####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS380_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS380_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.90 18.85 LCS_AVERAGE: 49.74 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.71 26.45 LCS_AVERAGE: 19.46 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.97 26.54 LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.87 26.39 LONGEST_CONTINUOUS_SEGMENT: 5 374 - 378 0.91 26.35 LCS_AVERAGE: 12.90 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 17 3 3 3 3 6 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT A 352 A 352 4 5 17 3 4 4 5 6 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT E 353 E 353 4 5 17 3 4 4 5 5 6 7 10 12 12 13 14 15 15 16 17 17 18 18 18 LCS_GDT E 354 E 354 4 5 17 3 4 4 5 5 6 7 9 11 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT L 355 L 355 4 5 17 3 4 4 5 5 7 8 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT G 356 G 356 3 5 17 3 4 4 5 8 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT N 357 N 357 3 4 17 3 3 4 5 8 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT I 358 I 358 3 4 17 3 3 4 4 8 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT I 359 I 359 4 5 17 3 4 4 5 8 8 9 10 12 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT V 360 V 360 4 5 17 3 4 4 4 5 6 8 9 10 12 13 13 14 15 16 17 17 18 19 19 LCS_GDT A 361 A 361 4 5 17 3 4 4 4 5 6 8 10 11 12 13 14 15 15 16 17 17 18 19 19 LCS_GDT W 362 W 362 4 5 17 3 4 4 5 8 8 9 11 12 13 13 14 15 15 16 17 17 18 19 20 LCS_GDT N 363 N 363 3 5 17 3 3 4 5 8 8 9 11 12 13 13 14 15 15 16 17 17 18 19 20 LCS_GDT P 364 P 364 3 5 17 3 3 4 4 8 8 9 11 12 13 13 14 15 15 16 17 17 18 19 20 LCS_GDT N 365 N 365 3 7 17 3 3 4 5 8 8 10 11 12 13 13 14 15 15 16 17 17 18 19 20 LCS_GDT L 366 L 366 4 7 17 3 4 5 5 6 8 10 11 12 13 13 14 15 15 16 17 17 18 19 20 LCS_GDT W 367 W 367 4 7 17 3 4 5 6 6 8 10 11 12 13 13 13 13 14 16 17 17 18 19 20 LCS_GDT K 368 K 368 4 7 15 3 4 5 6 6 8 10 11 12 13 13 13 13 14 14 14 17 18 19 20 LCS_GDT K 369 K 369 4 7 15 3 4 5 6 6 8 10 11 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT G 370 G 370 4 7 15 3 4 5 6 6 8 10 11 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT T 371 T 371 4 7 15 3 4 4 6 6 8 10 11 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT N 372 N 372 5 8 15 3 4 4 6 8 8 10 11 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT G 373 G 373 5 8 15 3 4 5 6 8 8 10 10 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT Y 374 Y 374 5 8 15 3 5 5 6 8 8 10 10 12 13 13 13 13 14 14 14 16 17 19 20 LCS_GDT P 375 P 375 5 8 15 3 5 5 6 8 8 8 8 8 9 9 9 10 10 13 14 16 17 19 20 LCS_GDT I 376 I 376 5 8 14 3 4 5 6 8 8 8 8 8 9 9 10 11 13 13 14 16 17 19 20 LCS_GDT F 377 F 377 5 8 11 3 5 5 6 8 8 8 8 8 9 9 9 10 10 11 12 15 17 19 20 LCS_GDT Q 378 Q 378 5 8 11 3 5 5 6 8 8 8 8 8 9 9 9 10 10 11 12 14 17 19 20 LCS_GDT W 379 W 379 4 8 11 3 5 5 6 8 8 8 8 8 9 9 10 10 13 13 16 17 18 19 20 LCS_GDT S 380 S 380 4 