####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 30 ( 244), selected 30 , name T0537TS365_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 30 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS365_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 361 - 374 4.82 12.44 LCS_AVERAGE: 41.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.97 16.59 LCS_AVERAGE: 16.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.74 21.05 LONGEST_CONTINUOUS_SEGMENT: 4 371 - 374 0.98 16.08 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.52 16.98 LONGEST_CONTINUOUS_SEGMENT: 4 376 - 379 0.93 19.28 LCS_AVERAGE: 11.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 30 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 3 7 9 9 10 11 12 14 17 17 18 19 20 21 23 LCS_GDT A 352 A 352 3 3 11 3 5 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT E 353 E 353 3 5 13 3 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT E 354 E 354 3 5 13 3 3 4 4 5 5 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT L 355 L 355 3 5 13 3 3 4 4 5 5 6 8 9 10 11 14 15 19 19 20 21 22 23 23 LCS_GDT G 356 G 356 3 5 13 3 3 4 4 5 5 6 9 9 10 11 12 15 19 19 20 21 22 23 23 LCS_GDT N 357 N 357 3 5 13 3 3 4 4 5 5 6 7 9 10 11 12 15 19 19 20 21 22 23 23 LCS_GDT I 358 I 358 3 4 13 3 3 4 4 4 5 7 9 9 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT I 359 I 359 3 4 13 3 3 3 4 4 4 6 8 9 9 11 12 14 17 17 20 21 22 23 23 LCS_GDT V 360 V 360 3 4 13 3 3 3 4 4 4 5 8 9 10 11 12 15 19 19 20 21 22 23 23 LCS_GDT A 361 A 361 3 4 14 1 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT W 362 W 362 4 5 14 3 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT N 363 N 363 4 5 14 3 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT P 364 P 364 4 5 14 3 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT N 365 N 365 4 5 14 3 4 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT L 366 L 366 3 5 14 3 3 5 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT W 367 W 367 3 5 14 3 3 4 4 5 6 6 9 9 12 13 14 14 16 17 20 21 22 23 23 LCS_GDT K 368 K 368 3 5 14 3 3 4 4 5 6 6 9 9 12 12 14 14 16 17 19 20 22 23 23 LCS_GDT K 369 K 369 3 5 14 3 3 4 4 5 6 6 9 9 12 12 13 13 16 17 19 19 22 23 23 LCS_GDT G 370 G 370 3 5 14 3 3 3 5 5 6 7 10 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT T 371 T 371 4 5 14 3 3 4 4 4 5 7 9 9 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT N 372 N 372 4 7 14 3 3 5 5 7 7 8 8 9 9 11 12 15 19 19 20 21 22 23 23 LCS_GDT G 373 G 373 4 7 14 3 5 5 5 7 7 8 9 11 13 13 14 15 19 19 20 21 22 23 23 LCS_GDT Y 374 Y 374 4 7 14 3 5 5 5 7 7 8 9 9 10 11 12 14 19 19 20 21 22 23 23 LCS_GDT P 375 P 375 4 7 11 3 5 5 5 7 7 8 9 9 10 11 12 14 17 17 18 19 21 22 23 LCS_GDT I 376 I 376 4 7 11 3 5 5 5 5 7 8 9 9 10 11 12 14 17 17 18 19 19 21 21 LCS_GDT F 377 F 377 4 7 11 3 3 5 5 7 7 8 8 9 9 11 11 14 17 17 18 19 19 21 21 LCS_GDT Q 378 Q 378 4 7 11 3 3 4 5 7 7 8 8 9 10 11 12 14 17 17 18 19 19 21 21 LCS_GDT W 379 W 379 4 5 11 1 3 5 5 7 7 8 8 9 9 11 11 14 15 15 18 19 19 21 21 LCS_GDT S 380 S 380 3 5 11 0 3 3 3 4 6 7 7 9 9 11 11 14 15 16 17 19 19 21 21 LCS_AVERAGE LCS_A: 23.15 ( 11.08 16.77 41.