####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS382_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS382_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 358 - 380 4.88 8.87 LONGEST_CONTINUOUS_SEGMENT: 23 359 - 381 4.70 9.84 LCS_AVERAGE: 66.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 362 - 379 1.62 12.29 LCS_AVERAGE: 39.85 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 363 - 378 0.91 12.92 LCS_AVERAGE: 33.40 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 4 6 6 6 6 10 10 11 12 12 15 16 17 21 22 23 24 24 27 28 LCS_GDT A 352 A 352 6 6 13 4 6 6 6 6 6 6 10 10 12 15 15 17 17 19 20 22 24 27 28 LCS_GDT E 353 E 353 6 6 13 4 6 6 6 6 6 6 6 8 10 12 14 16 17 19 20 22 22 23 25 LCS_GDT E 354 E 354 6 6 13 4 6 6 6 6 6 6 6 7 8 10 14 16 17 19 20 22 24 27 28 LCS_GDT L 355 L 355 6 6 13 4 6 6 6 6 6 6 6 7 9 10 12 14 16 19 20 22 24 27 28 LCS_GDT G 356 G 356 6 6 13 4 6 6 6 6 6 6 6 7 8 9 12 13 15 19 20 21 22 23 24 LCS_GDT N 357 N 357 3 3 13 2 3 3 3 3 4 5 6 8 9 12 13 14 16 19 20 22 24 27 28 LCS_GDT I 358 I 358 3 3 23 3 3 3 3 3 4 5 6 9 12 15 16 17 20 22 23 24 24 27 28 LCS_GDT I 359 I 359 3 3 23 3 3 3 3 3 4 6 8 10 12 15 16 17 21 22 23 24 24 27 28 LCS_GDT V 360 V 360 3 3 23 3 3 3 3 3 4 5 7 9 12 15 16 19 21 22 23 24 24 27 28 LCS_GDT A 361 A 361 3 3 23 3 3 3 4 6 10 14 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT W 362 W 362 3 18 23 3 3 7 11 15 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT N 363 N 363 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT P 364 P 364 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT N 365 N 365 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT L 366 L 366 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT W 367 W 367 16 18 23 3 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT K 368 K 368 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT K 369 K 369 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT G 370 G 370 16 18 23 3 4 13 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT T 371 T 371 16 18 23 3 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT N 372 N 372 16 18 23 6 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT G 373 G 373 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 24 28 LCS_GDT Y 374 Y 374 16 18 23 3 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT P 375 P 375 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT I 376 I 376 16 18 23 3 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT F 377 F 377 16 18 23 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT Q 378 Q 378 16 18 23 3 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT W 379 W 379 5 18 23 3 3 7 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 LCS_GDT S 380 S 380 3 4 23 3 3 3 4 6 7 7 11 12 14 18 19 19 21 22 23 24 24 27 28 LCS_GDT E 381 E 381 3 4 23 0 3 3 4 6 7 7 11 12 13 15 19 19 20 20 20 21 22 24 24 LCS_AVERAGE LCS_A: 46.72 ( 33.40 39.85 66.