####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 311), selected 31 , name T0537TS366_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS366_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 356 - 371 4.95 11.99 LCS_AVERAGE: 46.72 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.83 12.06 LCS_AVERAGE: 16.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.94 16.78 LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.75 14.34 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.57 14.36 LONGEST_CONTINUOUS_SEGMENT: 4 374 - 377 0.95 13.62 LONGEST_CONTINUOUS_SEGMENT: 4 376 - 379 0.98 12.19 LCS_AVERAGE: 11.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 0 3 4 6 7 7 7 8 9 11 12 13 13 15 17 17 22 23 25 25 LCS_GDT A 352 A 352 3 3 9 1 3 3 4 7 8 8 9 11 13 15 16 16 20 22 23 24 24 25 25 LCS_GDT E 353 E 353 3 3 10 1 3 4 4 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT E 354 E 354 3 4 11 0 3 3 3 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT L 355 L 355 3 4 14 0 3 3 3 4 7 7 8 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT G 356 G 356 3 4 16 0 3 3 3 4 4 5 6 9 10 12 16 18 19 22 23 24 24 25 25 LCS_GDT N 357 N 357 3 4 16 3 3 4 4 5 5 6 8 9 12 15 16 18 20 22 23 24 24 25 25 LCS_GDT I 358 I 358 3 4 16 3 3 4 4 5 5 8 10 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT I 359 I 359 3 4 16 3 3 3 4 5 5 9 10 11 11 13 16 18 20 22 23 24 24 25 25 LCS_GDT V 360 V 360 3 4 16 3 3 3 4 5 5 6 7 9 9 10 11 16 17 19 22 24 24 25 25 LCS_GDT A 361 A 361 3 5 16 3 3 4 4 5 6 7 8 10 11 14 16 18 20 22 23 24 24 25 25 LCS_GDT W 362 W 362 4 5 16 3 3 4 4 5 6 7 8 10 10 13 16 18 20 22 23 24 24 25 25 LCS_GDT N 363 N 363 4 5 16 3 3 4 4 5 5 7 8 9 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT P 364 P 364 4 5 16 3 3 4 4 5 5 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT N 365 N 365 4 6 16 3 3 4 5 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT L 366 L 366 4 6 16 3 3 4 5 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT W 367 W 367 4 6 16 3 3 4 5 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT K 368 K 368 4 6 16 3 3 4 5 5 5 8 9 11 13 15 16 18 18 21 23 24 24 25 25 LCS_GDT K 369 K 369 4 6 16 0 3 4 5 6 8 8 9 11 13 15 16 18 18 22 23 24 24 25 25 LCS_GDT G 370 G 370 3 6 16 0 3 4 5 6 8 8 9 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT T 371 T 371 3 6 16 3 3 5 6 7 8 9 10 11 13 15 16 18 20 22 23 24 24 25 25 LCS_GDT N 372 N 372 3 7 15 3 4 5 6 7 8 9 10 11 11 12 13 16 20 22 23 24 24 25 25 LCS_GDT G 373 G 373 4 7 15 3 4 5 5 7 8 9 10 11 11 12 13 16 20 22 23 24 24 25 25 LCS_GDT Y 374 Y 374 4 7 15 3 4 5 6 7 8 9 10 11 11 13 16 17 20 22 23 24 24 25 25 LCS_GDT P 375 P 375 4 7 15 3 4 5 6 7 8 9 10 11 11 13 16 17 20 22 23 24 24 25 25 LCS_GDT I 376 I 376 4 7 15 3 4 5 6 7 8 9 10 11 11 12 13 14 16 17 19 20 23 25 25 LCS_GDT F 377 F 377 4 7 13 3 4 5 6 7 8 9 10 11 11 12 13 14 15 17 19 20 20 22 25 LCS_GDT Q 378 Q 378 4 7 13 3 4 5 6 7 8 9 10 11 11 12 13 14 15 16 19 20 20 22 24 LCS_GDT W 379 W 379 4 6 13 3 4 5 6 7 8 9 10 11 11 12 13 14 15 16 19 20 20 21 22 LCS_GDT S 380 S 380 3 4 13 3 3 4 4 4 4 6 7 11 11 11 13 14 15 16 19 20 20 21 22 LCS_GDT E 381 E 381 3 4 13 3 3 4 4 4 4 6 7 8 9 11 12 14 15 16 19 20 20 21 22 LCS_AVERAGE LCS_A: 24.94 ( 11.24 16.86 46.72 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 8 9 10 11 13 15 16 18 20 22 23 24 24 25 25 GDT PERCENT_AT 9.68 12.90 16.13 19.35 22.58 25.81 29.03 32.26 35.48 41.94 48.39 