####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS360_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS360_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 353 - 366 4.99 13.84 LCS_AVERAGE: 42.14 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 371 - 377 1.88 13.71 LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.97 14.18 LCS_AVERAGE: 16.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.99 14.12 LONGEST_CONTINUOUS_SEGMENT: 5 374 - 378 0.93 14.99 LCS_AVERAGE: 12.59 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 7 9 11 13 13 13 13 14 14 16 16 17 19 21 22 LCS_GDT A 352 A 352 3 3 10 0 3 3 3 4 5 7 9 13 13 13 13 14 15 16 16 17 19 21 22 LCS_GDT E 353 E 353 3 3 14 1 3 3 4 5 5 7 8 8 9 11 13 14 15 16 16 17 19 21 22 LCS_GDT E 354 E 354 4 4 14 3 3 4 4 5 5 7 8 8 9 11 13 14 15 16 16 17 19 21 22 LCS_GDT L 355 L 355 4 4 14 3 3 4 4 4 5 6 7 9 9 10 11 13 14 14 15 17 19 21 22 LCS_GDT G 356 G 356 4 5 14 3 4 4 4 4 5 6 8 9 9 10 11 13 14 14 14 15 18 18 20 LCS_GDT N 357 N 357 4 5 14 3 4 4 4 4 5 6 8 9 9 10 11 13 14 14 15 16 18 20 22 LCS_GDT I 358 I 358 4 5 14 3 4 4 4 4 5 6 8 9 9 10 11 13 14 14 15 17 19 21 22 LCS_GDT I 359 I 359 4 5 14 3 4 4 4 4 5 6 8 9 9 10 11 13 14 14 15 17 19 21 22 LCS_GDT V 360 V 360 3 5 14 3 3 3 3 4 5 6 7 8 9 10 11 13 14 14 15 17 19 21 22 LCS_GDT A 361 A 361 3 4 14 3 3 3 3 3 6 7 8 9 9 11 13 14 15 16 16 17 19 21 22 LCS_GDT W 362 W 362 4 5 14 3 3 4 4 5 6 7 8 9 9 11 13 14 15 16 16 17 19 21 22 LCS_GDT N 363 N 363 4 5 14 3 3 4 4 5 6 7 8 9 10 11 13 14 15 16 16 17 19 21 22 LCS_GDT P 364 P 364 4 5 14 3 3 4 4 5 6 6 8 9 10 11 13 14 15 16 16 17 19 21 22 LCS_GDT N 365 N 365 4 5 14 3 3 4 4 5 6 7 8 9 10 11 13 14 15 16 16 17 19 21 22 LCS_GDT L 366 L 366 4 5 14 3 3 4 4 5 6 7 8 9 10 11 13 14 15 16 16 17 19 21 22 LCS_GDT W 367 W 367 4 5 10 1 3 4 4 4 5 6 7 9 10 10 11 14 15 16 16 17 19 21 22 LCS_GDT K 368 K 368 3 5 10 3 3 3 4 4 6 6 7 9 10 10 11 12 12 13 14 16 19 21 22 LCS_GDT K 369 K 369 4 5 13 3 4 4 4 4 5 6 7 9 10 10 11 11 12 13 14 16 17 19 20 LCS_GDT G 370 G 370 4 4 13 3 4 4 4 4 5 5 7 9 10 10 11 13 13 14 14 16 17 19 22 LCS_GDT T 371 T 371 4 7 13 3 4 4 4 6 8 9 11 13 13 13 13 14 14 14 15 17 19 21 22 LCS_GDT N 372 N 372 4 7 13 0 4 4 5 6 7 10 11 13 13 13 13 14 14 14 15 17 19 21 22 LCS_GDT G 373 G 373 5 7 13 3 4 4 6 6 8 10 11 13 13 13 13 14 14 14 15 17 19 21 22 LCS_GDT Y 374 Y 374 5 7 13 3 4 5 6 6 8 10 11 13 13 13 13 14 15 16 16 17 19 21 22 LCS_GDT P 375 P 375 5 7 13 3 4 5 6 6 8 10 11 13 13 13 13 14 15 16 16 17 19 21 22 LCS_GDT I 376 I 376 5 7 13 3 4 5 6 6 8 10 11 13 13 13 13 14 15 16 16 17 18 19 20 LCS_GDT F 377 F 377 5 7 13 3 4 5 6 6 8 10 11 13 13 13 13 14 14 14 15 17 18 19 20 LCS_GDT Q 378 Q 378 5 7 13 3 4 5 6 6 7 10 11 13 13 13 13 14 14 14 15 16 16 18 20 LCS_GDT W 379 W 379 3 7 13 3 3 5 5 6 8 10 11 13 13 13 13 14 14 14 15 17 18 19 20 LCS_GDT S 380 S 380 3 4 13 3 3 3 4 4 6 10 11 13 13 13 13 14 15 16 16 17 18 19 20 LCS_GDT E 381 E 381 3 4 13 3 3 3 4 6 8 10 11 13 13 13 13 14 15 16 16 17 18 19 20 LCS_AVERAGE LCS_A: 23.83 ( 12.59 16.75 42.14 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 6 8 10 11 13 13 13 13 14 15 16 16 17 19 21 22 GDT PERCENT_AT 9.68 12.90 16.13 19.35 19.35 25.81 32.26 35.48 41.94 41.94 41.94 41.94 45.16 48.39 51.61 51.61 54.84 61.29 67.74 70.97 GDT RMS_LOCAL 0.03 0.40 0.93 1.32 1.32 2.13 2.65 2.74 3.07 3.07 3.07 3.07 3.67 5.10 5.31 5.31 5.92 7.28 7.44 7.60 GDT RMS_ALL_AT 22.89 18.31 14.99 15.33 15.33 13.89 14.49 14.24 14.98 14.98 14.98 14.98 14.73 9.89 9.92 9.92 10.09 10.86 10.38 10.62 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 5.990 0 0.642 0.915 5.990 22.619 22.222 LGA A 352 A 352 5.875 0 0.611 0.588 6.431 23.929 22.571 LGA E 353 E 353 7.784 0 0.605 1.181 11.422 6.429 3.598 LGA E 354 E 354 8.774 0 0.618 0.924 10.877 2.500 6.402 LGA L 355 L 355 12.709 0 0.064 0.227 16.047 0.000 0.000 LGA G 356 G 356 18.287 0 0.601 0.601 18.420 0.000 0.000 LGA N 357 N 357 19.759 0 0.033 0.059 22.108 0.000 0.000 LGA I 358 I 358 20.247 0 0.562 0.622 23.025 0.000 0.000 LGA I 359 I 359 20.571 0 0.617 0.900 21.937 0.000 0.000 LGA V 360 V 360 23.444 0 0.611 0.605 25.585 0.000 0.000 LGA A 361 A 361 22.172 0 0.708 0.645 24.058 0.000 0.000 LGA W 362 W 362 23.549 0 0.653 1.153 25.721 0.000 0.000 LGA N 363 N 363 22.020 0 0.195 1.042 23.950 0.000 0.000 LGA P 364 P 364 20.652 0 0.618 0.796 21.248 0.000 0.000 LGA N 365 N 365 21.944 0 0.199 1.041 26.745 0.000 0.000 LGA L 366 L 366 19.816 0 0.575 1.404 20.952 0.000 0.000 LGA W 367 W 367 17.785 0 0.127 0.757 19.106 0.000 0.000 LGA K 368 K 368 17.495 0 0.589 0.976 21.469 0.000 0.000 LGA K 369 K 369 14.199 0 0.046 1.309 18.736 0.000 0.000 LGA G 370 G 370 8.644 0 0.047 0.047 10.966 6.548 6.548 LGA T 371 T 371 2.943 0 0.652 0.607 4.649 45.714 45.918 LGA N 372 N 372 3.475 0 0.736 1.193 8.201 52.500 34.583 LGA G 373 G 373 2.887 0 0.648 0.648 2.887 66.905 66.905 LGA Y 374 Y 374 1.592 0 0.104 1.225 10.337 70.833 38.095 LGA P 375 P 375 1.893 0 0.133 0.322 3.607 61.548 65.238 LGA I 376 I 376 2.885 0 0.150 1.044 7.040 67.024 46.786 LGA F 377 F 377 2.574 0 0.177 1.103 9.898 52.262 27.316 LGA Q 378 Q 378 3.507 0 0.661 0.959 11.536 59.524 29.259 LGA W 379 W 379 1.714 0 0.677 1.366 11.405 66.905 29.456 LGA S 380 S 380 3.819 0 0.054 0.731 7.981 53.810 40.635 LGA E 381 E 381 1.531 0 0.162 0.635 4.487 54.286 50.810 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 9.490 9.365 10.432 23.011 17.301 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.74 29.839 27.575 0.388 LGA_LOCAL RMSD: 2.736 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.244 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.490 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.212593 * X + -0.976994 * Y + 0.016971 * Z + -13.640281 Y_new = 0.840072 * X + -0.191614 * Y + -0.507506 * Z + 23.580688 Z_new = 0.499082 * X + -0.093636 * Y + 0.861481 * Z + 32.661148 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.818658 -0.522539 -0.108267 [DEG: 104.2014 -29.9393 -6.2032 ] ZXZ: 0.033427 0.532618 1.756256 [DEG: 1.9152 30.5167 100.6261 