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 13 15 17 17 17 17 18 18 19 19 19 19 21 22 23 24 24 27 28 GDT PERCENT_AT 25.81 41.94 48.39 54.84 54.84 54.84 54.84 58.06 58.06 61.29 61.29 61.29 61.29 67.74 70.97 74.19 77.42 77.42 87.10 90.32 GDT RMS_LOCAL 0.35 0.56 0.72 1.08 1.08 1.08 1.08 1.62 1.62 2.39 2.39 2.39 2.39 3.82 4.63 4.88 5.23 5.23 6.52 6.63 GDT RMS_ALL_AT 12.55 13.07 12.91 12.98 12.98 12.98 12.98 12.29 12.29 11.28 11.28 11.28 11.28 10.29 8.78 8.87 8.34 8.34 7.54 7.59 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 19.365 0 0.602 0.936 19.940 0.000 0.000 LGA A 352 A 352 21.545 0 0.036 0.045 23.436 0.000 0.000 LGA E 353 E 353 26.434 0 0.068 1.043 31.694 0.000 0.000 LGA E 354 E 354 24.569 0 0.016 0.529 24.852 0.000 0.000 LGA L 355 L 355 20.926 0 0.155 0.267 21.926 0.000 0.000 LGA G 356 G 356 24.124 0 0.460 0.460 24.124 0.000 0.000 LGA N 357 N 357 22.209 0 0.582 0.895 24.844 0.000 0.000 LGA I 358 I 358 18.235 0 0.587 0.599 22.835 0.000 0.000 LGA I 359 I 359 13.201 0 0.575 0.710 15.324 0.000 0.000 LGA V 360 V 360 12.911 0 0.654 0.670 16.400 0.000 0.000 LGA A 361 A 361 8.825 0 0.686 0.626 10.605 5.000 4.286 LGA W 362 W 362 4.711 0 0.528 0.493 10.311 39.524 22.075 LGA N 363 N 363 0.495 0 0.308 1.468 5.131 90.833 67.500 LGA P 364 P 364 0.514 0 0.136 0.157 1.616 90.476 85.374 LGA N 365 N 365 0.734 0 0.155 0.953 2.248 86.071 84.048 LGA L 366 L 366 0.581 0 0.062 1.433 4.184 90.595 75.833 LGA W 367 W 367 1.214 0 0.092 1.237 10.183 88.214 42.007 LGA K 368 K 368 0.289 0 0.042 0.688 1.906 95.238 87.672 LGA K 369 K 369 0.477 0 0.074 0.965 5.749 95.238 77.037 LGA G 370 G 370 2.198 0 0.117 0.117 2.198 77.381 77.381 LGA T 371 T 371 1.195 0 0.271 0.813 3.892 75.357 70.136 LGA N 372 N 372 0.888 0 0.056 1.042 3.014 92.857 81.131 LGA G 373 G 373 0.450 0 0.202 0.202 0.882 95.238 95.238 LGA Y 374 Y 374 1.125 0 0.131 0.203 3.937 83.690 66.230 LGA P 375 P 375 0.536 0 0.100 0.271 2.062 86.071 84.286 LGA I 376 I 376 1.103 0 0.130 0.982 3.490 88.214 75.655 LGA F 377 F 377 1.072 0 0.110 1.126 3.400 83.690 75.714 LGA Q 378 Q 378 1.530 0 0.610 1.311 6.034 59.405 55.079 LGA W 379 W 379 2.935 0 0.625 1.099 5.710 44.405 51.395 LGA S 380 S 380 9.649 0 0.613 0.696 11.617 2.619 1.746 LGA E 381 E 381 11.776 2 0.052 0.583 18.033 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 123 99.19 254 252 99.21 31 SUMMARY(RMSD_GDC): 7.480 7.458 7.895 47.423 41.285 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 18 1.62 57.258 52.550 1.044 LGA_LOCAL RMSD: 1.624 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.294 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.480 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.212283 * X + 0.941801 * Y + 0.260665 * Z + 25.580952 Y_new = -0.788576 * X + -0.322637 * Y + 0.523501 * Z + 43.057148 Z_new = 0.577134 * X + -0.094424 * Y + 0.811172 * Z + 72.713799 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.833760 -0.615215 -0.115883 [DEG: -105.0667 -35.2492 -6.6396 ] ZXZ: 2.679605 0.624642 1.732968 [DEG: 153.5301 35.7894 99.2918 