####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS386_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS386_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 358 - 376 4.80 9.22 LCS_AVERAGE: 56.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 363 - 371 1.65 10.73 LCS_AVERAGE: 22.68 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 376 - 381 0.97 18.04 LCS_AVERAGE: 14.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 12 3 3 3 3 4 11 14 14 15 16 19 20 22 22 22 23 25 26 26 27 LCS_GDT A 352 A 352 3 4 16 3 3 3 3 4 6 8 10 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT E 353 E 353 3 4 17 3 3 3 3 4 4 5 11 12 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT E 354 E 354 3 4 17 3 3 3 3 4 6 8 10 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT L 355 L 355 3 5 17 3 3 3 4 4 5 8 10 12 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT G 356 G 356 3 5 17 3 3 3 4 4 5 6 9 9 10 13 15 15 17 19 21 25 26 26 27 LCS_GDT N 357 N 357 3 5 17 3 3 3 4 4 5 6 7 9 10 13 15 15 17 18 21 25 26 26 27 LCS_GDT I 358 I 358 3 5 19 3 3 3 4 4 6 8 9 12 14 18 21 22 22 22 23 25 26 26 27 LCS_GDT I 359 I 359 3 5 19 3 3 3 4 5 5 6 9 9 11 13 15 15 18 19 22 25 26 26 27 LCS_GDT V 360 V 360 3 4 19 3 3 3 4 5 5 7 9 11 13 18 21 22 22 22 23 25 26 26 27 LCS_GDT A 361 A 361 5 7 19 3 4 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT W 362 W 362 5 7 19 3 4 6 6 6 8 11 13 14 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT N 363 N 363 5 9 19 3 4 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT P 364 P 364 5 9 19 3 4 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT N 365 N 365 5 9 19 3 4 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT L 366 L 366 5 9 19 3 4 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT W 367 W 367 5 9 19 3 5 5 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT K 368 K 368 5 9 19 3 5 5 6 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT K 369 K 369 5 9 19 3 5 5 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT G 370 G 370 5 9 19 3 5 5 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT T 371 T 371 5 9 19 3 5 5 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT N 372 N 372 4 7 19 3 4 5 6 6 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT G 373 G 373 4 7 19 3 4 5 6 6 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT Y 374 Y 374 4 8 19 3 4 5 6 8 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT P 375 P 375 5 8 19 4 4 6 7 8 9 10 10 12 16 19 21 22 22 22 23 25 26 26 27 LCS_GDT I 376 I 376 6 8 19 4 4 6 7 8 9 10 10 11 11 13 15 15 19 22 23 25 26 26 27 LCS_GDT F 377 F 377 6 8 15 4 4 6 7 8 9 10 10 11 11 13 15 15 15 17 19 19 20 21 25 LCS_GDT Q 378 Q 378 6 8 13 4 4 6 7 8 9 10 10 11 11 13 15 15 15 16 19 20 21 26 27 LCS_GDT W 379 W 379 6 8 13 3 4 6 7 8 9 10 10 11 11 12 15 15 15 17 19 19 20 21 22 LCS_GDT S 380 S 380 6 8 13 3 4 6 7 8 9 10 10 11 11 13 15 15 15 17 19 19 20 21 22 LCS_GDT E 381 E 381 6 8 13 3 4 6 7 8 9 10 10 11 11 12 12 15 15 17 19 19 19 19 20 LCS_AVERAGE LCS_A: 31.11 ( 14.36 22.68 56.