####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 212), selected 31 , name T0537TS350_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS350_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 351 - 368 4.86 18.25 LCS_AVERAGE: 52.03 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 351 - 363 1.61 22.16 LONGEST_CONTINUOUS_SEGMENT: 13 352 - 364 2.00 21.28 LCS_AVERAGE: 27.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 351 - 358 0.99 22.91 LONGEST_CONTINUOUS_SEGMENT: 8 356 - 363 0.91 21.84 LCS_AVERAGE: 18.11 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 8 13 18 4 5 8 9 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT A 352 A 352 8 13 18 4 6 8 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT E 353 E 353 8 13 18 4 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT E 354 E 354 8 13 18 4 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT L 355 L 355 8 13 18 3 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT G 356 G 356 8 13 18 4 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT N 357 N 357 8 13 18 4 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT I 358 I 358 8 13 18 4 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT I 359 I 359 8 13 18 5 6 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT V 360 V 360 8 13 18 5 6 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT A 361 A 361 8 13 18 5 6 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT W 362 W 362 8 13 18 5 6 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT N 363 N 363 8 13 18 5 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT P 364 P 364 5 13 18 4 4 5 7 9 11 14 14 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT N 365 N 365 5 6 18 4 4 5 5 9 11 12 12 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT L 366 L 366 5 6 18 4 4 5 7 9 10 12 13 15 16 16 16 16 16 16 17 17 17 17 18 LCS_GDT W 367 W 367 5 6 18 3 4 5 5 6 7 8 11 11 11 12 12 13 15 16 17 17 17 17 18 LCS_GDT K 368 K 368 3 6 18 1 3 4 5 6 7 8 11 11 11 12 12 13 14 14 15 15 17 17 18 LCS_GDT K 369 K 369 3 3 14 1 3 3 4 5 5 7 11 11 11 12 12 13 14 14 14 14 15 16 17 LCS_GDT G 370 G 370 4 4 14 4 4 4 4 5 7 8 11 11 11 12 12 13 14 14 14 14 15 16 17 LCS_GDT T 371 T 371 4 4 14 4 4 4 4 5 5 8 11 11 11 12 12 13 14 14 14 14 15 16 17 LCS_GDT N 372 N 372 4 4 14 4 4 4 4 5 5 7 11 11 11 12 12 13 14 14 14 14 15 16 16 LCS_GDT G 373 G 373 4 4 14 4 4 4 4 5 6 7 11 11 11 12 12 13 14 14 14 14 15 16 17 LCS_GDT Y 374 Y 374 3 4 14 3 3 3 4 5 6 6 7 8 11 12 12 12 14 14 14 14 15 16 17 LCS_GDT P 375 P 375 3 4 14 0 3 3 4 5 6 6 7 8 9 11 12 12 12 13 13 13 15 16 17 LCS_GDT I 376 I 376 3 3 13 1 3 3 4 5 6 6 7 8 10 11 12 12 12 13 13 14 15 16 17 LCS_GDT F 377 F 377 4 5 13 3 4 4 5 5 5 6 7 8 10 11 12 12 12 13 13 13 13 14 17 LCS_GDT Q 378 Q 378 4 5 13 3 4 4 5 5 6 6 7 8 10 11 12 12 12 13 13 13 13 13 17 LCS_GDT W 379 W 379 4 5 13 3 4 4 5 5 6 6 7 8 10 11 12 12 12 13 13 13 13 14 17 LCS_GDT S 380 S 380 4 5 