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS360_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS360_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.74 27.575 9.49 REMARK ---------------------------------------------------------- MOLECULE T0537TS360_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1hg8_A 1rmg_A ATOM 2529 N SER 351 7.585 13.036 55.145 1.00 93.42 N ATOM 2530 CA SER 351 6.848 12.325 56.144 1.00 93.42 C ATOM 2531 CB SER 351 6.154 13.261 57.151 1.00 93.42 C ATOM 2532 OG SER 351 7.118 13.997 57.892 1.00 93.42 O ATOM 2533 C SER 351 5.785 11.508 55.480 1.00 93.42 C ATOM 2534 O SER 351 5.380 10.479 56.010 1.00 93.42 O ATOM 2535 N ALA 352 5.293 11.933 54.300 1.00 56.15 N ATOM 2536 CA ALA 352 4.231 11.178 53.698 1.00 56.15 C ATOM 2537 CB ALA 352 3.009 12.043 53.339 1.00 56.15 C ATOM 2538 C ALA 352 4.718 10.539 52.434 1.00 56.15 C ATOM 2539 O ALA 352 5.275 11.198 51.557 1.00 56.15 O ATOM 2540 N GLU 353 4.498 9.217 52.296 1.00 91.73 N ATOM 2541 CA GLU 353 4.941 8.564 51.102 1.00 91.73 C ATOM 2542 CB GLU 353 5.851 7.351 51.357 1.00 91.73 C ATOM 2543 CG GLU 353 7.214 7.729 51.942 1.00 91.73 C ATOM 2544 CD GLU 353 8.044 8.391 50.849 1.00 91.73 C ATOM 2545 OE1 GLU 353 7.776 9.589 50.557 1.00 91.73 O ATOM 2546 OE2 GLU 353 8.947 7.717 50.289 1.00 91.73 O ATOM 2547 C GLU 353 3.736 8.072 50.382 1.00 91.73 C ATOM 2548 O GLU 353 2.916 7.336 50.928 1.00 91.73 O ATOM 2549 N GLU 354 3.591 8.490 49.116 1.00114.75 N ATOM 2550 CA GLU 354 2.463 8.030 48.379 1.00114.75 C ATOM 2551 CB GLU 354 1.459 9.152 48.078 1.00114.75 C ATOM 2552 CG GLU 354 2.060 10.341 47.330 1.00114.75 C ATOM 2553 CD GLU 354 1.132 11.526 47.562 1.00114.75 C ATOM 2554 OE1 GLU 354 0.361 11.478 48.558 1.00114.75 O ATOM 2555 OE2 GLU 354 1.189 12.494 46.758 1.00114.75 O ATOM 2556 C GLU 354 2.978 7.449 47.109 1.00114.75 C ATOM 2557 O GLU 354 3.615 8.127 46.302 1.00114.75 O ATOM 2558 N LEU 355 2.736 6.141 46.932 1.00 66.41 N ATOM 2559 CA LEU 355 3.134 5.447 45.750 1.00 66.41 C ATOM 2560 CB LEU 355 2.996 3.915 45.849 1.00 66.41 C ATOM 2561 CG LEU 355 3.997 3.275 46.835 1.00 66.41 C ATOM 2562 CD1 LEU 355 4.014 1.740 46.716 1.00 66.41 C ATOM 2563 CD2 LEU 355 5.399 3.887 46.680 1.00 66.41 C ATOM 2564 C LEU 355 2.298 5.951 44.621 1.00 66.41 C ATOM 2565 O LEU 355 2.738 5.976 43.475 1.00 66.41 O ATOM 2566 N GLY 356 1.050 6.355 44.927 1.00 37.63 N ATOM 2567 CA GLY 356 0.131 6.795 43.916 1.00 37.63 C ATOM 2568 C GLY 356 0.597 8.092 43.335 1.00 37.63 C ATOM 2569 O GLY 356 1.274 8.883 43.991 1.00 37.63 O ATOM 2570 N ASN 357 0.249 8.322 42.051 1.00 77.02 N ATOM 2571 CA ASN 357 0.594 9.534 41.370 1.00 77.02 C ATOM 2572 CB ASN 357 0.330 9.479 39.854 1.00 77.02 C ATOM 2573 CG ASN 357 1.341 8.558 39.180 1.00 77.02 C ATOM 2574 OD1 ASN 357 2.365 8.187 39.751 1.00 77.02 O ATOM 2575 ND2 ASN 357 1.046 8.185 37.905 1.00 77.02 N ATOM 2576 C ASN 357 -0.215 10.682 41.886 1.00 77.02 C ATOM 2577 O ASN 357 0.331 11.737 42.206 1.00 77.02 O ATOM 2578 N ILE 358 -1.549 10.513 41.991 