####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS346_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS346_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 351 - 365 4.99 20.93 LCS_AVERAGE: 43.39 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 351 - 357 0.49 21.80 LONGEST_CONTINUOUS_SEGMENT: 7 352 - 358 1.98 23.19 LONGEST_CONTINUOUS_SEGMENT: 7 371 - 377 1.62 26.50 LCS_AVERAGE: 19.04 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 351 - 357 0.49 21.80 LCS_AVERAGE: 14.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT A 352 A 352 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT E 353 E 353 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT E 354 E 354 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT L 355 L 355 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT G 356 G 356 7 7 15 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT N 357 N 357 7 7 15 3 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT I 358 I 358 3 7 15 3 3 3 4 4 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT I 359 I 359 3 4 15 3 3 3 4 6 8 9 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT V 360 V 360 4 4 15 0 4 4 4 4 4 8 10 11 11 12 13 14 14 15 16 16 16 16 17 LCS_GDT A 361 A 361 4 4 15 3 4 4 4 4 5 7 8 10 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT W 362 W 362 4 4 15 3 4 4 5 6 7 8 9 11 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT N 363 N 363 4 4 15 3 4 4 4 4 7 8 9 11 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT P 364 P 364 3 5 15 3 3 3 4 4 5 8 9 11 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT N 365 N 365 3 5 15 3 3 3 5 6 7 8 9 11 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT L 366 L 366 3 5 12 3 3 4 5 6 7 8 9 11 11 12 13 14 14 15 16 16 17 18 19 LCS_GDT W 367 W 367 3 5 12 3 3 4 5 6 7 8 9 11 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT K 368 K 368 3 5 12 3 3 4 4 6 7 7 8 10 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT K 369 K 369 4 5 12 3 4 4 5 6 7 8 9 11 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT G 370 G 370 4 4 12 3 4 4 4 4 5 8 9 11 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT T 371 T 371 4 7 12 3 4 4 6 7 7 7 9 11 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT N 372 N 372 5 7 12 5 5 5 6 7 7 7 8 9 11 11 13 13 14 15 15 15 17 18 19 LCS_GDT G 373 G 373 5 7 12 5 5 5 6 7 7 7 8 9 11 11 12 12 13 13 14 14 17 18 19 LCS_GDT Y 374 Y 374 5 7 12 5 5 5 6 7 7 7 8 9 11 11 12 12 13 14 15 15 16 18 19 LCS_GDT P 375 P 375 5 7 12 5 5 5 6 7 7 7 8 9 11 11 11 11 13 13 14 14 15 18 18 LCS_GDT I 376 I 376 5 7 12 5 5 5 6 7 7 7 8 9 11 11 11 11 13 13 14 14 17 18 19 LCS_GDT F 377 F 377 3 7 12 3 3 4 6 7 7 7 8 9 11 11 11 11 13 13 14 14 15 17 18 LCS_GDT Q 378 Q 378 3 6 12 3 3 4 4 5 5 6 8 9 11 11 11 11 13 13 14 14 15 18 19 LCS_GDT W 379 W 379 3 6 12 3 3 4 4 5 5 6 8 9 11 11 13 14 14 15 15 15 17 18 19 LCS_GDT S 380 S 380 3 6 12 1 3 4 4 5 5 7 9 11 11 12 13 14 14 15 15 15 17 18 19 LCS_GDT E 381 E 381 3 6 12 0 3 3 4 5 5 6 7 11 11 12 13 14 14 15 15 15 17 18 19 