729 19.920 56.847 1.00 0.00 C ATOM 2676 CB LYS 369 12.271 19.446 56.725 1.00 0.00 C ATOM 2677 CG LYS 369 11.610 18.901 57.994 1.00 0.00 C ATOM 2678 CD LYS 369 10.094 18.807 57.864 1.00 0.00 C ATOM 2679 CE LYS 369 9.640 17.788 56.829 1.00 0.00 C ATOM 2680 NZ LYS 369 8.193 17.794 56.740 1.00 0.00 N ATOM 2681 C LYS 369 13.808 21.250 57.595 1.00 0.00 C ATOM 2682 O LYS 369 14.016 22.302 56.990 1.00 0.00 O ATOM 2683 N GLY 370 13.720 21.192 58.927 1.00 0.00 N ATOM 2684 CA GLY 370 13.658 22.378 59.766 1.00 0.00 C ATOM 2685 C GLY 370 12.210 22.751 60.052 1.00 0.00 C ATOM 2686 O GLY 370 11.298 21.939 59.875 1.00 0.00 O ATOM 2687 N THR 371 11.959 23.993 60.463 1.00 0.00 N ATOM 2688 CA THR 371 10.607 24.448 60.769 1.00 0.00 C ATOM 2689 CB THR 371 10.649 25.350 62.030 1.00 0.00 C ATOM 2690 OG1 THR 371 11.535 24.724 62.955 1.00 0.00 O ATOM 2691 CG2 THR 371 9.280 25.487 62.687 1.00 0.00 C ATOM 2692 C THR 371 10.084 25.184 59.530 1.00 0.00 C ATOM 2693 O THR 371 9.529 26.286 59.577 1.00 0.00 O ATOM 2694 N ASN 372 10.247 24.525 58.379 1.00 0.00 N ATOM 2695 CA ASN 372 10.185 25.152 57.064 1.00 0.00 C ATOM 2696 CB ASN 372 11.389 26.099 56.848 1.00 0.00 C ATOM 2697 CG ASN 372 12.746 25.453 57.117 1.00 0.00 C ATOM 2698 OD1 ASN 372 13.257 25.500 58.235 1.00 0.00 O ATOM 2699 ND2 ASN 372 13.385 24.834 56.136 1.00 0.00 N ATOM 2700 C ASN 372 10.198 24.074 55.985 1.00 0.00 C ATOM 2701 O ASN 372 10.361 22.887 56.279 1.00 0.00 O ATOM 2702 N GLY 373 10.000 24.474 54.727 1.00 0.00 N ATOM 2703 CA GLY 373 10.193 23.580 53.595 1.00 0.00 C ATOM 2704 C GLY 373 11.623 23.675 53.077 1.00 0.00 C ATOM 2705 O GLY 373 12.376 24.573 53.469 1.00 0.00 O ATOM 2706 N TYR 374 12.014 22.754 52.192 1.00 0.00 N ATOM 2707 CA TYR 374 13.350 22.768 51.609 1.00 0.00 C ATOM 2708 CB TYR 374 13.702 21.410 50.963 1.00 0.00 C ATOM 2709 CG TYR 374 12.897 20.962 49.746 1.00 0.00 C ATOM 2710 CD1 TYR 374 11.584 20.551 49.879 1.00 0.00 C ATOM 2711 CE1 TYR 374 10.889 20.093 48.779 1.00 0.00 C ATOM 2712 CD2 TYR 374 13.513 20.921 48.510 1.00 0.00 C ATOM 2713 CE2 TYR 374 12.824 20.459 47.408 1.00 0.00 C ATOM 2714 CZ TYR 374 11.515 20.048 47.551 1.00 0.00 C ATOM 2715 OH TYR 374 10.817 19.586 46.454 1.00 0.00 H ATOM 2716 C TYR 374 13.551 23.944 50.644 1.00 0.00 C ATOM 2717 O TYR 374 12.627 24.266 49.891 1.00 0.00 O ATOM 2718 N PRO 375 14.705 24.634 50.636 1.00 0.00 N ATOM 2719 CD PRO 375 15.860 24.330 51.478 1.00 0.00 C ATOM 2720 CA PRO 375 14.943 25.842 49.845 1.00 0.00 C ATOM 2721 CB PRO 375 16.304 26.306 50.346 1.00 0.00 C ATOM 2722 CG PRO 375 16.994 25.028 50.756 1.00 0.00 C ATOM 2723 C PRO 375 14.854 25.754 48.319 1.00 0.00 C ATOM 2724 O PRO 375 15.848 25.621 47.601 1.00 0.00 O ATOM 2725 N ILE 376 13.617 25.815 47.822 1.00 0.00 N ATOM 2726 CA ILE 376 13.341 25.955 46.402 1.00 0.00 C ATOM 2727 CB ILE 376 13.052 24.565 45.753 1.00 0.00 C ATOM 2728 CG2 ILE 376 11.819 23.884 46.351 1.00 0.00 C ATOM 2729 CG1 ILE 376 12.965 24.665 44.231 1.00 0.00 C ATOM 2730 CD1 ILE 376 12.681 23.326 43.529 1.00 0.00 C ATOM 2731 C ILE 376 12.189 26.947 46.239 1.00 0.00 C ATOM 2732 O ILE 376 11.239 26.946 47.028 1.00 0.00 O ATOM 2733 N PHE 377 12.281 27.834 45.244 1.00 0.00 N ATOM 2734 