4 11 3 4 4 4 4 4 5 6 7 8 9 9 10 10 11 12 16 18 19 20 LCS_GDT E 381 E 381 4 4 11 0 4 4 4 4 4 5 6 7 8 8 9 10 10 13 16 17 18 19 20 LCS_AVERAGE LCS_A: 27.37 ( 12.90 19.46 49.74 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 6 8 8 10 11 12 13 13 14 15 15 16 17 17 18 19 20 GDT PERCENT_AT 9.68 16.13 16.13 19.35 25.81 25.81 32.26 35.48 38.71 41.94 41.94 45.16 48.39 48.39 51.61 54.84 54.84 58.06 61.29 64.52 GDT RMS_LOCAL 0.03 0.68 0.68 1.01 1.71 1.71 2.49 3.00 3.02 3.26 3.26 3.69 4.10 4.10 4.41 4.90 4.90 5.44 6.69 7.51 GDT RMS_ALL_AT 21.44 25.41 25.41 25.39 26.45 26.45 20.82 19.30 21.74 19.60 19.60 21.66 20.18 20.18 19.83 18.85 18.85 18.20 15.09 18.22 # Checking swapping # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 36.331 0 0.320 0.620 39.276 0.000 0.000 LGA A 352 A 352 33.144 0 0.645 0.628 34.311 0.000 0.000 LGA E 353 E 353 35.579 0 0.065 1.315 41.319 0.000 0.000 LGA E 354 E 354 30.806 0 0.112 1.734 32.862 0.000 0.000 LGA L 355 L 355 24.459 0 0.573 0.994 27.145 0.000 0.000 LGA G 356 G 356 24.331 0 0.181 0.181 24.631 0.000 0.000 LGA N 357 N 357 20.077 0 0.497 0.596 22.846 0.000 0.000 LGA I 358 I 358 17.646 0 0.093 0.239 22.539 0.000 0.000 LGA I 359 I 359 14.650 0 0.572 0.747 19.937 0.000 0.000 LGA V 360 V 360 13.185 0 0.083 0.154 17.297 0.119 0.068 LGA A 361 A 361 8.956 0 0.507 0.471 11.009 8.333 6.762 LGA W 362 W 362 3.748 0 0.126 0.233 6.462 50.833 33.810 LGA N 363 N 363 3.648 0 0.164 0.959 7.283 42.024 32.143 LGA P 364 P 364 3.510 0 0.664 0.774 4.707 50.238 48.639 LGA N 365 N 365 1.860 0 0.390 1.200 5.159 68.810 56.845 LGA L 366 L 366 3.338 0 0.172 0.865 9.023 55.357 33.690 LGA W 367 W 367 3.839 0 0.296 0.455 12.122 46.905 16.122 LGA K 368 K 368 3.063 0 0.120 1.024 5.521 59.167 50.952 LGA K 369 K 369 4.126 0 0.544 0.630 14.806 55.119 27.407 LGA G 370 G 370 1.053 0 0.539 0.539 2.805 75.476 75.476 LGA T 371 T 371 1.000 0 0.565 0.534 2.409 79.524 76.735 LGA N 372 N 372 1.319 0 0.540 1.154 3.927 75.119 65.357 LGA G 373 G 373 4.093 0 0.128 0.128 5.480 36.190 36.190 LGA Y 374 Y 374 6.014 0 0.316 1.208 9.276 12.381 17.738 LGA P 375 P 375 12.188 0 0.073 0.465 13.545 0.119 0.136 LGA I 376 I 376 15.605 0 0.218 1.214 18.176 0.000 0.000 LGA F 377 F 377 21.950 0 0.645 0.819 24.441 0.000 0.000 LGA Q 378 Q 378 24.011 0 0.033 1.287 27.084 0.000 0.000 LGA W 379 W 379 29.288 0 0.431 1.211 32.319 0.000 0.000 LGA S 380 S 380 29.813 0 0.509 0.961 33.265 0.000 0.000 LGA E 381 E 381 34.521 0 0.137 0.737 36.907 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 11.825 11.822 12.310 23.088 18.647 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 3.00 31.452 28.988 0.354 LGA_LOCAL RMSD: 3.004 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.300 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.825 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.365199 * X + 0.657539 * Y + 0.658993 * Z + -45.231205 Y_new = 0.691486 * X + -0.282345 * Y + 0.664927 * Z + -41.783958 Z_new = 0.623279 * X + 