####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS400_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS400_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 358 - 375 4.88 11.24 LCS_AVERAGE: 56.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 365 - 371 1.98 19.20 LONGEST_CONTINUOUS_SEGMENT: 7 368 - 374 1.93 15.52 LCS_AVERAGE: 17.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 352 - 356 0.46 19.66 LCS_AVERAGE: 11.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 17 1 3 4 4 5 6 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT A 352 A 352 5 5 17 4 5 5 5 5 6 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT E 353 E 353 5 5 17 4 5 5 5 5 6 7 8 8 13 15 16 18 19 21 22 25 25 26 26 LCS_GDT E 354 E 354 5 5 17 4 5 5 5 5 6 7 8 8 10 15 16 18 19 21 23 25 25 26 26 LCS_GDT L 355 L 355 5 5 17 4 5 5 5 5 6 7 8 10 13 15 17 18 20 21 23 25 25 26 26 LCS_GDT G 356 G 356 5 5 17 3 5 5 5 5 6 7 8 9 10 13 14 16 18 20 21 22 23 26 26 LCS_GDT N 357 N 357 3 4 17 3 3 3 4 5 6 7 8 10 13 15 17 18 19 21 23 25 25 26 26 LCS_GDT I 358 I 358 3 4 18 3 3 4 4 4 6 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT I 359 I 359 3 4 18 3 3 3 3 4 7 8 8 10 13 15 17 18 20 21 23 25 25 26 26 LCS_GDT V 360 V 360 3 4 18 3 4 4 6 6 7 8 9 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT A 361 A 361 3 4 18 3 4 4 6 6 7 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT W 362 W 362 3 4 18 3 4 4 6 6 8 10 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT N 363 N 363 3 4 18 3 3 4 5 5 6 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT P 364 P 364 3 3 18 3 3 3 4 5 6 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT N 365 N 365 3 7 18 3 3 4 5 6 7 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT L 366 L 366 3 7 18 3 3 4 5 6 9 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT W 367 W 367 3 7 18 3 3 4 5 6 9 9 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT K 368 K 368 4 7 18 3 4 4 5 6 9 9 11 12 13 14 16 18 20 21 23 25 25 26 26 LCS_GDT K 369 K 369 4 7 18 3 4 4 5 6 9 9 11 12 13 14 16 17 20 21 23 25 25 26 26 LCS_GDT G 370 G 370 4 7 18 3 4 4 5 6 7 9 11 12 13 14 16 17 20 21 23 25 25 26 26 LCS_GDT T 371 T 371 4 7 18 3 4 4 5 6 9 9 11 12 13 14 16 17 20 21 23 25 25 26 26 LCS_GDT N 372 N 372 4 7 18 3 4 4 5 6 9 10 11 12 13 14 16 18 20 21 23 25 25 26 26 LCS_GDT G 373 G 373 4 7 18 3 4 4 5 6 9 10 11 12 13 14 16 18 20 21 23 25 25 26 26 LCS_GDT Y 374 Y 374 4 7 18 3 4 4 5 6 9 10 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT P 375 P 375 4 6 18 3 4 4 5 6 9 10 11 12 14 15 17 18 20 21 23 25 25 26 26 LCS_GDT I 376 I 376 4 6 17 3 3 4 5 6 8 10 11 12 14 15 17 18 19 21 23 25 25 26 26 LCS_GDT F 377 F 377 4 6 17 3 3 4 6 6 8 10 10 11 12 13 14 17 18 20 21 21 21 22 24 LCS_GDT Q 378 Q 378 3 6 17 3 4 4 6 6 7 10 10 11 12 12 14 16 18 19 20 20 20 22 22 LCS_GDT W 379 W 379 3 4 17 3 3 3 6 6 8 10 10 11 12 13 14 17 18 19 20 20 20 22 22 LCS_GDT S 380 S 380 3 4 17 3 3 3 3 5 8 10 10 11 12 13 14 17 18 19 20 20 20 22 22 LCS_GDT E 381 E 381 3 4 13 3 3 3 3 4 7 8 10 11 12 12 14 16 18 19 20 20 20 22 22 LCS_AVERAGE LCS_A: 28.41 ( 11.76 17.17 56.