51.61 58.06 64.52 70.97 74.19 77.42 77.42 80.65 80.65 GDT RMS_LOCAL 0.07 0.57 1.00 1.31 1.71 1.84 2.11 2.47 2.96 3.65 4.03 4.23 4.90 5.52 5.71 5.80 5.97 5.97 6.27 6.27 GDT RMS_ALL_AT 14.77 14.36 14.24 11.43 13.43 11.55 11.48 11.45 12.87 12.63 12.38 12.34 12.12 11.63 11.64 11.78 11.74 11.74 11.74 11.74 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 22.187 0 0.491 0.764 22.653 0.000 0.000 LGA A 352 A 352 16.515 0 0.626 0.599 18.481 0.000 0.000 LGA E 353 E 353 14.946 0 0.615 0.917 19.617 0.000 0.000 LGA E 354 E 354 14.744 0 0.610 1.081 15.294 0.000 0.000 LGA L 355 L 355 15.354 0 0.647 0.699 22.085 0.000 0.000 LGA G 356 G 356 11.243 0 0.608 0.608 12.835 4.048 4.048 LGA N 357 N 357 8.493 0 0.568 0.690 14.952 8.929 4.464 LGA I 358 I 358 5.150 0 0.619 0.652 7.816 31.548 26.250 LGA I 359 I 359 3.538 0 0.524 1.450 9.593 35.833 26.429 LGA V 360 V 360 9.252 0 0.378 0.435 13.873 3.810 2.177 LGA A 361 A 361 10.126 0 0.677 0.607 12.186 0.714 0.857 LGA W 362 W 362 12.253 0 0.032 1.235 15.449 0.000 0.000 LGA N 363 N 363 17.166 0 0.234 1.037 22.315 0.000 0.000 LGA P 364 P 364 17.554 0 0.695 0.762 20.497 0.000 0.000 LGA N 365 N 365 18.308 0 0.707 1.215 19.184 0.000 0.000 LGA L 366 L 366 18.602 0 0.603 1.397 22.617 0.000 0.000 LGA W 367 W 367 14.003 0 0.142 1.196 15.756 0.000 0.000 LGA K 368 K 368 14.171 0 0.621 1.027 19.747 0.000 0.000 LGA K 369 K 369 9.017 0 0.086 0.118 14.691 5.357 2.540 LGA G 370 G 370 7.460 0 0.612 0.612 7.460 15.476 15.476 LGA T 371 T 371 2.495 0 0.606 0.571 3.818 65.595 67.551 LGA N 372 N 372 1.365 0 0.246 1.253 6.257 81.905 60.774 LGA G 373 G 373 3.204 0 0.681 0.681 4.569 50.833 50.833 LGA Y 374 Y 374 3.198 0 0.116 1.207 14.420 67.262 26.587 LGA P 375 P 375 2.679 0 0.178 0.212 6.262 52.262 39.864 LGA I 376 I 376 2.737 0 0.538 1.380 7.799 67.381 44.048 LGA F 377 F 377 1.679 0 0.041 1.146 5.244 70.833 57.316 LGA Q 378 Q 378 1.525 0 0.657 1.278 7.186 69.762 52.222 LGA W 379 W 379 0.452 0 0.666 1.281 6.626 67.976 51.122 LGA S 380 S 380 7.591 0 0.066 0.076 9.423 12.619 9.127 LGA E 381 E 381 11.107 1 0.631 1.189 15.120 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.362 9.256 10.389 22.972 17.474 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.47 34.677 29.879 0.389 LGA_LOCAL RMSD: 2.472 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.451 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.362 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.986643 * X + 0.048859 * Y + -0.155400 * Z + 18.083996 Y_new = -0.142106 * X + -0.208220 * Y + -0.967704 * Z + 38.187771 Z_new = -0.079638 * X + 0.976861 * Y + -0.198495 * Z + 65.356911 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.143046 0.079723 1.771264 [DEG: -8.1960 4.5678 101.4860 ] ZXZ: -0.159227 1.770619 -0.081345 [DEG: -9.1230 101.4490 -4.6607 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS366_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS366_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.47 29.879 9.36 REMARK ---------------------------------------------------------- MOLECULE T0537TS366_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1hg8_A ATOM 3113 N SER 351 6.967 23.170 69.696 1.00 50.00 N ATOM 3114 CA SER 351 8.048 22.602 70.440 1.00 50.00 C ATOM 3115 C SER 351 8.633 21.477 69.648 1.00 50.00 C ATOM 3116 O SER 351 8.887 20.396 70.178 1.00 50.00 O ATOM 3117 H SER 351 6.987 24.041 69.466 1.00 50.00 H ATOM 3118 CB SER 351 7.563 22.128 