####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 252), selected 31 , name T0537TS399_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS399_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 355 - 381 4.97 7.98 LCS_AVERAGE: 83.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 367 - 377 1.98 9.09 LCS_AVERAGE: 23.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 366 - 371 0.97 9.46 LCS_AVERAGE: 13.94 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 16 3 3 3 4 5 6 6 8 9 12 13 13 14 14 23 23 25 25 25 26 LCS_GDT A 352 A 352 3 6 16 3 3 3 4 5 7 7 9 12 12 14 15 19 20 23 23 25 27 27 27 LCS_GDT E 353 E 353 5 6 20 3 5 5 6 7 8 11 11 13 16 19 21 24 24 26 27 27 28 29 29 LCS_GDT E 354 E 354 5 6 20 3 5 5 6 7 8 11 11 14 16 19 21 24 24 26 27 27 28 29 29 LCS_GDT L 355 L 355 5 6 27 3 5 5 6 7 8 11 11 13 16 19 21 24 24 26 27 27 28 29 29 LCS_GDT G 356 G 356 5 6 27 3 5 5 6 7 8 11 12 15 17 20 22 24 25 26 27 27 28 29 29 LCS_GDT N 357 N 357 5 6 27 3 4 5 7 11 13 16 16 18 22 22 23 24 25 26 27 27 28 29 29 LCS_GDT I 358 I 358 3 4 27 3 3 5 7 11 13 16 16 18 19 22 23 24 25 26 27 27 28 29 29 LCS_GDT I 359 I 359 3 4 27 3 3 7 8 11 13 16 19 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT V 360 V 360 4 4 27 3 3 4 7 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT A 361 A 361 4 4 27 3 3 4 7 7 13 18 20 21 22 23 23 23 24 25 25 26 28 29 29 LCS_GDT W 362 W 362 4 5 27 3 3 4 5 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT N 363 N 363 4 5 27 3 3 4 6 11 15 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT P 364 P 364 3 5 27 3 3 4 5 8 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT N 365 N 365 3 7 27 3 3 4 5 8 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT L 366 L 366 6 9 27 3 5 7 9 11 15 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT W 367 W 367 6 11 27 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT K 368 K 368 6 11 27 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT K 369 K 369 6 11 27 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT G 370 G 370 6 11 27 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT T 371 T 371 6 11 27 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT N 372 N 372 4 11 27 3 3 6 8 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT G 373 G 373 4 11 27 3 4 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT Y 374 Y 374 4 11 27 3 4 5 8 11 14 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT P 375 P 375 4 11 27 3 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT I 376 I 376 4 11 27 3 5 5 8 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT F 377 F 377 4 11 27 4 4 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT Q 378 Q 378 4 6 27 4 4 4 5 10 13 17 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT W 379 W 379 4 5 27 4 5 6 8 11 13 16 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT S 380 S 380 4 5 27 4 4 4 6 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 LCS_GDT E 381 E 381 3 5 27 3 3 3 9 11 16 18 20 22 22 23 23 24 25 25 25 26 28 29 29 LCS_AVERAGE LCS_A: 40.37 ( 13.94 23.83 83.