LCS_AVERAGE LCS_A: 25.60 ( 14.36 19.04 43.39 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 7 7 7 7 8 9 10 11 11 12 13 14 14 15 16 16 17 18 19 GDT PERCENT_AT 19.35 22.58 22.58 22.58 22.58 25.81 29.03 32.26 35.48 35.48 38.71 41.94 45.16 45.16 48.39 51.61 51.61 54.84 58.06 61.29 GDT RMS_LOCAL 0.19 0.49 0.49 0.49 0.49 2.15 2.22 2.57 2.92 2.92 3.70 3.96 4.30 4.30 4.99 5.46 5.46 5.88 6.20 6.56 GDT RMS_ALL_AT 21.59 21.80 21.80 21.80 21.80 23.41 22.95 22.08 21.87 21.87 17.99 17.36 17.30 17.30 20.93 19.28 19.28 18.05 18.33 18.30 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.449 0 0.125 0.533 3.333 61.071 62.381 LGA A 352 A 352 1.251 0 0.030 0.037 1.655 79.286 81.524 LGA E 353 E 353 0.877 0 0.061 0.809 2.438 85.952 77.037 LGA E 354 E 354 1.824 0 0.043 0.731 3.229 70.952 63.386 LGA L 355 L 355 2.115 0 0.047 0.228 3.560 66.786 61.190 LGA G 356 G 356 1.757 0 0.554 0.554 2.806 68.929 68.929 LGA N 357 N 357 2.330 0 0.586 1.088 7.440 71.190 49.464 LGA I 358 I 358 3.682 0 0.608 0.891 7.845 59.524 35.714 LGA I 359 I 359 3.034 0 0.598 0.661 3.527 50.119 53.631 LGA V 360 V 360 4.288 0 0.609 0.855 7.654 32.976 24.830 LGA A 361 A 361 8.733 0 0.696 0.662 11.168 5.119 4.095 LGA W 362 W 362 10.040 0 0.318 1.521 20.000 2.024 0.578 LGA N 363 N 363 5.658 0 0.575 0.927 8.625 11.190 36.369 LGA P 364 P 364 11.603 0 0.655 0.543 13.476 0.357 0.272 LGA N 365 N 365 10.641 0 0.331 0.363 12.809 0.000 3.036 LGA L 366 L 366 13.332 0 0.605 1.411 14.501 0.000 0.000 LGA W 367 W 367 17.098 0 0.095 0.810 20.099 0.000 0.000 LGA K 368 K 368 21.737 0 0.587 1.009 24.499 0.000 0.000 LGA K 369 K 369 25.145 0 0.617 1.549 31.035 0.000 0.000 LGA G 370 G 370 28.367 0 0.154 0.154 31.513 0.000 0.000 LGA T 371 T 371 34.520 0 0.664 0.610 36.060 0.000 0.000 LGA N 372 N 372 36.484 0 0.288 1.048 37.389 0.000 0.000 LGA G 373 G 373 36.474 0 0.150 0.150 36.546 0.000 0.000 LGA Y 374 Y 374 35.331 0 0.145 0.404 35.908 0.000 0.000 LGA P 375 P 375 35.493 0 0.501 0.672 36.048 0.000 0.000 LGA I 376 I 376 35.171 0 0.081 1.045 39.354 0.000 0.000 LGA F 377 F 377 32.360 0 0.591 1.502 33.389 0.000 0.000 LGA Q 378 Q 378 29.086 0 0.357 0.796 31.812 0.000 0.000 LGA W 379 W 379 27.336 0 0.731 1.027 27.841 0.000 0.000 LGA S 380 S 380 28.058 0 0.573 0.740 31.435 0.000 0.000 LGA E 381 E 381 34.485 0 0.475 1.604 40.458 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 12.637 12.513 12.986 21.467 20.079 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.57 32.258 28.459 0.375 LGA_LOCAL RMSD: 2.565 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.083 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 12.637 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.015229 * X + -0.978678 * Y + -0.204834 * Z + 46.317142 Y_new = 0.309628 * X + 0.190172 * Y + -0.931647 * Z + -19.044695 Z_new = 0.950736 * X + -0.077610 * Y + 0.300130 * Z + 77.634430 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.619942 -1.255601 -0.253046 [DEG: 92.8158 -71.9407 -14.4985 ] ZXZ: -0.216419 1.265968 1.652248 [DEG: -12.3999 72.5346 