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 6 9 10 11 12 14 15 17 18 20 21 23 25 25 26 26 GDT PERCENT_AT 12.90 16.13 16.13 19.35 19.35 29.03 32.26 35.48 38.71 45.16 48.39 54.84 58.06 64.52 67.74 74.19 80.65 80.65 83.87 83.87 GDT RMS_LOCAL 0.20 0.46 0.46 1.18 1.18 2.29 2.62 2.99 3.30 3.64 3.81 4.26 4.50 5.08 5.21 5.77 6.04 6.04 6.27 6.27 GDT RMS_ALL_AT 20.64 19.66 19.66 13.76 13.76 15.14 13.23 15.25 10.01 9.90 9.85 9.64 9.50 10.92 10.77 10.15 10.14 10.14 10.02 10.02 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 23.546 0 0.713 0.639 23.970 0.000 0.000 LGA A 352 A 352 21.034 0 0.614 0.593 23.210 0.000 0.000 LGA E 353 E 353 27.245 0 0.030 0.174 35.878 0.000 0.000 LGA E 354 E 354 28.101 0 0.076 1.336 34.044 0.000 0.000 LGA L 355 L 355 22.586 0 0.538 0.590 24.302 0.000 0.000 LGA G 356 G 356 24.167 0 0.203 0.203 24.286 0.000 0.000 LGA N 357 N 357 25.065 0 0.562 0.708 32.042 0.000 0.000 LGA I 358 I 358 20.612 0 0.619 0.907 22.157 0.000 0.000 LGA I 359 I 359 18.383 0 0.200 0.675 21.027 0.000 0.000 LGA V 360 V 360 15.140 0 0.559 1.337 16.420 0.000 0.000 LGA A 361 A 361 17.009 0 0.142 0.162 19.815 0.000 0.000 LGA W 362 W 362 12.292 0 0.596 0.426 17.479 0.714 0.204 LGA N 363 N 363 8.173 0 0.577 0.885 9.945 8.929 7.202 LGA P 364 P 364 6.154 0 0.686 0.827 9.257 17.619 12.381 LGA N 365 N 365 4.229 0 0.678 0.544 9.332 43.690 25.655 LGA L 366 L 366 2.955 0 0.571 1.436 8.829 60.952 40.119 LGA W 367 W 367 3.357 0 0.153 1.002 10.424 51.786 21.633 LGA K 368 K 368 3.229 0 0.661 0.915 10.382 42.857 27.884 LGA K 369 K 369 2.586 0 0.140 0.857 12.992 61.190 34.444 LGA G 370 G 370 5.427 0 0.612 0.612 5.427 39.167 39.167 LGA T 371 T 371 1.995 0 0.032 1.062 4.135 75.952 66.259 LGA N 372 N 372 2.423 0 0.597 1.445 5.237 53.452 53.750 LGA G 373 G 373 2.314 0 0.026 0.026 2.667 64.881 64.881 LGA Y 374 Y 374 2.762 0 0.194 0.171 6.554 59.167 38.929 LGA P 375 P 375 2.384 0 0.677 0.598 3.955 57.500 59.524 LGA I 376 I 376 3.884 0 0.091 1.303 6.319 32.976 29.762 LGA F 377 F 377 8.258 0 0.106 0.912 11.887 4.524 29.437 LGA Q 378 Q 378 15.727 0 0.451 0.813 20.630 0.000 0.000 LGA W 379 W 379 16.234 0 0.567 1.398 17.330 0.000 0.000 LGA S 380 S 380 17.109 0 0.433 0.450 20.306 0.000 0.000 LGA E 381 E 381 20.560 1 0.108 1.019 21.898 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.267 9.256 9.867 21.786 17.782 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.99 36.290 30.976 0.356 LGA_LOCAL RMSD: 2.994 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.251 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.267 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.098253 * X + 0.854367 * Y + 0.510297 * Z + -47.626602 Y_new = 0.914477 * X + 0.279772 * Y + -0.292336 * Z + -2.006936 Z_new = -0.392529 * X + 0.437932 * Y + -0.808787 * Z + 102.142166 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.677828 