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 9 11 16 18 20 22 22 23 23 24 25 26 27 27 28 29 29 GDT PERCENT_AT 12.90 16.13 22.58 29.03 35.48 51.61 58.06 64.52 70.97 70.97 74.19 74.19 77.42 80.65 83.87 87.10 87.10 90.32 93.55 93.55 GDT RMS_LOCAL 0.15 0.34 0.92 1.27 1.69 2.45 2.52 2.69 3.11 3.06 3.24 3.24 3.79 4.17 4.96 5.23 5.23 5.37 5.67 5.67 GDT RMS_ALL_AT 10.93 8.91 10.13 10.17 9.27 10.06 10.14 10.22 9.45 9.89 9.65 9.65 8.72 8.36 7.33 7.09 7.09 7.47 7.14 7.14 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 27.022 0 0.043 0.046 28.855 0.000 0.000 LGA A 352 A 352 24.836 0 0.383 0.378 26.240 0.000 0.000 LGA E 353 E 353 21.318 0 0.581 1.188 25.902 0.000 0.000 LGA E 354 E 354 20.759 0 0.106 1.278 27.609 0.000 0.000 LGA L 355 L 355 17.821 0 0.079 1.346 20.602 0.000 0.000 LGA G 356 G 356 12.982 0 0.599 0.599 15.099 0.000 0.000 LGA N 357 N 357 10.898 0 0.567 0.671 11.929 0.119 0.060 LGA I 358 I 358 11.451 0 0.580 0.647 18.497 1.071 0.536 LGA I 359 I 359 6.570 0 0.523 0.840 8.257 23.095 18.036 LGA V 360 V 360 2.101 0 0.596 1.440 6.296 64.762 48.435 LGA A 361 A 361 3.685 0 0.182 0.184 5.509 55.714 48.857 LGA W 362 W 362 2.553 0 0.080 1.165 11.304 56.071 24.728 LGA N 363 N 363 3.520 0 0.473 0.894 10.300 50.238 28.452 LGA P 364 P 364 2.933 0 0.048 0.345 4.659 61.190 54.014 LGA N 365 N 365 3.214 0 0.658 0.548 8.145 54.167 33.869 LGA L 366 L 366 2.434 0 0.575 1.397 8.625 79.643 49.643 LGA W 367 W 367 2.302 0 0.062 0.120 3.232 57.262 61.769 LGA K 368 K 368 3.150 0 0.038 1.114 3.685 61.190 62.646 LGA K 369 K 369 3.048 0 0.111 0.869 7.976 51.786 35.026 LGA G 370 G 370 2.253 0 0.140 0.140 2.262 66.786 66.786 LGA T 371 T 371 2.382 0 0.605 0.956 5.813 65.119 55.714 LGA N 372 N 372 3.114 0 0.070 1.175 8.149 57.381 35.774 LGA G 373 G 373 1.441 0 0.674 0.674 3.738 67.738 67.738 LGA Y 374 Y 374 3.828 0 0.102 1.202 14.192 53.810 20.159 LGA P 375 P 375 2.256 0 0.092 0.385 6.254 63.095 47.483 LGA I 376 I 376 2.360 0 0.136 1.226 9.492 67.024 41.964 LGA F 377 F 377 1.245 0 0.567 1.360 10.095 73.095 37.489 LGA Q 378 Q 378 5.803 0 0.076 0.292 11.068 22.976 11.587 LGA W 379 W 379 6.994 0 0.226 1.083 11.638 20.595 6.395 LGA S 380 S 380 2.841 0 0.586 0.747 3.639 53.810 56.190 LGA E 381 E 381 1.224 2 0.022 1.152 4.282 56.905 47.619 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 123 99.19 254 252 99.21 31 SUMMARY(RMSD_GDC): 6.806 6.583 7.459 41.440 30.999 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 20 2.69 49.194 45.445 0.716 LGA_LOCAL RMSD: 2.695 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.222 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.806 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.314269 * X + 0.055854 * Y + 0.947689 * Z + 6.329187 Y_new = -0.388838 * X + -0.918263 * Y + -0.074825 * Z + 84.376915 Z_new = 0.866049 * X + -0.392013 * Y + 0.310300 * Z + 61.248280 