####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS361_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS361_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 355 - 371 4.98 9.03 LCS_AVERAGE: 49.01 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 365 - 370 1.96 13.35 LONGEST_CONTINUOUS_SEGMENT: 6 369 - 374 1.95 15.31 LCS_AVERAGE: 16.13 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.94 17.16 LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.92 11.92 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.94 13.66 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.89 12.29 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 0.67 7.71 LCS_AVERAGE: 11.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 0 3 3 5 5 6 7 9 10 12 13 14 16 19 19 23 27 28 30 30 LCS_GDT A 352 A 352 3 3 9 1 3 4 5 5 8 10 11 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT E 353 E 353 3 3 12 0 3 4 6 6 8 10 11 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT E 354 E 354 3 4 12 0 3 3 4 4 7 10 11 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT L 355 L 355 3 4 17 0 3 3 6 6 8 10 11 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT G 356 G 356 3 4 17 0 3 3 4 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT N 357 N 357 3 4 17 1 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT I 358 I 358 3 5 17 2 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT I 359 I 359 3 5 17 3 3 3 4 5 7 11 11 14 14 15 16 18 20 21 25 27 28 30 30 LCS_GDT V 360 V 360 3 5 17 3 3 3 4 5 5 6 7 10 12 15 16 18 19 21 25 27 28 30 30 LCS_GDT A 361 A 361 3 5 17 3 3 6 7 8 8 9 10 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT W 362 W 362 4 5 17 3 3 4 4 5 5 7 10 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT N 363 N 363 4 5 17 3 4 5 7 8 8 9 10 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT P 364 P 364 4 5 17 3 3 4 4 5 7 8 10 12 13 15 16 19 20 22 25 27 28 30 30 LCS_GDT N 365 N 365 4 6 17 3 3 4 5 6 7 9 9 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT L 366 L 366 4 6 17 3 3 4 5 6 7 9 9 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT W 367 W 367 4 6 17 3 3 4 5 6 7 9 9 11 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT K 368 K 368 4 6 17 3 4 4 5 5 7 9 9 11 13 14 16 18 19 21 23 23 25 26 29 LCS_GDT K 369 K 369 4 6 17 1 4 4 5 6 7 9 9 11 13 14 16 18 19 21 23 24 28 30 30 LCS_GDT G 370 G 370 3 6 17 2 4 4 5 6 7 9 9 11 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT T 371 T 371 3 6 17 3 3 3 4 5 8 10 11 12 13 14 16 19 20 22 25 27 28 30 30 LCS_GDT N 372 N 372 3 6 15 3 3 4 5 5 6 10 11 12 12 14 16 18 19 21 23 27 28 30 30 LCS_GDT G 373 G 373 4 6 15 3 3 4 4 5 6 6 9 9 9 13 14 16 19 21 25 27 28 30 30 LCS_GDT Y 374 Y 374 4 6 15 3 3 4 5 5 8 10 11 12 13 15 16 19 20 22 25 27 28 30 30 LCS_GDT P 375 P 375 4 5 15 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT I 376 I 376 4 5 15 3 3 4 6 6 8 11 11 14 14 15 16 18 19 21 25 27 28 30 30 LCS_GDT F 377 F 377 4 5 13 3 3 4 6 6 9 11 11 14 14 15 16 18 19 21 25 27 28 30 30 LCS_GDT Q 378 Q 378 4 5 13 