0.403380 2.645324 [DEG: 96.1324 23.1119 151.5659 ] ZXZ: 1.050562 2.512883 -0.730780 [DEG: 60.1928 143.9776 -41.8706 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS400_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS400_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.99 30.976 9.27 REMARK ---------------------------------------------------------- MOLECULE T0537TS400_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 22.952 24.106 41.573 1.00 0.00 N ATOM 2530 CA SER 351 22.599 24.272 40.190 1.00 0.00 C ATOM 2531 C SER 351 21.805 25.502 39.813 1.00 0.00 C ATOM 2532 O SER 351 21.747 25.793 38.620 1.00 0.00 O ATOM 2533 CB SER 351 21.742 23.082 39.745 1.00 0.00 C ATOM 2534 OG SER 351 20.634 22.896 40.610 1.00 0.00 O ATOM 2535 N ALA 352 21.132 26.167 40.768 1.00 0.00 N ATOM 2536 CA ALA 352 20.204 27.229 40.417 1.00 0.00 C ATOM 2537 C ALA 352 20.906 28.352 39.699 1.00 0.00 C ATOM 2538 O ALA 352 22.077 28.622 39.982 1.00 0.00 O ATOM 2539 CB ALA 352 19.372 27.744 41.597 1.00 0.00 C ATOM 2540 N GLU 353 20.204 28.992 38.766 1.00 0.00 N ATOM 2541 CA GLU 353 20.826 29.986 37.921 1.00 0.00 C ATOM 2542 C GLU 353 21.354 31.162 38.744 1.00 0.00 C ATOM 2543 O GLU 353 22.519 31.542 38.625 1.00 0.00 O ATOM 2544 CB GLU 353 19.805 30.497 36.869 1.00 0.00 C ATOM 2545 CG GLU 353 20.371 31.550 35.869 1.00 0.00 C ATOM 2546 CD GLU 353 19.449 31.902 34.703 1.00 0.00 C ATOM 2547 OE1 GLU 353 18.327 31.359 34.636 1.00 0.00 O ATOM 2548 OE2 GLU 353 19.915 32.670 33.829 1.00 0.00 O ATOM 2549 N GLU 354 20.501 31.617 39.661 1.00 0.00 N ATOM 2550 CA GLU 354 20.859 32.626 40.623 1.00 0.00 C ATOM 2551 C GLU 354 21.863 32.152 41.662 1.00 0.00 C ATOM 2552 O GLU 354 22.655 32.919 42.206 1.00 0.00 O ATOM 2553 CB GLU 354 19.580 33.158 41.317 1.00 0.00 C ATOM 2554 CG GLU 354 18.714 34.035 40.392 1.00 0.00 C ATOM 2555 CD GLU 354 19.420 35.322 39.927 1.00 0.00 C ATOM 2556 OE1 GLU 354 20.109 35.943 40.768 1.00 0.00 O ATOM 2557 OE2 GLU 354 19.295 35.647 38.729 1.00 0.00 O ATOM 2558 N LEU 355 21.827 30.850 41.924 1.00 0.00 N ATOM 2559 CA LEU 355 22.646 30.268 42.936 1.00 0.00 C ATOM 2560 C LEU 355 23.816 29.447 42.388 1.00 0.00 C ATOM 2561 O LEU 355 23.759 28.223 42.276 1.00 0.00 O ATOM 2562 CB LEU 355 21.895 29.319 43.844 1.00 0.00 C ATOM 2563 CG LEU 355 20.659 29.918 44.479 1.00 0.00 C ATOM 2564 CD1 LEU 355 19.994 28.779 45.226 1.00 0.00 C ATOM 2565 CD2 LEU 355 21.098 31.106 45.329 1.00 0.00 C ATOM 2566 N GLY 356 24.970 30.088 42.217 1.00 0.00 N ATOM 2567 CA GLY 356 26.071 29.416 41.547 1.00 0.00 C ATOM 2568 C GLY 356 26.909 28.503 42.369 1.00 0.00 C ATOM 2569 O GLY 356 27.783 27.820 41.832 1.00 0.00 O ATOM 2570 N ASN 357 26.718 28.557 43.688 1.00 0.00 N ATOM 2571 CA ASN 357 27.567 27.835 44.571 1.00 0.00 C ATOM 2572 C ASN 357 26.880 27.178 45.760 1.00 0.00 C ATOM 2573 O ASN 357 26.033 27.765 46.423 1.00 0.00 O ATOM 2574 CB ASN 357 28.869 28.594 44.995 1.00 0.00 C ATOM 2575 CG ASN 357 29.820 29.023 