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS382_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS382_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 18 1.62 52.550 7.48 REMARK ---------------------------------------------------------- MOLECULE T0537TS382_1-D2 USER MOD reduce.3.15.091106 removed 2680 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFR REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyh_B ATOM 4971 N SER 351 19.836 7.892 39.685 1.00 99.99 N ATOM 4973 CA SER 351 19.682 9.224 39.096 1.00 99.99 C ATOM 4975 CB SER 351 18.757 10.159 39.919 1.00 99.99 C ATOM 4978 OG SER 351 17.454 9.600 40.075 1.00 99.99 O ATOM 4980 C SER 351 21.003 9.962 38.944 1.00 99.99 C ATOM 4981 O SER 351 21.281 10.585 37.925 1.00 99.99 O ATOM 4982 N ALA 352 21.880 9.889 39.957 1.00 99.99 N ATOM 4984 CA ALA 352 23.221 10.424 39.914 1.00 99.99 C ATOM 4986 CB ALA 352 23.821 10.358 41.327 1.00 99.99 C ATOM 4990 C ALA 352 24.128 9.725 38.904 1.00 99.99 C ATOM 4991 O ALA 352 24.802 10.384 38.119 1.00 99.99 O ATOM 4992 N GLU 353 24.121 8.381 38.877 1.00 99.99 N ATOM 4994 CA GLU 353 24.784 7.543 37.888 1.00 99.99 C ATOM 4996 CB GLU 353 24.384 6.084 38.216 1.00 99.99 C ATOM 4999 CG GLU 353 24.923 4.950 37.306 1.00 99.99 C ATOM 5002 CD GLU 353 24.119 3.679 37.530 1.00 99.99 C ATOM 5003 OE1 GLU 353 23.440 3.554 38.587 1.00 99.99 O ATOM 5004 OE2 GLU 353 24.023 2.844 36.593 1.00 99.99 O ATOM 5005 C GLU 353 24.409 7.886 36.442 1.00 99.99 C ATOM 5006 O GLU 353 25.259 8.248 35.630 1.00 99.99 O ATOM 5007 N GLU 354 23.110 7.809 36.103 1.00 99.99 N ATOM 5009 CA GLU 354 22.593 7.994 34.760 1.00 99.99 C ATOM 5011 CB GLU 354 21.183 7.354 34.669 1.00 99.99 C ATOM 5014 CG GLU 354 21.230 5.812 34.859 1.00 99.99 C ATOM 5017 CD GLU 354 19.857 5.149 34.915 1.00 99.99 C ATOM 5018 OE1 GLU 354 19.618 4.408 35.910 1.00 99.99 O ATOM 5019 OE2 GLU 354 19.062 5.309 33.963 1.00 99.99 O ATOM 5020 C GLU 354 22.576 9.449 34.290 1.00 99.99 C ATOM 5021 O GLU 354 22.909 9.749 33.146 1.00 99.99 O ATOM 5022 N LEU 355 22.198 10.418 35.151 1.00 99.99 N ATOM 5024 CA LEU 355 22.125 11.821 34.755 1.00 99.99 C ATOM 5026 CB LEU 355 20.976 12.566 35.487 1.00 99.99 C ATOM 5029 CG LEU 355 19.583 11.917 35.335 1.00 99.99 C ATOM 5031 CD1 LEU 355 18.556 12.655 36.206 1.00 99.99 C ATOM 5035 CD2 LEU 355 19.110 11.876 33.874 1.00 99.99 C ATOM 5039 C LEU 355 23.423 12.594 34.971 1.00 99.99 C ATOM 5040 O LEU 355 23.559 13.724 34.511 1.00 99.99 O ATOM 5041 N GLY 356 24.418 12.019 35.679 1.00 99.99 N ATOM 5043 CA GLY 356 25.748 12.617 35.829 1.00 99.99 C ATOM 5046 C GLY 356 25.900 13.549 37.005 1.00 99.99 C ATOM 5047 O GLY 356 26.339 14.686 36.871 1.00 99.99 O ATOM 5048 N ASN 357 25.561 13.080 38.216 1.00 99.99 N ATOM 5050 CA ASN 357 25.724 13.834 39.451 1.00 99.99 C ATOM 5052 CB ASN 357 24.376 14.183 40.144 1.00 99.99 C ATOM 5055 CG ASN 357 23.541 15.196 39.366 1.00 99.99 C ATOM 5056 OD1 ASN 357 23.282 16.294 39.857 1.00 99.99 O ATOM 5057 ND2 ASN 357 23.071 14.844 38.153 1.00 99.99 N ATOM 5060 C ASN 357 26.563 12.996 40.406 1.00 99.99 C ATOM 5061 O ASN 357 26.764 11.802 40.204 1.00 