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT W 379 W 379 4 5 13 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT S 380 S 380 4 5 13 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_GDT E 381 E 381 4 5 13 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 LCS_AVERAGE LCS_A: 25.53 ( 11.45 16.13 49.01 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 6 7 8 9 11 11 14 14 15 16 19 20 22 25 27 28 30 30 GDT PERCENT_AT 9.68 12.90 19.35 22.58 25.81 29.03 35.48 35.48 45.16 45.16 48.39 51.61 61.29 64.52 70.97 80.65 87.10 90.32 96.77 96.77 GDT RMS_LOCAL 0.02 0.56 1.03 1.26 1.53 1.91 2.55 2.55 3.22 3.22 3.40 3.62 4.99 5.26 5.60 6.00 6.18 6.33 6.65 6.65 GDT RMS_ALL_AT 12.85 15.53 8.44 8.89 8.61 8.75 9.05 9.05 9.23 9.23 9.41 9.03 7.46 7.25 7.00 7.04 7.01 6.94 6.86 6.86 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 16.572 0 0.438 0.661 18.611 0.000 0.000 LGA A 352 A 352 11.015 0 0.632 0.606 13.050 0.000 0.000 LGA E 353 E 353 10.701 0 0.612 0.926 14.346 0.000 0.000 LGA E 354 E 354 10.274 0 0.616 1.166 17.138 0.357 0.159 LGA L 355 L 355 6.807 0 0.645 0.677 11.995 21.071 11.845 LGA G 356 G 356 2.578 0 0.613 0.613 3.428 55.476 55.476 LGA N 357 N 357 2.614 0 0.584 0.679 5.632 65.119 47.857 LGA I 358 I 358 2.432 0 0.619 0.624 6.175 62.976 49.226 LGA I 359 I 359 3.566 0 0.533 1.457 10.527 45.595 27.976 LGA V 360 V 360 6.944 0 0.274 0.303 10.755 14.524 8.571 LGA A 361 A 361 7.120 0 0.670 0.602 8.474 16.429 14.095 LGA W 362 W 362 6.032 0 0.072 1.194 14.977 18.333 6.054 LGA N 363 N 363 8.129 0 0.259 1.002 10.931 7.381 4.405 LGA P 364 P 364 10.595 0 0.698 0.682 13.500 0.000 0.000 LGA N 365 N 365 12.136 0 0.707 1.235 14.829 0.000 0.000 LGA L 366 L 366 11.133 0 0.604 1.334 12.061 0.000 0.000 LGA W 367 W 367 12.006 0 0.071 1.248 14.146 0.000 0.714 LGA K 368 K 368 15.932 0 0.645 1.033 19.951 0.000 0.000 LGA K 369 K 369 14.610 0 0.073 0.645 24.193 0.000 0.000 LGA G 370 G 370 10.558 0 0.614 0.614 13.006 0.000 0.000 LGA T 371 T 371 11.644 0 0.635 0.590 13.895 0.000 0.476 LGA N 372 N 372 13.638 0 0.262 1.016 13.927 0.000 0.000 LGA G 373 G 373 11.875 0 0.679 0.679 12.143 0.238 0.238 LGA Y 374 Y 374 5.756 0 0.215 1.198 8.342 27.262 16.825 LGA P 375 P 375 0.692 0 0.670 0.656 4.044 66.310 62.585 LGA I 376 I 376 3.890 0 0.326 1.320 10.117 61.429 34.048 LGA F 377 F 377 2.870 0 0.090 1.082 10.977 52.619 23.420 LGA Q 378 Q 378 2.917 0 0.634 1.004 11.058 65.119 33.175 LGA W 379 W 379 1.115 0 0.638 1.385 9.523 77.381 39.456 LGA S 380 S 380 1.643 0 0.112 0.651 4.343 72.976 65.635 LGA E 381 E 381 1.823 0 0.652 1.173 5.153 57.262 68.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 6.848 6.727 8.438 25.415 18.410 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.55 37.903 32.244 0.415 LGA_LOCAL RMSD: 2.554 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.047 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.848 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.684633 * X + 0.503381 * Y + 0.527148 * Z + -7.711159 Y_new = 0.487829 * X + -0.853810 * Y + 0.181746 * Z + -11.157911 Z_new = 