####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS345_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS345_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 351 - 374 4.30 15.65 LCS_AVERAGE: 67.22 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 351 - 364 1.76 20.15 LCS_AVERAGE: 32.26 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 351 - 363 0.50 20.77 LCS_AVERAGE: 24.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 13 14 24 11 13 13 13 13 13 16 16 18 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT A 352 A 352 13 14 24 11 13 13 13 13 13 16 16 17 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT E 353 E 353 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT E 354 E 354 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT L 355 L 355 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT G 356 G 356 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT N 357 N 357 13 14 24 11 13 13 13 13 13 16 16 18 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT I 358 I 358 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT I 359 I 359 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT V 360 V 360 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT A 361 A 361 13 14 24 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT W 362 W 362 13 14 24 3 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT N 363 N 363 13 14 24 3 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT P 364 P 364 3 14 24 3 4 5 6 9 12 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT N 365 N 365 3 8 24 3 4 6 7 9 12 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT L 366 L 366 3 8 24 3 4 6 7 9 12 16 16 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT W 367 W 367 3 8 24 3 3 6 7 9 10 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT K 368 K 368 3 8 24 3 3 4 6 7 10 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT K 369 K 369 4 8 24 3 4 6 7 7 9 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT G 370 G 370 4 8 24 3 4 6 7 9 10 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT T 371 T 371 4 8 24 3 4 6 7 7 9 12 14 18 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT N 372 N 372 4 8 24 3 4 6 7 9 10 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT G 373 G 373 5 6 24 3 4 5 5 6 8 12 15 19 22 23 23 23 23 24 24 24 24 24 24 LCS_GDT Y 374 Y 374 5 6 24 4 4 5 5 6 7 8 8 9 11 11 11 16 22 24 24 24 24 24 24 LCS_GDT P 375 P 375 5 6 10 4 4 5 5 6 7 8 8 9 11 11 11 13 13 15 15 15 19 20 21 LCS_GDT I 376 I 376 5 6 10 4 4 5 5 6 7 8 8 9 11 11 11 13 13 15 15 15 16 18 18 LCS_GDT F 377 F 377 5 6 10 4 4 5 5 6 7 8 8 9 11 11 11 13 13 15 15 15 16 18 18 LCS_GDT Q 378 Q 378 5 6 10 3 3 5 5 6 7 8 8 9 11 11 11 13 13 15 15 15 16 18 18 LCS_GDT W 379 W 379 3 6 10 3 3 3 5 6 7 8 8 9 11 11 11 13 13 15 15 15 16 18 18 LCS_GDT S 380 S 380 3 4 10 3 3 3 3 4 4 5 5 6 6 7 8 10 11 14 15 15 16 18 18 LCS_GDT E 381 E 381 3 4 10 3 3 3 3 4 4 5 5 6 7 9 10 10 12 14 15 15 16 18 18 LCS_AVERAGE LCS_A: 41.45 ( 24.87 32.26 67.22 