0.698515 * Y + -0.351567 * Z + -25.643593 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.056699 -0.672929 2.037085 [DEG: 117.8401 -38.5560 116.7164 ] ZXZ: 2.360677 1.930041 0.728540 [DEG: 135.2568 110.5832 41.7422 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS380_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS380_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 3.00 28.988 11.82 REMARK ---------------------------------------------------------- MOLECULE T0537TS380_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyh_B 1bhe_A 2qy1_A ATOM 2529 N SER 351 38.751 10.606 40.772 1.00 0.00 N ATOM 2530 CA SER 351 39.785 10.956 41.679 1.00 0.00 C ATOM 2531 CB SER 351 41.193 10.856 41.067 1.00 0.00 C ATOM 2532 OG SER 351 42.170 11.222 42.029 1.00 0.00 O ATOM 2533 C SER 351 39.513 12.384 41.973 1.00 0.00 C ATOM 2534 O SER 351 40.144 13.282 41.417 1.00 0.00 O ATOM 2535 N ALA 352 38.522 12.621 42.847 1.00 0.00 N ATOM 2536 CA ALA 352 38.233 13.951 43.256 1.00 0.00 C ATOM 2537 CB ALA 352 36.871 14.101 43.954 1.00 0.00 C ATOM 2538 C ALA 352 39.289 14.245 44.249 1.00 0.00 C ATOM 2539 O ALA 352 39.915 13.330 44.788 1.00 0.00 O ATOM 2540 N GLU 353 39.603 15.526 44.467 1.00 0.00 N ATOM 2541 CA GLU 353 40.564 15.676 45.502 1.00 0.00 C ATOM 2542 CB GLU 353 41.089 17.115 45.620 1.00 0.00 C ATOM 2543 CG GLU 353 42.086 17.464 44.508 1.00 0.00 C ATOM 2544 CD GLU 353 41.373 17.383 43.164 1.00 0.00 C ATOM 2545 OE1 GLU 353 40.199 17.835 43.084 1.00 0.00 O ATOM 2546 OE2 GLU 353 41.998 16.874 42.195 1.00 0.00 O ATOM 2547 C GLU 353 39.885 15.259 46.768 1.00 0.00 C ATOM 2548 O GLU 353 40.405 14.429 47.513 1.00 0.00 O ATOM 2549 N GLU 354 38.737 15.897 47.083 1.00 0.00 N ATOM 2550 CA GLU 354 37.952 15.545 48.234 1.00 0.00 C ATOM 2551 CB GLU 354 37.266 16.789 48.832 1.00 0.00 C ATOM 2552 CG GLU 354 36.021 16.477 49.668 1.00 0.00 C ATOM 2553 CD GLU 354 36.406 15.558 50.813 1.00 0.00 C ATOM 2554 OE1 GLU 354 37.538 15.715 51.337 1.00 0.00 O ATOM 2555 OE2 GLU 354 35.575 14.681 51.169 1.00 0.00 O ATOM 2556 C GLU 354 36.859 14.507 48.100 1.00 0.00 C ATOM 2557 O GLU 354 36.942 13.417 48.663 1.00 0.00 O ATOM 2558 N LEU 355 35.846 14.763 47.244 1.00 0.00 N ATOM 2559 CA LEU 355 34.604 14.094 47.553 1.00 0.00 C ATOM 2560 CB LEU 355 33.333 14.845 47.108 1.00 0.00 C ATOM 2561 CG LEU 355 32.029 14.279 47.721 1.00 0.00 C ATOM 2562 CD1 LEU 355 31.566 12.950 47.102 1.00 0.00 C ATOM 2563 CD2 LEU 355 32.160 14.183 49.251 1.00 0.00 C ATOM 2564 C LEU 355 34.475 12.671 47.126 1.00 0.00 C ATOM 2565 O LEU 355 34.356 12.347 45.943 1.00 0.00 O ATOM 2566 N GLY 356 34.516 11.815 48.165 1.00 0.00 N ATOM 2567 CA GLY 356 34.330 10.399 48.296 1.00 0.00 C ATOM 2568 C GLY 356 32.924 9.887 48.443 1.00 0.00 C ATOM 2569 O GLY 356 32.762 8.674 48.330 1.00 0.00 O ATOM 2570 N ASN 357 31.933 10.724 48.859 1.00 0.00 N ATOM 2571 CA ASN 357 30.601 10.270 49.167 1.00 0.00 C ATOM 2572 CB ASN 357 29.719 11.332 49.847 1.00 0.00 C ATOM 2573 CG ASN 357 