0.541572 * X + 0.132729 * Y + -0.830110 * Z + 11.028730 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.619093 -0.572306 2.983042 [DEG: 35.4714 -32.7907 170.9157 ] ZXZ: 1.902807 2.550102 1.330453 [DEG: 109.0228 146.1101 76.2294 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS361_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS361_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.55 32.244 6.85 REMARK ---------------------------------------------------------- MOLECULE T0537TS361_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 6.546 30.062 45.906 1.00 21.42 N ATOM 2530 CA SER 351 5.592 29.219 46.557 1.00 21.32 C ATOM 2531 C SER 351 6.106 27.819 46.615 1.00 21.21 C ATOM 2532 O SER 351 5.475 26.892 46.109 1.00 21.03 O ATOM 2533 CB SER 351 4.220 29.233 45.858 1.00 21.36 C ATOM 2534 OG SER 351 3.283 28.464 46.595 1.00 23.16 O ATOM 2535 N ALA 352 7.289 27.628 47.230 1.00 21.38 N ATOM 2536 CA ALA 352 7.795 26.297 47.370 1.00 21.31 C ATOM 2537 C ALA 352 7.478 25.882 48.769 1.00 21.50 C ATOM 2538 O ALA 352 7.747 26.615 49.720 1.00 21.89 O ATOM 2539 CB ALA 352 9.319 26.198 47.191 1.00 21.50 C ATOM 2540 N GLU 353 6.872 24.691 48.935 1.00 21.36 N ATOM 2541 CA GLU 353 6.555 24.256 50.261 1.00 21.77 C ATOM 2542 C GLU 353 7.285 22.981 50.504 1.00 21.72 C ATOM 2543 O GLU 353 7.339 22.110 49.638 1.00 21.76 O ATOM 2544 CB GLU 353 5.055 24.009 50.498 1.00 22.76 C ATOM 2545 CG GLU 353 4.246 25.307 50.507 1.00 25.03 C ATOM 2546 CD GLU 353 2.783 24.984 50.765 1.00 33.42 C ATOM 2547 OE1 GLU 353 2.404 23.789 50.646 1.00 71.85 O ATOM 2548 OE2 GLU 353 2.023 25.936 51.086 1.00 64.33 O ATOM 2549 N GLU 354 7.890 22.853 51.700 1.00 21.99 N ATOM 2550 CA GLU 354 8.631 21.661 51.972 1.00 22.30 C ATOM 2551 C GLU 354 8.268 21.156 53.329 1.00 22.44 C ATOM 2552 O GLU 354 8.208 21.910 54.300 1.00 22.88 O ATOM 2553 CB GLU 354 10.147 21.889 51.977 1.00 23.95 C ATOM 2554 CG GLU 354 10.679 22.268 50.598 1.00 26.38 C ATOM 2555 CD GLU 354 12.148 22.614 50.747 1.00 34.67 C ATOM 2556 OE1 GLU 354 12.459 23.526 51.557 1.00 56.28 O ATOM 2557 OE2 GLU 354 12.981 21.974 50.053 1.00 40.39 O ATOM 2558 N LEU 355 7.988 19.841 53.405 1.00 22.43 N ATOM 2559 CA LEU 355 7.701 19.165 54.635 1.00 22.93 C ATOM 2560 C LEU 355 8.204 17.770 54.446 1.00 22.58 C ATOM 2561 O LEU 355 8.305 17.290 53.317 1.00 22.16 O ATOM 2562 CB LEU 355 6.202 19.059 54.964 1.00 23.76 C ATOM 2563 CG LEU 355 5.542 20.399 55.332 1.00 25.10 C ATOM 2564 CD1 LEU 355 4.050 20.209 55.647 1.00 27.28 C ATOM 2565 CD2 LEU 355 6.294 21.102 56.477 1.00 27.28 C ATOM 2566 N GLY 356 8.545 17.082 55.549 1.00 22.87 N ATOM 2567 CA GLY 356 9.013 15.731 55.431 1.00 22.75 C ATOM 2568 C GLY 356 10.502 15.779 55.431 1.00 22.75 C ATOM 2569 O GLY 356 11.094 16.821 55.162 1.00 22.67 O ATOM 2570 N ASN 357 11.156 14.636 55.725 1.00 22.90 N ATOM 2571 CA ASN 357 12.584 14.676 55.806 1.00 23.08 C ATOM 2572 C ASN 357 13.180 13.583 54.981 1.00 22.88 C ATOM 2573 O ASN 357 12.595 12.519 54.793 1.00 22.99 O ATOM 2574 CB ASN 357 13.111 14.512 57.242 1.00 24.05 C ATOM 2575 CG