13 3 4 4 5 5 6 6 7 8 10 11 12 12 12 13 13 13 13 14 17 LCS_GDT E 381 E 381 3 5 13 0 3 3 5 5 5 6 7 8 10 11 12 12 12 13 13 13 13 16 17 LCS_AVERAGE LCS_A: 32.43 ( 18.11 27.16 52.03 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 11 12 13 14 14 15 16 16 16 16 16 16 17 17 17 17 18 GDT PERCENT_AT 16.13 22.58 29.03 35.48 38.71 41.94 45.16 45.16 48.39 51.61 51.61 51.61 51.61 51.61 51.61 54.84 54.84 54.84 54.84 58.06 GDT RMS_LOCAL 0.20 0.83 1.05 1.27 1.41 1.61 2.10 2.10 2.48 2.76 2.76 2.76 2.76 2.76 2.76 3.67 3.67 3.67 3.67 4.86 GDT RMS_ALL_AT 22.33 21.95 22.08 21.70 22.12 22.16 21.37 21.37 20.51 20.11 20.11 20.11 20.11 20.11 20.11 19.27 19.27 19.27 19.27 18.25 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.803 1 0.595 0.589 4.818 52.619 45.873 LGA A 352 A 352 2.739 0 0.023 0.026 3.450 60.952 58.762 LGA E 353 E 353 2.344 4 0.019 0.021 2.752 68.810 36.931 LGA E 354 E 354 1.460 4 0.027 0.030 1.674 81.429 44.286 LGA L 355 L 355 0.972 3 0.030 0.054 1.272 88.214 54.286 LGA G 356 G 356 1.154 0 0.024 0.024 1.179 83.690 83.690 LGA N 357 N 357 0.865 3 0.027 0.051 1.024 88.214 55.417 LGA I 358 I 358 0.795 3 0.028 0.041 1.147 90.476 55.417 LGA I 359 I 359 1.346 3 0.027 0.038 1.902 81.429 49.821 LGA V 360 V 360 1.377 2 0.023 0.030 2.071 85.952 58.367 LGA A 361 A 361 1.198 0 0.139 0.143 2.224 81.548 78.190 LGA W 362 W 362 2.141 9 0.034 0.049 2.593 67.024 23.231 LGA N 363 N 363 1.997 3 0.575 0.544 4.235 65.476 37.381 LGA P 364 P 364 4.638 2 0.155 0.165 7.743 31.190 21.565 LGA N 365 N 365 6.997 3 0.153 0.158 8.441 13.214 8.274 LGA L 366 L 366 6.233 3 0.025 0.028 10.710 11.190 8.869 LGA W 367 W 367 12.246 9 0.587 0.583 14.206 0.119 0.034 LGA K 368 K 368 17.401 4 0.597 0.591 20.726 0.000 0.000 LGA K 369 K 369 21.311 4 0.613 0.598 23.817 0.000 0.000 LGA G 370 G 370 25.292 0 0.605 0.605 29.312 0.000 0.000 LGA T 371 T 371 31.461 2 0.079 0.079 35.267 0.000 0.000 LGA N 372 N 372 34.284 3 0.301 0.302 36.666 0.000 0.000 LGA G 373 G 373 33.871 0 0.133 0.133 34.796 0.000 0.000 LGA Y 374 Y 374 34.447 7 0.604 0.585 34.975 0.000 0.000 LGA P 375 P 375 32.000 2 0.590 0.589 33.928 0.000 0.000 LGA I 376 I 376 31.073 3 0.564 0.574 31.530 0.000 0.000 LGA F 377 F 377 30.226 6 0.601 0.594 33.404 0.000 0.000 LGA Q 378 Q 378 31.240 4 0.077 0.080 33.902 0.000 0.000 LGA W 379 W 379 31.286 9 0.243 0.252 34.777 0.000 0.000 LGA S 380 S 380 36.766 1 0.601 0.591 40.042 0.000 0.000 LGA E 381 E 381 41.930 5 0.521 0.527 45.008 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 152 59.84 31 SUMMARY(RMSD_GDC): 12.164 12.148 12.217 33.921 23.239 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 2.10 39.516 38.227 0.636 LGA_LOCAL RMSD: 2.102 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.375 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 12.164 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.660412 * X + 0.733551 * Y + -0.160494 * Z + -141.360367 Y_new = -0.225416 * X + 0.397546 * Y + 0.889463 * Z + 61.077675 Z_new = 0.716270 * X + -0.551235 * Y + 0.427898 * Z + 69.369064 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.328926 -0.798443 -0.910703 [DEG: -18.8461 -45.7474 -52.1795 ] ZXZ: -2.963075 1.128630 2.226718 [DEG: -169.7717 64.6657 127.5815 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS350_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS350_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 2.10 38.227 12.16 REMARK ---------------------------------------------------------- MOLECULE T0537TS350_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2390 N SER 351 1.299 13.865 52.134 1.00 0.00 N ATOM 2391 CA SER 351 2.247 12.762 52.026 1.00 0.00 C ATOM 2392 C SER 351 3.633 13.263 51.639 1.00 0.00 C ATOM 2393 O SER 351 4.637 12.846 52.215 1.00 0.00 O ATOM 2394 CB SER 351 1.752 11.745 51.018 1.00 0.00 C ATOM 2395 CEN SER 351 1.511 11.547 50.572 1.00 0.00 C ATOM 2396 H SER 351 0.383 13.768 51.720 1.00 0.00 H ATOM 2397 N ALA 352 3.680 14.158 50.658 1.00 0.00 N ATOM 2398 CA ALA 352 4.943 14.717 50.191 1.00 0.00 C ATOM 2399 C ALA 352 5.836 15.112 51.360 1.00 0.00 C ATOM 2400 O ALA 352 7.032 14.824 51.364 1.00 0.00 O ATOM 2401 CB ALA 352 4.689 15.913 49.285 1.00 0.00 C ATOM 2402 CEN ALA 352 4.691 15.913 49.286 1.00 0.00 C ATOM 2403 H ALA 352 2.818 14.459 50.225 1.00 0.00 H ATOM 2404 N GLU 353 5.247 15.773 52.351 1.00 0.00 N ATOM 2405 CA GLU 353 5.989 16.209 53.528 1.00 0.00 C ATOM 2406 C GLU 353 6.897 15.102 54.048 1.00 0.00 C ATOM 2407 O GLU 353 8.060 15.341 54.372 1.00 0.00 O ATOM 2408 CB GLU 353 5.028 16.662 54.629 1.00 0.00 C ATOM 2409 CEN GLU 353 4.226 17.910 55.468 1.00 0.00 C ATOM 2410 H GLU 353 4.260 15.979 52.287 1.00 0.00 H ATOM 2411 N GLU 354 6.359 13.890 54.126 1.00 0.00 N ATOM 2412 CA GLU 354 7.120 12.743 54.607 1.00 0.00 C ATOM 2413 C GLU 354 8.510 12.705 53.986 1.00 0.00 C ATOM 2414 O GLU 354 9.502 12.478 54.678 1.00 0.00 O ATOM 2415 CB GLU 354 6.374 11.441 54.306 1.00 0.00 C ATOM 2416 CEN GLU 354 5.363 10.167 54.814 1.00 0.00 C ATOM 2417 H GLU 354 5.398 13.759 53.844 1.00 0.00 H ATOM 2418 N LEU 355 8.575 12.929 52.679 1.00 0.00 N ATOM 2419 CA LEU 355 9.845 12.921 51.962 1.00 0.00 C ATOM 2420 C LEU 355 10.911 13.699 52.722 1.00 0.00 C ATOM 2421 O LEU 355 12.047 13.244 52.858 1.00 0.00 O ATOM 2422 CB LEU 355 9.663 13.501 50.554 1.00 0.00 C ATOM 2423 CEN LEU 355 9.583 12.853 49.159 1.00 0.00 C ATOM 2424 H LEU 355 7.723 13.109 52.167 1.00 0.00 H ATOM 2425 N GLY 356 10.539 14.875 53.216 1.00 0.00 N ATOM 2426 CA GLY 356 11.463 15.719 53.964 1.00 0.00 C ATOM 2427 C GLY 356 12.255 14.905 54.979 1.00 0.00 C ATOM 2428 O GLY 356 13.469 15.062 55.105 1.00 0.00 O ATOM 2429 CEN GLY 356 11.463 15.720 53.965 1.00 0.00 C ATOM 2430 H GLY 356 9.591 15.192 53.070 1.00 0.00 H ATOM 2431 N ASN 357 11.560 14.034 55.703 1.00 0.00 N ATOM 2432 CA ASN 357 12.197 13.193 56.709 1.00 0.00 C ATOM 2433 C ASN 357 13.489 12.584 56.181 