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.250533 -1.047244 -0.901226 [DEG: -128.9460 -60.0026 -51.6365 ] ZXZ: 1.492004 1.255288 1.995848 [DEG: 85.4855 71.9227 114.3537 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS399_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS399_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 20 2.69 45.445 6.81 REMARK ---------------------------------------------------------- MOLECULE T0537TS399_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 22.208 28.882 64.029 1.00 0.00 N ATOM 2530 CA SER 351 23.018 27.706 64.125 1.00 0.00 C ATOM 2531 C SER 351 23.054 27.298 65.563 1.00 0.00 C ATOM 2532 O SER 351 22.712 27.992 66.487 1.00 0.00 O ATOM 2533 CB SER 351 24.437 27.992 63.628 1.00 0.00 C ATOM 2534 OG SER 351 25.106 28.898 64.488 1.00 0.00 O ATOM 2535 N ALA 352 23.508 26.057 65.811 1.00 0.00 N ATOM 2536 CA ALA 352 23.673 25.511 67.127 1.00 0.00 C ATOM 2537 C ALA 352 22.405 25.654 67.901 1.00 0.00 C ATOM 2538 O ALA 352 22.350 25.952 69.042 1.00 0.00 O ATOM 2539 CB ALA 352 24.783 26.239 67.869 1.00 0.00 C ATOM 2540 N GLU 353 21.255 25.428 67.242 1.00 0.00 N ATOM 2541 CA GLU 353 19.986 25.570 67.888 1.00 0.00 C ATOM 2542 C GLU 353 19.322 24.229 67.835 1.00 0.00 C ATOM 2543 O GLU 353 19.611 23.361 67.074 1.00 0.00 O ATOM 2544 CB GLU 353 19.132 26.615 67.168 1.00 0.00 C ATOM 2545 CG GLU 353 19.754 28.001 67.122 1.00 0.00 C ATOM 2546 CD GLU 353 19.782 28.672 68.481 1.00 0.00 C ATOM 2547 OE1 GLU 353 19.115 28.165 69.407 1.00 0.00 O ATOM 2548 OE2 GLU 353 20.470 29.705 68.619 1.00 0.00 O ATOM 2549 N GLU 354 18.330 24.008 68.720 1.00 0.00 N ATOM 2550 CA GLU 354 17.610 22.767 68.811 1.00 0.00 C ATOM 2551 C GLU 354 16.895 22.601 67.513 1.00 0.00 C ATOM 2552 O GLU 354 16.530 21.538 67.037 1.00 0.00 O ATOM 2553 CB GLU 354 16.612 22.812 69.971 1.00 0.00 C ATOM 2554 CG GLU 354 17.260 22.856 71.345 1.00 0.00 C ATOM 2555 CD GLU 354 18.103 21.629 71.632 1.00 0.00 C ATOM 2556 OE1 GLU 354 17.574 20.504 71.517 1.00 0.00 O ATOM 2557 OE2 GLU 354 19.294 21.792 71.971 1.00 0.00 O ATOM 2558 N LEU 355 16.658 23.744 66.849 1.00 0.00 N ATOM 2559 CA LEU 355 15.947 23.871 65.614 1.00 0.00 C ATOM 2560 C LEU 355 16.640 23.025 64.589 1.00 0.00 C ATOM 2561 O LEU 355 16.104 22.524 63.631 1.00 0.00 O ATOM 2562 CB LEU 355 15.932 25.330 65.152 1.00 0.00 C ATOM 2563 CG LEU 355 15.108 25.636 63.900 1.00 0.00 C ATOM 2564 CD1 LEU 355 13.646 25.280 64.118 1.00 0.00 C ATOM 2565 CD2 LEU 355 15.192 27.114 63.549 1.00 0.00 C ATOM 2566 N GLY 356 17.960 22.828 64.783 1.00 0.00 N ATOM 2567 CA GLY 356 18.713 22.006 63.886 1.00 0.00 C ATOM 2568 C GLY 356 18.661 20.623 64.435 1.00 0.00 C ATOM 2569 O GLY 356 18.940 20.326 65.556 1.00 0.00 O ATOM 2570 N ASN 357 18.271 19.659 63.585 1.00 0.00 N ATOM 2571 CA ASN 357 18.168 18.313 64.053 1.00 0.00 C ATOM 2572 C ASN 357 19.028 17.474 63.175 1.00 0.00 C ATOM 2573 O ASN 357 19.506 17.835 62.134 1.00 0.00 O ATOM 2574 CB ASN 357 16.717 17.831 63.984 1.00 