ASN 357 12.740 15.759 58.036 1.00 25.27 C ATOM 2576 OD1 ASN 357 13.342 16.820 57.876 1.00 28.53 O ATOM 2577 ND2 ASN 357 11.715 15.628 58.920 1.00 29.02 N ATOM 2578 N ILE 358 14.392 13.866 54.464 1.00 22.73 N ATOM 2579 CA ILE 358 15.180 12.982 53.658 1.00 22.64 C ATOM 2580 C ILE 358 16.461 12.802 54.404 1.00 22.86 C ATOM 2581 O ILE 358 16.981 13.751 54.985 1.00 23.10 O ATOM 2582 CB ILE 358 15.503 13.598 52.327 1.00 22.54 C ATOM 2583 CG1 ILE 358 14.225 13.703 51.477 1.00 22.73 C ATOM 2584 CG2 ILE 358 16.669 12.842 51.671 1.00 22.60 C ATOM 2585 CD1 ILE 358 14.378 14.572 50.230 1.00 23.53 C ATOM 2586 N ILE 359 17.002 11.570 54.450 1.00 22.84 N ATOM 2587 CA ILE 359 18.209 11.405 55.206 1.00 23.53 C ATOM 2588 C ILE 359 19.148 10.456 54.522 1.00 23.11 C ATOM 2589 O ILE 359 18.846 9.890 53.472 1.00 22.57 O ATOM 2590 CB ILE 359 17.975 10.916 56.610 1.00 24.78 C ATOM 2591 CG1 ILE 359 17.269 9.550 56.603 1.00 25.04 C ATOM 2592 CG2 ILE 359 17.220 12.010 57.383 1.00 25.81 C ATOM 2593 CD1 ILE 359 17.215 8.893 57.982 1.00 27.85 C ATOM 2594 N VAL 360 20.341 10.297 55.137 1.00 23.45 N ATOM 2595 CA VAL 360 21.394 9.395 54.750 1.00 23.13 C ATOM 2596 C VAL 360 22.116 9.880 53.510 1.00 22.92 C ATOM 2597 O VAL 360 22.842 9.135 52.853 1.00 22.60 O ATOM 2598 CB VAL 360 20.842 7.990 54.597 1.00 22.96 C ATOM 2599 CG1 VAL 360 21.926 6.970 54.200 1.00 23.82 C ATOM 2600 CG2 VAL 360 20.137 7.637 55.916 1.00 24.39 C ATOM 2601 N ALA 361 22.002 11.174 53.159 1.00 23.48 N ATOM 2602 CA ALA 361 22.805 11.605 52.048 1.00 23.60 C ATOM 2603 C ALA 361 24.134 11.992 52.626 1.00 24.30 C ATOM 2604 O ALA 361 24.211 12.817 53.532 1.00 24.56 O ATOM 2605 CB ALA 361 22.237 12.833 51.319 1.00 23.98 C ATOM 2606 N TRP 362 25.226 11.371 52.139 1.00 24.73 N ATOM 2607 CA TRP 362 26.524 11.663 52.675 1.00 25.97 C ATOM 2608 C TRP 362 26.933 13.058 52.329 1.00 25.92 C ATOM 2609 O TRP 362 27.352 13.826 53.194 1.00 26.44 O ATOM 2610 CB TRP 362 27.616 10.720 52.148 1.00 27.16 C ATOM 2611 CG TRP 362 28.985 10.989 52.726 1.00 31.40 C ATOM 2612 CD1 TRP 362 29.492 10.622 53.936 1.00 36.71 C ATOM 2613 CD2 TRP 362 30.033 11.699 52.045 1.00 37.23 C ATOM 2614 NE1 TRP 362 30.787 11.065 54.057 1.00 40.19 N ATOM 2615 CE2 TRP 362 31.135 11.727 52.899 1.00 40.37 C ATOM 2616 CE3 TRP 362 30.075 12.279 50.811 1.00 43.18 C ATOM 2617 CZ2 TRP 362 32.299 12.341 52.533 1.00 47.43 C ATOM 2618 CZ3 TRP 362 31.254 12.893 50.446 1.00 51.57 C ATOM 2619 CH2 TRP 362 32.344 12.926 51.288 1.00 52.99 H ATOM 2620 N ASN 363 26.804 13.426 51.041 1.00 25.40 N ATOM 2621 CA ASN 363 27.234 14.719 50.601 1.00 25.56 C ATOM 2622 C ASN 363 26.257 15.726 51.096 1.00 24.40 C ATOM 2623 O ASN 363 25.079 15.440 51.303 1.00 23.80 O ATOM 2624 CB ASN 363 27.305 14.867 49.070 1.00 26.03 C ATOM 2625 CG ASN 363 28.553 14.161 48.564 1.00 29.19 C ATOM 2626 OD1 ASN 363 29.666 14.533 48.930 1.00 41.90 O ATOM 2627 ND2 ASN 363 28.371 13.127 47.700 1.00 35.87 N ATOM 2628 N PRO 364 26.743 16.913 51.311 1.00 24.99 N ATOM 2629 CA PRO 364 25.887 17.968 51.754 1.00 24.42 C ATOM 2630 C PRO 364 25.001 