30.107 11.395 51.315 1.00 0.00 C ATOM 2574 OD1 ASN 357 29.661 10.579 52.120 1.00 0.00 O ATOM 2575 ND2 ASN 357 30.970 12.382 51.677 1.00 0.00 N ATOM 2576 C ASN 357 29.860 9.778 47.974 1.00 0.00 C ATOM 2577 O ASN 357 28.866 10.345 47.537 1.00 0.00 O ATOM 2578 N ILE 358 30.353 8.678 47.424 1.00 0.00 N ATOM 2579 CA ILE 358 29.704 7.830 46.499 1.00 0.00 C ATOM 2580 CB ILE 358 30.580 6.676 46.191 1.00 0.00 C ATOM 2581 CG2 ILE 358 29.691 5.632 45.521 1.00 0.00 C ATOM 2582 CG1 ILE 358 31.848 7.122 45.452 1.00 0.00 C ATOM 2583 CD1 ILE 358 32.995 6.116 45.545 1.00 0.00 C ATOM 2584 C ILE 358 28.625 7.239 47.342 1.00 0.00 C ATOM 2585 O ILE 358 27.496 7.008 46.908 1.00 0.00 O ATOM 2586 N ILE 359 29.020 6.991 48.607 1.00 0.00 N ATOM 2587 CA ILE 359 28.297 6.304 49.636 1.00 0.00 C ATOM 2588 CB ILE 359 28.946 6.417 50.983 1.00 0.00 C ATOM 2589 CG2 ILE 359 28.038 5.724 52.007 1.00 0.00 C ATOM 2590 CG1 ILE 359 30.370 5.859 50.961 1.00 0.00 C ATOM 2591 CD1 ILE 359 30.431 4.365 50.645 1.00 0.00 C ATOM 2592 C ILE 359 26.949 6.889 49.851 1.00 0.00 C ATOM 2593 O ILE 359 26.776 8.085 50.082 1.00 0.00 O ATOM 2594 N VAL 360 25.969 5.981 49.738 1.00 0.00 N ATOM 2595 CA VAL 360 24.564 6.090 49.962 1.00 0.00 C ATOM 2596 CB VAL 360 23.803 5.004 49.251 1.00 0.00 C ATOM 2597 CG1 VAL 360 22.295 5.149 49.527 1.00 0.00 C ATOM 2598 CG2 VAL 360 24.160 5.079 47.759 1.00 0.00 C ATOM 2599 C VAL 360 24.132 6.071 51.398 1.00 0.00 C ATOM 2600 O VAL 360 23.098 6.659 51.651 1.00 0.00 O ATOM 2601 N ALA 361 24.790 5.372 52.357 1.00 0.00 N ATOM 2602 CA ALA 361 24.308 5.415 53.726 1.00 0.00 C ATOM 2603 CB ALA 361 25.001 4.396 54.642 1.00 0.00 C ATOM 2604 C ALA 361 24.674 6.783 54.209 1.00 0.00 C ATOM 2605 O ALA 361 25.663 7.002 54.905 1.00 0.00 O ATOM 2606 N TRP 362 23.756 7.707 53.911 1.00 0.00 N ATOM 2607 CA TRP 362 23.867 9.118 53.925 1.00 0.00 C ATOM 2608 CB TRP 362 22.797 9.696 53.019 1.00 0.00 C ATOM 2609 CG TRP 362 23.186 9.433 51.569 1.00 0.00 C ATOM 2610 CD2 TRP 362 22.265 9.272 50.475 1.00 0.00 C ATOM 2611 CD1 TRP 362 24.438 9.344 51.027 1.00 0.00 C ATOM 2612 NE1 TRP 362 24.354 9.144 49.670 1.00 0.00 N ATOM 2613 CE2 TRP 362 23.023 9.095 49.315 1.00 0.00 C ATOM 2614 CE3 TRP 362 20.899 9.272 50.437 1.00 0.00 C ATOM 2615 CZ2 TRP 362 22.426 8.916 48.101 1.00 0.00 C ATOM 2616 CZ3 TRP 362 20.301 9.086 49.208 1.00 0.00 C ATOM 2617 CH2 TRP 362 21.050 8.912 48.062 1.00 0.00 H ATOM 2618 C TRP 362 24.004 9.745 55.278 1.00 0.00 C ATOM 2619 O TRP 362 24.402 10.910 55.329 1.00 0.00 O ATOM 2620 N ASN 363 23.508 9.074 56.347 1.00 0.00 N ATOM 2621 CA ASN 363 23.798 9.334 57.748 1.00 0.00 C ATOM 2622 CB ASN 363 24.949 8.467 58.296 1.00 0.00 C ATOM 2623 CG ASN 363 25.006 8.664 59.803 1.00 0.00 C ATOM 2624 OD1 ASN 363 26.038 9.043 60.353 1.00 0.00 O ATOM 2625 ND2 ASN 363 23.860 8.408 60.490 1.00 0.00 N ATOM 2626 C ASN 363 24.112 10.778 58.003 1.00 0.00 C ATOM 2627 O ASN 363 25.218 11.140 58.394 1.00 0.00 O ATOM 2628 N PRO 364 23.159 11.606 57.747 1.00 0.00 