94.6668 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS346_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS346_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.57 28.459 12.64 REMARK ---------------------------------------------------------- MOLECULE T0537TS346_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2qy1_A 1pe9_A 1rmg_A 1xg2_A 1gq8_A 1ia5_A ATOM 2529 N SER 351 2.431 13.667 49.424 1.00 98.57 N ATOM 2530 CA SER 351 2.391 14.129 50.773 1.00 98.57 C ATOM 2531 CB SER 351 1.932 13.011 51.734 1.00 98.57 C ATOM 2532 OG SER 351 2.120 13.421 53.083 1.00 98.57 O ATOM 2533 C SER 351 3.762 14.609 51.151 1.00 98.57 C ATOM 2534 O SER 351 4.757 13.902 51.017 1.00 98.57 O ATOM 2535 N ALA 352 3.838 15.852 51.655 1.00 48.13 N ATOM 2536 CA ALA 352 5.083 16.490 51.987 1.00 48.13 C ATOM 2537 CB ALA 352 4.884 17.961 52.404 1.00 48.13 C ATOM 2538 C ALA 352 5.799 15.734 53.077 1.00 48.13 C ATOM 2539 O ALA 352 7.026 15.636 53.065 1.00 48.13 O ATOM 2540 N GLU 353 5.056 15.179 54.056 1.00 56.22 N ATOM 2541 CA GLU 353 5.656 14.489 55.171 1.00 56.22 C ATOM 2542 CB GLU 353 4.619 14.093 56.252 1.00 56.22 C ATOM 2543 CG GLU 353 3.909 15.290 56.890 1.00 56.22 C ATOM 2544 CD GLU 353 2.924 14.765 57.927 1.00 56.22 C ATOM 2545 OE1 GLU 353 2.898 13.525 58.147 1.00 56.22 O ATOM 2546 OE2 GLU 353 2.185 15.600 58.516 1.00 56.22 O ATOM 2547 C GLU 353 6.389 13.267 54.681 1.00 56.22 C ATOM 2548 O GLU 353 7.421 12.892 55.239 1.00 56.22 O ATOM 2549 N GLU 354 5.858 12.589 53.648 1.00104.20 N ATOM 2550 CA GLU 354 6.511 11.431 53.102 1.00104.20 C ATOM 2551 CB GLU 354 5.532 10.538 52.303 1.00104.20 C ATOM 2552 CG GLU 354 4.433 11.217 51.471 1.00104.20 C ATOM 2553 CD GLU 354 3.607 10.126 50.780 1.00104.20 C ATOM 2554 OE1 GLU 354 3.736 8.941 51.189 1.00104.20 O ATOM 2555 OE2 GLU 354 2.842 10.467 49.840 1.00104.20 O ATOM 2556 C GLU 354 7.774 11.777 52.346 1.00104.20 C ATOM 2557 O GLU 354 8.743 11.019 52.362 1.00104.20 O ATOM 2558 N LEU 355 7.795 12.930 51.655 1.00101.42 N ATOM 2559 CA LEU 355 8.904 13.356 50.854 1.00101.42 C ATOM 2560 CB LEU 355 8.526 14.510 49.922 1.00101.42 C ATOM 2561 CG LEU 355 7.401 14.123 48.941 1.00101.42 C ATOM 2562 CD1 LEU 355 7.039 15.287 48.006 1.00101.42 C ATOM 2563 CD2 LEU 355 7.733 12.828 48.186 1.00101.42 C ATOM 2564 C LEU 355 10.077 13.775 51.692 1.00101.42 C ATOM 2565 O LEU 355 11.215 13.605 51.258 1.00101.42 O ATOM 2566 N GLY 356 9.842 14.384 52.875 1.00163.76 N ATOM 2567 CA GLY 356 10.937 14.835 53.684 1.00163.76 C ATOM 2568 C GLY 356 11.378 13.725 54.577 1.00163.76 C ATOM 2569 O GLY 356 10.997 13.657 55.746 1.00163.76 O ATOM 2570 N ASN 357 12.260 12.865 54.060 1.00204.58 N ATOM 2571 CA ASN 357 12.739 11.785 54.861 1.00204.58 C ATOM 2572 CB ASN 357 13.139 10.567 54.024 1.00204.58 C ATOM 2573 CG ASN 357 11.881 10.159 53.277 1.00204.58 C ATOM 2574 OD1 ASN 357 11.740 10.417 52.084 1.00204.58 O ATOM 2575 ND2 ASN 357 10.933 9.500 53.999 1.00204.58 N ATOM 2576 C ASN 357 13.930 12.272 55.620 1.00204.58 C ATOM 2577 O ASN 357 14.462 13.345 55.341 