71.811 1.00 50.00 C ATOM 3119 HG SER 351 6.424 23.559 72.176 1.00 50.00 H ATOM 3120 OG SER 351 7.061 23.210 72.577 1.00 50.00 O ATOM 3121 N ALA 352 8.860 21.712 68.337 1.00 50.00 N ATOM 3122 CA ALA 352 9.469 20.709 67.510 1.00 50.00 C ATOM 3123 C ALA 352 10.914 21.079 67.366 1.00 50.00 C ATOM 3124 O ALA 352 11.243 22.218 67.044 1.00 50.00 O ATOM 3125 H ALA 352 8.625 22.505 67.982 1.00 50.00 H ATOM 3126 CB ALA 352 8.759 20.624 66.168 1.00 50.00 C ATOM 3127 N GLU 353 11.825 20.114 67.616 1.00 50.00 N ATOM 3128 CA GLU 353 13.230 20.403 67.507 1.00 50.00 C ATOM 3129 C GLU 353 13.833 19.360 66.617 1.00 50.00 C ATOM 3130 O GLU 353 13.525 18.178 66.748 1.00 50.00 O ATOM 3131 H GLU 353 11.552 19.290 67.851 1.00 50.00 H ATOM 3132 CB GLU 353 13.881 20.425 68.890 1.00 50.00 C ATOM 3133 CD GLU 353 14.023 21.508 71.169 1.00 50.00 C ATOM 3134 CG GLU 353 13.352 21.514 69.809 1.00 50.00 C ATOM 3135 OE1 GLU 353 14.751 20.538 71.467 1.00 50.00 O ATOM 3136 OE2 GLU 353 13.822 22.474 71.934 1.00 50.00 O ATOM 3137 N GLU 354 14.707 19.760 65.669 1.00 50.00 N ATOM 3138 CA GLU 354 15.274 18.739 64.835 1.00 50.00 C ATOM 3139 C GLU 354 16.723 19.014 64.588 1.00 50.00 C ATOM 3140 O GLU 354 17.149 20.163 64.482 1.00 50.00 O ATOM 3141 H GLU 354 14.939 20.622 65.546 1.00 50.00 H ATOM 3142 CB GLU 354 14.513 18.645 63.511 1.00 50.00 C ATOM 3143 CD GLU 354 14.176 17.424 61.326 1.00 50.00 C ATOM 3144 CG GLU 354 15.002 17.536 62.593 1.00 50.00 C ATOM 3145 OE1 GLU 354 13.163 18.145 61.211 1.00 50.00 O ATOM 3146 OE2 GLU 354 14.542 16.614 60.448 1.00 50.00 O ATOM 3147 N LEU 355 17.513 17.920 64.529 1.00 50.00 N ATOM 3148 CA LEU 355 18.920 17.949 64.240 1.00 50.00 C ATOM 3149 C LEU 355 19.192 16.707 63.435 1.00 50.00 C ATOM 3150 O LEU 355 18.463 15.726 63.563 1.00 50.00 O ATOM 3151 H LEU 355 17.102 17.135 64.685 1.00 50.00 H ATOM 3152 CB LEU 355 19.732 18.011 65.535 1.00 50.00 C ATOM 3153 CG LEU 355 19.536 19.259 66.399 1.00 50.00 C ATOM 3154 CD1 LEU 355 20.232 19.099 67.742 1.00 50.00 C ATOM 3155 CD2 LEU 355 20.053 20.496 65.679 1.00 50.00 C ATOM 3156 N GLY 356 20.237 16.706 62.577 1.00 50.00 N ATOM 3157 CA GLY 356 20.580 15.516 61.834 1.00 50.00 C ATOM 3158 C GLY 356 20.041 15.619 60.436 1.00 50.00 C ATOM 3159 O GLY 356 19.051 16.310 60.208 1.00 50.00 O ATOM 3160 H GLY 356 20.720 17.457 62.471 1.00 50.00 H ATOM 3161 N ASN 357 20.661 14.897 59.464 1.00 50.00 N ATOM 3162 CA ASN 357 20.254 15.085 58.095 1.00 50.00 C ATOM 3163 C ASN 357 20.022 13.796 57.370 1.00 50.00 C ATOM 3164 O ASN 357 20.675 12.775 57.599 1.00 50.00 O ATOM 3165 H ASN 357 21.315 14.311 59.663 1.00 50.00 H ATOM 3166 CB ASN 357 21.288 15.919 57.338 1.00 50.00 C ATOM 3167 CG ASN 357 21.400 17.334 57.871 1.00 50.00 C ATOM 3168 OD1 ASN 357 20.580 18.196 57.552 1.00 50.00 O ATOM 3169 HD21 ASN 357 22.528 18.402 59.036 1.00 50.00 H ATOM 3170 HD22 ASN 357 22.993 16.920 58.899 1.00 50.00 H ATOM 3171 ND2 ASN 357 22.416 17.578 58.691 1.00 50.00 N ATOM 3172 N ILE 358 19.051 13.846 56.442 1.00 50.00 N ATOM 3173 CA ILE 358 18.684 12.763 55.582 1.00 50.00 C ATOM 3174 C ILE 358 18.768 13.308 54.197 1.00 50.00 C ATOM 3175 O ILE 358 18.405 14.462 53.958 1.00 50.00 O ATOM 3176 H ILE 358 18.619 14.633 56.383 1.00 50.00 H ATOM 3177 CB ILE 358 17.286 12.217 55.928 1.00 50.00 C ATOM 3178 CD1 ILE 358 15.871 11.347 57.862 1.00 50.00 C ATOM 3179 CG1 ILE 358 17.257 11.693 57.366 1.00 50.00 C ATOM 3180 CG2 ILE 358 16.868 11.150 54.927 1.00 