43.870 1.00 0.00 C ATOM 2576 OD1 ASN 357 30.758 28.316 43.542 1.00 0.00 O ATOM 2577 ND2 ASN 357 29.633 30.225 43.329 1.00 0.00 N ATOM 2578 N ILE 358 27.375 26.005 46.138 1.00 0.00 N ATOM 2579 CA ILE 358 27.110 25.346 47.396 1.00 0.00 C ATOM 2580 C ILE 358 28.477 24.816 47.807 1.00 0.00 C ATOM 2581 O ILE 358 29.006 23.921 47.141 1.00 0.00 O ATOM 2582 CB ILE 358 26.018 24.254 47.188 1.00 0.00 C ATOM 2583 CG1 ILE 358 25.651 23.565 48.503 1.00 0.00 C ATOM 2584 CG2 ILE 358 26.355 23.166 46.174 1.00 0.00 C ATOM 2585 CD1 ILE 358 24.333 22.791 48.508 1.00 0.00 C ATOM 2586 N ILE 359 29.109 25.373 48.845 1.00 0.00 N ATOM 2587 CA ILE 359 30.434 24.905 49.231 1.00 0.00 C ATOM 2588 C ILE 359 30.388 23.813 50.315 1.00 0.00 C ATOM 2589 O ILE 359 31.408 23.183 50.555 1.00 0.00 O ATOM 2590 CB ILE 359 31.381 26.065 49.633 1.00 0.00 C ATOM 2591 CG1 ILE 359 31.581 27.087 48.499 1.00 0.00 C ATOM 2592 CG2 ILE 359 32.757 25.715 50.256 1.00 0.00 C ATOM 2593 CD1 ILE 359 32.320 26.499 47.274 1.00 0.00 C ATOM 2594 N VAL 360 29.234 23.581 50.956 1.00 0.00 N ATOM 2595 CA VAL 360 29.066 22.828 52.198 1.00 0.00 C ATOM 2596 C VAL 360 29.903 21.530 52.354 1.00 0.00 C ATOM 2597 O VAL 360 29.564 20.466 51.845 1.00 0.00 O ATOM 2598 CB VAL 360 27.548 22.466 52.422 1.00 0.00 C ATOM 2599 CG1 VAL 360 26.532 23.583 52.527 1.00 0.00 C ATOM 2600 CG2 VAL 360 26.970 21.688 51.239 1.00 0.00 C ATOM 2601 N ALA 361 30.962 21.592 53.149 1.00 0.00 N ATOM 2602 CA ALA 361 31.742 20.415 53.498 1.00 0.00 C ATOM 2603 C ALA 361 31.274 19.716 54.765 1.00 0.00 C ATOM 2604 O ALA 361 31.938 18.801 55.243 1.00 0.00 O ATOM 2605 CB ALA 361 33.165 20.899 53.837 1.00 0.00 C ATOM 2606 N TRP 362 30.166 20.204 55.337 1.00 0.00 N ATOM 2607 CA TRP 362 29.481 19.787 56.551 1.00 0.00 C ATOM 2608 C TRP 362 29.493 18.300 56.725 1.00 0.00 C ATOM 2609 O TRP 362 28.838 17.552 56.014 1.00 0.00 O ATOM 2610 CB TRP 362 28.036 20.222 56.422 1.00 0.00 C ATOM 2611 CG TRP 362 27.853 21.660 56.430 1.00 0.00 C ATOM 2612 CD1 TRP 362 28.798 22.555 56.777 1.00 0.00 C ATOM 2613 CD2 TRP 362 26.675 22.402 56.086 1.00 0.00 C ATOM 2614 NE1 TRP 362 28.180 23.752 56.968 1.00 0.00 N ATOM 2615 CE2 TRP 362 26.922 23.740 56.438 1.00 0.00 C ATOM 2616 CE3 TRP 362 25.417 22.098 55.513 1.00 0.00 C ATOM 2617 CZ2 TRP 362 26.012 24.768 56.209 1.00 0.00 C ATOM 2618 CZ3 TRP 362 24.499 23.125 55.256 1.00 0.00 C ATOM 2619 CH2 TRP 362 24.798 24.436 55.638 1.00 0.00 H ATOM 2620 N ASN 363 30.295 17.872 57.695 1.00 0.00 N ATOM 2621 CA ASN 363 30.374 16.472 57.954 1.00 0.00 C ATOM 2622 C ASN 363 29.101 15.867 58.519 1.00 0.00 C ATOM 2623 O ASN 363 28.599 14.891 57.975 1.00 0.00 O ATOM 2624 CB ASN 363 31.559 16.121 58.903 1.00 0.00 C ATOM 2625 CG ASN 363 32.954 16.183 58.290 1.00 0.00 C ATOM 2626 OD1 ASN 363 33.163 16.020 57.095 1.00 0.00 O ATOM 2627 ND2 ASN 363 33.971 16.404 59.111 1.00 0.00 N ATOM 2628 N PRO 364 28.532 16.463 59.590 1.00 0.00 N ATOM 2629 CA PRO 364 27.138 16.264 59.858 1.00 0.00 C ATOM 2630 