99.99 O ATOM 5062 N ILE 358 27.092 13.593 41.487 1.00 99.99 N ATOM 5064 CA ILE 358 27.921 12.870 42.443 1.00 99.99 C ATOM 5066 CB ILE 358 29.220 13.634 42.719 1.00 99.99 C ATOM 5068 CG2 ILE 358 30.042 12.951 43.840 1.00 99.99 C ATOM 5072 CG1 ILE 358 30.048 13.759 41.414 1.00 99.99 C ATOM 5075 CD1 ILE 358 31.274 14.674 41.539 1.00 99.99 C ATOM 5079 C ILE 358 27.130 12.596 43.721 1.00 99.99 C ATOM 5080 O ILE 358 26.464 13.467 44.271 1.00 99.99 O ATOM 5081 N ILE 359 27.172 11.360 44.251 1.00 99.99 N ATOM 5083 CA ILE 359 26.508 11.028 45.507 1.00 99.99 C ATOM 5085 CB ILE 359 26.198 9.531 45.604 1.00 99.99 C ATOM 5087 CG2 ILE 359 25.772 9.102 47.029 1.00 99.99 C ATOM 5091 CG1 ILE 359 25.111 9.138 44.575 1.00 99.99 C ATOM 5094 CD1 ILE 359 23.718 9.702 44.891 1.00 99.99 C ATOM 5098 C ILE 359 27.316 11.485 46.710 1.00 99.99 C ATOM 5099 O ILE 359 28.494 11.162 46.861 1.00 99.99 O ATOM 5100 N VAL 360 26.677 12.257 47.607 1.00 99.99 N ATOM 5102 CA VAL 360 27.191 12.586 48.922 1.00 99.99 C ATOM 5104 CB VAL 360 27.709 14.025 49.028 1.00 99.99 C ATOM 5106 CG1 VAL 360 28.238 14.332 50.442 1.00 99.99 C ATOM 5110 CG2 VAL 360 28.852 14.229 48.017 1.00 99.99 C ATOM 5114 C VAL 360 26.007 12.368 49.844 1.00 99.99 C ATOM 5115 O VAL 360 24.871 12.573 49.430 1.00 99.99 O ATOM 5116 N ALA 361 26.224 11.913 51.091 1.00 99.99 N ATOM 5118 CA ALA 361 25.174 11.812 52.082 1.00 99.99 C ATOM 5120 CB ALA 361 25.171 10.419 52.744 1.00 99.99 C ATOM 5124 C ALA 361 25.364 12.897 53.130 1.00 99.99 C ATOM 5125 O ALA 361 26.485 13.306 53.441 1.00 99.99 O ATOM 5126 N TRP 362 24.260 13.399 53.692 1.00 99.99 N ATOM 5128 CA TRP 362 24.260 14.481 54.651 1.00 99.99 C ATOM 5130 CB TRP 362 23.762 15.808 54.021 1.00 99.99 C ATOM 5133 CG TRP 362 24.608 16.321 52.871 1.00 99.99 C ATOM 5134 CD1 TRP 362 25.963 16.497 52.794 1.00 99.99 C ATOM 5136 NE1 TRP 362 26.316 16.948 51.539 1.00 99.99 N ATOM 5138 CE2 TRP 362 25.176 17.027 50.771 1.00 99.99 C ATOM 5139 CD2 TRP 362 24.080 16.662 51.580 1.00 99.99 C ATOM 5140 CE3 TRP 362 22.783 16.653 51.076 1.00 99.99 C ATOM 5142 CZ3 TRP 362 22.604 16.990 49.729 1.00 99.99 C ATOM 5144 CZ2 TRP 362 24.992 17.365 49.438 1.00 99.99 C ATOM 5146 CH2 TRP 362 23.691 17.334 48.918 1.00 99.99 H ATOM 5148 C TRP 362 23.354 14.103 55.799 1.00 99.99 C ATOM 5149 O TRP 362 22.251 14.622 55.940 1.00 99.99 O ATOM 5150 N ASN 363 23.818 13.194 56.674 1.00 99.99 N ATOM 5152 CA ASN 363 23.002 12.562 57.703 1.00 99.99 C ATOM 5154 CB ASN 363 23.811 11.426 58.391 1.00 99.99 C ATOM 5157 CG ASN 363 24.569 10.547 57.396 1.00 99.99 C ATOM 5158 OD1 ASN 363 25.774 10.352 57.555 1.00 99.99 O ATOM 5159 ND2 ASN 363 23.903 10.008 56.360 1.00 99.99 N ATOM 5162 C ASN 363 22.465 13.548 58.761 1.00 99.99 C ATOM 5163 O ASN 363 22.907 14.694 58.744 1.00 99.99 O ATOM 5164 N PRO 364 21.557 13.226 59.701 1.00 99.99 N ATOM 5165 CD PRO 364 20.696 12.040 59.548 1.00 99.99 C ATOM 5168 CA PRO 364 20.924 14.209 60.613 1.00 99.99 C ATOM 5170 CB PRO 364 19.907 13.355 61.370 1.00 99.99 C ATOM 5173 CG PRO 364 19.415 