1.00190.94 N ATOM 2579 CA ILE 358 -2.314 11.665 42.361 1.00190.94 C ATOM 2580 CB ILE 358 -3.432 11.948 41.398 1.00190.94 C ATOM 2581 CG2 ILE 358 -4.265 13.118 41.950 1.00190.94 C ATOM 2582 CG1 ILE 358 -2.868 12.207 39.992 1.00190.94 C ATOM 2583 CD1 ILE 358 -3.944 12.226 38.907 1.00190.94 C ATOM 2584 C ILE 358 -2.925 11.472 43.705 1.00190.94 C ATOM 2585 O ILE 358 -4.046 10.983 43.830 1.00190.94 O ATOM 2586 N ILE 359 -2.206 11.902 44.753 1.00114.76 N ATOM 2587 CA ILE 359 -2.758 11.852 46.066 1.00114.76 C ATOM 2588 CB ILE 359 -1.916 11.126 47.069 1.00114.76 C ATOM 2589 CG2 ILE 359 -2.535 11.382 48.453 1.00114.76 C ATOM 2590 CG1 ILE 359 -1.803 9.639 46.703 1.00114.76 C ATOM 2591 CD1 ILE 359 -1.017 9.391 45.421 1.00114.76 C ATOM 2592 C ILE 359 -2.812 13.274 46.489 1.00114.76 C ATOM 2593 O ILE 359 -1.868 14.031 46.265 1.00114.76 O ATOM 2594 N VAL 360 -3.941 13.689 47.087 1.00 48.62 N ATOM 2595 CA VAL 360 -4.042 15.059 47.473 1.00 48.62 C ATOM 2596 CB VAL 360 -5.430 15.602 47.325 1.00 48.62 C ATOM 2597 CG1 VAL 360 -5.476 17.017 47.927 1.00 48.62 C ATOM 2598 CG2 VAL 360 -5.798 15.544 45.832 1.00 48.62 C ATOM 2599 C VAL 360 -3.652 15.161 48.907 1.00 48.62 C ATOM 2600 O VAL 360 -4.275 14.577 49.794 1.00 48.62 O ATOM 2601 N ALA 361 -2.569 15.910 49.166 1.00 43.44 N ATOM 2602 CA ALA 361 -2.142 16.080 50.515 1.00 43.44 C ATOM 2603 CB ALA 361 -1.054 15.078 50.938 1.00 43.44 C ATOM 2604 C ALA 361 -1.564 17.447 50.613 1.00 43.44 C ATOM 2605 O ALA 361 -1.032 17.978 49.638 1.00 43.44 O ATOM 2606 N TRP 362 -1.691 18.074 51.794 1.00159.66 N ATOM 2607 CA TRP 362 -1.067 19.347 51.962 1.00159.66 C ATOM 2608 CB TRP 362 -1.944 20.434 52.614 1.00159.66 C ATOM 2609 CG TRP 362 -3.041 20.978 51.733 1.00159.66 C ATOM 2610 CD2 TRP 362 -2.772 21.760 50.561 1.00159.66 C ATOM 2611 CD1 TRP 362 -4.396 20.844 51.807 1.00159.66 C ATOM 2612 NE1 TRP 362 -4.990 21.497 50.751 1.00159.66 N ATOM 2613 CE2 TRP 362 -3.997 22.062 49.975 1.00159.66 C ATOM 2614 CE3 TRP 362 -1.592 22.183 50.018 1.00159.66 C ATOM 2615 CZ2 TRP 362 -4.063 22.798 48.826 1.00159.66 C ATOM 2616 CZ3 TRP 362 -1.659 22.928 48.863 1.00159.66 C ATOM 2617 CH2 TRP 362 -2.871 23.229 48.278 1.00159.66 C ATOM 2618 C TRP 362 0.059 19.104 52.896 1.00159.66 C ATOM 2619 O TRP 362 -0.125 18.528 53.967 1.00159.66 O ATOM 2620 N ASN 363 1.268 19.535 52.508 1.00 61.23 N ATOM 2621 CA ASN 363 2.373 19.316 53.383 1.00 61.23 C ATOM 2622 CB ASN 363 3.681 19.048 52.616 1.00 61.23 C ATOM 2623 CG ASN 363 3.485 17.811 51.749 1.00 61.23 C ATOM 2624 OD1 ASN 363 3.047 16.764 52.225 1.00 61.23 O ATOM 2625 ND2 ASN 363 3.810 17.938 50.433 1.00 61.23 N ATOM 2626 C ASN 363 2.549 20.600 54.108 1.00 61.23 C ATOM 2627 O ASN 363 2.634 21.642 53.458 1.00 61.23 O ATOM 2628 N PRO 364 2.525 20.595 55.421 1.00 96.67 N ATOM 2629 CA PRO 364 2.773 21.803 56.146 1.00 96.67 C ATOM 2630 CD PRO 364 2.799 19.420 56.225 1.00 96.67 C ATOM 2631 CB PRO 364 2.816 21.406 57.617 1.00 96.67 C ATOM 2632 CG PRO 364 3.346 19.962 57.559 1.00 96.67 C ATOM 2633 C PRO 364 