C PRO 364 26.372 17.127 58.927 1.00 0.00 C ATOM 2631 O PRO 364 26.678 18.309 58.853 1.00 0.00 O ATOM 2632 CB PRO 364 27.050 16.505 61.359 1.00 0.00 C ATOM 2633 CG PRO 364 27.979 17.675 61.585 1.00 0.00 C ATOM 2634 CD PRO 364 29.106 17.359 60.592 1.00 0.00 C ATOM 2635 N ASN 365 25.388 16.561 58.263 1.00 0.00 N ATOM 2636 CA ASN 365 24.459 17.354 57.514 1.00 0.00 C ATOM 2637 C ASN 365 23.129 17.309 58.150 1.00 0.00 C ATOM 2638 O ASN 365 22.661 16.234 58.540 1.00 0.00 O ATOM 2639 CB ASN 365 24.257 16.765 56.091 1.00 0.00 C ATOM 2640 CG ASN 365 25.506 16.861 55.237 1.00 0.00 C ATOM 2641 OD1 ASN 365 26.101 17.927 55.178 1.00 0.00 O ATOM 2642 ND2 ASN 365 25.940 15.782 54.602 1.00 0.00 N ATOM 2643 N LEU 366 22.553 18.496 58.310 1.00 0.00 N ATOM 2644 CA LEU 366 21.466 18.657 59.210 1.00 0.00 C ATOM 2645 C LEU 366 20.335 19.473 58.770 1.00 0.00 C ATOM 2646 O LEU 366 20.558 20.593 58.420 1.00 0.00 O ATOM 2647 CB LEU 366 21.890 18.971 60.625 1.00 0.00 C ATOM 2648 CG LEU 366 22.630 17.870 61.391 1.00 0.00 C ATOM 2649 CD1 LEU 366 24.126 18.134 61.250 1.00 0.00 C ATOM 2650 CD2 LEU 366 22.152 17.699 62.845 1.00 0.00 C ATOM 2651 N TRP 367 19.139 18.982 58.997 1.00 0.00 N ATOM 2652 CA TRP 367 17.947 19.764 58.951 1.00 0.00 C ATOM 2653 C TRP 367 16.971 18.944 59.781 1.00 0.00 C ATOM 2654 O TRP 367 16.569 17.858 59.364 1.00 0.00 O ATOM 2655 CB TRP 367 17.404 19.824 57.597 1.00 0.00 C ATOM 2656 CG TRP 367 16.230 20.688 57.509 1.00 0.00 C ATOM 2657 CD1 TRP 367 14.991 20.279 57.172 1.00 0.00 C ATOM 2658 CD2 TRP 367 16.183 22.138 57.611 1.00 0.00 C ATOM 2659 NE1 TRP 367 14.242 21.399 56.937 1.00 0.00 N ATOM 2660 CE2 TRP 367 15.009 22.546 56.945 1.00 0.00 C ATOM 2661 CE3 TRP 367 17.100 23.151 57.984 1.00 0.00 C ATOM 2662 CZ2 TRP 367 14.810 23.861 56.517 1.00 0.00 C ATOM 2663 CZ3 TRP 367 16.909 24.469 57.536 1.00 0.00 C ATOM 2664 CH2 TRP 367 15.793 24.836 56.785 1.00 0.00 H ATOM 2665 N LYS 368 16.605 19.441 60.954 1.00 0.00 N ATOM 2666 CA LYS 368 15.449 18.939 61.679 1.00 0.00 C ATOM 2667 C LYS 368 14.272 19.892 61.495 1.00 0.00 C ATOM 2668 O LYS 368 13.265 19.700 62.165 1.00 0.00 O ATOM 2669 CB LYS 368 15.838 18.896 63.164 1.00 0.00 C ATOM 2670 CG LYS 368 16.905 17.848 63.487 1.00 0.00 C ATOM 2671 CD LYS 368 17.224 17.857 64.983 1.00 0.00 C ATOM 2672 CE LYS 368 18.244 16.803 65.377 1.00 0.00 C ATOM 2673 NZ LYS 368 18.515 16.886 66.829 1.00 0.00 N ATOM 2674 N LYS 369 14.409 20.942 60.670 1.00 0.00 N ATOM 2675 CA LYS 369 13.449 22.037 60.633 1.00 0.00 C ATOM 2676 C LYS 369 12.009 21.560 60.391 1.00 0.00 C ATOM 2677 O LYS 369 11.703 20.998 59.338 1.00 0.00 O ATOM 2678 CB LYS 369 13.823 23.166 59.731 1.00 0.00 C ATOM 2679 CG LYS 369 12.875 24.354 59.680 1.00 0.00 C ATOM 2680 CD LYS 369 13.428 25.388 58.740 1.00 0.00 C ATOM 2681 CE LYS 369 12.833 26.740 58.854 1.00 0.00 C ATOM 2682 NZ LYS 369 13.299 27.577 57.707 1.00 0.00 N ATOM 2683 N GLY 370 11.144 21.878 61.350 1.00 0.00 N ATOM 2684 CA GLY 370 9.745 21.545 61.256 1.00 