N ATOM 2629 CA PRO 364 23.287 13.033 57.770 1.00 0.00 C ATOM 2630 CD PRO 364 21.800 11.167 57.479 1.00 0.00 C ATOM 2631 CB PRO 364 22.056 13.528 57.024 1.00 0.00 C ATOM 2632 CG PRO 364 20.996 12.471 57.388 1.00 0.00 C ATOM 2633 C PRO 364 23.263 13.649 59.130 1.00 0.00 C ATOM 2634 O PRO 364 23.090 12.960 60.137 1.00 0.00 O ATOM 2635 N ASN 365 23.524 14.970 59.140 1.00 0.00 N ATOM 2636 CA ASN 365 23.268 15.857 60.233 1.00 0.00 C ATOM 2637 CB ASN 365 24.521 16.182 61.063 1.00 0.00 C ATOM 2638 CG ASN 365 25.566 16.762 60.136 1.00 0.00 C ATOM 2639 OD1 ASN 365 25.790 17.969 60.128 1.00 0.00 O ATOM 2640 ND2 ASN 365 26.212 15.882 59.325 1.00 0.00 N ATOM 2641 C ASN 365 22.754 17.094 59.534 1.00 0.00 C ATOM 2642 O ASN 365 23.285 18.195 59.677 1.00 0.00 O ATOM 2643 N LEU 366 21.637 16.909 58.794 1.00 0.00 N ATOM 2644 CA LEU 366 20.962 17.822 57.905 1.00 0.00 C ATOM 2645 CB LEU 366 19.798 17.166 57.135 1.00 0.00 C ATOM 2646 CG LEU 366 18.653 16.636 58.025 1.00 0.00 C ATOM 2647 CD1 LEU 366 17.497 16.082 57.181 1.00 0.00 C ATOM 2648 CD2 LEU 366 19.150 15.599 59.043 1.00 0.00 C ATOM 2649 C LEU 366 20.373 18.995 58.622 1.00 0.00 C ATOM 2650 O LEU 366 20.029 19.998 57.999 1.00 0.00 O ATOM 2651 N TRP 367 20.216 18.849 59.941 1.00 0.00 N ATOM 2652 CA TRP 367 19.478 19.638 60.888 1.00 0.00 C ATOM 2653 CB TRP 367 20.148 19.565 62.268 1.00 0.00 C ATOM 2654 CG TRP 367 20.567 18.158 62.621 1.00 0.00 C ATOM 2655 CD2 TRP 367 19.702 17.013 62.605 1.00 0.00 C ATOM 2656 CD1 TRP 367 21.816 17.693 62.926 1.00 0.00 C ATOM 2657 NE1 TRP 367 21.777 16.333 63.109 1.00 0.00 N ATOM 2658 CE2 TRP 367 20.482 15.899 62.910 1.00 0.00 C ATOM 2659 CE3 TRP 367 18.367 16.895 62.343 1.00 0.00 C ATOM 2660 CZ2 TRP 367 19.937 14.648 62.962 1.00 0.00 C ATOM 2661 CZ3 TRP 367 17.818 15.633 62.405 1.00 0.00 C ATOM 2662 CH2 TRP 367 18.587 14.531 62.710 1.00 0.00 H ATOM 2663 C TRP 367 19.330 21.101 60.571 1.00 0.00 C ATOM 2664 O TRP 367 20.108 21.943 61.022 1.00 0.00 O ATOM 2665 N LYS 368 18.248 21.431 59.834 1.00 0.00 N ATOM 2666 CA LYS 368 17.800 22.779 59.618 1.00 0.00 C ATOM 2667 CB LYS 368 17.904 23.259 58.156 1.00 0.00 C ATOM 2668 CG LYS 368 19.315 23.664 57.727 1.00 0.00 C ATOM 2669 CD LYS 368 19.855 24.900 58.452 1.00 0.00 C ATOM 2670 CE LYS 368 21.266 25.291 58.015 1.00 0.00 C ATOM 2671 NZ LYS 368 21.245 25.784 56.620 1.00 0.00 N ATOM 2672 C LYS 368 16.347 22.701 59.957 1.00 0.00 C ATOM 2673 O LYS 368 15.639 21.830 59.452 1.00 0.00 O ATOM 2674 N LYS 369 15.860 23.608 60.822 1.00 0.00 N ATOM 2675 CA LYS 369 14.487 23.565 61.243 1.00 0.00 C ATOM 2676 CB LYS 369 14.167 24.736 62.180 1.00 0.00 C ATOM 2677 CG LYS 369 14.961 24.624 63.482 1.00 0.00 C ATOM 2678 CD LYS 369 15.095 25.939 64.250 1.00 0.00 C ATOM 2679 CE LYS 369 16.303 26.769 63.807 1.00 0.00 C ATOM 2680 NZ LYS 369 16.343 28.050 64.548 1.00 0.00 N ATOM 2681 C LYS 369 13.671 23.650 59.996 1.00 0.00 C ATOM 2682 O LYS 369 12.885 22.758 59.685 1.00 0.00 O ATOM 2683 N GLY 370 13.833 24.755 