18.392 50.633 1.00 23.62 C ATOM 2631 O PRO 364 25.455 18.440 49.491 1.00 24.03 O ATOM 2632 CB PRO 364 26.804 19.067 52.301 1.00 25.23 C ATOM 2633 CG PRO 364 28.218 18.660 51.842 1.00 39.39 C ATOM 2634 CD PRO 364 28.127 17.134 51.691 1.00 28.59 C ATOM 2635 N ASN 365 23.733 18.707 50.942 1.00 23.14 N ATOM 2636 CA ASN 365 22.813 19.108 49.924 1.00 22.98 C ATOM 2637 C ASN 365 23.046 20.553 49.654 1.00 23.18 C ATOM 2638 O ASN 365 23.483 21.299 50.528 1.00 23.82 O ATOM 2639 CB ASN 365 21.345 18.965 50.343 1.00 24.08 C ATOM 2640 CG ASN 365 21.145 19.898 51.527 1.00 26.53 C ATOM 2641 OD1 ASN 365 20.691 21.030 51.384 1.00 35.64 O ATOM 2642 ND2 ASN 365 21.513 19.423 52.744 1.00 32.05 N ATOM 2643 N LEU 366 22.785 20.989 48.411 1.00 22.89 N ATOM 2644 CA LEU 366 22.967 22.381 48.139 1.00 23.16 C ATOM 2645 C LEU 366 21.759 22.833 47.381 1.00 22.80 C ATOM 2646 O LEU 366 21.392 22.229 46.375 1.00 22.59 O ATOM 2647 CB LEU 366 24.237 22.647 47.303 1.00 24.03 C ATOM 2648 CG LEU 366 24.659 24.123 47.144 1.00 30.70 C ATOM 2649 CD1 LEU 366 25.967 24.228 46.348 1.00 40.48 C ATOM 2650 CD2 LEU 366 23.556 24.995 46.528 1.00 43.53 C ATOM 2651 N TRP 367 21.073 23.890 47.866 1.00 22.92 N ATOM 2652 CA TRP 367 19.960 24.371 47.101 1.00 22.65 C ATOM 2653 C TRP 367 19.885 25.862 47.251 1.00 22.82 C ATOM 2654 O TRP 367 19.958 26.402 48.353 1.00 23.04 O ATOM 2655 CB TRP 367 18.605 23.749 47.502 1.00 22.56 C ATOM 2656 CG TRP 367 17.459 24.121 46.582 1.00 22.40 C ATOM 2657 CD1 TRP 367 17.417 25.078 45.613 1.00 22.43 C ATOM 2658 CD2 TRP 367 16.172 23.486 46.570 1.00 22.84 C ATOM 2659 NE1 TRP 367 16.185 25.089 45.008 1.00 22.36 N ATOM 2660 CE2 TRP 367 15.408 24.113 45.586 1.00 22.56 C ATOM 2661 CE3 TRP 367 15.665 22.464 47.311 1.00 23.94 C ATOM 2662 CZ2 TRP 367 14.124 23.725 45.333 1.00 23.11 C ATOM 2663 CZ3 TRP 367 14.368 22.077 47.060 1.00 24.67 C ATOM 2664 CH2 TRP 367 13.611 22.697 46.089 1.00 24.19 H ATOM 2665 N LYS 368 19.761 26.555 46.103 1.00 22.83 N ATOM 2666 CA LYS 368 19.692 27.982 45.966 1.00 23.18 C ATOM 2667 C LYS 368 18.408 28.545 46.508 1.00 23.06 C ATOM 2668 O LYS 368 18.403 29.670 47.005 1.00 23.71 O ATOM 2669 CB LYS 368 19.798 28.430 44.497 1.00 24.00 C ATOM 2670 CG LYS 368 21.123 28.046 43.835 1.00 35.80 C ATOM 2671 CD LYS 368 22.350 28.680 44.494 1.00 43.24 C ATOM 2672 CE LYS 368 22.824 29.963 43.810 1.00 66.80 C ATOM 2673 NZ LYS 368 23.369 29.650 42.470 1.00 80.06 N ATOM 2674 N LYS 369 17.269 27.829 46.389 1.00 22.82 N ATOM 2675 CA LYS 369 16.047 28.430 46.862 1.00 23.85 C ATOM 2676 C LYS 369 15.310 27.494 47.763 1.00 22.67 C ATOM 2677 O LYS 369 15.554 26.292 47.747 1.00 22.42 O ATOM 2678 CB LYS 369 15.086 28.885 45.752 1.00 29.62 C ATOM 2679 CG LYS 369 15.530 30.205 45.119 1.00 60.45 C ATOM 2680 CD LYS 369 14.611 30.700 44.008 1.00 43.19 C ATOM 2681 CE LYS 369 14.979 32.096 43.498 1.00 72.22 C ATOM 2682 NZ LYS 369 14.669 33.117 44.525 1.00 47.18 N ATOM 2683 N GLY 370 14.391 28.002 48.617 1.00 22.92 N ATOM 2684 CA GLY 370 14.043 29.382 48.797 1.00 23.13 C ATOM 2685 C GLY 370 15.223 30.106 49.347 