0.00 C ATOM 2575 CG ASN 357 15.780 18.686 64.814 1.00 0.00 C ATOM 2576 OD1 ASN 357 15.890 18.736 66.039 1.00 0.00 O ATOM 2577 ND2 ASN 357 14.851 19.361 64.147 1.00 0.00 N ATOM 2578 N ILE 358 19.267 16.229 63.611 1.00 0.00 N ATOM 2579 CA ILE 358 20.091 15.355 62.845 1.00 0.00 C ATOM 2580 C ILE 358 19.159 14.595 61.960 1.00 0.00 C ATOM 2581 O ILE 358 18.351 13.770 62.340 1.00 0.00 O ATOM 2582 CB ILE 358 20.882 14.391 63.747 1.00 0.00 C ATOM 2583 CG1 ILE 358 21.787 15.173 64.701 1.00 0.00 C ATOM 2584 CG2 ILE 358 21.751 13.467 62.907 1.00 0.00 C ATOM 2585 CD1 ILE 358 22.439 14.317 65.764 1.00 0.00 C ATOM 2586 N ILE 359 19.255 14.875 60.647 1.00 0.00 N ATOM 2587 CA ILE 359 18.357 14.336 59.671 1.00 0.00 C ATOM 2588 C ILE 359 19.182 14.212 58.433 1.00 0.00 C ATOM 2589 O ILE 359 20.370 14.322 58.396 1.00 0.00 O ATOM 2590 CB ILE 359 17.151 15.265 59.440 1.00 0.00 C ATOM 2591 CG1 ILE 359 16.102 14.572 58.568 1.00 0.00 C ATOM 2592 CG2 ILE 359 17.589 16.544 58.742 1.00 0.00 C ATOM 2593 CD1 ILE 359 14.763 15.275 58.548 1.00 0.00 C ATOM 2594 N VAL 360 18.515 13.959 57.292 1.00 0.00 N ATOM 2595 CA VAL 360 19.028 13.907 55.958 1.00 0.00 C ATOM 2596 C VAL 360 18.864 12.487 55.541 1.00 0.00 C ATOM 2597 O VAL 360 18.431 11.656 56.232 1.00 0.00 O ATOM 2598 CB VAL 360 20.509 14.325 55.906 1.00 0.00 C ATOM 2599 CG1 VAL 360 20.676 15.758 56.390 1.00 0.00 C ATOM 2600 CG2 VAL 360 21.350 13.418 56.791 1.00 0.00 C ATOM 2601 N ALA 361 19.237 12.143 54.294 1.00 0.00 N ATOM 2602 CA ALA 361 18.966 10.807 53.853 1.00 0.00 C ATOM 2603 C ALA 361 19.674 9.826 54.738 1.00 0.00 C ATOM 2604 O ALA 361 19.155 8.915 55.241 1.00 0.00 O ATOM 2605 CB ALA 361 19.445 10.613 52.423 1.00 0.00 C ATOM 2606 N TRP 362 20.991 10.003 54.970 1.00 0.00 N ATOM 2607 CA TRP 362 21.637 9.066 55.842 1.00 0.00 C ATOM 2608 C TRP 362 21.174 9.340 57.228 1.00 0.00 C ATOM 2609 O TRP 362 21.088 8.510 58.098 1.00 0.00 O ATOM 2610 CB TRP 362 23.157 9.222 55.765 1.00 0.00 C ATOM 2611 CG TRP 362 23.743 8.753 54.468 1.00 0.00 C ATOM 2612 CD1 TRP 362 24.257 9.532 53.472 1.00 0.00 C ATOM 2613 CD2 TRP 362 23.875 7.397 54.027 1.00 0.00 C ATOM 2614 NE1 TRP 362 24.701 8.746 52.436 1.00 0.00 N ATOM 2615 CE2 TRP 362 24.478 7.429 52.754 1.00 0.00 C ATOM 2616 CE3 TRP 362 23.542 6.158 54.582 1.00 0.00 C ATOM 2617 CZ2 TRP 362 24.755 6.271 52.028 1.00 0.00 C ATOM 2618 CZ3 TRP 362 23.819 5.013 53.860 1.00 0.00 C ATOM 2619 CH2 TRP 362 24.419 5.074 52.597 1.00 0.00 H ATOM 2620 N ASN 363 20.831 10.618 57.490 1.00 0.00 N ATOM 2621 CA ASN 363 20.352 11.133 58.745 1.00 0.00 C ATOM 2622 C ASN 363 21.449 11.609 59.667 1.00 0.00 C ATOM 2623 O ASN 363 21.263 12.136 60.541 1.00 0.00 O ATOM 2624 CB ASN 363 19.576 10.055 59.505 1.00 0.00 C ATOM 2625 CG ASN 363 18.298 9.650 58.799 1.00 0.00 C ATOM 2626 OD1 ASN 363 17.410 10.474 58.581 1.00 0.00 O ATOM 2627 ND2 ASN 363 18.201 8.376 58.437 1.00 0.00 N ATOM 2628 N PRO 364 22.727 11.420 59.484 1.00 0.00 N ATOM 2629 CA PRO 364 23.590 12.124 60.398 