59.260 1.00 0.00 N ATOM 2684 CA GLY 370 13.329 24.860 57.922 1.00 0.00 C ATOM 2685 C GLY 370 11.853 24.766 57.784 1.00 0.00 C ATOM 2686 O GLY 370 11.413 24.116 56.842 1.00 0.00 O ATOM 2687 N THR 371 11.059 25.435 58.645 1.00 0.00 N ATOM 2688 CA THR 371 9.622 25.334 58.584 1.00 0.00 C ATOM 2689 CB THR 371 8.938 26.277 59.520 1.00 0.00 C ATOM 2690 OG1 THR 371 9.279 27.616 59.193 1.00 0.00 O ATOM 2691 CG2 THR 371 9.393 25.949 60.951 1.00 0.00 C ATOM 2692 C THR 371 9.113 25.610 57.195 1.00 0.00 C ATOM 2693 O THR 371 8.867 26.746 56.799 1.00 0.00 O ATOM 2694 N ASN 372 8.900 24.536 56.418 1.00 0.00 N ATOM 2695 CA ASN 372 8.396 24.635 55.086 1.00 0.00 C ATOM 2696 CB ASN 372 9.457 24.287 54.027 1.00 0.00 C ATOM 2697 CG ASN 372 8.973 24.775 52.671 1.00 0.00 C ATOM 2698 OD1 ASN 372 8.003 24.269 52.109 1.00 0.00 O ATOM 2699 ND2 ASN 372 9.674 25.806 52.127 1.00 0.00 N ATOM 2700 C ASN 372 7.368 23.563 55.072 1.00 0.00 C ATOM 2701 O ASN 372 7.775 22.412 55.062 1.00 0.00 O ATOM 2702 N GLY 373 6.063 23.894 54.910 1.00 0.00 N ATOM 2703 CA GLY 373 4.953 23.005 55.217 1.00 0.00 C ATOM 2704 C GLY 373 5.197 21.641 54.654 1.00 0.00 C ATOM 2705 O GLY 373 4.950 20.634 55.315 1.00 0.00 O ATOM 2706 N TYR 374 5.681 21.579 53.413 1.00 0.00 N ATOM 2707 CA TYR 374 6.250 20.370 52.903 1.00 0.00 C ATOM 2708 CB TYR 374 7.549 20.064 53.666 1.00 0.00 C ATOM 2709 CG TYR 374 8.490 19.274 52.835 1.00 0.00 C ATOM 2710 CD1 TYR 374 9.264 19.936 51.910 1.00 0.00 C ATOM 2711 CD2 TYR 374 8.619 17.914 52.989 1.00 0.00 C ATOM 2712 CE1 TYR 374 10.156 19.247 51.131 1.00 0.00 C ATOM 2713 CE2 TYR 374 9.511 17.222 52.211 1.00 0.00 C ATOM 2714 CZ TYR 374 10.277 17.889 51.285 1.00 0.00 C ATOM 2715 OH TYR 374 11.193 17.174 50.492 1.00 0.00 H ATOM 2716 C TYR 374 5.372 19.153 52.954 1.00 0.00 C ATOM 2717 O TYR 374 5.738 18.168 53.594 1.00 0.00 O ATOM 2718 N PRO 375 4.222 19.159 52.336 1.00 0.00 N ATOM 2719 CA PRO 375 3.469 17.939 52.228 1.00 0.00 C ATOM 2720 CD PRO 375 3.907 20.091 51.268 1.00 0.00 C ATOM 2721 CB PRO 375 2.293 18.272 51.318 1.00 0.00 C ATOM 2722 CG PRO 375 2.886 19.348 50.385 1.00 0.00 C ATOM 2723 C PRO 375 4.374 16.939 51.562 1.00 0.00 C ATOM 2724 O PRO 375 5.007 17.292 50.567 1.00 0.00 O ATOM 2725 N ILE 376 4.457 15.698 52.088 1.00 0.00 N ATOM 2726 CA ILE 376 5.299 14.719 51.466 1.00 0.00 C ATOM 2727 CB ILE 376 6.412 14.216 52.337 1.00 0.00 C ATOM 2728 CG2 ILE 376 5.804 13.439 53.517 1.00 0.00 C ATOM 2729 CG1 ILE 376 7.424 13.422 51.495 1.00 0.00 C ATOM 2730 CD1 ILE 376 8.742 13.156 52.219 1.00 0.00 C ATOM 2731 C ILE 376 4.415 13.580 51.055 1.00 0.00 C ATOM 2732 O ILE 376 3.655 13.032 51.850 1.00 0.00 O ATOM 2733 N PHE 377 4.520 13.216 49.767 1.00 0.00 N ATOM 2734 CA PHE 377 3.665 12.299 49.069 1.00 0.00 C ATOM 2735 CB PHE 377 3.887 12.419 47.559 1.00 0.00 C ATOM 2736 CG PHE 377 3.503 13.838 47.321 1.00 0.00 C ATOM 2737 CD1 PHE 377 2.194 14.175 47.072 1.00 0.00 C ATOM 2738 CD2 PHE 377 4.447 14.836 47.386 1.00 0.00 C ATOM 2739 CE1 PHE 