1.00204.58 O ATOM 2578 N ILE 358 14.376 11.485 56.619 1.00152.32 N ATOM 2579 CA ILE 358 15.483 11.880 57.437 1.00152.32 C ATOM 2580 CB ILE 358 15.906 10.818 58.412 1.00152.32 C ATOM 2581 CG2 ILE 358 17.207 11.290 59.077 1.00152.32 C ATOM 2582 CG1 ILE 358 14.777 10.497 59.409 1.00152.32 C ATOM 2583 CD1 ILE 358 13.589 9.765 58.790 1.00152.32 C ATOM 2584 C ILE 358 16.636 12.156 56.526 1.00152.32 C ATOM 2585 O ILE 358 17.046 11.275 55.766 1.00152.32 O ATOM 2586 N ILE 359 17.162 13.410 56.611 1.00245.32 N ATOM 2587 CA ILE 359 18.238 13.929 55.803 1.00245.32 C ATOM 2588 CB ILE 359 17.781 15.061 54.890 1.00245.32 C ATOM 2589 CG2 ILE 359 19.019 15.633 54.179 1.00245.32 C ATOM 2590 CG1 ILE 359 16.689 14.560 53.930 1.00245.32 C ATOM 2591 CD1 ILE 359 15.942 15.683 53.211 1.00245.32 C ATOM 2592 C ILE 359 19.294 14.494 56.726 1.00245.32 C ATOM 2593 O ILE 359 18.970 15.244 57.649 1.00245.32 O ATOM 2594 N VAL 360 20.582 14.134 56.513 1.00308.08 N ATOM 2595 CA VAL 360 21.625 14.609 57.394 1.00308.08 C ATOM 2596 CB VAL 360 22.242 13.534 58.245 1.00308.08 C ATOM 2597 CG1 VAL 360 23.013 12.569 57.329 1.00308.08 C ATOM 2598 CG2 VAL 360 23.108 14.197 59.330 1.00308.08 C ATOM 2599 C VAL 360 22.751 15.208 56.598 1.00308.08 C ATOM 2600 O VAL 360 22.901 14.936 55.407 1.00308.08 O ATOM 2601 N ALA 361 23.558 16.063 57.257 1.00248.69 N ATOM 2602 CA ALA 361 24.642 16.736 56.607 1.00248.69 C ATOM 2603 CB ALA 361 24.341 18.201 56.263 1.00248.69 C ATOM 2604 C ALA 361 25.790 16.712 57.569 1.00248.69 C ATOM 2605 O ALA 361 25.686 16.086 58.622 1.00248.69 O ATOM 2606 N TRP 362 26.924 17.336 57.180 1.00238.41 N ATOM 2607 CA TRP 362 28.061 17.368 58.049 1.00238.41 C ATOM 2608 CB TRP 362 27.697 18.104 59.371 1.00238.41 C ATOM 2609 CG TRP 362 28.599 17.935 60.558 1.00238.41 C ATOM 2610 CD2 TRP 362 29.775 18.705 60.822 1.00238.41 C ATOM 2611 CD1 TRP 362 28.479 17.041 61.580 1.00238.41 C ATOM 2612 NE1 TRP 362 29.507 17.212 62.471 1.00238.41 N ATOM 2613 CE2 TRP 362 30.317 18.233 62.017 1.00238.41 C ATOM 2614 CE3 TRP 362 30.364 19.726 60.127 1.00238.41 C ATOM 2615 CZ2 TRP 362 31.454 18.773 62.541 1.00238.41 C ATOM 2616 CZ3 TRP 362 31.513 20.268 60.658 1.00238.41 C ATOM 2617 CH2 TRP 362 32.047 19.802 61.842 1.00238.41 C ATOM 2618 C TRP 362 28.522 15.952 58.234 1.00238.41 C ATOM 2619 O TRP 362 29.166 15.609 59.222 1.00238.41 O ATOM 2620 N ASN 363 28.204 15.076 57.256 1.00106.07 N ATOM 2621 CA ASN 363 28.655 13.717 57.347 1.00106.07 C ATOM 2622 CB ASN 363 28.010 12.783 56.320 1.00106.07 C ATOM 2623 CG ASN 363 26.546 12.648 56.717 1.00106.07 C ATOM 2624 OD1 ASN 363 26.117 13.220 57.719 1.00106.07 O ATOM 2625 ND2 ASN 363 25.761 11.873 55.923 1.00106.07 N ATOM 2626 C ASN 363 30.138 13.645 57.157 1.00106.07 C ATOM 2627 O ASN 363 30.808 12.901 57.870 1.00106.07 O ATOM 2628 N PRO 364 30.698 14.388 56.239 1.00215.23 N ATOM 2629 CA PRO 364 32.110 14.261 56.038 1.00215.23 C ATOM 2630 CD PRO 364 30.008 14.740 55.008 1.00215.23 C ATOM 2631 CB PRO 364 32.424 14.945 54.708 1.00215.23 C ATOM 2632 CG PRO 364 31.100 