1.00 0.00 C ATOM 2630 C PRO 364 23.770 13.583 60.092 1.00 0.00 C ATOM 2631 O PRO 364 24.241 14.341 60.826 1.00 0.00 O ATOM 2632 CB PRO 364 24.930 11.398 60.277 1.00 0.00 C ATOM 2633 CG PRO 364 24.949 10.878 58.878 1.00 0.00 C ATOM 2634 CD PRO 364 23.530 10.501 58.555 1.00 0.00 C ATOM 2635 N ASN 365 23.365 14.053 58.897 1.00 0.00 N ATOM 2636 CA ASN 365 23.658 15.402 58.495 1.00 0.00 C ATOM 2637 C ASN 365 22.807 16.394 59.223 1.00 0.00 C ATOM 2638 O ASN 365 21.690 16.183 59.628 1.00 0.00 O ATOM 2639 CB ASN 365 23.406 15.581 56.997 1.00 0.00 C ATOM 2640 CG ASN 365 24.436 14.866 56.143 1.00 0.00 C ATOM 2641 OD1 ASN 365 25.534 14.559 56.607 1.00 0.00 O ATOM 2642 ND2 ASN 365 24.082 14.599 54.893 1.00 0.00 N ATOM 2643 N LEU 366 23.360 17.607 59.425 1.00 0.00 N ATOM 2644 CA LEU 366 22.642 18.629 60.125 1.00 0.00 C ATOM 2645 C LEU 366 21.728 19.281 59.146 1.00 0.00 C ATOM 2646 O LEU 366 22.071 19.763 58.104 1.00 0.00 O ATOM 2647 CB LEU 366 23.611 19.662 60.706 1.00 0.00 C ATOM 2648 CG LEU 366 24.583 19.154 61.772 1.00 0.00 C ATOM 2649 CD1 LEU 366 25.563 20.248 62.171 1.00 0.00 C ATOM 2650 CD2 LEU 366 23.832 18.712 63.019 1.00 0.00 C ATOM 2651 N TRP 367 20.429 19.314 59.487 1.00 0.00 N ATOM 2652 CA TRP 367 19.448 19.928 58.653 1.00 0.00 C ATOM 2653 C TRP 367 18.678 20.873 59.501 1.00 0.00 C ATOM 2654 O TRP 367 18.610 20.832 60.711 1.00 0.00 O ATOM 2655 CB TRP 367 18.513 18.872 58.059 1.00 0.00 C ATOM 2656 CG TRP 367 19.198 17.919 57.131 1.00 0.00 C ATOM 2657 CD1 TRP 367 19.891 16.793 57.476 1.00 0.00 C ATOM 2658 CD2 TRP 367 19.258 18.004 55.701 1.00 0.00 C ATOM 2659 NE1 TRP 367 20.378 16.173 56.351 1.00 0.00 N ATOM 2660 CE2 TRP 367 20.003 16.898 55.248 1.00 0.00 C ATOM 2661 CE3 TRP 367 18.754 18.909 54.762 1.00 0.00 C ATOM 2662 CZ2 TRP 367 20.256 16.672 53.896 1.00 0.00 C ATOM 2663 CZ3 TRP 367 19.008 18.680 53.422 1.00 0.00 C ATOM 2664 CH2 TRP 367 19.751 17.573 53.000 1.00 0.00 H ATOM 2665 N LYS 368 18.020 21.831 58.830 1.00 0.00 N ATOM 2666 CA LYS 368 17.270 22.854 59.478 1.00 0.00 C ATOM 2667 C LYS 368 15.853 22.712 59.045 1.00 0.00 C ATOM 2668 O LYS 368 15.494 22.143 58.051 1.00 0.00 O ATOM 2669 CB LYS 368 17.800 24.235 59.089 1.00 0.00 C ATOM 2670 CG LYS 368 19.222 24.508 59.551 1.00 0.00 C ATOM 2671 CD LYS 368 19.293 24.658 61.062 1.00 0.00 C ATOM 2672 CE LYS 368 18.690 25.978 61.514 1.00 0.00 C ATOM 2673 NZ LYS 368 18.615 26.076 62.998 1.00 0.00 N ATOM 2674 N LYS 369 14.934 23.273 59.847 1.00 0.00 N ATOM 2675 CA LYS 369 13.551 23.217 59.509 1.00 0.00 C ATOM 2676 C LYS 369 13.264 24.548 58.897 1.00 0.00 C ATOM 2677 O LYS 369 13.337 25.543 59.470 1.00 0.00 O ATOM 2678 CB LYS 369 12.702 22.980 60.759 1.00 0.00 C ATOM 2679 CG LYS 369 11.220 22.794 60.477 1.00 0.00 C ATOM 2680 CD LYS 369 10.434 22.599 61.764 1.00 0.00 C ATOM 2681 CE LYS 369 8.954 22.402 61.481 1.00 0.00 C ATOM 2682 NZ LYS 369 8.171 22.204 62.733 1.00 0.00 N ATOM 2683 N GLY 370 12.896 24.605 57.608 1.00 0.00 N ATOM 2684 CA GLY 370 12.486 