50.00 C ATOM 3181 N ILE 359 19.260 12.504 53.234 1.00 50.00 N ATOM 3182 CA ILE 359 19.434 13.058 51.921 1.00 50.00 C ATOM 3183 C ILE 359 19.001 12.096 50.858 1.00 50.00 C ATOM 3184 O ILE 359 18.512 11.004 51.146 1.00 50.00 O ATOM 3185 H ILE 359 19.479 11.645 53.392 1.00 50.00 H ATOM 3186 CB ILE 359 20.895 13.479 51.674 1.00 50.00 C ATOM 3187 CD1 ILE 359 23.243 12.549 51.329 1.00 50.00 C ATOM 3188 CG1 ILE 359 21.822 12.265 51.762 1.00 50.00 C ATOM 3189 CG2 ILE 359 21.304 14.576 52.645 1.00 50.00 C ATOM 3190 N VAL 360 19.188 12.542 49.594 1.00 50.00 N ATOM 3191 CA VAL 360 18.941 11.910 48.324 1.00 50.00 C ATOM 3192 C VAL 360 17.499 11.619 48.015 1.00 50.00 C ATOM 3193 O VAL 360 17.175 10.586 47.431 1.00 50.00 O ATOM 3194 H VAL 360 19.524 13.376 49.624 1.00 50.00 H ATOM 3195 CB VAL 360 19.712 10.584 48.195 1.00 50.00 C ATOM 3196 CG1 VAL 360 19.490 9.971 46.820 1.00 50.00 C ATOM 3197 CG2 VAL 360 21.196 10.803 48.450 1.00 50.00 C ATOM 3198 N ALA 361 16.578 12.541 48.364 1.00 50.00 N ATOM 3199 CA ALA 361 15.220 12.370 47.927 1.00 50.00 C ATOM 3200 C ALA 361 15.077 13.325 46.785 1.00 50.00 C ATOM 3201 O ALA 361 15.312 14.520 46.946 1.00 50.00 O ATOM 3202 H ALA 361 16.803 13.254 48.863 1.00 50.00 H ATOM 3203 CB ALA 361 14.256 12.638 49.072 1.00 50.00 C ATOM 3204 N TRP 362 14.732 12.822 45.582 1.00 50.00 N ATOM 3205 CA TRP 362 14.612 13.724 44.471 1.00 50.00 C ATOM 3206 C TRP 362 13.437 14.631 44.604 1.00 50.00 C ATOM 3207 O TRP 362 13.536 15.814 44.287 1.00 50.00 O ATOM 3208 H TRP 362 14.577 11.942 45.467 1.00 50.00 H ATOM 3209 CB TRP 362 14.509 12.946 43.158 1.00 50.00 C ATOM 3210 HB2 TRP 362 13.550 12.591 43.000 1.00 50.00 H ATOM 3211 HB3 TRP 362 15.344 12.482 42.861 1.00 50.00 H ATOM 3212 CG TRP 362 14.412 13.823 41.947 1.00 50.00 C ATOM 3213 CD1 TRP 362 15.448 14.362 41.241 1.00 50.00 C ATOM 3214 HE1 TRP 362 15.500 15.574 39.575 1.00 50.00 H ATOM 3215 NE1 TRP 362 14.969 15.111 40.193 1.00 50.00 N ATOM 3216 CD2 TRP 362 13.212 14.263 41.301 1.00 50.00 C ATOM 3217 CE2 TRP 362 13.598 15.065 40.211 1.00 50.00 C ATOM 3218 CH2 TRP 362 11.345 15.445 39.613 1.00 50.00 C ATOM 3219 CZ2 TRP 362 12.670 15.661 39.357 1.00 50.00 C ATOM 3220 CE3 TRP 362 11.850 14.058 41.538 1.00 50.00 C ATOM 3221 CZ3 TRP 362 10.933 14.652 40.690 1.00 50.00 C ATOM 3222 N ASN 363 12.289 14.108 45.071 1.00 50.00 N ATOM 3223 CA ASN 363 11.114 14.923 45.171 1.00 50.00 C ATOM 3224 C ASN 363 11.357 15.933 46.241 1.00 50.00 C ATOM 3225 O ASN 363 12.009 15.658 47.248 1.00 50.00 O ATOM 3226 H ASN 363 12.260 13.244 45.321 1.00 50.00 H ATOM 3227 CB ASN 363 9.884 14.057 45.449 1.00 50.00 C ATOM 3228 CG ASN 363 9.515 13.173 44.275 1.00 50.00 C ATOM 3229 OD1 ASN 363 9.345 13.654 43.155 1.00 50.00 O ATOM 3230 HD21 ASN 363 9.174 11.307 43.866 1.00 50.00 H ATOM 3231 HD22 ASN 363 9.525 11.566 45.362 1.00 50.00 H ATOM 3232 ND2 ASN 363 9.391 11.876 44.528 1.00 50.00 N ATOM 3233 N PRO 364 10.854 17.117 46.027 1.00 50.00 N ATOM 3234 CA PRO 364 11.014 18.149 47.003 1.00 50.00 C ATOM 3235 C PRO 364 10.207 17.819 48.213 1.00 50.00 C ATOM 3236 O PRO 364 9.083 17.337 48.072 1.00 50.00 O ATOM 3237 CB PRO 364 10.509 19.409 46.297 1.00 50.00 C ATOM 3238 CD PRO 364 10.097 17.573 44.817 1.00 50.00 C ATOM 3239 CG PRO 364 9.558 18.903 45.265 1.00 50.00 C ATOM 3240 N ASN 365 10.759 18.071 49.412 1.00 50.00 N ATOM 3241 CA ASN 365 10.026 17.734 50.591 1.00 50.00 C ATOM 3242 C ASN 365 9.046 18.830 50.843 1.00 50.00 C