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 9 12 14 14 15 16 19 21 22 22 22 23 25 26 26 27 GDT PERCENT_AT 12.90 16.13 19.35 22.58 29.03 38.71 45.16 45.16 48.39 51.61 61.29 67.74 70.97 70.97 70.97 74.19 80.65 83.87 83.87 87.10 GDT RMS_LOCAL 0.33 0.77 0.94 1.15 1.65 2.50 2.65 2.65 2.97 3.21 3.78 4.29 4.36 4.36 4.36 4.76 5.60 5.68 5.68 6.14 GDT RMS_ALL_AT 17.25 11.18 17.60 17.71 10.73 9.89 10.00 10.00 9.79 9.59 9.31 8.85 8.93 8.93 8.93 8.76 8.38 8.43 8.43 8.23 # Checking swapping # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.582 0 0.030 0.693 6.321 47.143 40.476 LGA A 352 A 352 6.387 0 0.396 0.401 8.863 18.333 15.619 LGA E 353 E 353 7.450 0 0.606 0.612 10.288 14.405 8.148 LGA E 354 E 354 6.151 0 0.617 0.586 8.050 12.143 19.471 LGA L 355 L 355 8.141 0 0.656 1.027 10.449 3.690 9.524 LGA G 356 G 356 13.992 0 0.590 0.590 14.337 0.000 0.000 LGA N 357 N 357 13.470 0 0.397 0.960 17.136 0.000 0.000 LGA I 358 I 358 8.888 0 0.596 0.719 10.284 1.190 8.929 LGA I 359 I 359 12.129 0 0.600 1.540 17.090 0.119 0.060 LGA V 360 V 360 8.706 0 0.620 0.811 10.163 5.833 4.558 LGA A 361 A 361 3.033 0 0.679 0.613 4.576 45.357 47.714 LGA W 362 W 362 6.373 0 0.071 1.197 17.387 21.667 6.667 LGA N 363 N 363 2.817 0 0.049 1.148 3.913 63.690 63.452 LGA P 364 P 364 1.388 0 0.094 0.302 2.444 77.381 78.027 LGA N 365 N 365 1.935 0 0.073 0.187 3.754 75.119 61.786 LGA L 366 L 366 1.416 0 0.033 0.137 3.802 77.381 64.881 LGA W 367 W 367 2.667 0 0.033 0.358 9.247 64.881 31.190 LGA K 368 K 368 2.887 0 0.051 1.302 4.216 57.143 51.799 LGA K 369 K 369 2.784 0 0.081 0.816 4.367 59.048 52.751 LGA G 370 G 370 2.567 0 0.023 0.023 2.567 64.881 64.881 LGA T 371 T 371 2.229 0 0.568 1.299 5.328 61.190 58.503 LGA N 372 N 372 3.086 0 0.647 0.575 7.666 63.095 41.667 LGA G 373 G 373 3.375 0 0.201 0.201 4.493 46.905 46.905 LGA Y 374 Y 374 3.380 0 0.330 1.248 12.091 36.190 21.905 LGA P 375 P 375 6.452 0 0.502 0.746 10.082 14.286 23.673 LGA I 376 I 376 12.014 0 0.138 1.103 14.383 0.357 0.179 LGA F 377 F 377 16.949 0 0.103 0.872 24.008 0.000 0.000 LGA Q 378 Q 378 16.629 0 0.090 0.931 18.863 0.000 0.000 LGA W 379 W 379 21.302 0 0.519 0.597 28.167 0.000 0.000 LGA S 380 S 380 18.604 0 0.689 0.846 19.776 0.000 0.000 LGA E 381 E 381 23.004 1 0.352 1.008 30.405 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 7.929 7.800 9.808 30.046 26.541 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 2.65 39.516 37.675 0.508 LGA_LOCAL RMSD: 2.653 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.996 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.929 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.574934 * X + -0.133940 * Y + 0.807162 * Z + 50.915493 Y_new = 0.009062 * X + 0.985407 * Y + 0.169973 * Z + -22.076029 Z_new = -0.818149 * X + 0.105038 * Y + -0.565331 * Z + 86.531807 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.125832 