4.108 22.259 55.664 1.00 96.67 C ATOM 2634 O PRO 364 5.116 21.660 56.038 1.00 96.67 O ATOM 2635 N ASN 365 4.137 23.303 54.818 1.00131.57 N ATOM 2636 CA ASN 365 5.397 23.754 54.322 1.00131.57 C ATOM 2637 CB ASN 365 5.271 24.766 53.173 1.00131.57 C ATOM 2638 CG ASN 365 4.900 23.997 51.912 1.00131.57 C ATOM 2639 OD1 ASN 365 3.825 24.174 51.343 1.00131.57 O ATOM 2640 ND2 ASN 365 5.826 23.112 51.453 1.00131.57 N ATOM 2641 C ASN 365 6.131 24.420 55.431 1.00131.57 C ATOM 2642 O ASN 365 7.290 24.110 55.696 1.00131.57 O ATOM 2643 N LEU 366 5.445 25.338 56.138 1.00242.99 N ATOM 2644 CA LEU 366 6.132 26.090 57.145 1.00242.99 C ATOM 2645 CB LEU 366 6.361 27.564 56.767 1.00242.99 C ATOM 2646 CG LEU 366 7.238 27.787 55.523 1.00242.99 C ATOM 2647 CD1 LEU 366 7.456 29.288 55.262 1.00242.99 C ATOM 2648 CD2 LEU 366 8.554 27.001 55.624 1.00242.99 C ATOM 2649 C LEU 366 5.295 26.168 58.372 1.00242.99 C ATOM 2650 O LEU 366 4.075 26.022 58.325 1.00242.99 O ATOM 2651 N TRP 367 5.964 26.374 59.523 1.00223.46 N ATOM 2652 CA TRP 367 5.233 26.695 60.707 1.00223.46 C ATOM 2653 CB TRP 367 6.064 26.623 62.002 1.00223.46 C ATOM 2654 CG TRP 367 6.586 25.249 62.340 1.00223.46 C ATOM 2655 CD2 TRP 367 7.374 24.952 63.504 1.00223.46 C ATOM 2656 CD1 TRP 367 6.455 24.078 61.653 1.00223.46 C ATOM 2657 NE1 TRP 367 7.122 23.071 62.311 1.00223.46 N ATOM 2658 CE2 TRP 367 7.692 23.597 63.453 1.00223.46 C ATOM 2659 CE3 TRP 367 7.801 25.748 64.527 1.00223.46 C ATOM 2660 CZ2 TRP 367 8.443 23.011 64.432 1.00223.46 C ATOM 2661 CZ3 TRP 367 8.557 25.157 65.514 1.00223.46 C ATOM 2662 CH2 TRP 367 8.872 23.814 65.465 1.00223.46 C ATOM 2663 C TRP 367 4.945 28.137 60.470 1.00223.46 C ATOM 2664 O TRP 367 5.750 28.811 59.829 1.00223.46 O ATOM 2665 N LYS 368 3.794 28.662 60.931 1.00 79.93 N ATOM 2666 CA LYS 368 3.554 30.042 60.629 1.00 79.93 C ATOM 2667 CB LYS 368 2.180 30.567 61.081 1.00 79.93 C ATOM 2668 CG LYS 368 1.059 30.221 60.095 1.00 79.93 C ATOM 2669 CD LYS 368 -0.322 30.707 60.535 1.00 79.93 C ATOM 2670 CE LYS 368 -1.217 29.605 61.099 1.00 79.93 C ATOM 2671 NZ LYS 368 -2.470 30.194 61.624 1.00 79.93 N ATOM 2672 C LYS 368 4.630 30.855 61.266 1.00 79.93 C ATOM 2673 O LYS 368 5.168 31.775 60.653 1.00 79.93 O ATOM 2674 N LYS 369 5.001 30.520 62.511 1.00252.29 N ATOM 2675 CA LYS 369 6.059 31.259 63.126 1.00252.29 C ATOM 2676 CB LYS 369 5.741 31.623 64.588 1.00252.29 C ATOM 2677 CG LYS 369 6.668 32.654 65.237 1.00252.29 C ATOM 2678 CD LYS 369 8.095 32.169 65.489 1.00252.29 C ATOM 2679 CE LYS 369 8.893 33.116 66.389 1.00252.29 C ATOM 2680 NZ LYS 369 10.142 32.462 66.842 1.00252.29 N ATOM 2681 C LYS 369 7.263 30.378 63.067 1.00252.29 C ATOM 2682 O LYS 369 7.201 29.203 63.425 1.00252.29 O ATOM 2683 N GLY 370 8.397 30.922 62.589 1.00103.66 N ATOM 2684 CA GLY 370 9.578 30.123 62.442 1.00103.66 C ATOM 2685 C GLY 370 9.572 29.617 61.035 1.00103.66 C ATOM 2686 O GLY 370 8.550 29.671 60.354 1.00103.66 O ATOM 2687 N THR 371 10.723 29.100 60.558 1.00284.91 N ATOM 2688 CA THR 371 10.753 28.649 59.198 