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 13 13 13 13 13 16 16 19 22 23 23 23 23 24 24 24 24 24 24 GDT PERCENT_AT 35.48 41.94 41.94 41.94 41.94 41.94 51.61 51.61 61.29 70.97 74.19 74.19 74.19 74.19 77.42 77.42 77.42 77.42 77.42 77.42 GDT RMS_LOCAL 0.28 0.50 0.50 0.50 0.50 0.50 2.56 2.56 3.54 3.76 3.86 3.86 3.86 3.86 4.30 4.30 4.30 4.30 4.30 4.30 GDT RMS_ALL_AT 20.87 20.77 20.77 20.77 20.77 20.77 18.70 18.70 16.06 16.01 15.97 15.97 15.97 15.97 15.65 15.65 15.65 15.65 15.65 15.65 # Checking swapping # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.496 0 0.676 0.884 6.780 66.786 51.111 LGA A 352 A 352 0.797 0 0.055 0.059 1.807 90.595 87.048 LGA E 353 E 353 2.256 0 0.023 0.966 3.694 72.976 60.265 LGA E 354 E 354 2.316 0 0.085 0.195 6.017 66.786 47.090 LGA L 355 L 355 1.884 0 0.114 0.160 4.521 72.976 59.226 LGA G 356 G 356 2.042 0 0.032 0.032 2.194 70.952 70.952 LGA N 357 N 357 1.687 0 0.034 0.994 4.829 83.810 70.179 LGA I 358 I 358 1.545 0 0.050 0.135 3.835 75.238 62.679 LGA I 359 I 359 3.239 0 0.034 0.082 5.225 52.024 41.131 LGA V 360 V 360 3.150 0 0.044 0.080 4.398 57.262 49.524 LGA A 361 A 361 0.980 0 0.120 0.124 1.590 81.548 83.333 LGA W 362 W 362 2.257 0 0.217 0.365 4.054 56.190 52.381 LGA N 363 N 363 3.343 0 0.426 0.732 8.087 59.286 38.452 LGA P 364 P 364 3.084 0 0.092 1.288 6.742 49.048 36.871 LGA N 365 N 365 3.489 0 0.160 0.315 5.211 44.524 41.607 LGA L 366 L 366 3.918 0 0.530 1.188 7.509 30.476 51.012 LGA W 367 W 367 7.761 0 0.127 1.023 11.137 7.857 7.823 LGA K 368 K 368 12.848 0 0.511 1.193 19.382 0.000 0.000 LGA K 369 K 369 14.074 0 0.154 0.643 15.659 0.000 0.000 LGA G 370 G 370 15.212 0 0.133 0.133 17.716 0.000 0.000 LGA T 371 T 371 20.008 0 0.632 0.613 21.695 0.000 0.000 LGA N 372 N 372 19.373 0 0.417 0.693 21.193 0.000 0.000 LGA G 373 G 373 14.276 0 0.290 0.290 16.054 0.000 0.000 LGA Y 374 Y 374 15.731 0 0.135 1.501 18.634 0.000 0.000 LGA P 375 P 375 18.546 0 0.194 0.344 20.578 0.000 0.000 LGA I 376 I 376 24.936 0 0.189 1.042 29.106 0.000 0.000 LGA F 377 F 377 31.224 0 0.175 0.665 33.285 0.000 0.000 LGA Q 378 Q 378 37.553 0 0.798 0.920 41.036 0.000 0.000 LGA W 379 W 379 41.963 0 0.655 0.632 43.653 0.000 0.000 LGA S 380 S 380 42.761 0 0.299 0.994 43.304 0.000 0.000 LGA E 381 E 381 43.794 1 0.039 0.632 44.545 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 11.810 11.736 13.100 33.495 29.377 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 16 2.56 53.226 49.363 0.601 LGA_LOCAL RMSD: 2.561 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.704 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.810 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.114718 * X + 0.939685 * Y + -0.322230 * Z + -52.753773 Y_new = 0.045367 * X + 0.319078 * Y + 0.946642 * Z + -56.143723 Z_new = 0.992362 * X + -0.123216 * Y + -0.006027 * Z + 45.978886 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.376594 -1.447119 -1.619672 [DEG: 21.5772 -82.9138 -92.8004 ] ZXZ: -2.813502 1.576823 1.694328 [DEG: -161.2018 90.3453 