1.00 23.72 C ATOM 2686 O GLY 370 15.495 31.247 48.979 1.00 23.98 O ATOM 2687 N THR 371 15.946 29.457 50.275 1.00 23.99 N ATOM 2688 CA THR 371 17.089 30.088 50.850 1.00 24.28 C ATOM 2689 C THR 371 18.278 29.290 50.439 1.00 23.83 C ATOM 2690 O THR 371 18.170 28.371 49.627 1.00 23.23 O ATOM 2691 CB THR 371 17.049 30.129 52.348 1.00 25.43 C ATOM 2692 OG1 THR 371 17.047 28.814 52.882 1.00 80.69 O ATOM 2693 CG2 THR 371 15.772 30.867 52.776 1.00 79.70 C ATOM 2694 N ASN 372 19.461 29.663 50.960 1.00 24.56 N ATOM 2695 CA ASN 372 20.663 28.954 50.647 1.00 24.47 C ATOM 2696 C ASN 372 20.548 27.577 51.218 1.00 24.12 C ATOM 2697 O ASN 372 21.045 26.614 50.636 1.00 23.90 O ATOM 2698 CB ASN 372 21.928 29.605 51.234 1.00 25.29 C ATOM 2699 CG ASN 372 22.225 30.863 50.429 1.00 35.51 C ATOM 2700 OD1 ASN 372 21.505 31.856 50.507 1.00 70.78 O ATOM 2701 ND2 ASN 372 23.325 30.822 49.629 1.00 67.35 N ATOM 2702 N GLY 373 19.896 27.451 52.389 1.00 24.25 N ATOM 2703 CA GLY 373 19.786 26.169 53.018 1.00 24.04 C ATOM 2704 C GLY 373 18.658 25.394 52.415 1.00 23.55 C ATOM 2705 O GLY 373 17.831 25.919 51.671 1.00 23.38 O ATOM 2706 N TYR 374 18.608 24.095 52.762 1.00 23.43 N ATOM 2707 CA TYR 374 17.606 23.180 52.305 1.00 22.93 C ATOM 2708 C TYR 374 17.130 22.498 53.547 1.00 23.14 C ATOM 2709 O TYR 374 17.771 22.600 54.593 1.00 23.51 O ATOM 2710 CB TYR 374 18.176 22.120 51.334 1.00 23.08 C ATOM 2711 CG TYR 374 17.128 21.121 50.967 1.00 22.68 C ATOM 2712 CD1 TYR 374 16.205 21.393 49.991 1.00 23.30 C ATOM 2713 CD2 TYR 374 17.059 19.906 51.607 1.00 23.82 C ATOM 2714 CE1 TYR 374 15.237 20.477 49.648 1.00 24.37 C ATOM 2715 CE2 TYR 374 16.093 18.983 51.275 1.00 24.84 C ATOM 2716 CZ TYR 374 15.175 19.266 50.293 1.00 24.93 C ATOM 2717 OH TYR 374 14.195 18.316 49.951 1.00 27.02 H ATOM 2718 N PRO 375 16.031 21.808 53.484 1.00 23.02 N ATOM 2719 CA PRO 375 15.559 21.157 54.666 1.00 23.17 C ATOM 2720 C PRO 375 16.525 20.166 55.202 1.00 23.26 C ATOM 2721 O PRO 375 16.338 19.731 56.334 1.00 23.50 O ATOM 2722 CB PRO 375 14.181 20.620 54.315 1.00 23.21 C ATOM 2723 CG PRO 375 13.655 21.681 53.333 1.00 24.34 C ATOM 2724 CD PRO 375 14.916 22.257 52.664 1.00 22.98 C ATOM 2725 N ILE 376 17.544 19.760 54.428 1.00 23.21 N ATOM 2726 CA ILE 376 18.499 18.925 55.079 1.00 23.54 C ATOM 2727 C ILE 376 19.335 19.936 55.785 1.00 23.85 C ATOM 2728 O ILE 376 20.220 20.561 55.203 1.00 24.07 O ATOM 2729 CB ILE 376 19.354 18.154 54.123 1.00 23.66 C ATOM 2730 CG1 ILE 376 18.470 17.272 53.232 1.00 23.24 C ATOM 2731 CG2 ILE 376 20.395 17.363 54.932 1.00 24.43 C ATOM 2732 CD1 ILE 376 17.629 16.265 54.014 1.00 23.54 C ATOM 2733 N PHE 377 19.054 20.090 57.088 1.00 24.30 N ATOM 2734 CA PHE 377 19.569 21.138 57.915 1.00 25.28 C ATOM 2735 C PHE 377 21.042 21.279 57.720 1.00 24.70 C ATOM 2736 O PHE 377 21.793 20.306 57.735 1.00 24.96 O ATOM 2737 CB PHE 377 19.282 20.865 59.404 1.00 27.73 C ATOM 2738 CG PHE 377 19.526 22.082 60.230 1.00 31.90 C ATOM 2739 CD1 PHE 377 18.560 23.056 60.336 1.00 36.58 C ATOM 2740 CD2 PHE 377 20.706 22.240 60.916 1.00 36.43 C ATOM 