12.376 60.309 1.00 99.99 C ATOM 5176 C PRO 364 21.777 15.031 61.580 1.00 99.99 C ATOM 5177 O PRO 364 21.226 15.721 62.437 1.00 99.99 O ATOM 5178 N ASN 365 23.109 15.019 61.441 1.00 99.99 N ATOM 5180 CA ASN 365 24.001 16.065 61.897 1.00 99.99 C ATOM 5182 CB ASN 365 25.477 15.576 61.874 1.00 99.99 C ATOM 5185 CG ASN 365 25.602 14.183 62.484 1.00 99.99 C ATOM 5186 OD1 ASN 365 25.322 13.181 61.821 1.00 99.99 O ATOM 5187 ND2 ASN 365 26.026 14.097 63.757 1.00 99.99 N ATOM 5190 C ASN 365 23.879 17.310 61.009 1.00 99.99 C ATOM 5191 O ASN 365 23.798 18.442 61.474 1.00 99.99 O ATOM 5192 N LEU 366 23.848 17.084 59.683 1.00 99.99 N ATOM 5194 CA LEU 366 23.747 18.079 58.636 1.00 99.99 C ATOM 5196 CB LEU 366 24.655 17.683 57.444 1.00 99.99 C ATOM 5199 CG LEU 366 26.156 17.561 57.786 1.00 99.99 C ATOM 5201 CD1 LEU 366 26.940 17.046 56.571 1.00 99.99 C ATOM 5205 CD2 LEU 366 26.752 18.893 58.262 1.00 99.99 C ATOM 5209 C LEU 366 22.312 18.230 58.134 1.00 99.99 C ATOM 5210 O LEU 366 21.855 19.329 57.836 1.00 99.99 O ATOM 5211 N TRP 367 21.534 17.137 58.013 1.00 99.99 N ATOM 5213 CA TRP 367 20.131 17.211 57.625 1.00 99.99 C ATOM 5215 CB TRP 367 19.575 15.799 57.293 1.00 99.99 C ATOM 5218 CG TRP 367 18.122 15.702 56.883 1.00 99.99 C ATOM 5219 CD1 TRP 367 17.605 15.756 55.625 1.00 99.99 C ATOM 5221 NE1 TRP 367 16.242 15.595 55.670 1.00 99.99 N ATOM 5223 CE2 TRP 367 15.856 15.416 56.978 1.00 99.99 C ATOM 5224 CD2 TRP 367 17.009 15.507 57.777 1.00 99.99 C ATOM 5225 CE3 TRP 367 16.930 15.405 59.167 1.00 99.99 C ATOM 5227 CZ3 TRP 367 15.661 15.243 59.743 1.00 99.99 C ATOM 5229 CZ2 TRP 367 14.606 15.192 57.543 1.00 99.99 C ATOM 5231 CH2 TRP 367 14.514 15.124 58.942 1.00 99.99 H ATOM 5233 C TRP 367 19.251 17.885 58.678 1.00 99.99 C ATOM 5234 O TRP 367 19.277 17.546 59.861 1.00 99.99 O ATOM 5235 N LYS 368 18.440 18.871 58.254 1.00 99.99 N ATOM 5237 CA LYS 368 17.628 19.649 59.157 1.00 99.99 C ATOM 5239 CB LYS 368 18.429 20.922 59.520 1.00 99.99 C ATOM 5242 CG LYS 368 17.801 21.844 60.568 1.00 99.99 C ATOM 5245 CD LYS 368 18.779 22.947 60.973 1.00 99.99 C ATOM 5248 CE LYS 368 18.242 23.858 62.072 1.00 99.99 C ATOM 5251 NZ LYS 368 19.292 24.816 62.431 1.00 99.99 N ATOM 5255 C LYS 368 16.266 19.982 58.548 1.00 99.99 C ATOM 5256 O LYS 368 16.062 19.995 57.332 1.00 99.99 O ATOM 5257 N LYS 369 15.265 20.242 59.402 1.00 99.99 N ATOM 5259 CA LYS 369 13.946 20.704 59.021 1.00 99.99 C ATOM 5261 CB LYS 369 12.883 19.658 59.428 1.00 99.99 C ATOM 5264 CG LYS 369 12.786 18.471 58.460 1.00 99.99 C ATOM 5267 CD LYS 369 12.009 18.840 57.186 1.00 99.99 C ATOM 5270 CE LYS 369 11.956 17.728 56.141 1.00 99.99 C ATOM 5273 NZ LYS 369 13.310 17.492 55.641 1.00 99.99 N ATOM 5277 C LYS 369 13.628 22.033 59.683 1.00 99.99 C ATOM 5278 O LYS 369 14.251 22.446 60.658 1.00 99.99 O ATOM 5279 N GLY 370 12.626 22.758 59.150 1.00 99.99 N ATOM 5281 CA GLY 370 12.221 24.042 59.701 1.00 99.99 C ATOM 5284 C GLY 370 11.018 24.566 58.972 1.00 99.99 C ATOM 5285 O GLY 370 10.419 23.867 58.156 1.00 99.99 O ATOM 5286 N