0.958185 2.957889 [DEG: 179.0970 54.9000 169.4745 ] ZXZ: 1.778345 2.171630 -1.443110 [DEG: 101.8916 124.4253 -82.6841 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS386_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS386_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 2.65 37.675 7.93 REMARK ---------------------------------------------------------- MOLECULE T0537TS386_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 5.177 15.983 49.246 1.00 0.00 N ATOM 2530 CA SER 351 3.902 15.400 49.539 1.00 0.00 C ATOM 2531 CB SER 351 2.712 16.180 48.955 1.00 0.00 C ATOM 2532 OG SER 351 2.595 17.443 49.588 1.00 0.00 O ATOM 2533 C SER 351 3.837 14.037 48.935 1.00 0.00 C ATOM 2534 O SER 351 4.479 13.752 47.927 1.00 0.00 O ATOM 2535 N ALA 352 3.041 13.158 49.569 1.00 0.00 N ATOM 2536 CA ALA 352 2.797 11.827 49.100 1.00 0.00 C ATOM 2537 CB ALA 352 1.965 11.789 47.807 1.00 0.00 C ATOM 2538 C ALA 352 4.080 11.110 48.848 1.00 0.00 C ATOM 2539 O ALA 352 4.194 10.376 47.868 1.00 0.00 O ATOM 2540 N GLU 353 5.095 11.272 49.716 1.00 0.00 N ATOM 2541 CA GLU 353 6.251 10.497 49.389 1.00 0.00 C ATOM 2542 CB GLU 353 7.602 11.223 49.488 1.00 0.00 C ATOM 2543 CG GLU 353 8.136 11.411 50.903 1.00 0.00 C ATOM 2544 CD GLU 353 9.543 11.973 50.761 1.00 0.00 C ATOM 2545 OE1 GLU 353 9.696 12.996 50.044 1.00 0.00 O ATOM 2546 OE2 GLU 353 10.482 11.384 51.358 1.00 0.00 O ATOM 2547 C GLU 353 6.286 9.332 50.316 1.00 0.00 C ATOM 2548 O GLU 353 6.290 9.483 51.539 1.00 0.00 O ATOM 2549 N GLU 354 6.274 8.118 49.734 1.00 0.00 N ATOM 2550 CA GLU 354 6.357 6.946 50.544 1.00 0.00 C ATOM 2551 CB GLU 354 5.228 5.931 50.300 1.00 0.00 C ATOM 2552 CG GLU 354 3.880 6.353 50.882 1.00 0.00 C ATOM 2553 CD GLU 354 2.875 5.256 50.564 1.00 0.00 C ATOM 2554 OE1 GLU 354 2.736 4.914 49.359 1.00 0.00 O ATOM 2555 OE2 GLU 354 2.231 4.745 51.518 1.00 0.00 O ATOM 2556 C GLU 354 7.634 6.274 50.193 1.00 0.00 C ATOM 2557 O GLU 354 7.846 5.845 49.061 1.00 0.00 O ATOM 2558 N LEU 355 8.537 6.177 51.176 1.00 0.00 N ATOM 2559 CA LEU 355 9.777 5.517 50.943 1.00 0.00 C ATOM 2560 CB LEU 355 10.986 6.328 51.421 1.00 0.00 C ATOM 2561 CG LEU 355 11.100 7.701 50.733 1.00 0.00 C ATOM 2562 CD1 LEU 355 9.939 8.626 51.113 1.00 0.00 C ATOM 2563 CD2 LEU 355 12.448 8.357 51.025 1.00 0.00 C ATOM 2564 C LEU 355 9.689 4.288 51.777 1.00 0.00 C ATOM 2565 O LEU 355 9.026 4.286 52.814 1.00 0.00 O ATOM 2566 N GLY 356 10.330 3.189 51.348 1.00 0.00 N ATOM 2567 CA GLY 356 10.162 2.036 52.169 1.00 0.00 C ATOM 2568 C GLY 356 11.422 1.253 52.208 1.00 0.00 C ATOM 2569 O GLY 356 12.314 1.419 51.377 1.00 0.00 O ATOM 2570 N ASN 357 11.486 0.368 53.216 1.00 0.00 N ATOM 2571 CA ASN 357 12.542 -0.567 53.433 1.00 0.00 C ATOM 2572 CB ASN 357 12.611 -1.598 52.293 1.00 0.00 C ATOM 2573 CG ASN 357 13.381 -2.823 52.757 1.00 0.00 C ATOM 2574 OD1 ASN 357 12.906 -3.579 53.603 1.00 0.00 O ATOM 2575 ND2 ASN 357 14.591 -3.040 52.176 1.00 