25.868 57.073 1.00 0.00 C ATOM 2685 C GLY 370 11.072 25.904 57.500 1.00 0.00 C ATOM 2686 O GLY 370 10.611 25.101 58.137 1.00 0.00 O ATOM 2687 N THR 371 10.284 26.922 57.130 1.00 0.00 N ATOM 2688 CA THR 371 8.935 26.857 57.595 1.00 0.00 C ATOM 2689 C THR 371 8.326 25.670 56.960 1.00 0.00 C ATOM 2690 O THR 371 8.027 25.594 55.790 1.00 0.00 O ATOM 2691 CB THR 371 8.144 28.121 57.212 1.00 0.00 C ATOM 2692 OG1 THR 371 8.790 29.277 57.761 1.00 0.00 O ATOM 2693 CG2 THR 371 6.725 28.048 57.754 1.00 0.00 C ATOM 2694 N ASN 372 8.107 24.623 57.784 1.00 0.00 N ATOM 2695 CA ASN 372 7.537 23.327 57.553 1.00 0.00 C ATOM 2696 C ASN 372 8.300 22.449 56.607 1.00 0.00 C ATOM 2697 O ASN 372 7.827 21.565 56.032 1.00 0.00 O ATOM 2698 CB ASN 372 6.132 23.457 56.962 1.00 0.00 C ATOM 2699 CG ASN 372 5.132 24.017 57.955 1.00 0.00 C ATOM 2700 OD1 ASN 372 5.276 23.838 59.164 1.00 0.00 O ATOM 2701 ND2 ASN 372 4.113 24.699 57.445 1.00 0.00 N ATOM 2702 N GLY 373 9.613 22.691 56.406 1.00 0.00 N ATOM 2703 CA GLY 373 10.333 21.873 55.463 1.00 0.00 C ATOM 2704 C GLY 373 11.689 21.623 56.041 1.00 0.00 C ATOM 2705 O GLY 373 12.099 22.164 56.989 1.00 0.00 O ATOM 2706 N TYR 374 12.482 20.720 55.433 1.00 0.00 N ATOM 2707 CA TYR 374 13.798 20.509 55.977 1.00 0.00 C ATOM 2708 C TYR 374 14.830 20.857 54.955 1.00 0.00 C ATOM 2709 O TYR 374 15.156 20.193 54.023 1.00 0.00 O ATOM 2710 CB TYR 374 13.980 19.045 56.384 1.00 0.00 C ATOM 2711 CG TYR 374 13.035 18.589 57.472 1.00 0.00 C ATOM 2712 CD1 TYR 374 11.831 17.975 57.157 1.00 0.00 C ATOM 2713 CD2 TYR 374 13.351 18.776 58.812 1.00 0.00 C ATOM 2714 CE1 TYR 374 10.960 17.554 58.145 1.00 0.00 C ATOM 2715 CE2 TYR 374 12.493 18.362 59.814 1.00 0.00 C ATOM 2716 CZ TYR 374 11.290 17.747 59.469 1.00 0.00 C ATOM 2717 OH TYR 374 10.426 17.330 60.455 1.00 0.00 H ATOM 2718 N PRO 375 15.419 22.005 55.115 1.00 0.00 N ATOM 2719 CA PRO 375 16.519 22.372 54.267 1.00 0.00 C ATOM 2720 C PRO 375 17.773 21.834 54.875 1.00 0.00 C ATOM 2721 O PRO 375 17.850 21.432 55.975 1.00 0.00 O ATOM 2722 CB PRO 375 16.479 23.901 54.250 1.00 0.00 C ATOM 2723 CG PRO 375 16.033 24.278 55.622 1.00 0.00 C ATOM 2724 CD PRO 375 15.000 23.261 56.018 1.00 0.00 C ATOM 2725 N ILE 376 18.880 21.811 54.110 1.00 0.00 N ATOM 2726 CA ILE 376 20.128 21.389 54.666 1.00 0.00 C ATOM 2727 C ILE 376 20.655 22.571 55.411 1.00 0.00 C ATOM 2728 O ILE 376 20.459 23.704 55.107 1.00 0.00 O ATOM 2729 CB ILE 376 21.119 20.958 53.568 1.00 0.00 C ATOM 2730 CG1 ILE 376 22.277 20.165 54.176 1.00 0.00 C ATOM 2731 CG2 ILE 376 21.689 22.176 52.857 1.00 0.00 C ATOM 2732 CD1 ILE 376 23.175 19.510 53.149 1.00 0.00 C ATOM 2733 N PHE 377 21.402 22.316 56.498 1.00 0.00 N ATOM 2734 CA PHE 377 21.891 23.356 57.353 1.00 0.00 C ATOM 2735 C PHE 377 22.745 24.300 56.569 1.00 0.00 C ATOM 2736 O PHE 377 22.655 25.466 56.619 1.00 0.00 O ATOM 2737 CB PHE 377 22.728 22.765 58.489 1.00 0.00 C ATOM 2738 CG PHE 377 23.313 23.798 59.410 1.00 0.00 C ATOM 2739 CD1 PHE 377 22.541 