1.00 0.00 C ATOM 2434 O ASN 357 14.509 12.576 56.868 1.00 0.00 O ATOM 2435 CB ASN 357 11.261 12.100 57.192 1.00 0.00 C ATOM 2436 CEN ASN 357 10.565 11.950 57.963 1.00 0.00 C ATOM 2437 H ASN 357 10.564 13.952 55.552 1.00 0.00 H ATOM 2438 N ILE 358 13.438 12.074 54.954 1.00 0.00 N ATOM 2439 CA ILE 358 14.605 11.462 54.330 1.00 0.00 C ATOM 2440 C ILE 358 15.851 12.313 54.537 1.00 0.00 C ATOM 2441 O ILE 358 16.917 11.799 54.875 1.00 0.00 O ATOM 2442 CB ILE 358 14.389 11.241 52.822 1.00 0.00 C ATOM 2443 CEN ILE 358 13.987 10.566 52.068 1.00 0.00 C ATOM 2444 H ILE 358 12.568 12.111 54.441 1.00 0.00 H ATOM 2445 N ILE 359 15.710 13.618 54.333 1.00 0.00 N ATOM 2446 CA ILE 359 16.824 14.545 54.496 1.00 0.00 C ATOM 2447 C ILE 359 17.599 14.254 55.774 1.00 0.00 C ATOM 2448 O ILE 359 18.829 14.230 55.774 1.00 0.00 O ATOM 2449 CB ILE 359 16.343 16.008 54.519 1.00 0.00 C ATOM 2450 CEN ILE 359 16.086 16.872 53.906 1.00 0.00 C ATOM 2451 H ILE 359 14.807 13.978 54.057 1.00 0.00 H ATOM 2452 N VAL 360 16.871 14.034 56.864 1.00 0.00 N ATOM 2453 CA VAL 360 17.489 13.744 58.153 1.00 0.00 C ATOM 2454 C VAL 360 18.613 12.726 58.008 1.00 0.00 C ATOM 2455 O VAL 360 19.692 12.894 58.575 1.00 0.00 O ATOM 2456 CB VAL 360 16.458 13.216 59.168 1.00 0.00 C ATOM 2457 CEN VAL 360 16.112 13.377 59.741 1.00 0.00 C ATOM 2458 H VAL 360 15.864 14.068 56.798 1.00 0.00 H ATOM 2459 N ALA 361 18.351 11.669 57.246 1.00 0.00 N ATOM 2460 CA ALA 361 19.341 10.620 57.026 1.00 0.00 C ATOM 2461 C ALA 361 20.711 11.212 56.722 1.00 0.00 C ATOM 2462 O ALA 361 21.724 10.767 57.263 1.00 0.00 O ATOM 2463 CB ALA 361 18.895 9.700 55.899 1.00 0.00 C ATOM 2464 CEN ALA 361 18.896 9.702 55.899 1.00 0.00 C ATOM 2465 H ALA 361 17.445 11.589 56.809 1.00 0.00 H ATOM 2466 N TRP 362 20.738 12.217 55.854 1.00 0.00 N ATOM 2467 CA TRP 362 21.984 12.872 55.476 1.00 0.00 C ATOM 2468 C TRP 362 22.848 13.158 56.698 1.00 0.00 C ATOM 2469 O TRP 362 24.054 12.914 56.688 1.00 0.00 O ATOM 2470 CB TRP 362 21.697 14.170 54.721 1.00 0.00 C ATOM 2471 CEN TRP 362 21.925 14.947 53.166 1.00 0.00 C ATOM 2472 H TRP 362 19.871 12.536 55.444 1.00 0.00 H ATOM 2473 N ASN 363 22.223 13.676 57.749 1.00 0.00 N ATOM 2474 CA ASN 363 22.933 13.997 58.982 1.00 0.00 C ATOM 2475 C ASN 363 23.875 12.870 59.384 1.00 0.00 C ATOM 2476 O ASN 363 25.025 13.110 59.753 1.00 0.00 O ATOM 2477 CB ASN 363 21.971 14.306 60.113 1.00 0.00 C ATOM 2478 CEN ASN 363 21.504 15.146 60.537 1.00 0.00 C ATOM 2479 H ASN 363 21.230 13.854 57.693 1.00 0.00 H ATOM 2480 N PRO 364 23.381 11.639 59.310 1.00 0.00 N ATOM 2481 CA PRO 364 24.179 10.470 59.666 1.00 0.00 C ATOM 2482 C PRO 364 25.577 10.554 59.070 1.00 0.00 C ATOM 2483 O PRO 364 26.568 10.283 59.746 1.00 0.00 O ATOM 2484 CB PRO 364 23.379 9.284 59.103 1.00 0.00 C ATOM 2485 CEN PRO 364 22.281 10.556 58.501 1.00 0.00 C ATOM 2486 N ASN 365 25.650 10.932 57.798 1.00 0.00 N ATOM 2487 CA ASN 365 26.928 11.054 57.106 1.00 0.00 C ATOM 