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 5 7 7 8 10 11 13 13 14 15 19 19 20 21 22 23 23 GDT PERCENT_AT 9.68 16.13 16.13 16.13 22.58 22.58 25.81 32.26 35.48 41.94 41.94 45.16 48.39 61.29 61.29 64.52 67.74 70.97 74.19 74.19 GDT RMS_LOCAL 0.01 0.66 0.66 0.66 1.68 1.68 2.05 3.18 3.49 3.92 3.82 4.05 4.54 5.48 5.48 5.62 5.82 6.02 6.22 6.22 GDT RMS_ALL_AT 20.52 16.71 16.71 16.71 16.56 16.56 16.64 12.55 12.20 11.94 12.29 12.52 11.69 11.14 11.14 11.24 11.16 11.29 11.41 11.41 # Checking swapping # possible swapping detected: E 354 E 354 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 9.837 0 0.045 0.696 11.689 5.952 3.968 LGA A 352 A 352 3.106 0 0.631 0.607 5.501 50.238 53.143 LGA E 353 E 353 3.220 0 0.606 1.361 10.996 63.214 32.328 LGA E 354 E 354 3.271 0 0.611 1.038 7.878 41.548 28.254 LGA L 355 L 355 8.785 0 0.437 0.782 13.030 5.357 2.679 LGA G 356 G 356 10.341 0 0.597 0.597 11.258 0.714 0.714 LGA N 357 N 357 10.310 0 0.612 1.254 13.752 0.476 0.238 LGA I 358 I 358 6.901 0 0.585 0.782 9.809 5.357 17.440 LGA I 359 I 359 11.776 0 0.585 0.590 17.388 0.119 0.060 LGA V 360 V 360 10.258 0 0.607 0.768 14.435 2.976 1.701 LGA A 361 A 361 3.024 0 0.690 0.621 5.523 46.429 53.429 LGA W 362 W 362 3.066 0 0.637 1.115 13.655 57.262 23.639 LGA N 363 N 363 2.368 0 0.032 0.472 7.493 75.595 47.143 LGA P 364 P 364 3.689 0 0.678 0.608 6.231 45.714 38.163 LGA N 365 N 365 3.507 0 0.401 0.387 7.244 46.905 31.786 LGA L 366 L 366 3.691 0 0.596 0.749 9.985 50.119 29.048 LGA W 367 W 367 5.232 0 0.045 1.006 8.981 28.929 16.667 LGA K 368 K 368 6.285 0 0.036 0.136 6.745 16.310 16.772 LGA K 369 K 369 7.013 0 0.504 0.774 18.189 24.524 11.217 LGA G 370 G 370 2.635 0 0.098 0.098 5.619 39.762 39.762 LGA T 371 T 371 6.154 0 0.664 0.545 7.066 21.190 17.347 LGA N 372 N 372 9.097 0 0.683 1.464 11.772 2.857 1.488 LGA G 373 G 373 6.587 0 0.666 0.666 7.978 11.786 11.786 LGA Y 374 Y 374 12.087 0 0.025 0.298 16.661 0.000 0.000 LGA P 375 P 375 15.128 0 0.139 0.302 17.403 0.000 0.000 LGA I 376 I 376 21.215 0 0.538 1.477 24.238 0.000 0.000 LGA F 377 F 377 23.274 0 0.070 1.531 25.071 0.000 0.000 LGA Q 378 Q 378 25.863 0 0.635 0.855 27.063 0.000 0.000 LGA W 379 W 379 29.206 0 0.715 1.192 33.068 0.000 0.000 LGA S 380 S 380 27.877 0 0.118 0.177 30.585 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 30 120 120 100.00 244 244 100.00 31 SUMMARY(RMSD_GDC): 10.457 10.370 12.080 20.753 15.444 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 30 31 4.0 10 3.18 32.258 28.048 0.305 LGA_LOCAL RMSD: 3.183 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.551 Number of assigned atoms: 30 Std_ASGN_ATOMS RMSD: 10.457 Standard rmsd on all 30 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.883705 * X + 0.419624 * Y + 0.207317 * Z + 10.845650 Y_new = 0.063697 * X + 0.330999 * Y + -0.941479 * Z + 22.726368 Z_new = -0.463689 * X + 0.845195 * Y + 0.265777 * Z + 10.922483 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.071955 0.482154 1.266131 [DEG: 4.1227 27.6254 72.5439 ] ZXZ: 0.216744 1.301787 -0.501781 [DEG: 12.4185 74.5869 -28.7499 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS365_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS365_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 30 31 4.0 10 3.18 28.048 10.46 REMARK ---------------------------------------------------------- MOLECULE T0537TS365_1-D2 USER MOD reduce.3.15.091106 removed 371 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFR REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2864 N SER 351 12.909 19.781 53.686 1.00 1.00 N ATOM 2865 CA SER 351 12.476 18.725 52.829 1.00 1.00 C ATOM 2866 C SER 351 11.152 18.157 53.501 1.00 1.00 C ATOM 2867 O SER 351 10.994 18.197 54.719 1.00 1.00 O ATOM 2869 CB SER 351 13.479 17.565 52.712 1.00 1.00 C ATOM 2870 OG SER 351 14.676 18.007 52.086 1.00 1.00 O ATOM 2871 N ALA 352 10.215 17.645 52.690 1.00 1.00 N ATOM 2872 CA ALA 352 8.986 17.087 53.317 1.00 1.00 C ATOM 2873 C ALA 352 8.863 15.676 52.857 1.00 1.00 C ATOM 2874 O ALA 352 9.027 15.387 51.672 1.00 1.00 O ATOM 2876 CB ALA 352 7.702 17.826 52.902 1.00 1.00 C ATOM 2877 N GLU 353 8.604 14.752 53.799 1.00 1.00 N ATOM 2878 CA GLU 353 8.432 13.384 53.408 1.00 1.00 C ATOM 2879 C GLU 353 7.130 12.946 53.981 1.00 1.00 C ATOM 2880 O GLU 353 7.013 12.789 55.194 1.00 1.00 O ATOM 2882 CB GLU 353 9.504 12.442 53.979 1.00 1.00 C ATOM 2883 CG GLU 353 10.801 12.479 53.212 1.00 1.00 C ATOM 2884 CD GLU 353 10.778 11.649 51.936 1.00 1.00 C ATOM 2885 OE1 GLU 353 10.009 10.699 51.821 1.00 1.00 O ATOM 2886 OE2 GLU 353 11.608 12.003 51.046 1.00 1.00 O ATOM 2887 N GLU 354 6.124 12.699 53.118 1.00 1.00 N ATOM 2888 CA GLU 354 4.830 12.361 53.631 1.00 1.00 C ATOM 2889 C GLU 354 4.407 11.011 53.141 1.00 1.00 C ATOM 2890 O GLU 354 4.560 10.680 51.965 1.00 1.00 O ATOM 2892 CB GLU 354 3.725 13.344 53.198 1.00 1.00 C ATOM 2893 CG GLU 354 4.040 14.788 53.468 1.00 1.00 C ATOM 2894 CD GLU 354 3.167 15.789 52.755 1.00 1.00 C ATOM 2895 OE1 GLU 354 2.200 15.411 52.075 1.00 1.00 O ATOM 2896 OE2 GLU 354 3.482 17.006 52.848 1.00 1.00 O ATOM 2897 N LEU 355 3.859 10.195 54.063 1.00 1.00 N ATOM 2898 CA LEU 355 3.271 8.931 53.722 1.00 1.00 C ATOM 2899 C LEU 355 4.206 8.111 52.891 1.00 1.00 C ATOM 2900 O LEU 355 3.811 7.607 51.841 1.00 1.00 O ATOM 2902 CB LEU 355 1.967 9.074 52.917 1.00 1.00 C ATOM 2903 CG LEU 355 0.708 8.918 53.718 1.00 1.00 C ATOM 2904 CD1 LEU 355 0.214 10.283 54.144 1.00 1.00 C ATOM 2905 CD2 LEU 355 -0.364 8.132 52.974 1.00 1.00 C ATOM 2906 N GLY 356 5.469 7.926 53.324 1.00 1.00 N ATOM 2907 CA GLY 356 6.334 7.110 52.519 1.00 1.00 C ATOM 2908 C GLY 356 6.817 5.953 