0.00 N ATOM 2576 C ASN 357 13.854 0.138 53.567 1.00 0.00 C ATOM 2577 O ASN 357 14.881 -0.366 53.118 1.00 0.00 O ATOM 2578 N ILE 358 13.868 1.308 54.232 1.00 0.00 N ATOM 2579 CA ILE 358 15.098 2.030 54.362 1.00 0.00 C ATOM 2580 CB ILE 358 15.041 3.426 53.817 1.00 0.00 C ATOM 2581 CG2 ILE 358 16.433 4.040 54.011 1.00 0.00 C ATOM 2582 CG1 ILE 358 14.594 3.466 52.354 1.00 0.00 C ATOM 2583 CD1 ILE 358 14.241 4.880 51.896 1.00 0.00 C ATOM 2584 C ILE 358 15.399 2.213 55.813 1.00 0.00 C ATOM 2585 O ILE 358 14.498 2.377 56.635 1.00 0.00 O ATOM 2586 N ILE 359 16.699 2.153 56.166 1.00 0.00 N ATOM 2587 CA ILE 359 17.083 2.472 57.508 1.00 0.00 C ATOM 2588 CB ILE 359 18.371 1.846 57.958 1.00 0.00 C ATOM 2589 CG2 ILE 359 18.171 0.326 58.000 1.00 0.00 C ATOM 2590 CG1 ILE 359 19.548 2.295 57.085 1.00 0.00 C ATOM 2591 CD1 ILE 359 20.899 1.891 57.673 1.00 0.00 C ATOM 2592 C ILE 359 17.215 3.969 57.545 1.00 0.00 C ATOM 2593 O ILE 359 17.539 4.604 56.545 1.00 0.00 O ATOM 2594 N VAL 360 16.906 4.595 58.691 1.00 0.00 N ATOM 2595 CA VAL 360 16.940 6.027 58.762 1.00 0.00 C ATOM 2596 CB VAL 360 16.463 6.550 60.087 1.00 0.00 C ATOM 2597 CG1 VAL 360 17.528 6.244 61.156 1.00 0.00 C ATOM 2598 CG2 VAL 360 16.106 8.035 59.934 1.00 0.00 C ATOM 2599 C VAL 360 18.348 6.496 58.549 1.00 0.00 C ATOM 2600 O VAL 360 19.307 5.803 58.878 1.00 0.00 O ATOM 2601 N ALA 361 18.506 7.705 57.976 1.00 0.00 N ATOM 2602 CA ALA 361 19.798 8.246 57.655 1.00 0.00 C ATOM 2603 CB ALA 361 19.716 9.641 57.024 1.00 0.00 C ATOM 2604 C ALA 361 20.615 8.378 58.903 1.00 0.00 C ATOM 2605 O ALA 361 20.113 8.770 59.956 1.00 0.00 O ATOM 2606 N TRP 362 21.911 8.021 58.802 1.00 0.00 N ATOM 2607 CA TRP 362 22.841 8.081 59.891 1.00 0.00 C ATOM 2608 CB TRP 362 24.214 7.508 59.521 1.00 0.00 C ATOM 2609 CG TRP 362 24.168 6.039 59.226 1.00 0.00 C ATOM 2610 CD2 TRP 362 23.954 5.047 60.235 1.00 0.00 C ATOM 2611 CD1 TRP 362 24.264 5.376 58.038 1.00 0.00 C ATOM 2612 NE1 TRP 362 24.127 4.026 58.246 1.00 0.00 N ATOM 2613 CE2 TRP 362 23.933 3.810 59.595 1.00 0.00 C ATOM 2614 CE3 TRP 362 23.782 5.161 61.584 1.00 0.00 C ATOM 2615 CZ2 TRP 362 23.739 2.657 60.300 1.00 0.00 C ATOM 2616 CZ3 TRP 362 23.591 3.997 62.293 1.00 0.00 C ATOM 2617 CH2 TRP 362 23.570 2.770 61.662 1.00 0.00 H ATOM 2618 C TRP 362 23.096 9.495 60.278 1.00 0.00 C ATOM 2619 O TRP 362 23.036 9.859 61.450 1.00 0.00 O ATOM 2620 N ASN 363 23.417 10.358 59.302 1.00 0.00 N ATOM 2621 CA ASN 363 23.721 11.664 59.782 1.00 0.00 C ATOM 2622 CB ASN 363 25.207 12.042 59.616 1.00 0.00 C ATOM 2623 CG ASN 363 25.597 11.946 58.149 1.00 0.00 C ATOM 2624 OD1 ASN 363 24.865 11.395 57.330 1.00 0.00 O ATOM 2625 ND2 ASN 363 26.793 12.492 57.809 1.00 0.00 N ATOM 2626 C ASN 363 22.865 12.690 59.113 1.00 0.00 C ATOM 2627 O ASN 363 23.217 13.295 58.102 1.00 0.00 O ATOM 2628 N PRO 364 21.704 12.844 59.674 1.00 0.00 N ATOM 2629 CA PRO 364 20.798 13.899 59.320 1.00 0.00 C ATOM 2630 CD PRO 364 21.015 11.716 60.276 1.00 