2488 C ASN 365 27.955 11.774 57.970 1.00 0.00 C ATOM 2489 O ASN 365 29.105 11.347 58.070 1.00 0.00 O ATOM 2490 CB ASN 365 26.773 11.763 55.773 1.00 0.00 C ATOM 2491 CEN ASN 365 26.611 11.509 54.767 1.00 0.00 C ATOM 2492 H ASN 365 24.797 11.142 57.297 1.00 0.00 H ATOM 2493 N LEU 366 27.533 12.870 58.592 1.00 0.00 N ATOM 2494 CA LEU 366 28.416 13.653 59.448 1.00 0.00 C ATOM 2495 C LEU 366 29.225 12.753 60.374 1.00 0.00 C ATOM 2496 O LEU 366 30.431 12.937 60.536 1.00 0.00 O ATOM 2497 CB LEU 366 27.603 14.665 60.264 1.00 0.00 C ATOM 2498 CEN LEU 366 27.400 16.187 60.139 1.00 0.00 C ATOM 2499 H LEU 366 26.576 13.168 58.468 1.00 0.00 H ATOM 2500 N TRP 367 28.554 11.779 60.980 1.00 0.00 N ATOM 2501 CA TRP 367 29.209 10.849 61.891 1.00 0.00 C ATOM 2502 C TRP 367 30.529 10.352 61.316 1.00 0.00 C ATOM 2503 O TRP 367 31.542 10.300 62.014 1.00 0.00 O ATOM 2504 CB TRP 367 28.290 9.663 62.194 1.00 0.00 C ATOM 2505 CEN TRP 367 27.441 8.870 63.507 1.00 0.00 C ATOM 2506 H TRP 367 27.564 11.681 60.803 1.00 0.00 H ATOM 2507 N LYS 368 30.513 9.988 60.038 1.00 0.00 N ATOM 2508 CA LYS 368 31.709 9.494 59.366 1.00 0.00 C ATOM 2509 C LYS 368 32.919 10.359 59.691 1.00 0.00 C ATOM 2510 O LYS 368 34.000 9.848 59.984 1.00 0.00 O ATOM 2511 CB LYS 368 31.491 9.442 57.853 1.00 0.00 C ATOM 2512 CEN LYS 368 31.115 8.293 56.117 1.00 0.00 C ATOM 2513 H LYS 368 29.649 10.055 59.518 1.00 0.00 H ATOM 2514 N LYS 369 32.733 11.674 59.639 1.00 0.00 N ATOM 2515 CA LYS 369 33.810 12.613 59.927 1.00 0.00 C ATOM 2516 C LYS 369 34.579 12.202 61.175 1.00 0.00 C ATOM 2517 O LYS 369 35.810 12.222 61.193 1.00 0.00 O ATOM 2518 CB LYS 369 33.256 14.029 60.093 1.00 0.00 C ATOM 2519 CEN LYS 369 32.972 15.968 59.294 1.00 0.00 C ATOM 2520 H LYS 369 31.821 12.032 59.392 1.00 0.00 H ATOM 2521 N GLY 370 33.847 11.830 62.220 1.00 0.00 N ATOM 2522 CA GLY 370 34.459 11.413 63.477 1.00 0.00 C ATOM 2523 C GLY 370 35.621 10.459 63.232 1.00 0.00 C ATOM 2524 O GLY 370 36.687 10.597 63.832 1.00 0.00 O ATOM 2525 CEN GLY 370 34.459 11.413 63.477 1.00 0.00 C ATOM 2526 H GLY 370 32.840 11.836 62.142 1.00 0.00 H ATOM 2527 N THR 371 35.409 9.490 62.348 1.00 0.00 N ATOM 2528 CA THR 371 36.438 8.510 62.023 1.00 0.00 C ATOM 2529 C THR 371 37.790 9.181 61.813 1.00 0.00 C ATOM 2530 O THR 371 38.812 8.711 62.314 1.00 0.00 O ATOM 2531 CB THR 371 36.075 7.706 60.761 1.00 0.00 C ATOM 2532 CEN THR 371 35.722 7.347 60.465 1.00 0.00 C ATOM 2533 H THR 371 34.511 9.431 61.889 1.00 0.00 H ATOM 2534 N ASN 372 37.790 10.281 61.068 1.00 0.00 N ATOM 2535 CA ASN 372 39.017 11.019 60.791 1.00 0.00 C ATOM 2536 C ASN 372 39.854 11.190 62.051 1.00 0.00 C ATOM 2537 O ASN 372 41.068 10.992 62.033 1.00 0.00 O ATOM 2538 CB ASN 372 38.722 12.372 60.169 1.00 0.00 C ATOM 2539 CEN ASN 372 38.628 12.788 59.209 1.00 0.00 C ATOM 2540 H ASN 372 36.918 10.616 60.685 1.00 0.00 H ATOM 2541 N GLY 373 39.197 11.560 63.146 1.00 0.00 N ATOM 2542 CA GLY 373 39.881 11.759 