14.838 53.927 1.00215.23 C ATOM 2633 C PRO 364 32.919 14.734 57.195 1.00215.23 C ATOM 2634 O PRO 364 32.705 15.846 57.673 1.00215.23 O ATOM 2635 N ASN 365 33.877 13.901 57.633 1.00150.20 N ATOM 2636 CA ASN 365 34.735 14.220 58.722 1.00150.20 C ATOM 2637 CB ASN 365 34.908 13.055 59.708 1.00150.20 C ATOM 2638 CG ASN 365 33.582 12.885 60.438 1.00150.20 C ATOM 2639 OD1 ASN 365 32.738 13.779 60.418 1.00150.20 O ATOM 2640 ND2 ASN 365 33.393 11.715 61.103 1.00150.20 N ATOM 2641 C ASN 365 36.075 14.541 58.154 1.00150.20 C ATOM 2642 O ASN 365 37.099 14.057 58.637 1.00150.20 O ATOM 2643 N LEU 366 36.075 15.433 57.135 1.00251.96 N ATOM 2644 CA LEU 366 37.285 15.988 56.587 1.00251.96 C ATOM 2645 CB LEU 366 37.252 16.045 55.023 1.00251.96 C ATOM 2646 CG LEU 366 37.065 14.670 54.358 1.00251.96 C ATOM 2647 CD1 LEU 366 35.672 14.098 54.671 1.00251.96 C ATOM 2648 CD2 LEU 366 37.364 14.725 52.851 1.00251.96 C ATOM 2649 C LEU 366 37.281 17.383 57.088 1.00251.96 C ATOM 2650 O LEU 366 36.575 18.211 56.517 1.00251.96 O ATOM 2651 N TRP 367 37.995 17.751 58.178 1.00576.66 N ATOM 2652 CA TRP 367 37.627 19.076 58.594 1.00576.66 C ATOM 2653 CB TRP 367 36.742 19.187 59.871 1.00576.66 C ATOM 2654 CG TRP 367 35.452 19.873 59.492 1.00576.66 C ATOM 2655 CD2 TRP 367 35.036 21.184 59.923 1.00576.66 C ATOM 2656 CD1 TRP 367 34.494 19.427 58.631 1.00576.66 C ATOM 2657 NE1 TRP 367 33.529 20.385 58.467 1.00576.66 N ATOM 2658 CE2 TRP 367 33.847 21.471 59.259 1.00576.66 C ATOM 2659 CE3 TRP 367 35.587 22.076 60.801 1.00576.66 C ATOM 2660 CZ2 TRP 367 33.194 22.655 59.459 1.00576.66 C ATOM 2661 CZ3 TRP 367 34.935 23.275 60.992 1.00576.66 C ATOM 2662 CH2 TRP 367 33.759 23.558 60.330 1.00576.66 C ATOM 2663 C TRP 367 38.720 20.098 58.690 1.00576.66 C ATOM 2664 O TRP 367 39.827 19.897 59.191 1.00576.66 O ATOM 2665 N LYS 368 38.353 21.288 58.195 1.00173.39 N ATOM 2666 CA LYS 368 39.168 22.444 58.244 1.00173.39 C ATOM 2667 CB LYS 368 38.512 23.679 57.612 1.00173.39 C ATOM 2668 CG LYS 368 38.129 23.550 56.138 1.00173.39 C ATOM 2669 CD LYS 368 37.297 24.742 55.657 1.00173.39 C ATOM 2670 CE LYS 368 36.671 24.561 54.274 1.00173.39 C ATOM 2671 NZ LYS 368 35.895 25.770 53.916 1.00173.39 N ATOM 2672 C LYS 368 39.493 22.767 59.674 1.00173.39 C ATOM 2673 O LYS 368 40.646 23.059 59.989 1.00173.39 O ATOM 2674 N LYS 369 38.507 22.683 60.589 1.00161.62 N ATOM 2675 CA LYS 369 38.748 23.066 61.956 1.00161.62 C ATOM 2676 CB LYS 369 37.492 23.004 62.840 1.00161.62 C ATOM 2677 CG LYS 369 37.857 23.250 64.290 1.00161.62 C ATOM 2678 CD LYS 369 38.131 24.724 64.612 1.00161.62 C ATOM 2679 CE LYS 369 38.501 24.995 66.071 1.00161.62 C ATOM 2680 NZ LYS 369 38.949 26.398 66.218 1.00161.62 N ATOM 2681 C LYS 369 39.818 22.212 62.571 1.00161.62 C ATOM 2682 O LYS 369 40.684 22.720 63.280 1.00161.62 O ATOM 2683 N GLY 370 39.810 20.893 62.311 1.00178.62 N ATOM 2684 CA GLY 370 40.826 20.039 62.873 1.00178.62 C ATOM 2685 C GLY 370 42.024 20.116 61.981 1.00178.62 C ATOM 2686 O GLY 370 42.161 21.047 61.188 1.00178.62 O ATOM 2687 N THR 371 