0.00 C ATOM 2631 CB PRO 364 19.406 13.439 59.762 1.00 0.00 C ATOM 2632 CG PRO 364 19.674 12.295 60.753 1.00 0.00 C ATOM 2633 C PRO 364 21.261 15.144 60.017 1.00 0.00 C ATOM 2634 O PRO 364 20.681 16.203 59.809 1.00 0.00 O ATOM 2635 N ASN 365 22.277 15.032 60.883 1.00 0.00 N ATOM 2636 CA ASN 365 22.701 16.099 61.744 1.00 0.00 C ATOM 2637 CB ASN 365 23.662 15.629 62.839 1.00 0.00 C ATOM 2638 CG ASN 365 22.873 14.740 63.777 1.00 0.00 C ATOM 2639 OD1 ASN 365 21.810 15.116 64.268 1.00 0.00 O ATOM 2640 ND2 ASN 365 23.404 13.515 64.025 1.00 0.00 N ATOM 2641 C ASN 365 23.389 17.227 61.087 1.00 0.00 C ATOM 2642 O ASN 365 23.308 18.353 61.573 1.00 0.00 O ATOM 2643 N LEU 366 24.135 16.974 60.012 1.00 0.00 N ATOM 2644 CA LEU 366 24.948 18.058 59.589 1.00 0.00 C ATOM 2645 CB LEU 366 25.952 17.709 58.486 1.00 0.00 C ATOM 2646 CG LEU 366 26.828 18.919 58.114 1.00 0.00 C ATOM 2647 CD1 LEU 366 27.610 19.436 59.333 1.00 0.00 C ATOM 2648 CD2 LEU 366 27.750 18.596 56.932 1.00 0.00 C ATOM 2649 C LEU 366 24.140 19.208 59.113 1.00 0.00 C ATOM 2650 O LEU 366 24.422 20.334 59.508 1.00 0.00 O ATOM 2651 N TRP 367 23.088 18.981 58.305 1.00 0.00 N ATOM 2652 CA TRP 367 22.511 20.149 57.716 1.00 0.00 C ATOM 2653 CB TRP 367 22.584 20.118 56.187 1.00 0.00 C ATOM 2654 CG TRP 367 23.938 20.366 55.553 1.00 0.00 C ATOM 2655 CD2 TRP 367 24.799 21.489 55.825 1.00 0.00 C ATOM 2656 CD1 TRP 367 24.584 19.609 54.623 1.00 0.00 C ATOM 2657 NE1 TRP 367 25.771 20.201 54.271 1.00 0.00 N ATOM 2658 CE2 TRP 367 25.921 21.355 55.008 1.00 0.00 C ATOM 2659 CE3 TRP 367 24.674 22.542 56.689 1.00 0.00 C ATOM 2660 CZ2 TRP 367 26.933 22.272 55.035 1.00 0.00 C ATOM 2661 CZ3 TRP 367 25.692 23.472 56.704 1.00 0.00 C ATOM 2662 CH2 TRP 367 26.800 23.341 55.892 1.00 0.00 H ATOM 2663 C TRP 367 21.094 20.355 58.122 1.00 0.00 C ATOM 2664 O TRP 367 20.329 19.413 58.286 1.00 0.00 O ATOM 2665 N LYS 368 20.700 21.634 58.283 1.00 0.00 N ATOM 2666 CA LYS 368 19.360 21.919 58.697 1.00 0.00 C ATOM 2667 CB LYS 368 19.141 23.373 59.154 1.00 0.00 C ATOM 2668 CG LYS 368 19.824 24.434 58.289 1.00 0.00 C ATOM 2669 CD LYS 368 21.350 24.382 58.354 1.00 0.00 C ATOM 2670 CE LYS 368 21.878 24.012 59.743 1.00 0.00 C ATOM 2671 NZ LYS 368 21.206 24.831 60.778 1.00 0.00 N ATOM 2672 C LYS 368 18.408 21.587 57.585 1.00 0.00 C ATOM 2673 O LYS 368 18.728 21.722 56.407 1.00 0.00 O ATOM 2674 N LYS 369 17.210 21.095 57.970 1.00 0.00 N ATOM 2675 CA LYS 369 16.126 20.702 57.112 1.00 0.00 C ATOM 2676 CB LYS 369 15.235 19.655 57.800 1.00 0.00 C ATOM 2677 CG LYS 369 14.840 20.072 59.223 1.00 0.00 C ATOM 2678 CD LYS 369 13.833 19.145 59.910 1.00 0.00 C ATOM 2679 CE LYS 369 13.642 19.457 61.397 1.00 0.00 C ATOM 2680 NZ LYS 369 12.658 18.524 61.990 1.00 0.00 N ATOM 2681 C LYS 369 15.305 21.925 56.831 1.00 0.00 C ATOM 2682 O LYS 369 15.392 22.919 57.546 1.00 0.00 O ATOM 2683 N GLY 370 14.468 21.872 55.777 1.00 0.00 N ATOM 2684 CA GLY 370 13.676 22.995 55.361 1.00 0.00 C