64.418 1.00 0.00 C ATOM 2543 C GLY 373 40.858 10.626 64.702 1.00 0.00 C ATOM 2544 O GLY 373 41.993 10.861 65.116 1.00 0.00 O ATOM 2545 CEN GLY 373 39.880 11.759 64.419 1.00 0.00 C ATOM 2546 H GLY 373 38.199 11.707 63.095 1.00 0.00 H ATOM 2547 N TYR 374 40.411 9.395 64.477 1.00 0.00 N ATOM 2548 CA TYR 374 41.246 8.222 64.708 1.00 0.00 C ATOM 2549 C TYR 374 42.647 8.425 64.148 1.00 0.00 C ATOM 2550 O TYR 374 43.640 8.111 64.804 1.00 0.00 O ATOM 2551 CB TYR 374 40.606 6.979 64.085 1.00 0.00 C ATOM 2552 CEN TYR 374 39.657 5.579 64.541 1.00 0.00 C ATOM 2553 H TYR 374 39.467 9.268 64.137 1.00 0.00 H ATOM 2554 N PRO 375 42.722 8.951 62.929 1.00 0.00 N ATOM 2555 CA PRO 375 44.003 9.198 62.279 1.00 0.00 C ATOM 2556 C PRO 375 44.992 9.848 63.237 1.00 0.00 C ATOM 2557 O PRO 375 46.156 9.452 63.305 1.00 0.00 O ATOM 2558 CB PRO 375 43.653 10.117 61.096 1.00 0.00 C ATOM 2559 CEN PRO 375 41.998 10.018 61.757 1.00 0.00 C ATOM 2560 N ILE 376 44.523 10.847 63.975 1.00 0.00 N ATOM 2561 CA ILE 376 45.366 11.554 64.933 1.00 0.00 C ATOM 2562 C ILE 376 46.196 10.582 65.760 1.00 0.00 C ATOM 2563 O ILE 376 47.392 10.788 65.963 1.00 0.00 O ATOM 2564 CB ILE 376 44.530 12.436 65.879 1.00 0.00 C ATOM 2565 CEN ILE 376 44.059 13.412 66.006 1.00 0.00 C ATOM 2566 H ILE 376 43.557 11.124 63.872 1.00 0.00 H ATOM 2567 N PHE 377 45.553 9.521 66.236 1.00 0.00 N ATOM 2568 CA PHE 377 46.231 8.514 67.044 1.00 0.00 C ATOM 2569 C PHE 377 47.576 8.135 66.436 1.00 0.00 C ATOM 2570 O PHE 377 48.581 8.036 67.141 1.00 0.00 O ATOM 2571 CB PHE 377 45.352 7.270 67.194 1.00 0.00 C ATOM 2572 CEN PHE 377 44.355 6.642 68.260 1.00 0.00 C ATOM 2573 H PHE 377 44.570 9.409 66.034 1.00 0.00 H ATOM 2574 N GLN 378 47.588 7.922 65.125 1.00 0.00 N ATOM 2575 CA GLN 378 48.810 7.553 64.419 1.00 0.00 C ATOM 2576 C GLN 378 49.984 8.417 64.864 1.00 0.00 C ATOM 2577 O GLN 378 51.079 7.912 65.112 1.00 0.00 O ATOM 2578 CB GLN 378 48.616 7.684 62.907 1.00 0.00 C ATOM 2579 CEN GLN 378 48.299 6.800 61.434 1.00 0.00 C ATOM 2580 H GLN 378 46.730 8.020 64.603 1.00 0.00 H ATOM 2581 N TRP 379 49.750 9.721 64.961 1.00 0.00 N ATOM 2582 CA TRP 379 50.787 10.657 65.375 1.00 0.00 C ATOM 2583 C TRP 379 51.556 10.129 66.581 1.00 0.00 C ATOM 2584 O TRP 379 52.785 10.190 66.620 1.00 0.00 O ATOM 2585 CB TRP 379 50.176 12.021 65.700 1.00 0.00 C ATOM 2586 CEN TRP 379 50.191 13.701 65.197 1.00 0.00 C ATOM 2587 H TRP 379 48.828 10.072 64.743 1.00 0.00 H ATOM 2588 N SER 380 50.825 9.612 67.562 1.00 0.00 N ATOM 2589 CA SER 380 51.437 9.072 68.771 1.00 0.00 C ATOM 2590 C SER 380 52.636 8.195 68.436 1.00 0.00 C ATOM 2591 O SER 380 53.689 8.299 69.066 1.00 0.00 O ATOM 2592 CB SER 380 50.414 8.287 69.567 1.00 0.00 C ATOM 2593 CEN SER 380 49.988 7.964 69.670 1.00 0.00 C ATOM 2594 H SER 380 49.820 9.592 67.468 1.00 0.00 H ATOM 2595 N GLU 381 52.471 7.329 67.440 1.00 0.00 N ATOM 2596 CA GLU 381 53.540 6.431 67.021 1.00 0.00 C ATOM 2597 C GLU 381 54.869 7.169 66.913 1.00 0.00 C ATOM 2598 O GLU 381 55.646 6.883 67.474 1.00 0.00 O ATOM 2599 CB GLU 381 53.193 5.775 65.682 1.00 0.00 C ATOM 2600 CEN GLU 381 52.603 4.441 64.802 1.00 0.00 C ATOM 2601 H GLU 381 51.582 7.293 66.963 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 152 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.81 58.