53.336 1.00 1.00 C ATOM 2909 O GLY 356 6.771 5.972 54.563 1.00 1.00 O ATOM 2911 N ASN 357 7.280 4.879 52.668 1.00 1.00 N ATOM 2912 CA ASN 357 7.861 3.814 53.429 1.00 1.00 C ATOM 2913 C ASN 357 9.329 4.061 53.374 1.00 1.00 C ATOM 2914 O ASN 357 9.918 4.187 52.301 1.00 1.00 O ATOM 2916 CB ASN 357 7.546 2.395 52.917 1.00 1.00 C ATOM 2917 CG ASN 357 6.077 2.202 52.686 1.00 1.00 C ATOM 2918 OD1 ASN 357 5.614 1.914 51.581 1.00 1.00 O ATOM 2919 ND2 ASN 357 5.280 2.360 53.741 1.00 1.00 N ATOM 2920 N ILE 358 9.971 4.159 54.550 1.00 1.00 N ATOM 2921 CA ILE 358 11.340 4.547 54.498 1.00 1.00 C ATOM 2922 C ILE 358 12.199 3.481 55.056 1.00 1.00 C ATOM 2923 O ILE 358 11.821 2.754 55.971 1.00 1.00 O ATOM 2925 CB ILE 358 11.644 5.803 55.260 1.00 1.00 C ATOM 2926 CG1 ILE 358 12.969 6.488 54.888 1.00 1.00 C ATOM 2927 CG2 ILE 358 11.536 5.497 56.769 1.00 1.00 C ATOM 2928 CD1 ILE 358 12.880 7.993 54.713 1.00 1.00 C ATOM 2929 N ILE 359 13.376 3.309 54.449 1.00 1.00 N ATOM 2930 CA ILE 359 14.298 2.383 55.008 1.00 1.00 C ATOM 2931 C ILE 359 15.535 3.168 55.317 1.00 1.00 C ATOM 2932 O ILE 359 16.344 3.450 54.437 1.00 1.00 O ATOM 2934 CB ILE 359 14.588 1.248 54.081 1.00 1.00 C ATOM 2935 CG1 ILE 359 13.393 0.326 53.773 1.00 1.00 C ATOM 2936 CG2 ILE 359 15.809 0.469 54.622 1.00 1.00 C ATOM 2937 CD1 ILE 359 13.765 -1.048 53.247 1.00 1.00 C ATOM 2938 N VAL 360 15.695 3.534 56.602 1.00 1.00 N ATOM 2939 CA VAL 360 16.766 4.313 57.166 1.00 1.00 C ATOM 2940 C VAL 360 16.831 5.645 56.606 1.00 1.00 C ATOM 2941 O VAL 360 16.464 5.885 55.457 1.00 1.00 O ATOM 2943 CB VAL 360 18.145 3.701 57.102 1.00 1.00 C ATOM 2944 CG1 VAL 360 19.040 4.267 58.219 1.00 1.00 C ATOM 2945 CG2 VAL 360 17.982 2.172 57.183 1.00 1.00 C ATOM 2946 N ALA 361 17.290 6.602 57.445 1.00 1.00 N ATOM 2947 CA ALA 361 17.483 7.956 57.031 1.00 1.00 C ATOM 2948 C ALA 361 18.807 8.382 57.578 1.00 1.00 C ATOM 2949 O ALA 361 19.106 8.140 58.747 1.00 1.00 O ATOM 2951 CB ALA 361 16.429 8.926 57.590 1.00 1.00 C ATOM 2952 N TRP 362 19.650 9.012 56.738 1.00 1.00 N ATOM 2953 CA TRP 362 20.890 9.507 57.252 1.00 1.00 C ATOM 2954 C TRP 362 20.852 10.986 57.080 1.00 1.00 C ATOM 2955 O TRP 362 20.771 11.486 55.959 1.00 1.00 O ATOM 2957 CB TRP 362 22.149 8.994 56.527 1.00 1.00 C ATOM 2958 CG TRP 362 21.958 7.584 56.078 1.00 1.00 C ATOM 2959 CD1 TRP 362 21.532 7.195 54.821 1.00 1.00 C ATOM 2960 CD2 TRP 362 22.108 6.416 56.848 1.00 1.00 C ATOM 2961 NE1 TRP 362 21.416 5.819 54.776 1.00 1.00 N ATOM 2962 CE2 TRP 362 21.777 5.317 56.019 1.00 1.00 C ATOM 2963 CE3 TRP 362 22.520 6.140 58.165 1.00 1.00 C ATOM 2964 CZ2 TRP 362 21.809 3.995 56.490 1.00 1.00 C ATOM 2965 CZ3 TRP 362 22.547 4.827 58.615 1.00 1.00 C ATOM 2966 CH2 TRP 362 22.197 3.787 57.773 1.00 1.00 H ATOM 2967 N ASN 363 20.899 11.734 58.199 1.00 1.00 N ATOM 2968 CA ASN 363 20.821 13.154 58.054 1.00 1.00 C ATOM 2969 C ASN 363 22.069 13.797 58.570 1.00 1.00 C ATOM 2970 O ASN 363 22.271 