0.00 C ATOM 2685 C GLY 370 8.985 22.648 60.550 1.00 0.00 C ATOM 2686 O GLY 370 8.125 22.361 59.716 1.00 0.00 O ATOM 2687 N THR 371 9.362 23.907 60.791 1.00 0.00 N ATOM 2688 CA THR 371 8.676 25.033 60.198 1.00 0.00 C ATOM 2689 C THR 371 8.872 25.167 58.703 1.00 0.00 C ATOM 2690 O THR 371 8.024 25.689 57.992 1.00 0.00 O ATOM 2691 CB THR 371 9.164 26.358 60.844 1.00 0.00 C ATOM 2692 OG1 THR 371 9.077 26.242 62.252 1.00 0.00 O ATOM 2693 CG2 THR 371 8.382 27.615 60.402 1.00 0.00 C ATOM 2694 N ASN 372 10.047 24.767 58.266 1.00 0.00 N ATOM 2695 CA ASN 372 10.389 24.745 56.882 1.00 0.00 C ATOM 2696 C ASN 372 11.056 23.469 56.417 1.00 0.00 C ATOM 2697 O ASN 372 11.837 22.906 57.150 1.00 0.00 O ATOM 2698 CB ASN 372 10.935 26.034 56.180 1.00 0.00 C ATOM 2699 CG ASN 372 10.298 27.427 56.350 1.00 0.00 C ATOM 2700 OD1 ASN 372 10.027 28.121 55.385 1.00 0.00 O ATOM 2701 ND2 ASN 372 10.291 28.005 57.547 1.00 0.00 N ATOM 2702 N GLY 373 10.837 23.061 55.165 1.00 0.00 N ATOM 2703 CA GLY 373 11.161 21.698 54.787 1.00 0.00 C ATOM 2704 C GLY 373 12.581 21.478 54.327 1.00 0.00 C ATOM 2705 O GLY 373 12.986 20.327 54.295 1.00 0.00 O ATOM 2706 N TYR 374 13.321 22.554 54.023 1.00 0.00 N ATOM 2707 CA TYR 374 14.687 22.529 53.496 1.00 0.00 C ATOM 2708 C TYR 374 15.616 21.392 53.826 1.00 0.00 C ATOM 2709 O TYR 374 16.306 21.522 54.795 1.00 0.00 O ATOM 2710 CB TYR 374 15.447 23.854 53.361 1.00 0.00 C ATOM 2711 CG TYR 374 14.730 24.883 52.549 1.00 0.00 C ATOM 2712 CD1 TYR 374 14.033 25.902 53.212 1.00 0.00 C ATOM 2713 CD2 TYR 374 14.706 24.801 51.141 1.00 0.00 C ATOM 2714 CE1 TYR 374 13.333 26.851 52.465 1.00 0.00 C ATOM 2715 CE2 TYR 374 14.041 25.795 50.388 1.00 0.00 C ATOM 2716 CZ TYR 374 13.369 26.831 51.060 1.00 0.00 C ATOM 2717 OH TYR 374 12.805 27.867 50.379 1.00 0.00 H ATOM 2718 N PRO 375 15.799 20.326 53.078 1.00 0.00 N ATOM 2719 CA PRO 375 16.869 19.424 53.485 1.00 0.00 C ATOM 2720 C PRO 375 18.265 19.814 53.001 1.00 0.00 C ATOM 2721 O PRO 375 19.259 19.235 53.442 1.00 0.00 O ATOM 2722 CB PRO 375 16.447 18.127 52.761 1.00 0.00 C ATOM 2723 CG PRO 375 15.671 18.566 51.506 1.00 0.00 C ATOM 2724 CD PRO 375 15.006 19.867 51.927 1.00 0.00 C ATOM 2725 N ILE 376 18.318 20.827 52.137 1.00 0.00 N ATOM 2726 CA ILE 376 19.471 21.313 51.403 1.00 0.00 C ATOM 2727 C ILE 376 19.848 20.287 50.318 1.00 0.00 C ATOM 2728 O ILE 376 19.451 19.122 50.352 1.00 0.00 O ATOM 2729 CB ILE 376 20.800 21.691 52.154 1.00 0.00 C ATOM 2730 CG1 ILE 376 20.480 22.676 53.154 1.00 0.00 C ATOM 2731 CG2 ILE 376 22.001 22.307 51.403 1.00 0.00 C ATOM 2732 CD1 ILE 376 19.805 23.866 52.706 1.00 0.00 C ATOM 2733 N PHE 377 20.709 20.739 49.399 1.00 0.00 N ATOM 2734 CA PHE 377 21.669 19.969 48.613 1.00 0.00 C ATOM 2735 C PHE 377 21.065 19.623 47.295 1.00 0.00 C ATOM 2736 O PHE 377 19.970 19.070 47.273 1.00 0.00 O ATOM 2737 CB PHE 377 22.228 18.677 49.285 1.00 0.00 C ATOM 2738 CG PHE 377 23.049 18.838 50.549 1.00 0.00 C ATOM 2739 CD1 PHE 377 22.433 18.769 51.817 1.00 