97.0778 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS345_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS345_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 16 2.56 49.363 11.81 REMARK ---------------------------------------------------------- MOLECULE T0537TS345_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 4.768 13.944 49.375 1.00 0.00 N ATOM 2530 CA SER 351 6.126 14.508 49.125 1.00 0.00 C ATOM 2531 C SER 351 6.567 15.311 50.287 1.00 0.00 C ATOM 2532 O SER 351 7.749 15.638 50.387 1.00 0.00 O ATOM 2533 CB SER 351 6.110 15.568 48.020 1.00 0.00 C ATOM 2534 OG SER 351 5.795 14.936 46.774 1.00 0.00 O ATOM 2535 N ALA 352 5.680 15.534 51.256 1.00 0.00 N ATOM 2536 CA ALA 352 5.933 16.142 52.550 1.00 0.00 C ATOM 2537 C ALA 352 6.540 15.079 53.460 1.00 0.00 C ATOM 2538 O ALA 352 7.574 15.311 54.095 1.00 0.00 O ATOM 2539 CB ALA 352 4.667 16.723 53.140 1.00 0.00 C ATOM 2540 N GLU 353 5.866 13.934 53.570 1.00 0.00 N ATOM 2541 CA GLU 353 6.334 12.856 54.416 1.00 0.00 C ATOM 2542 C GLU 353 7.778 12.389 54.029 1.00 0.00 C ATOM 2543 O GLU 353 8.647 12.196 54.873 1.00 0.00 O ATOM 2544 CB GLU 353 5.434 11.623 54.267 1.00 0.00 C ATOM 2545 CG GLU 353 4.815 11.153 55.556 1.00 0.00 C ATOM 2546 CD GLU 353 3.602 11.967 55.958 1.00 0.00 C ATOM 2547 OE1 GLU 353 2.532 11.809 55.324 1.00 0.00 O ATOM 2548 OE2 GLU 353 3.718 12.767 56.910 1.00 0.00 O ATOM 2549 N GLU 354 8.013 12.242 52.727 1.00 0.00 N ATOM 2550 CA GLU 354 9.325 11.850 52.297 1.00 0.00 C ATOM 2551 C GLU 354 10.421 12.884 52.544 1.00 0.00 C ATOM 2552 O GLU 354 11.590 12.542 52.705 1.00 0.00 O ATOM 2553 CB GLU 354 9.283 11.603 50.785 1.00 0.00 C ATOM 2554 CG GLU 354 8.264 10.541 50.392 1.00 0.00 C ATOM 2555 CD GLU 354 8.133 10.304 48.883 1.00 0.00 C ATOM 2556 OE1 GLU 354 8.451 11.213 48.076 1.00 0.00 O ATOM 2557 OE2 GLU 354 7.675 9.196 48.507 1.00 0.00 O ATOM 2558 N LEU 355 10.023 14.156 52.549 1.00 0.00 N ATOM 2559 CA LEU 355 10.959 15.239 52.828 1.00 0.00 C ATOM 2560 C LEU 355 11.338 15.219 54.321 1.00 0.00 C ATOM 2561 O LEU 355 12.332 15.785 54.771 1.00 0.00 O ATOM 2562 CB LEU 355 10.290 16.596 52.585 1.00 0.00 C ATOM 2563 CG LEU 355 10.055 16.951 51.116 1.00 0.00 C ATOM 2564 CD1 LEU 355 9.117 18.131 51.007 1.00 0.00 C ATOM 2565 CD2 LEU 355 11.379 17.251 50.431 1.00 0.00 C ATOM 2566 N GLY 356 10.474 14.567 55.099 1.00 0.00 N ATOM 2567 CA GLY 356 10.750 14.428 56.535 1.00 0.00 C ATOM 2568 C GLY 356 11.567 13.279 56.834 1.00 0.00 C ATOM 2569 O GLY 356 12.541 13.375 57.588 1.00 0.00 O ATOM 2570 N ASN 357 11.229 12.140 56.229 1.00 0.00 N ATOM 2571 CA ASN 357 12.025 10.850 56.443 1.00 0.00 C ATOM 2572 C ASN 357 13.480 11.115 56.006 1.00 0.00 C ATOM 2573 O ASN 357 14.375 10.708 56.743 1.00 0.00 O ATOM 2574 CB ASN 357 11.403 9.647 55.755 1.00 0.00 C ATOM 2575 CG ASN 357 10.001 9.368 56.244 1.00 0.00 C ATOM 2576 OD1 ASN 357 9.040 9.482 55.487 1.00 0.00 O ATOM 2577 ND2 ASN 357 9.870 9.038 57.525 1.00 0.00 N ATOM 2578 N ILE 358 13.720 11.804 54.888 1.00 0.00 N ATOM 2579 CA ILE 358 