1.00284.91 C ATOM 2689 CB THR 371 11.636 29.477 58.313 1.00284.91 C ATOM 2690 OG1 THR 371 12.980 29.410 58.765 1.00284.91 O ATOM 2691 CG2 THR 371 11.136 30.931 58.345 1.00284.91 C ATOM 2692 C THR 371 11.265 27.245 59.139 1.00284.91 C ATOM 2693 O THR 371 12.017 26.796 60.003 1.00284.91 O ATOM 2694 N ASN 372 10.825 26.515 58.095 1.00211.17 N ATOM 2695 CA ASN 372 11.216 25.160 57.838 1.00211.17 C ATOM 2696 CB ASN 372 10.285 24.107 58.465 1.00211.17 C ATOM 2697 CG ASN 372 10.568 24.049 59.962 1.00211.17 C ATOM 2698 OD1 ASN 372 9.687 24.288 60.787 1.00211.17 O ATOM 2699 ND2 ASN 372 11.837 23.717 60.321 1.00211.17 N ATOM 2700 C ASN 372 11.155 24.998 56.354 1.00211.17 C ATOM 2701 O ASN 372 11.097 25.982 55.620 1.00211.17 O ATOM 2702 N GLY 373 11.206 23.752 55.851 1.00 92.65 N ATOM 2703 CA GLY 373 11.122 23.621 54.428 1.00 92.65 C ATOM 2704 C GLY 373 11.603 22.264 54.056 1.00 92.65 C ATOM 2705 O GLY 373 11.662 21.366 54.896 1.00 92.65 O ATOM 2706 N TYR 374 11.955 22.101 52.762 1.00262.59 N ATOM 2707 CA TYR 374 12.451 20.862 52.246 1.00262.59 C ATOM 2708 CB TYR 374 12.970 20.988 50.799 1.00262.59 C ATOM 2709 CG TYR 374 13.460 19.656 50.351 1.00262.59 C ATOM 2710 CD1 TYR 374 12.569 18.670 49.995 1.00262.59 C ATOM 2711 CD2 TYR 374 14.809 19.401 50.273 1.00262.59 C ATOM 2712 CE1 TYR 374 13.016 17.440 49.577 1.00262.59 C ATOM 2713 CE2 TYR 374 15.262 18.173 49.855 1.00262.59 C ATOM 2714 CZ TYR 374 14.365 17.192 49.508 1.00262.59 C ATOM 2715 OH TYR 374 14.826 15.930 49.079 1.00262.59 O ATOM 2716 C TYR 374 13.577 20.495 53.146 1.00262.59 C ATOM 2717 O TYR 374 14.395 21.334 53.518 1.00262.59 O ATOM 2718 N PRO 375 13.603 19.258 53.546 1.00108.25 N ATOM 2719 CA PRO 375 14.574 18.817 54.497 1.00108.25 C ATOM 2720 CD PRO 375 12.438 18.396 53.512 1.00108.25 C ATOM 2721 CB PRO 375 14.149 17.407 54.918 1.00108.25 C ATOM 2722 CG PRO 375 13.003 17.038 53.952 1.00108.25 C ATOM 2723 C PRO 375 15.975 18.930 54.018 1.00108.25 C ATOM 2724 O PRO 375 16.349 18.245 53.068 1.00108.25 O ATOM 2725 N ILE 376 16.766 19.785 54.689 1.00 58.14 N ATOM 2726 CA ILE 376 18.152 19.937 54.385 1.00 58.14 C ATOM 2727 CB ILE 376 18.434 21.052 53.422 1.00 58.14 C ATOM 2728 CG2 ILE 376 19.955 21.270 53.368 1.00 58.14 C ATOM 2729 CG1 ILE 376 17.794 20.747 52.059 1.00 58.14 C ATOM 2730 CD1 ILE 376 17.799 21.937 51.100 1.00 58.14 C ATOM 2731 C ILE 376 18.801 20.294 55.675 1.00 58.14 C ATOM 2732 O ILE 376 18.205 20.989 56.496 1.00 58.14 O ATOM 2733 N PHE 377 20.032 19.810 55.916 1.00218.25 N ATOM 2734 CA PHE 377 20.655 20.233 57.132 1.00218.25 C ATOM 2735 CB PHE 377 21.516 19.150 57.809 1.00218.25 C ATOM 2736 CG PHE 377 21.808 19.601 59.204 1.00218.25 C ATOM 2737 CD1 PHE 377 20.861 19.436 60.188 1.00218.25 C ATOM 2738 CD2 PHE 377 23.015 20.174 59.539 1.00218.25 C ATOM 2739 CE1 PHE 377 21.101 19.838 61.481 1.00218.25 C ATOM 2740 CE2 PHE 377 23.263 20.578 60.832 1.00218.25 C ATOM 2741 CZ PHE 377 22.307 20.413 61.805 1.00218.25 C ATOM 2742 C PHE 377 21.556 21.344 56.716 1.00218.25 C ATOM 2743 