377 1.838 15.488 46.869 1.00 0.00 C ATOM 2740 CE2 PHE 377 4.095 16.150 47.184 1.00 0.00 C ATOM 2741 CZ PHE 377 2.787 16.479 46.924 1.00 0.00 C ATOM 2742 C PHE 377 3.805 10.873 49.521 1.00 0.00 C ATOM 2743 O PHE 377 2.834 10.121 49.512 1.00 0.00 O ATOM 2744 N GLN 378 5.020 10.453 49.901 1.00 0.00 N ATOM 2745 CA GLN 378 5.341 9.115 50.323 1.00 0.00 C ATOM 2746 CB GLN 378 4.294 8.507 51.269 1.00 0.00 C ATOM 2747 CG GLN 378 4.187 9.267 52.593 1.00 0.00 C ATOM 2748 CD GLN 378 5.592 9.411 53.168 1.00 0.00 C ATOM 2749 OE1 GLN 378 6.428 10.136 52.628 1.00 0.00 O ATOM 2750 NE2 GLN 378 5.862 8.708 54.299 1.00 0.00 N ATOM 2751 C GLN 378 5.470 8.237 49.113 1.00 0.00 C ATOM 2752 O GLN 378 6.171 7.228 49.142 1.00 0.00 O ATOM 2753 N TRP 379 4.755 8.588 48.030 1.00 0.00 N ATOM 2754 CA TRP 379 4.885 8.083 46.688 1.00 0.00 C ATOM 2755 CB TRP 379 6.240 8.432 46.056 1.00 0.00 C ATOM 2756 CG TRP 379 6.301 8.155 44.574 1.00 0.00 C ATOM 2757 CD2 TRP 379 5.503 8.870 43.620 1.00 0.00 C ATOM 2758 CD1 TRP 379 7.022 7.241 43.870 1.00 0.00 C ATOM 2759 NE1 TRP 379 6.751 7.366 42.528 1.00 0.00 N ATOM 2760 CE2 TRP 379 5.810 8.360 42.362 1.00 0.00 C ATOM 2761 CE3 TRP 379 4.592 9.872 43.782 1.00 0.00 C ATOM 2762 CZ2 TRP 379 5.210 8.852 41.239 1.00 0.00 C ATOM 2763 CZ3 TRP 379 3.980 10.363 42.651 1.00 0.00 C ATOM 2764 CH2 TRP 379 4.285 9.863 41.403 1.00 0.00 H ATOM 2765 C TRP 379 4.630 6.607 46.629 1.00 0.00 C ATOM 2766 O TRP 379 3.523 6.158 46.331 1.00 0.00 O ATOM 2767 N SER 380 5.680 5.822 46.951 1.00 0.00 N ATOM 2768 CA SER 380 5.626 4.390 47.028 1.00 0.00 C ATOM 2769 CB SER 380 4.902 3.896 48.295 1.00 0.00 C ATOM 2770 OG SER 380 4.941 2.480 48.371 1.00 0.00 O ATOM 2771 C SER 380 4.937 3.833 45.818 1.00 0.00 C ATOM 2772 O SER 380 4.272 2.805 45.907 1.00 0.00 O ATOM 2773 N GLU 381 5.093 4.457 44.635 1.00 0.00 N ATOM 2774 CA GLU 381 4.411 3.931 43.481 1.00 0.00 C ATOM 2775 CB GLU 381 4.694 4.716 42.184 1.00 0.00 C ATOM 2776 CG GLU 381 6.173 4.723 41.779 1.00 0.00 C ATOM 2777 CD GLU 381 6.284 5.249 40.354 1.00 0.00 C ATOM 2778 OE1 GLU 381 6.229 6.495 40.163 1.00 0.00 O ATOM 2779 OE2 GLU 381 6.427 4.402 39.433 1.00 0.00 O ATOM 2780 C GLU 381 4.926 2.514 43.252 1.00 0.00 C ATOM 2781 O GLU 381 5.922 2.119 43.917 1.00 0.00 O ATOM 2782 OXT GLU 381 4.332 1.809 42.392 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.29 46.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 69.35 72.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 85.73 42.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 83.06 70.