CA PHE 377 11.266 28.844 44.986 1.00 0.00 C ATOM 2735 CB PHE 377 11.457 30.034 45.943 1.00 0.00 C ATOM 2736 CG PHE 377 10.292 31.018 45.998 1.00 0.00 C ATOM 2737 CD1 PHE 377 9.012 30.574 46.283 1.00 0.00 C ATOM 2738 CD2 PHE 377 10.521 32.361 45.767 1.00 0.00 C ATOM 2739 CE1 PHE 377 7.968 31.475 46.329 1.00 0.00 C ATOM 2740 CE2 PHE 377 9.471 33.255 45.817 1.00 0.00 C ATOM 2741 CZ PHE 377 8.195 32.814 46.096 1.00 0.00 C ATOM 2742 C PHE 377 11.412 29.296 43.537 1.00 0.00 C ATOM 2743 O PHE 377 12.475 29.138 42.931 1.00 0.00 O ATOM 2744 N GLN 378 10.337 29.847 42.971 1.00 0.00 N ATOM 2745 CA GLN 378 10.334 30.366 41.614 1.00 0.00 C ATOM 2746 CB GLN 378 9.331 29.567 40.766 1.00 0.00 C ATOM 2747 CG GLN 378 9.134 29.983 39.302 1.00 0.00 C ATOM 2748 CD GLN 378 10.403 30.003 38.458 1.00 0.00 C ATOM 2749 OE1 GLN 378 11.199 30.937 38.527 1.00 0.00 O ATOM 2750 NE2 GLN 378 10.645 28.996 37.632 1.00 0.00 N ATOM 2751 C GLN 378 9.964 31.844 41.682 1.00 0.00 C ATOM 2752 O GLN 378 9.219 32.259 42.575 1.00 0.00 O ATOM 2753 N TRP 379 10.474 32.656 40.752 1.00 0.00 N ATOM 2754 CA TRP 379 10.253 34.094 40.774 1.00 0.00 C ATOM 2755 CB TRP 379 11.311 34.777 39.896 1.00 0.00 C ATOM 2756 CG TRP 379 11.330 36.303 39.941 1.00 0.00 C ATOM 2757 CD2 TRP 379 11.426 37.147 38.869 1.00 0.00 C ATOM 2758 CE2 TRP 379 11.424 38.372 39.459 1.00 0.00 C ATOM 2759 CE3 TRP 379 11.856 36.963 37.574 1.00 0.00 C ATOM 2760 CD1 TRP 379 11.264 37.014 41.124 1.00 0.00 C ATOM 2761 NE1 TRP 379 11.332 38.287 40.792 1.00 0.00 N ATOM 2762 CZ2 TRP 379 11.836 39.517 38.825 1.00 0.00 C ATOM 2763 CZ3 TRP 379 12.252 38.106 36.897 1.00 0.00 C ATOM 2764 CH2 TRP 379 12.243 39.357 37.508 1.00 0.00 H ATOM 2765 C TRP 379 8.826 34.461 40.362 1.00 0.00 C ATOM 2766 O TRP 379 8.486 34.588 39.183 1.00 0.00 O ATOM 2767 N SER 380 7.971 34.564 41.377 1.00 0.00 N ATOM 2768 CA SER 380 6.616 35.062 41.216 1.00 0.00 C ATOM 2769 CB SER 380 5.645 33.899 41.427 1.00 0.00 C ATOM 2770 OG SER 380 5.885 33.204 42.643 1.00 0.00 O ATOM 2771 C SER 380 6.327 36.221 42.170 1.00 0.00 C ATOM 2772 O SER 380 7.195 36.637 42.944 1.00 0.00 O ATOM 2773 N GLU 381 5.119 36.795 42.116 1.00 0.00 N ATOM 2774 CA GLU 381 4.734 37.876 43.016 1.00 0.00 C ATOM 2775 CB GLU 381 3.532 38.649 42.462 1.00 0.00 C ATOM 2776 CG GLU 381 3.765 39.521 41.217 1.00 0.00 C ATOM 2777 CD GLU 381 4.168 38.816 39.923 1.00 0.00 C ATOM 2778 OE1 GLU 381 3.733 37.686 39.682 1.00 0.00 O ATOM 2779 OE2 GLU 381 4.928 39.401 39.156 1.00 0.00 O ATOM 2780 C GLU 381 4.402 37.352 44.408 1.00 0.00 C ATOM 2781 1OCT GLU 381 4.494 36.112 44.610 1.00 0.00 O ATOM 2782 2OCT GLU 381 4.053 38.185 45.286 1.00 0.00 O TER 2783 GLU 381 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 252 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.32 40.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 67.59 54.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.06 42.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 84.53 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.36 19.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 103.30 16.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 75.21 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 104.71 17.