2741 CE1 PHE 377 18.769 24.178 61.103 1.00 43.15 C ATOM 2742 CE2 PHE 377 20.919 23.360 61.685 1.00 42.22 C ATOM 2743 CZ PHE 377 19.954 24.333 61.782 1.00 44.69 C ATOM 2744 N GLN 378 21.474 22.535 57.494 1.00 25.69 N ATOM 2745 CA GLN 378 22.860 22.867 57.336 1.00 27.11 C ATOM 2746 C GLN 378 22.992 24.298 57.736 1.00 31.29 C ATOM 2747 O GLN 378 22.048 24.904 58.238 1.00 32.80 O ATOM 2748 CB GLN 378 23.396 22.703 55.900 1.00 33.48 C ATOM 2749 CG GLN 378 22.773 23.641 54.864 1.00 65.35 C ATOM 2750 CD GLN 378 23.425 23.331 53.521 1.00 66.91 C ATOM 2751 OE1 GLN 378 22.764 23.324 52.483 1.00 66.15 O ATOM 2752 NE2 GLN 378 24.757 23.066 53.536 1.00 85.92 N ATOM 2753 N TRP 379 24.189 24.874 57.549 1.00 38.36 N ATOM 2754 CA TRP 379 24.385 26.233 57.943 1.00 50.58 C ATOM 2755 C TRP 379 23.561 27.094 57.039 1.00 80.21 C ATOM 2756 O TRP 379 23.544 26.906 55.823 1.00 91.57 O ATOM 2757 CB TRP 379 25.863 26.656 57.848 1.00 65.04 C ATOM 2758 CG TRP 379 26.160 28.071 58.274 1.00 79.85 C ATOM 2759 CD1 TRP 379 26.330 29.193 57.518 1.00 96.26 C ATOM 2760 CD2 TRP 379 26.321 28.474 59.643 1.00 89.75 C ATOM 2761 NE1 TRP 379 26.594 30.271 58.330 1.00 98.99 N ATOM 2762 CE2 TRP 379 26.589 29.842 59.641 1.00 98.10 C ATOM 2763 CE3 TRP 379 26.252 27.761 60.805 1.00 93.18 C ATOM 2764 CZ2 TRP 379 26.793 30.522 60.809 1.00 99.50 C ATOM 2765 CZ3 TRP 379 26.455 28.450 61.980 1.00 98.42 C ATOM 2766 CH2 TRP 379 26.721 29.804 61.981 1.00 99.42 H ATOM 2767 N SER 380 22.825 28.056 57.631 1.00 90.41 N ATOM 2768 CA SER 380 22.005 28.922 56.837 1.00 97.53 C ATOM 2769 C SER 380 21.989 30.253 57.512 1.00 98.74 C ATOM 2770 O SER 380 22.408 30.389 58.660 1.00 98.37 O ATOM 2771 CB SER 380 20.544 28.453 56.714 1.00 98.93 C ATOM 2772 OG SER 380 19.806 29.365 55.916 1.00 99.32 O ATOM 2773 N GLU 381 21.509 31.282 56.791 1.00 99.63 N ATOM 2774 CA GLU 381 21.454 32.598 57.350 1.00 99.86 C ATOM 2775 C GLU 381 20.558 32.522 58.578 1.00 99.94 C ATOM 2776 O GLU 381 20.702 33.404 59.465 1.00 99.97 O ATOM 2777 CB GLU 381 20.856 33.634 56.381 1.00 99.98 C ATOM 2778 CG GLU 381 21.743 33.909 55.164 1.00100.00 C ATOM 2779 CD GLU 381 20.995 34.847 54.227 1.00100.00 C ATOM 2780 OE1 GLU 381 20.130 34.349 53.457 1.00100.00 O ATOM 2781 OE2 GLU 381 21.276 36.075 54.271 1.00100.00 O ATOM 2782 OXT GLU 381 19.726 31.580 58.647 1.00 99.97 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 106.67 23.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 120.24 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.55 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 121.09 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.95 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 95.79 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 71.82 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 96.23 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 74.23 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.49 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 62.73 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 44.00 