24.385 60.397 1.00 0.00 C ATOM 2740 CD2 PHE 377 24.638 24.182 59.290 1.00 0.00 C ATOM 2741 CE1 PHE 377 23.079 25.334 61.244 1.00 0.00 C ATOM 2742 CE2 PHE 377 25.177 25.131 60.138 1.00 0.00 C ATOM 2743 CZ PHE 377 24.403 25.707 61.111 1.00 0.00 C ATOM 2744 N GLN 378 23.672 23.776 55.757 1.00 0.00 N ATOM 2745 CA GLN 378 24.545 24.681 55.072 1.00 0.00 C ATOM 2746 C GLN 378 23.748 25.540 54.146 1.00 0.00 C ATOM 2747 O GLN 378 23.932 26.693 53.984 1.00 0.00 O ATOM 2748 CB GLN 378 25.586 23.910 54.260 1.00 0.00 C ATOM 2749 CG GLN 378 26.632 23.199 55.106 1.00 0.00 C ATOM 2750 CD GLN 378 27.577 22.355 54.275 1.00 0.00 C ATOM 2751 OE1 GLN 378 27.404 22.221 53.064 1.00 0.00 O ATOM 2752 NE2 GLN 378 28.582 21.780 54.926 1.00 0.00 N ATOM 2753 N TRP 379 22.757 24.952 53.453 1.00 0.00 N ATOM 2754 CA TRP 379 22.020 25.696 52.474 1.00 0.00 C ATOM 2755 C TRP 379 21.223 26.777 53.136 1.00 0.00 C ATOM 2756 O TRP 379 21.101 27.883 52.712 1.00 0.00 O ATOM 2757 CB TRP 379 21.059 24.777 51.715 1.00 0.00 C ATOM 2758 CG TRP 379 20.257 25.484 50.666 1.00 0.00 C ATOM 2759 CD1 TRP 379 20.637 25.747 49.382 1.00 0.00 C ATOM 2760 CD2 TRP 379 18.935 26.021 50.812 1.00 0.00 C ATOM 2761 NE1 TRP 379 19.636 26.413 48.717 1.00 0.00 N ATOM 2762 CE2 TRP 379 18.580 26.593 49.575 1.00 0.00 C ATOM 2763 CE3 TRP 379 18.020 26.073 51.867 1.00 0.00 C ATOM 2764 CZ2 TRP 379 17.348 27.209 49.364 1.00 0.00 C ATOM 2765 CZ3 TRP 379 16.799 26.685 51.654 1.00 0.00 C ATOM 2766 CH2 TRP 379 16.472 27.246 50.415 1.00 0.00 H ATOM 2767 N SER 380 20.610 26.459 54.292 1.00 0.00 N ATOM 2768 CA SER 380 19.644 27.334 54.900 1.00 0.00 C ATOM 2769 C SER 380 20.178 28.694 55.209 1.00 0.00 C ATOM 2770 O SER 380 19.614 29.699 54.996 1.00 0.00 O ATOM 2771 CB SER 380 19.145 26.745 56.221 1.00 0.00 C ATOM 2772 OG SER 380 20.191 26.671 57.173 1.00 0.00 O ATOM 2773 N GLU 381 21.384 28.769 55.767 1.00 0.00 N ATOM 2774 CA GLU 381 21.950 30.048 56.082 1.00 0.00 C ATOM 2775 C GLU 381 21.450 30.451 57.462 1.00 0.00 C ATOM 2776 CB GLU 381 21.522 31.093 55.050 1.00 0.00 C ATOM 2777 CG GLU 381 22.079 30.853 53.656 1.00 0.00 C ATOM 2778 CD GLU 381 21.557 31.850 52.641 1.00 0.00 C ATOM 2779 OE1 GLU 381 20.732 32.708 53.019 1.00 0.00 O ATOM 2780 OE2 GLU 381 21.974 31.774 51.466 1.00 0.00 O TER 2781 GLU 381 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 252 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.01 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 96.57 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 84.67 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 103.10 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.28 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 90.54 36.