42.942 19.143 62.108 1.00239.31 N ATOM 2688 CA THR 371 44.094 19.168 61.260 1.00239.31 C ATOM 2689 CB THR 371 45.227 18.313 61.745 1.00239.31 C ATOM 2690 OG1 THR 371 44.823 16.957 61.826 1.00239.31 O ATOM 2691 CG2 THR 371 45.658 18.820 63.131 1.00239.31 C ATOM 2692 C THR 371 43.648 18.639 59.940 1.00239.31 C ATOM 2693 O THR 371 42.522 18.165 59.802 1.00239.31 O ATOM 2694 N ASN 372 44.520 18.728 58.921 1.00143.64 N ATOM 2695 CA ASN 372 44.120 18.266 57.631 1.00143.64 C ATOM 2696 CB ASN 372 45.165 18.532 56.527 1.00143.64 C ATOM 2697 CG ASN 372 45.381 20.038 56.458 1.00143.64 C ATOM 2698 OD1 ASN 372 46.505 20.527 56.568 1.00143.64 O ATOM 2699 ND2 ASN 372 44.269 20.799 56.280 1.00143.64 N ATOM 2700 C ASN 372 43.855 16.796 57.737 1.00143.64 C ATOM 2701 O ASN 372 42.902 16.286 57.145 1.00143.64 O ATOM 2702 N GLY 373 44.701 16.076 58.498 1.00 87.17 N ATOM 2703 CA GLY 373 44.480 14.678 58.736 1.00 87.17 C ATOM 2704 C GLY 373 44.979 13.850 57.594 1.00 87.17 C ATOM 2705 O GLY 373 44.719 12.645 57.584 1.00 87.17 O ATOM 2706 N TYR 374 45.742 14.453 56.642 1.00279.51 N ATOM 2707 CA TYR 374 46.214 13.739 55.467 1.00279.51 C ATOM 2708 CB TYR 374 46.059 14.495 54.127 1.00279.51 C ATOM 2709 CG TYR 374 44.614 14.851 53.878 1.00279.51 C ATOM 2710 CD1 TYR 374 43.566 14.039 54.263 1.00279.51 C ATOM 2711 CD2 TYR 374 44.307 15.995 53.174 1.00279.51 C ATOM 2712 CE1 TYR 374 42.256 14.377 53.987 1.00279.51 C ATOM 2713 CE2 TYR 374 43.004 16.342 52.893 1.00279.51 C ATOM 2714 CZ TYR 374 41.971 15.534 53.302 1.00279.51 C ATOM 2715 OH TYR 374 40.634 15.885 53.017 1.00279.51 O ATOM 2716 C TYR 374 47.694 13.462 55.632 1.00279.51 C ATOM 2717 O TYR 374 48.386 14.178 56.351 1.00279.51 O ATOM 2718 N PRO 375 48.194 12.397 55.034 1.00315.66 N ATOM 2719 CA PRO 375 49.546 12.008 55.293 1.00315.66 C ATOM 2720 CD PRO 375 47.367 11.266 54.627 1.00315.66 C ATOM 2721 CB PRO 375 49.716 10.597 54.703 1.00315.66 C ATOM 2722 CG PRO 375 48.277 10.031 54.713 1.00315.66 C ATOM 2723 C PRO 375 50.695 12.959 55.073 1.00315.66 C ATOM 2724 O PRO 375 51.243 13.413 56.074 1.00315.66 O ATOM 2725 N ILE 376 51.152 13.279 53.838 1.00161.40 N ATOM 2726 CA ILE 376 52.307 14.121 53.801 1.00161.40 C ATOM 2727 CB ILE 376 53.565 13.321 53.768 1.00161.40 C ATOM 2728 CG2 ILE 376 54.755 14.288 53.902 1.00161.40 C ATOM 2729 CG1 ILE 376 53.606 12.221 54.847 1.00161.40 C ATOM 2730 CD1 ILE 376 52.781 10.976 54.511 1.00161.40 C ATOM 2731 C ILE 376 52.245 14.961 52.549 1.00161.40 C ATOM 2732 O ILE 376 51.495 14.667 51.620 1.00161.40 O ATOM 2733 N PHE 377 53.062 16.037 52.491 1.00191.64 N ATOM 2734 CA PHE 377 53.092 16.947 51.380 1.00191.64 C ATOM 2735 CB PHE 377 53.392 16.247 50.026 1.00191.64 C ATOM 2736 CG PHE 377 53.655 17.243 48.943 1.00191.64 C ATOM 2737 CD1 PHE 377 54.905 17.805 48.811 1.00191.64 C ATOM 2738 CD2 PHE 377 52.669 17.620 48.059 1.00191.64 C ATOM 2739 CE1 PHE 377 55.164 18.724 47.820 1.00191.64 C ATOM 2740 CE2 PHE 377 52.920 18.536 47.066 1.00191.64 C ATOM 2741 CZ PHE 377 54.172 19.090 46.945 1.00191.64 C ATOM 