ATOM 2685 C GLY 370 12.710 23.355 56.445 1.00 0.00 C ATOM 2686 O GLY 370 12.411 22.573 57.342 1.00 0.00 O ATOM 2687 N THR 371 12.145 24.566 56.341 1.00 0.00 N ATOM 2688 CA THR 371 11.332 25.145 57.365 1.00 0.00 C ATOM 2689 CB THR 371 11.050 26.587 57.062 1.00 0.00 C ATOM 2690 OG1 THR 371 10.474 27.245 58.177 1.00 0.00 O ATOM 2691 CG2 THR 371 10.139 26.661 55.829 1.00 0.00 C ATOM 2692 C THR 371 10.053 24.385 57.560 1.00 0.00 C ATOM 2693 O THR 371 9.950 23.216 57.210 1.00 0.00 O ATOM 2694 N ASN 372 9.047 25.014 58.194 1.00 0.00 N ATOM 2695 CA ASN 372 7.819 24.335 58.482 1.00 0.00 C ATOM 2696 CB ASN 372 6.857 25.154 59.368 1.00 0.00 C ATOM 2697 CG ASN 372 6.471 26.442 58.646 1.00 0.00 C ATOM 2698 OD1 ASN 372 7.313 27.131 58.069 1.00 0.00 O ATOM 2699 ND2 ASN 372 5.154 26.782 58.679 1.00 0.00 N ATOM 2700 C ASN 372 7.134 24.028 57.196 1.00 0.00 C ATOM 2701 O ASN 372 7.275 24.747 56.209 1.00 0.00 O ATOM 2702 N GLY 373 6.413 22.896 57.161 1.00 0.00 N ATOM 2703 CA GLY 373 5.671 22.560 55.985 1.00 0.00 C ATOM 2704 C GLY 373 6.645 22.268 54.900 1.00 0.00 C ATOM 2705 O GLY 373 6.297 22.260 53.722 1.00 0.00 O ATOM 2706 N TYR 374 7.881 21.920 55.275 1.00 0.00 N ATOM 2707 CA TYR 374 8.868 21.745 54.266 1.00 0.00 C ATOM 2708 CB TYR 374 10.290 22.149 54.735 1.00 0.00 C ATOM 2709 CG TYR 374 10.976 21.054 55.477 1.00 0.00 C ATOM 2710 CD1 TYR 374 10.521 20.593 56.691 1.00 0.00 C ATOM 2711 CD2 TYR 374 12.127 20.515 54.955 1.00 0.00 C ATOM 2712 CE1 TYR 374 11.182 19.592 57.358 1.00 0.00 C ATOM 2713 CE2 TYR 374 12.796 19.514 55.615 1.00 0.00 C ATOM 2714 CZ TYR 374 12.320 19.049 56.817 1.00 0.00 C ATOM 2715 OH TYR 374 12.998 18.021 57.502 1.00 0.00 H ATOM 2716 C TYR 374 8.718 20.311 53.941 1.00 0.00 C ATOM 2717 O TYR 374 7.668 19.739 54.231 1.00 0.00 O ATOM 2718 N PRO 375 9.648 19.692 53.325 1.00 0.00 N ATOM 2719 CA PRO 375 9.319 18.408 52.835 1.00 0.00 C ATOM 2720 CD PRO 375 10.536 20.352 52.383 1.00 0.00 C ATOM 2721 CB PRO 375 10.550 17.958 52.079 1.00 0.00 C ATOM 2722 CG PRO 375 11.039 19.259 51.437 1.00 0.00 C ATOM 2723 C PRO 375 8.668 17.290 53.558 1.00 0.00 C ATOM 2724 O PRO 375 7.501 17.017 53.284 1.00 0.00 O ATOM 2725 N ILE 376 9.326 16.677 54.534 1.00 0.00 N ATOM 2726 CA ILE 376 8.718 15.466 54.939 1.00 0.00 C ATOM 2727 CB ILE 376 9.722 14.378 55.123 1.00 0.00 C ATOM 2728 CG2 ILE 376 8.927 13.063 55.119 1.00 0.00 C ATOM 2729 CG1 ILE 376 10.778 14.399 54.006 1.00 0.00 C ATOM 2730 CD1 ILE 376 10.214 14.186 52.608 1.00 0.00 C ATOM 2731 C ILE 376 8.146 15.770 56.284 1.00 0.00 C ATOM 2732 O ILE 376 8.682 16.593 57.025 1.00 0.00 O ATOM 2733 N PHE 377 7.026 15.112 56.630 1.00 0.00 N ATOM 2734 CA PHE 377 6.372 15.271 57.901 1.00 0.00 C ATOM 2735 CB PHE 377 5.198 14.313 58.142 1.00 0.00 C ATOM 2736 CG PHE 377 3.968 14.882 57.538 1.00 0.00 C ATOM 2737 CD1 PHE 377 3.613 14.629 56.235 1.00 0.00 C ATOM 2738 CD2 PHE 377 3.161 15.681 58.312 1.00 0.00 C ATOM 2739 CE1 PHE 377 2.461 15.173 55.714 1.00 