13.970 59.772 1.00 1.00 O ATOM 2972 CB ASN 363 19.600 13.770 58.771 1.00 1.00 C ATOM 2973 CG ASN 363 19.694 15.275 58.853 1.00 1.00 C ATOM 2974 OD1 ASN 363 19.760 15.927 57.804 1.00 1.00 O ATOM 2975 ND2 ASN 363 19.721 15.781 60.065 1.00 1.00 N ATOM 2976 N PRO 364 22.906 14.081 57.697 1.00 1.00 N ATOM 2977 CA PRO 364 24.066 14.838 58.086 1.00 1.00 C ATOM 2978 C PRO 364 23.889 16.329 58.074 1.00 1.00 C ATOM 2979 O PRO 364 23.088 16.843 57.294 1.00 1.00 O ATOM 2980 CB PRO 364 25.229 14.330 57.200 1.00 1.00 C ATOM 2981 CG PRO 364 24.621 13.291 56.307 1.00 1.00 C ATOM 2982 CD PRO 364 23.677 12.587 57.252 1.00 1.00 C ATOM 2983 N ASN 365 24.652 17.023 58.944 1.00 1.00 N ATOM 2984 CA ASN 365 24.710 18.504 59.079 1.00 1.00 C ATOM 2985 C ASN 365 23.367 19.134 58.916 1.00 1.00 C ATOM 2986 O ASN 365 23.147 19.907 57.983 1.00 1.00 O ATOM 2988 CB ASN 365 25.733 19.185 58.145 1.00 1.00 C ATOM 2989 CG ASN 365 27.079 18.530 58.230 1.00 1.00 C ATOM 2990 OD1 ASN 365 27.719 18.468 59.282 1.00 1.00 O ATOM 2991 ND2 ASN 365 27.564 18.013 57.104 1.00 1.00 N ATOM 2992 N LEU 366 22.421 18.841 59.828 1.00 1.00 N ATOM 2993 CA LEU 366 21.073 19.480 59.692 1.00 1.00 C ATOM 2994 C LEU 366 21.220 20.943 59.982 1.00 1.00 C ATOM 2995 O LEU 366 21.872 21.336 60.948 1.00 1.00 O ATOM 2997 CB LEU 366 20.017 18.924 60.662 1.00 1.00 C ATOM 2998 CG LEU 366 18.615 18.902 60.128 1.00 1.00 C ATOM 2999 CD1 LEU 366 18.609 18.247 58.762 1.00 1.00 C ATOM 3000 CD2 LEU 366 17.636 18.231 61.083 1.00 1.00 C ATOM 3001 N TRP 367 20.606 21.788 59.133 1.00 1.00 N ATOM 3002 CA TRP 367 20.675 23.208 59.328 1.00 1.00 C ATOM 3003 C TRP 367 19.692 23.608 60.378 1.00 1.00 C ATOM 3004 O TRP 367 18.676 22.947 60.588 1.00 1.00 O ATOM 3006 CB TRP 367 20.401 24.022 58.048 1.00 1.00 C ATOM 3007 CG TRP 367 21.616 24.071 57.186 1.00 1.00 C ATOM 3008 CD1 TRP 367 22.921 24.125 57.643 1.00 1.00 C ATOM 3009 CD2 TRP 367 21.664 24.137 55.780 1.00 1.00 C ATOM 3010 NE1 TRP 367 23.785 24.217 56.569 1.00 1.00 N ATOM 3011 CE2 TRP 367 23.026 24.216 55.407 1.00 1.00 C ATOM 3012 CE3 TRP 367 20.704 24.110 54.752 1.00 1.00 C ATOM 3013 CZ2 TRP 367 23.424 24.311 54.062 1.00 1.00 C ATOM 3014 CZ3 TRP 367 21.113 24.202 53.428 1.00 1.00 C ATOM 3015 CH2 TRP 367 22.456 24.298 53.113 1.00 1.00 H ATOM 3016 N LYS 368 20.000 24.711 61.089 1.00 1.00 N ATOM 3017 CA LYS 368 19.180 25.170 62.171 1.00 1.00 C ATOM 3018 C LYS 368 17.952 25.819 61.620 1.00 1.00 C ATOM 3019 O LYS 368 17.957 26.375 60.523 1.00 1.00 O ATOM 3021 CB LYS 368 19.881 26.181 63.093 1.00 1.00 C ATOM 3022 CG LYS 368 20.287 27.454 62.402 1.00 1.00 C ATOM 3023 CD LYS 368 20.965 28.405 63.339 1.00 1.00 C ATOM 3024 CE LYS 368 21.725 29.549 62.786 1.00 1.00 C ATOM 3025 NZ LYS 368 22.347 30.413 63.858 1.00 1.00 N ATOM 3026 N LYS 369 16.860 25.753 62.405 1.00 1.00 N ATOM 3027 CA LYS 369 15.583 26.290 62.032 1.00 1.00 C ATOM 3028 C LYS 369 15.163 25.655 60.863 1.00 1.00 C ATOM 3029 O LYS 369 