2742 C PHE 377 51.750 17.599 51.358 1.00191.64 C ATOM 2743 O PHE 377 51.337 18.203 50.370 1.00191.64 O ATOM 2744 N GLN 378 51.046 17.525 52.502 1.00264.78 N ATOM 2745 CA GLN 378 49.761 18.138 52.639 1.00264.78 C ATOM 2746 CB GLN 378 49.801 19.678 52.660 1.00264.78 C ATOM 2747 CG GLN 378 50.605 20.270 53.821 1.00264.78 C ATOM 2748 CD GLN 378 52.089 20.168 53.493 1.00264.78 C ATOM 2749 OE1 GLN 378 52.478 20.077 52.330 1.00264.78 O ATOM 2750 NE2 GLN 378 52.944 20.190 54.550 1.00264.78 N ATOM 2751 C GLN 378 48.889 17.706 51.506 1.00264.78 C ATOM 2752 O GLN 378 48.161 18.516 50.934 1.00264.78 O ATOM 2753 N TRP 379 48.936 16.409 51.149 1.00218.02 N ATOM 2754 CA TRP 379 48.080 15.954 50.096 1.00218.02 C ATOM 2755 CB TRP 379 48.817 15.572 48.796 1.00218.02 C ATOM 2756 CG TRP 379 47.899 15.399 47.605 1.00218.02 C ATOM 2757 CD2 TRP 379 47.663 14.162 46.913 1.00218.02 C ATOM 2758 CD1 TRP 379 47.165 16.348 46.955 1.00218.02 C ATOM 2759 NE1 TRP 379 46.476 15.779 45.911 1.00218.02 N ATOM 2760 CE2 TRP 379 46.776 14.434 45.871 1.00218.02 C ATOM 2761 CE3 TRP 379 48.151 12.905 47.120 1.00218.02 C ATOM 2762 CZ2 TRP 379 46.360 13.448 45.022 1.00218.02 C ATOM 2763 CZ3 TRP 379 47.723 11.911 46.267 1.00218.02 C ATOM 2764 CH2 TRP 379 46.844 12.177 45.238 1.00218.02 C ATOM 2765 C TRP 379 47.377 14.751 50.628 1.00218.02 C ATOM 2766 O TRP 379 47.703 14.261 51.708 1.00218.02 O ATOM 2767 N SER 380 46.368 14.251 49.891 1.00 39.09 N ATOM 2768 CA SER 380 45.624 13.131 50.383 1.00 39.09 C ATOM 2769 CB SER 380 44.556 12.635 49.393 1.00 39.09 C ATOM 2770 OG SER 380 45.172 12.198 48.191 1.00 39.09 O ATOM 2771 C SER 380 46.583 12.007 50.593 1.00 39.09 C ATOM 2772 O SER 380 46.595 11.377 51.649 1.00 39.09 O ATOM 2773 N GLU 381 47.433 11.742 49.585 1.00 81.66 N ATOM 2774 CA GLU 381 48.374 10.673 49.705 1.00 81.66 C ATOM 2775 CB GLU 381 49.146 10.386 48.403 1.00 81.66 C ATOM 2776 CG GLU 381 49.845 9.024 48.385 1.00 81.66 C ATOM 2777 CD GLU 381 51.163 9.130 49.143 1.00 81.66 C ATOM 2778 OE1 GLU 381 51.757 10.240 49.149 1.00 81.66 O ATOM 2779 OE2 GLU 381 51.600 8.095 49.713 1.00 81.66 O ATOM 2780 C GLU 381 49.377 11.085 50.769 1.00 81.66 C ATOM 2781 O GLU 381 49.222 10.615 51.927 1.00 81.66 O ATOM 2782 OXT GLU 381 50.306 11.873 50.446 1.00 81.66 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.59 43.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 92.02 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.09 46.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 103.19 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.76 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 87.09 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 81.52 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 90.78 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 59.78 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.65 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 74.97 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 64.66 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.21 