THR 371 10.632 25.824 59.247 1.00 99.99 N ATOM 5288 CA THR 371 9.329 26.436 58.960 1.00 99.99 C ATOM 5290 CB THR 371 9.175 27.781 59.691 1.00 99.99 C ATOM 5292 OG1 THR 371 10.029 27.830 60.828 1.00 99.99 O ATOM 5294 CG2 THR 371 7.748 27.943 60.230 1.00 99.99 C ATOM 5298 C THR 371 8.934 26.664 57.499 1.00 99.99 C ATOM 5299 O THR 371 8.080 27.488 57.191 1.00 99.99 O ATOM 5300 N ASN 372 9.515 25.944 56.527 1.00 99.99 N ATOM 5302 CA ASN 372 9.025 25.921 55.152 1.00 99.99 C ATOM 5304 CB ASN 372 10.049 26.506 54.135 1.00 99.99 C ATOM 5307 CG ASN 372 10.296 28.016 54.207 1.00 99.99 C ATOM 5308 OD1 ASN 372 11.124 28.510 53.439 1.00 99.99 O ATOM 5309 ND2 ASN 372 9.629 28.766 55.099 1.00 99.99 N ATOM 5312 C ASN 372 8.717 24.489 54.719 1.00 99.99 C ATOM 5313 O ASN 372 8.420 24.235 53.554 1.00 99.99 O ATOM 5314 N GLY 373 8.796 23.491 55.628 1.00 99.99 N ATOM 5316 CA GLY 373 8.483 22.093 55.303 1.00 99.99 C ATOM 5319 C GLY 373 9.616 21.363 54.627 1.00 99.99 C ATOM 5320 O GLY 373 10.126 20.362 55.121 1.00 99.99 O ATOM 5321 N TYR 374 10.052 21.868 53.464 1.00 99.99 N ATOM 5323 CA TYR 374 11.218 21.398 52.742 1.00 99.99 C ATOM 5325 CB TYR 374 11.305 22.128 51.374 1.00 99.99 C ATOM 5328 CG TYR 374 10.346 21.547 50.372 1.00 99.99 C ATOM 5329 CD1 TYR 374 9.301 22.320 49.836 1.00 99.99 C ATOM 5331 CE1 TYR 374 8.454 21.786 48.852 1.00 99.99 C ATOM 5333 CZ TYR 374 8.645 20.478 48.396 1.00 99.99 C ATOM 5334 OH TYR 374 7.799 19.950 47.403 1.00 99.99 H ATOM 5336 CD2 TYR 374 10.524 20.233 49.904 1.00 99.99 C ATOM 5338 CE2 TYR 374 9.678 19.698 48.920 1.00 99.99 C ATOM 5340 C TYR 374 12.521 21.639 53.529 1.00 99.99 C ATOM 5341 O TYR 374 12.566 22.558 54.352 1.00 99.99 O ATOM 5342 N PRO 375 13.588 20.855 53.351 1.00 99.99 N ATOM 5343 CD PRO 375 13.650 19.750 52.389 1.00 99.99 C ATOM 5346 CA PRO 375 14.702 20.814 54.301 1.00 99.99 C ATOM 5348 CB PRO 375 15.576 19.633 53.821 1.00 99.99 C ATOM 5351 CG PRO 375 15.112 19.328 52.395 1.00 99.99 C ATOM 5354 C PRO 375 15.544 22.074 54.409 1.00 99.99 C ATOM 5355 O PRO 375 15.366 23.048 53.672 1.00 99.99 O ATOM 5356 N ILE 376 16.469 22.045 55.378 1.00 99.99 N ATOM 5358 CA ILE 376 17.530 23.003 55.596 1.00 99.99 C ATOM 5360 CB ILE 376 17.326 23.795 56.899 1.00 99.99 C ATOM 5362 CG2 ILE 376 18.471 24.808 57.129 1.00 99.99 C ATOM 5366 CG1 ILE 376 15.964 24.526 56.914 1.00 99.99 C ATOM 5369 CD1 ILE 376 15.614 25.096 58.292 1.00 99.99 C ATOM 5373 C ILE 376 18.798 22.156 55.674 1.00 99.99 C ATOM 5374 O ILE 376 18.757 20.998 56.087 1.00 99.99 O ATOM 5375 N PHE 377 19.957 22.693 55.264 1.00 99.99 N ATOM 5377 CA PHE 377 21.255 22.116 55.546 1.00 99.99 C ATOM 5379 CB PHE 377 22.183 22.381 54.329 1.00 99.99 C ATOM 5382 CG PHE 377 23.563 21.807 54.478 1.00 99.99 C ATOM 5383 CD1 PHE 377 23.809 20.453 54.203 1.00 99.99 C ATOM 5385 CE1 PHE 377 25.104 19.933 54.314 1.00 99.99 C ATOM 5387 CZ PHE 377 26.161 20.762 54.713 1.00 99.99 C ATOM 5389 CD2 PHE 377 24.628 22.632 54.873 1.00 99.99 C ATOM 5391 CE2 PHE 377 25.923 22.114 54.995 1.00 99.99 C ATOM 5393 