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 70.56 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.00 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 85.66 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 76.17 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 91.55 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 57.57 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.95 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 69.96 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 57.34 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 78.95 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.43 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 81.43 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 81.43 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.79 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.79 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2836 CRMSCA SECONDARY STRUCTURE . . 8.38 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.83 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.62 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.83 151 99.3 152 CRMSMC SECONDARY STRUCTURE . . 8.44 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.78 128 99.2 129 CRMSMC BURIED . . . . . . . . 9.06 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.65 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.61 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.05 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.69 119 99.2 120 CRMSSC BURIED . . . . . . . . 11.10 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.30 252 99.2 254 CRMSALL SECONDARY STRUCTURE . . 8.72 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.39 222 99.1 224 CRMSALL BURIED . . . . . . . . 9.61 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.540 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.247 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.576 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 8.350 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.561 1.000 0.500 151 99.3 152 ERRMC SECONDARY STRUCTURE . . 8.284 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.507 1.000 0.500 128 99.2 129 ERRMC BURIED . . . . . . . . 8.861 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.028 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.967 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.562 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.027 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 11.041 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.750 1.000 0.500 252 99.2 254 ERRALL SECONDARY STRUCTURE . . 8.416 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.798 1.000 0.500 222 99.1 224 ERRALL BURIED . . . . . . . . 9.399 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 25 31 31 DISTCA CA (P) 0.00 0.00 0.00 3.23 80.65 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.10 7.98 DISTCA ALL (N) 0 0 2 15 148 252 254 DISTALL ALL (P) 0.00 0.00 0.79 5.91 58.27 254 DISTALL ALL (RMS) 0.00 0.00 2.50 4.25 7.74 DISTALL END of the results output