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 7.11 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 37.39 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 40.61 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 17.34 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 37.39 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 7.36 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 7.36 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 7.36 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.64 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.64 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.4076 CRMSCA SECONDARY STRUCTURE . . 13.31 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.54 26 100.0 26 CRMSCA BURIED . . . . . . . . 13.11 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.57 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 13.22 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.45 129 100.0 129 CRMSMC BURIED . . . . . . . . 13.23 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.53 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.61 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 14.09 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.55 120 100.0 120 CRMSSC BURIED . . . . . . . . 13.26 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.05 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 13.62 85 100.0 85 CRMSALL SURFACE . . . . . . . . 13.02 224 100.0 224 CRMSALL BURIED . . . . . . . . 13.22 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 175.385 0.840 0.857 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 157.347 0.797 0.825 11 100.0 11 ERRCA SURFACE . . . . . . . . 164.940 0.830 0.849 26 100.0 26 ERRCA BURIED . . . . . . . . 229.698 0.894 0.900 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 176.312 0.840 0.858 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 157.553 0.797 0.826 54 100.0 54 ERRMC SURFACE . . . . . . . . 165.707 0.830 0.850 129 100.0 129 ERRMC BURIED . . . . . . . . 235.791 0.896 0.902 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 203.015 0.851 0.865 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 206.374 0.850 0.865 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 162.562 0.803 0.829 41 100.0 41 ERRSC SURFACE . . . . . . . . 197.205 0.846 0.861 120 100.0 120 ERRSC BURIED . . . . . . . . 272.742 0.916 0.920 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 189.580 0.846 0.862 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 159.920 0.801 0.828 85 100.0 85 ERRALL SURFACE . . . . . . . . 182.296 0.838 0.856 224 100.0 224 ERRALL BURIED . . . . . . . . 243.965 0.901 0.906 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 15 31 31 DISTCA CA (P) 0.00 0.00 0.00 3.23 48.39 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.68 7.96 DISTCA ALL (N) 0 0 0 4 94 254 254 DISTALL ALL (P) 0.00 0.00 0.00 1.57 37.01 254 DISTALL ALL (RMS) 0.00 0.00 0.00 4.70 7.95 DISTALL END of the results output