14.474 26.247 60.037 1.00 1.00 O ATOM 3031 CB LYS 369 15.582 27.810 61.786 1.00 1.00 C ATOM 3032 CG LYS 369 15.473 28.627 63.046 1.00 1.00 C ATOM 3033 CD LYS 369 15.475 30.096 62.753 1.00 1.00 C ATOM 3034 CE LYS 369 16.707 30.728 62.232 1.00 1.00 C ATOM 3035 NZ LYS 369 16.550 32.210 61.989 1.00 1.00 N ATOM 3036 N GLY 370 15.540 24.371 60.704 1.00 1.00 N ATOM 3037 CA GLY 370 15.061 23.624 59.579 1.00 1.00 C ATOM 3038 C GLY 370 14.756 22.253 60.082 1.00 1.00 C ATOM 3039 O GLY 370 15.571 21.640 60.772 1.00 1.00 O ATOM 3041 N THR 371 13.564 21.729 59.740 1.00 1.00 N ATOM 3042 CA THR 371 13.199 20.423 60.201 1.00 1.00 C ATOM 3043 C THR 371 12.508 19.720 59.076 1.00 1.00 C ATOM 3044 O THR 371 12.032 20.349 58.133 1.00 1.00 O ATOM 3046 CB THR 371 12.246 20.470 61.365 1.00 1.00 C ATOM 3047 OG1 THR 371 11.410 21.612 61.254 1.00 1.00 O ATOM 3048 CG2 THR 371 13.038 20.538 62.683 1.00 1.00 C ATOM 3049 N ASN 372 12.455 18.376 59.151 1.00 1.00 N ATOM 3050 CA ASN 372 11.749 17.595 58.179 1.00 1.00 C ATOM 3051 C ASN 372 10.511 17.124 58.872 1.00 1.00 C ATOM 3052 O ASN 372 10.481 17.029 60.098 1.00 1.00 O ATOM 3054 CB ASN 372 12.515 16.344 57.714 1.00 1.00 C ATOM 3055 CG ASN 372 13.555 16.678 56.686 1.00 1.00 C ATOM 3056 OD1 ASN 372 13.406 16.422 55.489 1.00 1.00 O ATOM 3057 ND2 ASN 372 14.664 17.270 57.123 1.00 1.00 N ATOM 3058 N GLY 373 9.437 16.840 58.106 1.00 1.00 N ATOM 3059 CA GLY 373 8.228 16.416 58.748 1.00 1.00 C ATOM 3060 C GLY 373 8.037 14.970 58.449 1.00 1.00 C ATOM 3061 O GLY 373 8.048 14.552 57.291 1.00 1.00 O ATOM 3063 N TYR 374 7.838 14.160 59.508 1.00 1.00 N ATOM 3064 CA TYR 374 7.680 12.756 59.285 1.00 1.00 C ATOM 3065 C TYR 374 6.352 12.308 59.812 1.00 1.00 C ATOM 3066 O TYR 374 6.079 12.398 61.008 1.00 1.00 O ATOM 3068 CB TYR 374 8.694 11.878 60.045 1.00 1.00 C ATOM 3069 CG TYR 374 9.862 11.574 59.120 1.00 1.00 C ATOM 3070 CD1 TYR 374 9.697 10.999 57.878 1.00 1.00 C ATOM 3071 CD2 TYR 374 11.170 11.840 59.526 1.00 1.00 C ATOM 3072 CE1 TYR 374 10.767 10.678 57.052 1.00 1.00 C ATOM 3073 CE2 TYR 374 12.262 11.490 58.747 1.00 1.00 C ATOM 3074 CZ TYR 374 12.050 10.902 57.518 1.00 1.00 C ATOM 3075 OH TYR 374 13.110 10.488 56.749 1.00 1.00 H ATOM 3076 N PRO 375 5.520 11.850 58.920 1.00 1.00 N ATOM 3077 CA PRO 375 4.347 11.149 59.360 1.00 1.00 C ATOM 3078 C PRO 375 4.866 9.815 59.800 1.00 1.00 C ATOM 3079 O PRO 375 5.986 9.481 59.422 1.00 1.00 O ATOM 3080 CB PRO 375 3.388 11.139 58.177 1.00 1.00 C ATOM 3081 CG PRO 375 4.111 11.869 57.094 1.00 1.00 C ATOM 3082 CD PRO 375 5.600 11.642 57.340 1.00 1.00 C ATOM 3083 N ILE 376 4.057 9.008 60.512 1.00 1.00 N ATOM 3084 CA ILE 376 4.593 7.888 61.237 1.00 1.00 C ATOM 3085 C ILE 376 5.435 6.978 60.403 1.00 1.00 C ATOM 3086 O ILE 376 6.551 6.687 60.821 1.00 1.00 O ATOM 3088 CB ILE 376 3.533 7.043 61.885 1.00 1.00 C ATOM 3089 CG1 ILE 376 2.396 7.827 62.558 1.00 1.00 C ATOM 3090 CG2 ILE 376 4.223 6.052 62.844 1.00 1.00 C