0.00 C ATOM 2740 CE2 PHE 377 2.011 16.226 57.797 1.00 0.00 C ATOM 2741 CZ PHE 377 1.660 15.971 56.495 1.00 0.00 C ATOM 2742 C PHE 377 7.350 15.040 59.013 1.00 0.00 C ATOM 2743 O PHE 377 8.538 14.801 58.798 1.00 0.00 O ATOM 2744 N GLN 378 6.849 15.126 60.261 1.00 0.00 N ATOM 2745 CA GLN 378 7.705 15.020 61.409 1.00 0.00 C ATOM 2746 CB GLN 378 6.909 14.977 62.715 1.00 0.00 C ATOM 2747 CG GLN 378 5.980 13.771 62.805 1.00 0.00 C ATOM 2748 CD GLN 378 5.267 13.865 64.140 1.00 0.00 C ATOM 2749 OE1 GLN 378 5.648 14.674 64.984 1.00 0.00 O ATOM 2750 NE2 GLN 378 4.211 13.030 64.341 1.00 0.00 N ATOM 2751 C GLN 378 8.486 13.755 61.288 1.00 0.00 C ATOM 2752 O GLN 378 9.688 13.748 61.546 1.00 0.00 O ATOM 2753 N TRP 379 7.874 12.636 60.879 1.00 0.00 N ATOM 2754 CA TRP 379 8.841 11.619 60.597 1.00 0.00 C ATOM 2755 CB TRP 379 8.466 10.204 61.093 1.00 0.00 C ATOM 2756 CG TRP 379 7.175 9.601 60.611 1.00 0.00 C ATOM 2757 CD2 TRP 379 7.105 8.561 59.627 1.00 0.00 C ATOM 2758 CD1 TRP 379 5.896 9.819 61.036 1.00 0.00 C ATOM 2759 NE1 TRP 379 5.032 8.987 60.365 1.00 0.00 N ATOM 2760 CE2 TRP 379 5.764 8.204 59.498 1.00 0.00 C ATOM 2761 CE3 TRP 379 8.084 7.946 58.902 1.00 0.00 C ATOM 2762 CZ2 TRP 379 5.379 7.219 58.635 1.00 0.00 C ATOM 2763 CZ3 TRP 379 7.691 6.962 58.023 1.00 0.00 C ATOM 2764 CH2 TRP 379 6.364 6.605 57.893 1.00 0.00 H ATOM 2765 C TRP 379 9.072 11.709 59.108 1.00 0.00 C ATOM 2766 O TRP 379 8.268 11.226 58.315 1.00 0.00 O ATOM 2767 N SER 380 10.167 12.428 58.745 1.00 0.00 N ATOM 2768 CA SER 380 10.686 12.874 57.470 1.00 0.00 C ATOM 2769 CB SER 380 11.633 14.075 57.621 1.00 0.00 C ATOM 2770 OG SER 380 12.809 13.677 58.311 1.00 0.00 O ATOM 2771 C SER 380 11.450 11.857 56.676 1.00 0.00 C ATOM 2772 O SER 380 11.708 12.103 55.501 1.00 0.00 O ATOM 2773 N GLU 381 11.866 10.719 57.257 1.00 0.00 N ATOM 2774 CA GLU 381 12.719 9.818 56.531 1.00 0.00 C ATOM 2775 CB GLU 381 12.018 9.092 55.368 1.00 0.00 C ATOM 2776 CG GLU 381 12.922 8.143 54.568 1.00 0.00 C ATOM 2777 CD GLU 381 13.161 6.853 55.344 1.00 0.00 C ATOM 2778 OE1 GLU 381 12.855 6.822 56.565 1.00 0.00 O ATOM 2779 OE2 GLU 381 13.655 5.878 54.717 1.00 0.00 O ATOM 2780 C GLU 381 13.915 10.574 55.966 1.00 0.00 C ATOM 2781 O GLU 381 14.711 11.104 56.781 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 82.14 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 111.79 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 76.81 48.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 104.81 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.53 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 82.87 52.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 75.63 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 82.11 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 93.69 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.60 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 64.28 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 72.29 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 66.67 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 7.49 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.45 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 83.40 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 57.15 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 78.45 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.15 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 92.15 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 92.15 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.93 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.93 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2558 CRMSCA SECONDARY STRUCTURE . . 5.42 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.13 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.80 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.99 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.45 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.20 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.72 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.53 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.98 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.62 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.72 119 99.2 120 CRMSSC BURIED . . . . . . . . 8.97 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.88 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.09 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.16 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.47 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.155 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 4.979 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.268 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 6.567 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.202 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.041 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.336 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 6.455 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.154 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.604 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 7.714 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.319 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 8.198 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.640 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 6.261 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.862 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 6.988 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 10 26 31 31 DISTCA CA (P) 0.00 0.00 6.45 32.26 83.87 31 DISTCA CA (RMS) 0.00 0.00 2.50 3.88 6.34 DISTCA ALL (N) 0 2 12 65 180 253 254 DISTALL ALL (P) 0.00 0.79 4.72 25.59 70.87 254 DISTALL ALL (RMS) 0.00 1.65 2.56 3.94 6.57 DISTALL END of the results output