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 78.98 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 91.04 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 101.27 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.51 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 82.03 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 94.79 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 82.77 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 52.84 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.86 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 61.97 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 35.05 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 58.86 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 5.59 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 5.59 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 5.59 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.81 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.81 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2196 CRMSCA SECONDARY STRUCTURE . . 6.05 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.19 26 100.0 26 CRMSCA BURIED . . . . . . . . 4.24 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.82 151 99.3 152 CRMSMC SECONDARY STRUCTURE . . 6.03 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.14 128 99.2 129 CRMSMC BURIED . . . . . . . . 4.65 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.40 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 8.44 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.15 41 100.0 41 CRMSSC SURFACE . . . . . . . . 8.63 119 99.2 120 CRMSSC BURIED . . . . . . . . 4.98 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.57 252 99.2 254 CRMSALL SECONDARY STRUCTURE . . 6.97 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.88 222 99.1 224 CRMSALL BURIED . . . . . . . . 4.70 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.116 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.257 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.524 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 3.995 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.127 1.000 0.500 151 99.3 152 ERRMC SECONDARY STRUCTURE . . 5.204 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.463 1.000 0.500 128 99.2 129 ERRMC BURIED . . . . . . . . 4.257 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.639 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 7.654 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 7.416 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 7.892 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 4.628 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.799 1.000 0.500 252 99.2 254 ERRALL SECONDARY STRUCTURE . . 6.098 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.134 1.000 0.500 222 99.1 224 ERRALL BURIED . . . . . . . . 4.319 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 12 28 31 31 DISTCA CA (P) 0.00 0.00 12.90 38.71 90.32 31 DISTCA CA (RMS) 0.00 0.00 2.51 3.73 5.79 DISTCA ALL (N) 1 10 29 82 211 252 254 DISTALL ALL (P) 0.39 3.94 11.42 32.28 83.07 254 DISTALL ALL (RMS) 0.88 1.58 2.24 3.64 6.09 DISTALL END of the results output