ATOM 3243 O ASN 365 9.295 19.985 50.498 1.00 50.00 O ATOM 3244 H ASN 365 11.574 18.445 49.481 1.00 50.00 H ATOM 3245 CB ASN 365 10.977 17.518 51.770 1.00 50.00 C ATOM 3246 CG ASN 365 11.745 18.772 52.137 1.00 50.00 C ATOM 3247 OD1 ASN 365 11.153 19.809 52.436 1.00 50.00 O ATOM 3248 HD21 ASN 365 13.574 19.397 52.325 1.00 50.00 H ATOM 3249 HD22 ASN 365 13.463 17.904 51.892 1.00 50.00 H ATOM 3250 ND2 ASN 365 13.070 18.681 52.116 1.00 50.00 N ATOM 3251 N LEU 366 7.883 18.475 51.427 1.00 50.00 N ATOM 3252 CA LEU 366 6.901 19.458 51.780 1.00 50.00 C ATOM 3253 C LEU 366 6.813 19.463 53.272 1.00 50.00 C ATOM 3254 O LEU 366 6.659 18.414 53.899 1.00 50.00 O ATOM 3255 H LEU 366 7.730 17.605 51.596 1.00 50.00 H ATOM 3256 CB LEU 366 5.559 19.135 51.119 1.00 50.00 C ATOM 3257 CG LEU 366 5.553 19.079 49.589 1.00 50.00 C ATOM 3258 CD1 LEU 366 4.185 18.661 49.072 1.00 50.00 C ATOM 3259 CD2 LEU 366 5.955 20.422 49.001 1.00 50.00 C ATOM 3260 N TRP 367 6.917 20.664 53.875 1.00 50.00 N ATOM 3261 CA TRP 367 6.970 20.794 55.301 1.00 50.00 C ATOM 3262 C TRP 367 6.072 21.928 55.700 1.00 50.00 C ATOM 3263 O TRP 367 6.338 23.085 55.370 1.00 50.00 O ATOM 3264 H TRP 367 6.954 21.398 53.355 1.00 50.00 H ATOM 3265 CB TRP 367 8.410 21.024 55.765 1.00 50.00 C ATOM 3266 HB2 TRP 367 8.680 22.019 55.684 1.00 50.00 H ATOM 3267 HB3 TRP 367 9.034 20.252 55.644 1.00 50.00 H ATOM 3268 CG TRP 367 8.558 21.077 57.254 1.00 50.00 C ATOM 3269 CD1 TRP 367 8.015 20.216 58.163 1.00 50.00 C ATOM 3270 HE1 TRP 367 8.113 20.139 60.221 1.00 50.00 H ATOM 3271 NE1 TRP 367 8.372 20.585 59.438 1.00 50.00 N ATOM 3272 CD2 TRP 367 9.299 22.044 58.009 1.00 50.00 C ATOM 3273 CE2 TRP 367 9.161 21.706 59.367 1.00 50.00 C ATOM 3274 CH2 TRP 367 10.504 23.533 60.023 1.00 50.00 C ATOM 3275 CZ2 TRP 367 9.761 22.446 60.386 1.00 50.00 C ATOM 3276 CE3 TRP 367 10.066 23.162 57.668 1.00 50.00 C ATOM 3277 CZ3 TRP 367 10.660 23.892 58.681 1.00 50.00 C ATOM 3278 N LYS 368 4.958 21.610 56.388 1.00 50.00 N ATOM 3279 CA LYS 368 3.994 22.572 56.852 1.00 50.00 C ATOM 3280 C LYS 368 4.481 23.328 58.051 1.00 50.00 C ATOM 3281 O LYS 368 4.228 24.524 58.177 1.00 50.00 O ATOM 3282 H LYS 368 4.834 20.734 56.553 1.00 50.00 H ATOM 3283 CB LYS 368 2.669 21.886 57.186 1.00 50.00 C ATOM 3284 CD LYS 368 1.139 23.769 56.543 1.00 50.00 C ATOM 3285 CE LYS 368 -0.023 24.644 56.983 1.00 50.00 C ATOM 3286 CG LYS 368 1.580 22.835 57.658 1.00 50.00 C ATOM 3287 HZ1 LYS 368 -1.110 26.100 56.210 1.00 50.00 H ATOM 3288 HZ2 LYS 368 -0.679 25.155 55.193 1.00 50.00 H ATOM 3289 HZ3 LYS 368 0.258 26.134 55.719 1.00 50.00 H ATOM 3290 NZ LYS 368 -0.429 25.605 55.919 1.00 50.00 N ATOM 3291 N LYS 369 5.152 22.645 59.000 1.00 50.00 N ATOM 3292 CA LYS 369 5.588 23.342 60.175 1.00 50.00 C ATOM 3293 C LYS 369 6.842 22.706 60.663 1.00 50.00 C ATOM 3294 O LYS 369 7.151 21.582 60.283 1.00 50.00 O ATOM 3295 H LYS 369 5.328 21.767 58.906 1.00 50.00 H ATOM 3296 CB LYS 369 4.495 23.320 61.247 1.00 50.00 C ATOM 3297 CD LYS 369 2.201 24.030 61.975 1.00 50.00 C ATOM 3298 CE LYS 369 0.920 24.741 61.570 1.00 50.00 C ATOM 3299 CG LYS 369 3.221 24.047 60.848 1.00 50.00 C ATOM 3300 HZ1 LYS 369 -0.813 25.181 62.405 1.00 50.00 H ATOM 3301 HZ2 LYS 369 0.264 25.181 63.380 1.00 50.00 H ATOM 3302 HZ3 LYS 369 -0.284 23.923 62.902 1.00 50.00 H ATOM 3303 NZ LYS 369 -0.079 24.759 62.675 1.00 50.00 N ATOM 3304 N GLY 370 7.589 23.389 61.558 1.00 50.00 N ATOM 3305 CA GLY 370 7.208 24.653 