C PHE 377 21.803 22.790 56.798 1.00 99.99 C ATOM 5394 O PHE 377 21.881 24.011 56.872 1.00 99.99 O ATOM 5395 N GLN 378 22.193 22.026 57.825 1.00 99.99 N ATOM 5397 CA GLN 378 22.879 22.562 58.979 1.00 99.99 C ATOM 5399 CB GLN 378 22.636 21.691 60.237 1.00 99.99 C ATOM 5402 CG GLN 378 23.399 22.133 61.513 1.00 99.99 C ATOM 5405 CD GLN 378 22.956 23.506 62.018 1.00 99.99 C ATOM 5406 OE1 GLN 378 21.792 23.729 62.357 1.00 99.99 O ATOM 5407 NE2 GLN 378 23.896 24.468 62.108 1.00 99.99 N ATOM 5410 C GLN 378 24.371 22.633 58.711 1.00 99.99 C ATOM 5411 O GLN 378 25.050 21.625 58.538 1.00 99.99 O ATOM 5412 N TRP 379 24.934 23.851 58.700 1.00 99.99 N ATOM 5414 CA TRP 379 26.364 24.051 58.636 1.00 99.99 C ATOM 5416 CB TRP 379 26.689 25.520 58.261 1.00 99.99 C ATOM 5419 CG TRP 379 26.445 25.883 56.801 1.00 99.99 C ATOM 5420 CD1 TRP 379 27.384 26.035 55.817 1.00 99.99 C ATOM 5422 NE1 TRP 379 26.782 26.446 54.643 1.00 99.99 N ATOM 5424 CE2 TRP 379 25.433 26.570 54.861 1.00 99.99 C ATOM 5425 CD2 TRP 379 25.177 26.228 56.207 1.00 99.99 C ATOM 5426 CE3 TRP 379 23.886 26.298 56.726 1.00 99.99 C ATOM 5428 CZ3 TRP 379 22.852 26.715 55.875 1.00 99.99 C ATOM 5430 CZ2 TRP 379 24.407 26.973 54.019 1.00 99.99 C ATOM 5432 CH2 TRP 379 23.106 27.043 54.537 1.00 99.99 H ATOM 5434 C TRP 379 27.022 23.698 59.971 1.00 99.99 C ATOM 5435 O TRP 379 26.522 24.030 61.048 1.00 99.99 O ATOM 5436 N SER 380 28.165 22.993 59.932 1.00 99.99 N ATOM 5438 CA SER 380 28.964 22.670 61.108 1.00 99.99 C ATOM 5440 CB SER 380 29.828 21.400 60.893 1.00 99.99 C ATOM 5443 OG SER 380 30.551 21.444 59.660 1.00 99.99 O ATOM 5445 C SER 380 29.870 23.827 61.479 1.00 99.99 C ATOM 5446 O SER 380 30.040 24.142 62.658 1.00 99.99 O ATOM 5447 C GLU 381 30.537 26.432 59.134 1.00 99.99 C ATOM 5448 OT1 GLU 381 30.213 25.649 58.193 0.00 99.99 O ATOM 5449 OT2 GLU 381 30.385 27.681 59.067 0.00 99.99 O ATOM 5450 N GLU 381 30.419 24.489 60.451 1.00 99.99 N ATOM 5452 CA GLU 381 31.028 25.792 60.466 1.00 99.99 C ATOM 5454 CB GLU 381 32.566 25.732 60.605 1.00 99.99 C ATOM 5457 CG GLU 381 33.218 27.129 60.777 1.00 99.99 C ATOM 5460 CD GLU 381 34.640 27.115 61.337 1.00 99.99 C ATOM 5461 OE1 GLU 381 35.141 26.032 61.729 1.00 99.99 O ATOM 5462 OE2 GLU 381 35.224 28.230 61.404 1.00 99.99 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 252 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.42 53.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 97.29 40.9 22 100.0 22 ARMSMC SURFACE . . . . . . . . 69.80 58.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 103.38 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.12 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 83.72 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 10.79 100.