ATOM 3091 CD1 ILE 376 2.769 8.473 63.881 1.00 1.00 C ATOM 3092 N PHE 377 4.961 6.519 59.230 1.00 1.00 N ATOM 3093 CA PHE 377 5.714 5.642 58.364 1.00 1.00 C ATOM 3094 C PHE 377 6.151 4.402 59.094 1.00 1.00 C ATOM 3095 O PHE 377 5.978 4.278 60.307 1.00 1.00 O ATOM 3097 CB PHE 377 6.915 6.297 57.639 1.00 1.00 C ATOM 3098 CG PHE 377 8.170 6.545 58.420 1.00 1.00 C ATOM 3099 CD1 PHE 377 8.854 5.494 59.005 1.00 1.00 C ATOM 3100 CD2 PHE 377 8.678 7.862 58.565 1.00 1.00 C ATOM 3101 CE1 PHE 377 10.075 5.688 59.747 1.00 1.00 C ATOM 3102 CE2 PHE 377 9.890 8.064 59.313 1.00 1.00 C ATOM 3103 CZ PHE 377 10.572 6.993 59.865 1.00 1.00 C ATOM 3104 N GLN 378 6.689 3.413 58.346 1.00 1.00 N ATOM 3105 CA GLN 378 7.111 2.182 58.955 1.00 1.00 C ATOM 3106 C GLN 378 8.525 1.901 58.572 1.00 1.00 C ATOM 3107 O GLN 378 9.128 2.619 57.776 1.00 1.00 O ATOM 3109 CB GLN 378 6.300 0.951 58.519 1.00 1.00 C ATOM 3110 CG GLN 378 4.826 0.917 58.911 1.00 1.00 C ATOM 3111 CD GLN 378 4.633 0.847 60.416 1.00 1.00 C ATOM 3112 OE1 GLN 378 5.363 0.144 61.119 1.00 1.00 O ATOM 3113 NE2 GLN 378 3.663 1.581 60.921 1.00 1.00 N ATOM 3114 N TRP 379 9.101 0.847 59.187 1.00 1.00 N ATOM 3115 CA TRP 379 10.449 0.455 58.912 1.00 1.00 C ATOM 3116 C TRP 379 11.362 1.163 59.853 1.00 1.00 C ATOM 3117 O TRP 379 10.936 2.061 60.579 1.00 1.00 O ATOM 3119 CB TRP 379 11.110 0.091 57.575 1.00 1.00 C ATOM 3120 CG TRP 379 10.509 -1.153 57.007 1.00 1.00 C ATOM 3121 CD1 TRP 379 10.506 -2.393 57.620 1.00 1.00 C ATOM 3122 CD2 TRP 379 9.915 -1.313 55.741 1.00 1.00 C ATOM 3123 NE1 TRP 379 9.922 -3.323 56.782 1.00 1.00 N ATOM 3124 CE2 TRP 379 9.542 -2.671 55.617 1.00 1.00 C ATOM 3125 CE3 TRP 379 9.614 -0.451 54.669 1.00 1.00 C ATOM 3126 CZ2 TRP 379 8.931 -3.171 54.455 1.00 1.00 C ATOM 3127 CZ3 TRP 379 9.008 -0.960 53.529 1.00 1.00 C ATOM 3128 CH2 TRP 379 8.678 -2.301 53.447 1.00 1.00 H ATOM 3129 N SER 380 12.642 0.754 59.908 1.00 1.00 N ATOM 3130 CA SER 380 13.482 1.378 60.884 1.00 1.00 C ATOM 3131 C SER 380 14.199 0.353 61.694 1.00 1.00 C ATOM 3132 O SER 380 13.603 -0.435 62.430 1.00 1.00 O ATOM 3134 CB SER 380 13.546 2.704 61.661 1.00 1.00 C ATOM 3135 OG SER 380 13.060 3.765 60.850 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 244 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 111.33 20.7 58 96.7 60 ARMSMC SECONDARY STRUCTURE . . 123.97 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 113.38 18.8 48 96.0 50 ARMSMC BURIED . . . . . . . . 100.92 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.90 60.0 25 96.2 26 ARMSSC1 RELIABLE SIDE CHAINS . 66.89 62.5 24 96.0 25 ARMSSC1 SECONDARY STRUCTURE . . 51.42 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 69.65 59.1 22 95.7 23 ARMSSC1 BURIED . . . . . . . . 24.81 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.57 33.3 21 95.5 22 ARMSSC2 RELIABLE SIDE CHAINS . 73.93 33.3 15 93.8 16 ARMSSC2 SECONDARY STRUCTURE . . 