14.992 12.104 54.428 1.00 0.00 C ATOM 2580 C ILE 358 15.859 13.010 55.359 1.00 0.00 C ATOM 2581 O ILE 358 16.958 12.715 55.827 1.00 0.00 O ATOM 2582 CB ILE 358 14.856 12.728 53.027 1.00 0.00 C ATOM 2583 CG1 ILE 358 14.130 11.748 52.100 1.00 0.00 C ATOM 2584 CG2 ILE 358 16.222 13.119 52.478 1.00 0.00 C ATOM 2585 CD1 ILE 358 13.648 12.364 50.801 1.00 0.00 C ATOM 2586 N ILE 359 15.272 14.178 55.600 1.00 0.00 N ATOM 2587 CA ILE 359 16.052 15.186 56.381 1.00 0.00 C ATOM 2588 C ILE 359 16.623 14.578 57.672 1.00 0.00 C ATOM 2589 O ILE 359 17.789 14.735 58.025 1.00 0.00 O ATOM 2590 CB ILE 359 15.246 16.447 56.728 1.00 0.00 C ATOM 2591 CG1 ILE 359 14.974 17.253 55.445 1.00 0.00 C ATOM 2592 CG2 ILE 359 16.030 17.320 57.705 1.00 0.00 C ATOM 2593 CD1 ILE 359 13.940 18.338 55.670 1.00 0.00 C ATOM 2594 N VAL 360 15.756 13.838 58.352 1.00 0.00 N ATOM 2595 CA VAL 360 16.140 13.217 59.630 1.00 0.00 C ATOM 2596 C VAL 360 17.227 12.149 59.373 1.00 0.00 C ATOM 2597 O VAL 360 18.254 12.036 60.024 1.00 0.00 O ATOM 2598 CB VAL 360 14.897 12.659 60.376 1.00 0.00 C ATOM 2599 CG1 VAL 360 15.312 11.865 61.612 1.00 0.00 C ATOM 2600 CG2 VAL 360 13.927 13.787 60.751 1.00 0.00 C ATOM 2601 N ALA 361 16.891 11.307 58.395 1.00 0.00 N ATOM 2602 CA ALA 361 17.850 10.193 58.077 1.00 0.00 C ATOM 2603 C ALA 361 19.113 10.808 57.563 1.00 0.00 C ATOM 2604 O ALA 361 20.166 10.253 57.891 1.00 0.00 O ATOM 2605 CB ALA 361 17.259 9.353 56.926 1.00 0.00 C ATOM 2606 N TRP 362 19.086 11.879 56.773 1.00 0.00 N ATOM 2607 CA TRP 362 20.241 12.595 56.384 1.00 0.00 C ATOM 2608 C TRP 362 20.794 13.209 57.683 1.00 0.00 C ATOM 2609 O TRP 362 21.785 13.936 57.649 1.00 0.00 O ATOM 2610 CB TRP 362 19.924 13.903 55.655 1.00 0.00 C ATOM 2611 CG TRP 362 19.111 13.751 54.404 1.00 0.00 C ATOM 2612 CD1 TRP 362 18.784 12.588 53.763 1.00 0.00 C ATOM 2613 CD2 TRP 362 18.525 14.808 53.639 1.00 0.00 C ATOM 2614 NE1 TRP 362 18.026 12.859 52.649 1.00 0.00 N ATOM 2615 CE2 TRP 362 17.854 14.213 52.548 1.00 0.00 C ATOM 2616 CE3 TRP 362 18.506 16.206 53.769 1.00 0.00 C ATOM 2617 CZ2 TRP 362 17.166 14.967 51.591 1.00 0.00 C ATOM 2618 CZ3 TRP 362 17.820 16.955 52.814 1.00 0.00 C ATOM 2619 CH2 TRP 362 17.160 16.330 51.740 1.00 0.00 H ATOM 2620 N ASN 363 20.275 12.739 58.824 1.00 0.00 N ATOM 2621 CA ASN 363 21.113 13.064 60.042 1.00 0.00 C ATOM 2622 C ASN 363 21.690 14.400 59.983 1.00 0.00 C ATOM 2623 O ASN 363 22.526 14.757 60.789 1.00 0.00 O ATOM 2624 CB ASN 363 21.936 11.885 60.574 1.00 0.00 C ATOM 2625 CG ASN 363 21.107 10.956 61.416 1.00 0.00 C ATOM 2626 OD1 ASN 363 20.315 11.402 62.259 1.00 0.00 O ATOM 2627 ND2 ASN 363 21.237 9.661 61.172 1.00 0.00 N ATOM 2628 N PRO 364 21.344 15.144 58.965 1.00 0.00 N ATOM 2629 CA PRO 364 21.938 16.506 58.698 1.00 0.00 C ATOM 2630 C PRO 364 23.520 16.571 58.459 1.00 0.00 C ATOM 2631 O PRO 364 23.957 17.416 57.681 1.00 0.00 O ATOM 2632 CB PRO 364 20.613 17.175 59.037 1.00 0.00 C ATOM 2633 CG PRO 364 20.002 17.385 57.680 1.00 0.00 C ATOM 2634 CD PRO 364 21.173 17.877 56.852 1.00 