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.50 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 88.19 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 67.12 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 91.17 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 33.53 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.44 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 76.16 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 91.93 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 83.12 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 105.87 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 43.88 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 45.61 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 46.30 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 43.88 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.08 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 80.08 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.08 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.82 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.82 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3814 CRMSCA SECONDARY STRUCTURE . . 9.35 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.95 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.15 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.88 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.21 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.05 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.86 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.03 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.38 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.66 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.04 120 100.0 120 CRMSSC BURIED . . . . . . . . 12.90 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.46 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.44 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.59 224 100.0 224 CRMSALL BURIED . . . . . . . . 11.42 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.130 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.473 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 11.210 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.714 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.141 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 8.295 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 11.303 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 10.233 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.017 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 12.404 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 9.075 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 12.011 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 12.084 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.580 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 8.665 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 11.695 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 10.723 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 12 31 31 DISTCA CA (P) 0.00 0.00 3.23 9.68 38.71 31 DISTCA CA (RMS) 0.00 0.00 2.56 3.68 7.36 DISTCA ALL (N) 1 3 6 21 96 254 254 DISTALL ALL (P) 0.39 1.18 2.36 8.27 37.80 254 DISTALL ALL (RMS) 0.58 1.21 2.06 3.80 7.21 DISTALL END of the results output