83.17 14.3 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 80.06 31.6 19 95.0 20 ARMSSC2 BURIED . . . . . . . . 26.12 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 55.44 60.0 5 83.3 6 ARMSSC3 RELIABLE SIDE CHAINS . 49.40 75.0 4 80.0 5 ARMSSC3 SECONDARY STRUCTURE . . 12.10 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 55.44 60.0 5 83.3 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.47 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.47 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.47 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.46 (Number of atoms: 30) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.46 30 96.8 31 CRMSCA CRN = ALL/NP . . . . . 0.3486 CRMSCA SECONDARY STRUCTURE . . 6.21 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.79 25 96.2 26 CRMSCA BURIED . . . . . . . . 8.58 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.62 147 96.7 152 CRMSMC SECONDARY STRUCTURE . . 6.30 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.95 124 96.1 129 CRMSMC BURIED . . . . . . . . 8.63 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.61 124 95.4 130 CRMSSC RELIABLE SIDE CHAINS . 13.95 108 94.7 114 CRMSSC SECONDARY STRUCTURE . . 9.65 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.82 114 95.0 120 CRMSSC BURIED . . . . . . . . 10.92 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.13 244 96.1 254 CRMSALL SECONDARY STRUCTURE . . 7.97 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.47 214 95.5 224 CRMSALL BURIED . . . . . . . . 9.33 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.467 0.768 0.384 30 96.8 31 ERRCA SECONDARY STRUCTURE . . 4.961 0.697 0.348 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.697 0.767 0.384 25 96.2 26 ERRCA BURIED . . . . . . . . 7.319 0.773 0.387 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.594 0.766 0.383 147 96.7 152 ERRMC SECONDARY STRUCTURE . . 4.982 0.690 0.345 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.851 0.768 0.384 124 96.1 129 ERRMC BURIED . . . . . . . . 7.209 0.756 0.378 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.532 0.830 0.415 124 95.4 130 ERRSC RELIABLE SIDE CHAINS . 11.855 0.833 0.417 108 94.7 114 ERRSC SECONDARY STRUCTURE . . 8.174 0.786 0.393 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.721 0.832 0.416 114 95.0 120 ERRSC BURIED . . . . . . . . 9.375 0.808 0.404 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.958 0.794 0.397 244 96.1 254 ERRALL SECONDARY STRUCTURE . . 6.388 0.731 0.365 85 100.0 85 ERRALL SURFACE . . . . . . . . 10.262 0.798 0.399 214 95.5 224 ERRALL BURIED . . . . . . . . 7.784 0.769 0.384 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 17 30 31 DISTCA CA (P) 0.00 0.00 3.23 16.13 54.84 31 DISTCA CA (RMS) 0.00 0.00 2.71 4.14 6.48 DISTCA ALL (N) 0 2 4 25 118 244 254 DISTALL ALL (P) 0.00 0.79 1.57 9.84 46.46 254 DISTALL ALL (RMS) 0.00 1.60 2.12 3.85 7.06 DISTALL END of the results output