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 86.86 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 24.35 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.01 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 55.06 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 63.76 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 75.32 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 101.03 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 41.06 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 43.53 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 43.81 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 41.06 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.84 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 79.84 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 79.84 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.48 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.48 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2413 CRMSCA SECONDARY STRUCTURE . . 8.62 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.31 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.32 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.44 151 99.3 152 CRMSMC SECONDARY STRUCTURE . . 8.62 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.34 128 99.2 129 CRMSMC BURIED . . . . . . . . 7.98 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.35 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 8.43 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.64 41 100.0 41 CRMSSC SURFACE . . . . . . . . 8.39 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.77 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.93 252 99.2 254 CRMSALL SECONDARY STRUCTURE . . 8.67 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.92 222 99.1 224 CRMSALL BURIED . . . . . . . . 8.00 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.097 0.872 0.881 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 92.059 0.855 0.866 11 100.0 11 ERRCA SURFACE . . . . . . . . 93.267 0.875 0.884 26 100.0 26 ERRCA BURIED . . . . . . . . 92.217 0.857 0.868 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.136 0.873 0.882 151 99.3 152 ERRMC SECONDARY STRUCTURE . . 92.006 0.854 0.865 54 100.0 54 ERRMC SURFACE . . . . . . . . 93.251 0.875 0.883 128 99.2 129 ERRMC BURIED . . . . . . . . 92.500 0.862 0.872 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.355 0.860 0.870 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 92.294 0.859 0.870 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 91.845 0.851 0.862 41 100.0 41 ERRSC SURFACE . . . . . . . . 92.363 0.860 0.871 119 99.2 120 ERRSC BURIED . . . . . . . . 92.260 0.857 0.866 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.731 0.866 0.876 252 99.2 254 ERRALL SECONDARY STRUCTURE . . 91.905 0.852 0.863 85 100.0 85 ERRALL SURFACE . . . . . . . . 92.779 0.867 0.877 222 99.1 224 ERRALL BURIED . . . . . . . . 92.378 0.859 0.869 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 7 26 31 31 DISTCA CA (P) 0.00 3.23 9.68 22.58 83.87 31 DISTCA CA (RMS) 0.00 1.37 2.46 3.41 6.41 DISTCA ALL (N) 0 3 18 70 204 252 254 DISTALL ALL (P) 0.00 1.18 7.09 27.56 80.31 254 DISTALL ALL (RMS) 0.00 1.73 2.58 3.77 6.47 DISTALL END of the results output