62.122 1.00 50.00 C ATOM 3306 C GLY 370 7.104 25.688 61.051 1.00 50.00 C ATOM 3307 O GLY 370 6.184 26.505 61.062 1.00 50.00 O ATOM 3308 H GLY 370 8.367 23.006 61.798 1.00 50.00 H ATOM 3309 N THR 371 8.051 25.696 60.098 1.00 50.00 N ATOM 3310 CA THR 371 7.958 26.678 59.066 1.00 50.00 C ATOM 3311 C THR 371 7.605 26.018 57.774 1.00 50.00 C ATOM 3312 O THR 371 7.245 24.842 57.721 1.00 50.00 O ATOM 3313 H THR 371 8.730 25.106 60.098 1.00 50.00 H ATOM 3314 CB THR 371 9.273 27.467 58.916 1.00 50.00 C ATOM 3315 HG1 THR 371 10.416 25.978 59.014 1.00 50.00 H ATOM 3316 OG1 THR 371 10.311 26.590 58.462 1.00 50.00 O ATOM 3317 CG2 THR 371 9.690 28.064 60.252 1.00 50.00 C ATOM 3318 N ASN 372 7.682 26.822 56.697 1.00 50.00 N ATOM 3319 CA ASN 372 7.376 26.438 55.354 1.00 50.00 C ATOM 3320 C ASN 372 8.380 25.436 54.890 1.00 50.00 C ATOM 3321 O ASN 372 8.055 24.559 54.092 1.00 50.00 O ATOM 3322 H ASN 372 7.952 27.662 56.874 1.00 50.00 H ATOM 3323 CB ASN 372 7.338 27.665 54.441 1.00 50.00 C ATOM 3324 CG ASN 372 6.106 28.519 54.665 1.00 50.00 C ATOM 3325 OD1 ASN 372 5.093 28.044 55.177 1.00 50.00 O ATOM 3326 HD21 ASN 372 5.485 30.338 54.388 1.00 50.00 H ATOM 3327 HD22 ASN 372 6.949 30.097 53.907 1.00 50.00 H ATOM 3328 ND2 ASN 372 6.188 29.788 54.279 1.00 50.00 N ATOM 3329 N GLY 373 9.639 25.539 55.352 1.00 50.00 N ATOM 3330 CA GLY 373 10.613 24.637 54.809 1.00 50.00 C ATOM 3331 C GLY 373 11.080 23.671 55.848 1.00 50.00 C ATOM 3332 O GLY 373 10.942 23.897 57.048 1.00 50.00 O ATOM 3333 H GLY 373 9.881 26.140 55.976 1.00 50.00 H ATOM 3334 N TYR 374 11.676 22.561 55.365 1.00 50.00 N ATOM 3335 CA TYR 374 12.241 21.506 56.156 1.00 50.00 C ATOM 3336 C TYR 374 13.709 21.637 55.996 1.00 50.00 C ATOM 3337 O TYR 374 14.201 21.921 54.905 1.00 50.00 O ATOM 3338 H TYR 374 11.703 22.514 54.467 1.00 50.00 H ATOM 3339 CB TYR 374 11.706 20.148 55.699 1.00 50.00 C ATOM 3340 CG TYR 374 12.275 18.975 56.465 1.00 50.00 C ATOM 3341 HH TYR 374 13.468 15.715 59.331 1.00 50.00 H ATOM 3342 OH TYR 374 13.831 15.754 58.585 1.00 50.00 O ATOM 3343 CZ TYR 374 13.317 16.820 57.882 1.00 50.00 C ATOM 3344 CD1 TYR 374 11.835 18.684 57.749 1.00 50.00 C ATOM 3345 CE1 TYR 374 12.349 17.615 58.458 1.00 50.00 C ATOM 3346 CD2 TYR 374 13.251 18.163 55.901 1.00 50.00 C ATOM 3347 CE2 TYR 374 13.776 17.090 56.594 1.00 50.00 C ATOM 3348 N PRO 375 14.427 21.477 57.068 1.00 50.00 N ATOM 3349 CA PRO 375 15.836 21.664 56.939 1.00 50.00 C ATOM 3350 C PRO 375 16.493 20.682 56.043 1.00 50.00 C ATOM 3351 O PRO 375 16.679 19.535 56.441 1.00 50.00 O ATOM 3352 CB PRO 375 16.361 21.514 58.369 1.00 50.00 C ATOM 3353 CD PRO 375 13.980 21.337 58.536 1.00 50.00 C ATOM 3354 CG PRO 375 15.199 21.872 59.234 1.00 50.00 C ATOM 3355 N ILE 376 16.864 21.121 54.824 1.00 50.00 N ATOM 3356 CA ILE 376 17.601 20.259 53.959 1.00 50.00 C ATOM 3357 C ILE 376 18.968 20.161 54.545 1.00 50.00 C ATOM 3358 O ILE 376 19.540 19.079 54.659 1.00 50.00 O ATOM 3359 H ILE 376 16.648 21.953 54.555 1.00 50.00 H ATOM 3360 CB ILE 376 17.613 20.788 52.513 1.00 50.00 C ATOM 3361 CD1 ILE 376 16.072 21.465 50.598 1.00 50.00 C ATOM 3362 CG1 ILE 376 16.208 20.725 51.910 1.00 50.00 C ATOM 3363 CG2 ILE 376 18.623 20.020 51.673 1.00 50.00 C ATOM 3364 N PHE 377 19.514 21.321 54.955 1.00 50.00 N ATOM 3365 CA PHE 377 20.813 21.374 55.550 1.00 50.00 C ATOM 3366 C PHE 377 20.732 22.379 56.645 1.00 50.00 C ATOM 3367 O PHE 377 19.883 23.269 56.619 1.00 50.00 O ATOM 3368 