0.00 C ATOM 2740 CD2 PHE 377 24.443 18.997 50.468 1.00 0.00 C ATOM 2741 CE1 PHE 377 23.177 19.033 52.983 1.00 0.00 C ATOM 2742 CE2 PHE 377 25.189 19.124 51.647 1.00 0.00 C ATOM 2743 CZ PHE 377 24.559 19.258 52.883 1.00 0.00 C ATOM 2744 N GLN 378 21.819 19.914 46.231 1.00 0.00 N ATOM 2745 CA GLN 378 21.523 19.543 44.855 1.00 0.00 C ATOM 2746 C GLN 378 20.068 19.840 44.535 1.00 0.00 C ATOM 2747 O GLN 378 19.269 18.950 44.265 1.00 0.00 O ATOM 2748 CB GLN 378 21.815 18.007 44.717 1.00 0.00 C ATOM 2749 CG GLN 378 23.294 17.560 44.835 1.00 0.00 C ATOM 2750 CD GLN 378 24.225 18.076 43.740 1.00 0.00 C ATOM 2751 OE1 GLN 378 24.365 17.474 42.686 1.00 0.00 O ATOM 2752 NE2 GLN 378 24.963 19.148 43.991 1.00 0.00 N ATOM 2753 N TRP 379 19.728 21.110 44.751 1.00 0.00 N ATOM 2754 CA TRP 379 18.344 21.460 44.716 1.00 0.00 C ATOM 2755 C TRP 379 17.873 21.503 43.278 1.00 0.00 C ATOM 2756 O TRP 379 18.358 22.315 42.499 1.00 0.00 O ATOM 2757 CB TRP 379 18.072 22.858 45.313 1.00 0.00 C ATOM 2758 CG TRP 379 16.624 23.280 45.310 1.00 0.00 C ATOM 2759 CD1 TRP 379 16.049 24.098 44.404 1.00 0.00 C ATOM 2760 CD2 TRP 379 15.550 22.846 46.198 1.00 0.00 C ATOM 2761 NE1 TRP 379 14.698 24.206 44.663 1.00 0.00 N ATOM 2762 CE2 TRP 379 14.326 23.438 45.744 1.00 0.00 C ATOM 2763 CE3 TRP 379 15.474 21.965 47.298 1.00 0.00 C ATOM 2764 CZ2 TRP 379 13.094 23.181 46.370 1.00 0.00 C ATOM 2765 CZ3 TRP 379 14.241 21.717 47.945 1.00 0.00 C ATOM 2766 CH2 TRP 379 13.057 22.308 47.479 1.00 0.00 H ATOM 2767 N SER 380 16.915 20.631 42.989 1.00 0.00 N ATOM 2768 CA SER 380 16.318 20.447 41.690 1.00 0.00 C ATOM 2769 C SER 380 17.357 20.206 40.615 1.00 0.00 C ATOM 2770 O SER 380 17.351 20.862 39.570 1.00 0.00 O ATOM 2771 CB SER 380 15.463 21.688 41.332 1.00 0.00 C ATOM 2772 OG SER 380 14.373 21.867 42.224 1.00 0.00 O ATOM 2773 N GLU 381 18.278 19.293 40.932 1.00 0.00 N ATOM 2774 CA GLU 381 19.193 18.870 39.919 1.00 0.00 C ATOM 2775 C GLU 381 18.490 17.887 38.928 1.00 0.00 C ATOM 2776 O GLU 381 17.379 17.414 39.251 1.00 0.00 O ATOM 2777 CB GLU 381 20.414 18.101 40.473 1.00 0.00 C ATOM 2778 CG GLU 381 21.310 18.869 41.453 1.00 0.00 C ATOM 2779 CD GLU 381 22.308 19.905 40.991 1.00 0.00 C ATOM 2780 OE1 GLU 381 22.810 19.840 39.848 1.00 0.00 O ATOM 2781 OE2 GLU 381 22.683 20.722 41.884 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.70 40.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 85.79 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 97.33 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 87.06 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.48 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 78.92 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 60.86 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 81.49 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 81.42 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.90 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 84.67 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 78.50 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.08 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 103.99 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.55 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 44.95 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 26.81 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 64.55 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 6.43 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 6.43 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 6.43 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.27 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.27 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2989 CRMSCA SECONDARY STRUCTURE . . 4.92 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.54 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.70 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.34 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 4.95 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.62 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.57 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.58 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.02 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 6.36 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.80 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.63 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.96 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 5.64 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.23 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.67 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.011 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 4.692 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.186 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.099 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.065 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 4.747 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.284 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 6.836 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.205 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 9.616 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 6.122 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.359 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 7.383 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.611 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 5.370 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.822 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 7.048 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 12 22 31 31 DISTCA CA (P) 0.00 3.23 3.23 38.71 70.97 31 DISTCA CA (RMS) 0.00 1.02 1.02 4.20 5.82 DISTCA ALL (N) 0 2 8 73 177 253 254 DISTALL ALL (P) 0.00 0.79 3.15 28.74 69.69 254 DISTALL ALL (RMS) 0.00 1.11 2.30 4.17 6.16 DISTALL END of the results output