O PHE 377 22.576 21.122 56.064 1.00218.25 O ATOM 2744 N GLN 378 21.180 22.585 57.072 1.00311.74 N ATOM 2745 CA GLN 378 21.959 23.715 56.668 1.00311.74 C ATOM 2746 CB GLN 378 21.381 24.438 55.440 1.00311.74 C ATOM 2747 CG GLN 378 22.292 25.528 54.872 1.00311.74 C ATOM 2748 CD GLN 378 23.115 24.911 53.748 1.00311.74 C ATOM 2749 OE1 GLN 378 22.716 24.973 52.585 1.00311.74 O ATOM 2750 NE2 GLN 378 24.283 24.305 54.092 1.00311.74 N ATOM 2751 C GLN 378 21.909 24.695 57.788 1.00311.74 C ATOM 2752 O GLN 378 21.098 24.568 58.704 1.00311.74 O ATOM 2753 N TRP 379 22.808 25.695 57.759 1.00300.90 N ATOM 2754 CA TRP 379 22.744 26.685 58.788 1.00300.90 C ATOM 2755 CB TRP 379 24.095 27.341 59.122 1.00300.90 C ATOM 2756 CG TRP 379 24.023 28.249 60.326 1.00300.90 C ATOM 2757 CD2 TRP 379 23.985 27.757 61.676 1.00300.90 C ATOM 2758 CD1 TRP 379 23.941 29.609 60.409 1.00300.90 C ATOM 2759 NE1 TRP 379 23.851 29.993 61.727 1.00300.90 N ATOM 2760 CE2 TRP 379 23.874 28.862 62.517 1.00300.90 C ATOM 2761 CE3 TRP 379 24.028 26.484 62.168 1.00300.90 C ATOM 2762 CZ2 TRP 379 23.808 28.711 63.874 1.00300.90 C ATOM 2763 CZ3 TRP 379 23.967 26.335 63.535 1.00300.90 C ATOM 2764 CH2 TRP 379 23.858 27.427 64.370 1.00300.90 C ATOM 2765 C TRP 379 21.822 27.740 58.276 1.00300.90 C ATOM 2766 O TRP 379 21.814 28.040 57.084 1.00300.90 O ATOM 2767 N SER 380 21.003 28.325 59.168 1.00112.73 N ATOM 2768 CA SER 380 20.071 29.318 58.721 1.00112.73 C ATOM 2769 CB SER 380 19.059 29.748 59.797 1.00112.73 C ATOM 2770 OG SER 380 19.735 30.383 60.872 1.00112.73 O ATOM 2771 C SER 380 20.843 30.527 58.322 1.00112.73 C ATOM 2772 O SER 380 21.912 30.803 58.865 1.00112.73 O ATOM 2773 N GLU 381 20.310 31.276 57.336 1.00 80.35 N ATOM 2774 CA GLU 381 20.959 32.464 56.873 1.00 80.35 C ATOM 2775 CB GLU 381 20.391 32.984 55.539 1.00 80.35 C ATOM 2776 CG GLU 381 18.894 33.302 55.586 1.00 80.35 C ATOM 2777 CD GLU 381 18.478 33.795 54.207 1.00 80.35 C ATOM 2778 OE1 GLU 381 19.283 34.534 53.579 1.00 80.35 O ATOM 2779 OE2 GLU 381 17.351 33.445 53.766 1.00 80.35 O ATOM 2780 C GLU 381 20.740 33.534 57.931 1.00 80.35 C ATOM 2781 O GLU 381 20.029 33.245 58.929 1.00 80.35 O ATOM 2782 OXT GLU 381 21.287 34.655 57.757 1.00 80.35 O TER 2783 GLU 381 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 97.13 35.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 110.98 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 94.71 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 108.44 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.37 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 96.23 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 58.92 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 100.08 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 19.84 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.56 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 69.75 31.