H PHE 377 19.037 22.078 54.847 1.00 50.00 H ATOM 3369 CB PHE 377 21.869 21.732 54.500 1.00 50.00 C ATOM 3370 CG PHE 377 21.710 23.111 53.927 1.00 50.00 C ATOM 3371 CZ PHE 377 21.411 25.661 52.861 1.00 50.00 C ATOM 3372 CD1 PHE 377 22.371 24.190 54.488 1.00 50.00 C ATOM 3373 CE1 PHE 377 22.224 25.458 53.960 1.00 50.00 C ATOM 3374 CD2 PHE 377 20.899 23.330 52.827 1.00 50.00 C ATOM 3375 CE2 PHE 377 20.754 24.598 52.299 1.00 50.00 C ATOM 3376 N GLN 378 21.614 22.259 57.653 1.00 50.00 N ATOM 3377 CA GLN 378 21.538 23.198 58.726 1.00 50.00 C ATOM 3378 C GLN 378 22.852 23.893 58.829 1.00 50.00 C ATOM 3379 O GLN 378 23.910 23.299 58.620 1.00 50.00 O ATOM 3380 H GLN 378 22.239 21.611 57.666 1.00 50.00 H ATOM 3381 CB GLN 378 21.168 22.492 60.032 1.00 50.00 C ATOM 3382 CD GLN 378 19.930 24.379 61.165 1.00 50.00 C ATOM 3383 CG GLN 378 21.097 23.414 61.237 1.00 50.00 C ATOM 3384 OE1 GLN 378 18.776 23.964 61.057 1.00 50.00 O ATOM 3385 HE21 GLN 378 19.571 26.287 61.188 1.00 50.00 H ATOM 3386 HE22 GLN 378 21.085 25.933 61.305 1.00 50.00 H ATOM 3387 NE2 GLN 378 20.227 25.672 61.225 1.00 50.00 N ATOM 3388 N TRP 379 22.803 25.203 59.135 1.00 50.00 N ATOM 3389 CA TRP 379 24.004 25.963 59.287 1.00 50.00 C ATOM 3390 C TRP 379 24.387 25.812 60.721 1.00 50.00 C ATOM 3391 O TRP 379 23.532 25.842 61.603 1.00 50.00 O ATOM 3392 H TRP 379 22.003 25.600 59.243 1.00 50.00 H ATOM 3393 CB TRP 379 23.773 27.418 58.877 1.00 50.00 C ATOM 3394 HB2 TRP 379 24.664 27.943 58.817 1.00 50.00 H ATOM 3395 HB3 TRP 379 22.897 27.815 59.151 1.00 50.00 H ATOM 3396 CG TRP 379 23.540 27.598 57.407 1.00 50.00 C ATOM 3397 CD1 TRP 379 22.334 27.688 56.774 1.00 50.00 C ATOM 3398 HE1 TRP 379 21.832 27.932 54.791 1.00 50.00 H ATOM 3399 NE1 TRP 379 22.519 27.848 55.422 1.00 50.00 N ATOM 3400 CD2 TRP 379 24.540 27.709 56.387 1.00 50.00 C ATOM 3401 CE2 TRP 379 23.867 27.864 55.161 1.00 50.00 C ATOM 3402 CH2 TRP 379 25.909 27.982 53.983 1.00 50.00 C ATOM 3403 CZ2 TRP 379 24.543 28.001 53.950 1.00 50.00 C ATOM 3404 CE3 TRP 379 25.937 27.692 56.390 1.00 50.00 C ATOM 3405 CZ3 TRP 379 26.604 27.829 55.187 1.00 50.00 C ATOM 3406 N SER 380 25.691 25.622 60.993 1.00 50.00 N ATOM 3407 CA SER 380 26.099 25.444 62.354 1.00 50.00 C ATOM 3408 C SER 380 27.175 26.434 62.638 1.00 50.00 C ATOM 3409 O SER 380 27.890 26.870 61.737 1.00 50.00 O ATOM 3410 H SER 380 26.304 25.606 60.334 1.00 50.00 H ATOM 3411 CB SER 380 26.570 24.007 62.588 1.00 50.00 C ATOM 3412 HG SER 380 25.256 23.152 61.578 1.00 50.00 H ATOM 3413 OG SER 380 25.519 23.083 62.362 1.00 50.00 O ATOM 3414 N GLU 381 27.297 26.833 63.917 1.00 50.00 N ATOM 3415 CA GLU 381 28.321 27.760 64.290 1.00 50.00 C ATOM 3416 C GLU 381 29.513 26.922 64.729 1.00 50.00 C ATOM 3417 O GLU 381 30.570 27.521 65.063 1.00 50.00 O ATOM 3418 H GLU 381 26.731 26.514 64.540 1.00 50.00 H ATOM 3419 CB GLU 381 27.821 28.697 65.391 1.00 50.00 C ATOM 3420 CD GLU 381 26.202 30.509 66.081 1.00 50.00 C ATOM 3421 CG GLU 381 26.656 29.580 64.973 1.00 50.00 C ATOM 3422 OE1 GLU 381 26.692 30.358 67.220 1.00 50.00 O ATOM 3423 OE2 GLU 381 25.357 31.388 65.811 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 104.94 21.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 120.62 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.67 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 111.06 10.