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 12.74 100.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 78.33 56.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 75.16 70.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.16 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.16 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3924 CRMSCA SECONDARY STRUCTURE . . 12.07 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.32 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.31 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.25 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 11.86 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.38 129 100.0 129 CRMSMC BURIED . . . . . . . . 11.45 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.58 28 21.5 130 CRMSSC RELIABLE SIDE CHAINS . 12.58 28 24.6 114 CRMSSC SECONDARY STRUCTURE . . 12.57 10 24.4 41 CRMSSC SURFACE . . . . . . . . 12.57 25 20.8 120 CRMSSC BURIED . . . . . . . . 12.63 3 30.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.25 152 59.8 254 CRMSALL SECONDARY STRUCTURE . . 11.86 54 63.5 85 CRMSALL SURFACE . . . . . . . . 12.38 129 57.6 224 CRMSALL BURIED . . . . . . . . 11.45 23 76.7 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.496 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 11.456 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 11.645 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.721 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.603 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 11.277 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 11.712 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 10.991 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.920 1.000 0.500 28 21.5 130 ERRSC RELIABLE SIDE CHAINS . 11.920 1.000 0.500 28 24.6 114 ERRSC SECONDARY STRUCTURE . . 11.675 1.000 0.500 10 24.4 41 ERRSC SURFACE . . . . . . . . 11.867 1.000 0.500 25 20.8 120 ERRSC BURIED . . . . . . . . 12.358 1.000 0.500 3 30.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.603 1.000 0.500 152 59.8 254 ERRALL SECONDARY STRUCTURE . . 11.277 1.000 0.500 54 63.5 85 ERRALL SURFACE . . . . . . . . 11.712 1.000 0.500 129 57.6 224 ERRALL BURIED . . . . . . . . 10.991 1.000 0.500 23 76.7 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 1 13 31 31 DISTCA CA (P) 0.00 3.23 3.23 3.23 41.94 31 DISTCA CA (RMS) 0.00 1.27 1.27 1.27 8.00 DISTCA ALL (N) 0 1 3 6 61 152 254 DISTALL ALL (P) 0.00 0.39 1.18 2.36 24.02 254 DISTALL ALL (RMS) 0.00 1.27 1.89 3.11 7.96 DISTALL END of the results output