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 72.80 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.22 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 80.88 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.93 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 63.90 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 64.83 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 62.93 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 11.17 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 11.17 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 11.17 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.49 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.49 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3061 CRMSCA SECONDARY STRUCTURE . . 9.10 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.08 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.41 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.53 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.10 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.23 129 100.0 129 CRMSMC BURIED . . . . . . . . 11.08 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.52 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.44 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.44 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.58 120 100.0 120 CRMSSC BURIED . . . . . . . . 10.80 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.53 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.75 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.45 224 100.0 224 CRMSALL BURIED . . . . . . . . 11.07 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 130.800 0.844 0.859 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 82.426 0.786 0.812 11 100.0 11 ERRCA SURFACE . . . . . . . . 142.168 0.867 0.877 26 100.0 26 ERRCA BURIED . . . . . . . . 71.687 0.723 0.764 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 131.985 0.846 0.860 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 83.409 0.791 0.816 54 100.0 54 ERRMC SURFACE . . . . . . . . 142.499 0.865 0.876 129 100.0 129 ERRMC BURIED . . . . . . . . 73.017 0.735 0.772 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 158.062 0.852 0.865 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 161.698 0.860 0.871 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 103.980 0.817 0.836 41 100.0 41 ERRSC SURFACE . . . . . . . . 164.330 0.858 0.870 120 100.0 120 ERRSC BURIED . . . . . . . . 82.845 0.775 0.804 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 144.815 0.849 0.863 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 92.835 0.802 0.824 85 100.0 85 ERRALL SURFACE . . . . . . . . 154.096 0.863 0.874 224 100.0 224 ERRALL BURIED . . . . . . . . 75.518 0.745 0.780 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 18 31 31 DISTCA CA (P) 0.00 0.00 3.23 22.58 58.06 31 DISTCA CA (RMS) 0.00 0.00 2.50 4.36 6.50 DISTCA ALL (N) 1 2 5 31 132 254 254 DISTALL ALL (P) 0.39 0.79 1.97 12.20 51.97 254 DISTALL ALL (RMS) 0.93 1.39 2.10 3.98 6.87 DISTALL END of the results output