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.29 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 99.18 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 83.26 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.81 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 75.15 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.30 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 67.48 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 47.51 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 71.61 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 5.32 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 32.21 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 33.82 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.39 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 32.21 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 2.77 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 2.77 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 2.77 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.36 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.36 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3020 CRMSCA SECONDARY STRUCTURE . . 8.39 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.49 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.69 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.45 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.36 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.59 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.61 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.46 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.37 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 11.63 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.49 119 99.2 120 CRMSSC BURIED . . . . . . . . 11.09 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.44 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 9.96 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.57 223 99.6 224 CRMSALL BURIED . . . . . . . . 9.41 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.094 0.702 0.743 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 41.900 0.724 0.759 11 100.0 11 ERRCA SURFACE . . . . . . . . 40.966 0.698 0.740 26 100.0 26 ERRCA BURIED . . . . . . . . 41.761 0.721 0.758 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.041 0.701 0.742 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 41.977 0.726 0.761 54 100.0 54 ERRMC SURFACE . . . . . . . . 40.909 0.697 0.739 129 100.0 129 ERRMC BURIED . . . . . . . . 41.780 0.721 0.757 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.055 0.646 0.702 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 39.187 0.650 0.705 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 38.764 0.637 0.695 41 100.0 41 ERRSC SURFACE . . . . . . . . 38.977 0.643 0.699 119 99.2 120 ERRSC BURIED . . . . . . . . 39.986 0.677 0.728 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 40.107 0.675 0.723 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 40.517 0.686 0.731 85 100.0 85 ERRALL SURFACE . . . . . . . . 39.953 0.670 0.720 223 99.6 224 ERRALL BURIED . . . . . . . . 41.250 0.708 0.749 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 20 31 31 DISTCA CA (P) 0.00 0.00 3.23 6.45 64.52 31 DISTCA CA (RMS) 0.00 0.00 2.78 3.54 7.53 DISTCA ALL (N) 0 1 3 15 129 253 254 DISTALL ALL (P) 0.00 0.39 1.18 5.91 50.79 254 DISTALL ALL (RMS) 0.00 1.57 2.40 3.88 7.64 DISTALL END of the results output