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 72.85 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 7.19 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.73 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 48.34 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 36.98 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 61.73 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 109.38 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 109.38 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 109.38 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.85 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.85 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2209 CRMSCA SECONDARY STRUCTURE . . 6.08 11 100.0 11 CRMSCA SURFACE . . . . . . . . 6.75 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.35 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.95 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.13 54 100.0 54 CRMSMC SURFACE . . . . . . . . 6.86 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.42 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.94 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.10 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.28 41 100.0 41 CRMSSC SURFACE . . . . . . . . 9.88 120 100.0 120 CRMSSC BURIED . . . . . . . . 10.66 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.52 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.28 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.54 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.44 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 22.658 0.595 0.668 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 17.210 0.605 0.673 11 100.0 11 ERRCA SURFACE . . . . . . . . 23.955 0.608 0.678 26 100.0 26 ERRCA BURIED . . . . . . . . 15.913 0.527 0.619 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 23.315 0.595 0.667 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 17.244 0.602 0.670 54 100.0 54 ERRMC SURFACE . . . . . . . . 24.629 0.607 0.675 129 100.0 129 ERRMC BURIED . . . . . . . . 15.946 0.530 0.621 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 34.031 0.593 0.667 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 33.994 0.587 0.662 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 22.932 0.546 0.629 41 100.0 41 ERRSC SURFACE . . . . . . . . 35.648 0.605 0.676 120 100.0 120 ERRSC BURIED . . . . . . . . 14.623 0.447 0.547 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 28.718 0.596 0.668 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 20.024 0.579 0.653 85 100.0 85 ERRALL SURFACE . . . . . . . . 30.469 0.607 0.677 224 100.0 224 ERRALL BURIED . . . . . . . . 15.642 0.510 0.601 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 7 30 31 31 DISTCA CA (P) 0.00 0.00 0.00 22.58 96.77 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.00 6.66 DISTCA ALL (N) 0 0 1 47 196 254 254 DISTALL ALL (P) 0.00 0.00 0.39 18.50 77.17 254 DISTALL ALL (RMS) 0.00 0.00 2.61 4.22 6.78 DISTALL END of the results output