0.00 C ATOM 2635 N ASN 365 24.201 15.511 58.889 1.00 0.00 N ATOM 2636 CA ASN 365 25.341 14.875 58.278 1.00 0.00 C ATOM 2637 C ASN 365 25.685 15.557 56.965 1.00 0.00 C ATOM 2638 O ASN 365 26.848 15.834 56.702 1.00 0.00 O ATOM 2639 CB ASN 365 24.886 13.428 58.082 1.00 0.00 C ATOM 2640 CG ASN 365 25.324 12.525 59.214 1.00 0.00 C ATOM 2641 OD1 ASN 365 26.384 12.728 59.805 1.00 0.00 O ATOM 2642 ND2 ASN 365 24.518 11.508 59.510 1.00 0.00 N ATOM 2643 N LEU 366 24.663 15.819 56.149 1.00 0.00 N ATOM 2644 CA LEU 366 24.908 16.497 54.874 1.00 0.00 C ATOM 2645 C LEU 366 25.085 15.640 53.782 1.00 0.00 C ATOM 2646 O LEU 366 26.192 15.428 53.290 1.00 0.00 O ATOM 2647 CB LEU 366 25.672 17.735 54.386 1.00 0.00 C ATOM 2648 CG LEU 366 25.087 19.091 54.786 1.00 0.00 C ATOM 2649 CD1 LEU 366 25.066 19.279 56.291 1.00 0.00 C ATOM 2650 CD2 LEU 366 25.877 20.206 54.138 1.00 0.00 C ATOM 2651 N TRP 367 23.987 15.019 53.373 1.00 0.00 N ATOM 2652 CA TRP 367 24.192 13.908 52.189 1.00 0.00 C ATOM 2653 C TRP 367 23.360 14.434 51.029 1.00 0.00 C ATOM 2654 O TRP 367 22.269 14.841 51.393 1.00 0.00 O ATOM 2655 CB TRP 367 23.940 12.414 52.513 1.00 0.00 C ATOM 2656 CG TRP 367 24.685 11.854 53.682 1.00 0.00 C ATOM 2657 CD1 TRP 367 25.997 12.103 54.010 1.00 0.00 C ATOM 2658 CD2 TRP 367 24.208 10.939 54.698 1.00 0.00 C ATOM 2659 NE1 TRP 367 26.346 11.480 55.167 1.00 0.00 N ATOM 2660 CE2 TRP 367 25.264 10.704 55.575 1.00 0.00 C ATOM 2661 CE3 TRP 367 22.982 10.290 54.887 1.00 0.00 C ATOM 2662 CZ2 TRP 367 25.170 9.850 56.673 1.00 0.00 C ATOM 2663 CZ3 TRP 367 22.873 9.440 55.987 1.00 0.00 C ATOM 2664 CH2 TRP 367 23.948 9.247 56.847 1.00 0.00 H ATOM 2665 N LYS 368 23.698 14.257 49.749 1.00 0.00 N ATOM 2666 CA LYS 368 22.736 14.697 48.770 1.00 0.00 C ATOM 2667 C LYS 368 21.500 13.948 48.285 1.00 0.00 C ATOM 2668 O LYS 368 21.376 13.744 47.072 1.00 0.00 O ATOM 2669 CB LYS 368 23.557 15.131 47.553 1.00 0.00 C ATOM 2670 CG LYS 368 22.764 16.000 46.582 1.00 0.00 C ATOM 2671 CD LYS 368 22.752 15.429 45.177 1.00 0.00 C ATOM 2672 CE LYS 368 21.843 16.238 44.257 1.00 0.00 C ATOM 2673 NZ LYS 368 20.415 16.177 44.683 1.00 0.00 N ATOM 2674 N LYS 369 20.670 13.422 49.201 1.00 0.00 N ATOM 2675 CA LYS 369 19.656 12.481 48.569 1.00 0.00 C ATOM 2676 C LYS 369 18.284 13.077 48.105 1.00 0.00 C ATOM 2677 O LYS 369 17.691 13.550 49.080 1.00 0.00 O ATOM 2678 CB LYS 369 19.163 11.663 49.771 1.00 0.00 C ATOM 2679 CG LYS 369 20.281 10.906 50.518 1.00 0.00 C ATOM 2680 CD LYS 369 20.860 9.785 49.683 1.00 0.00 C ATOM 2681 CE LYS 369 22.179 9.252 50.240 1.00 0.00 C ATOM 2682 NZ LYS 369 22.104 8.841 51.643 1.00 0.00 N ATOM 2683 N GLY 370 17.757 13.082 46.886 1.00 0.00 N ATOM 2684 CA GLY 370 16.290 13.430 47.081 1.00 0.00 C ATOM 2685 C GLY 370 15.439 12.858 46.089 1.00 0.00 C ATOM 2686 O GLY 370 16.147 12.411 45.189 1.00 0.00 O ATOM 2687 N THR 371 14.113 12.958 45.964 1.00 0.00 N ATOM 2688 CA THR 371 13.517 12.358 44.718 1.00 0.00 C ATOM 2689 C THR 371 13.238 13.435 43.574 1.00 0.00 C ATOM 2690 O THR 371 12.993 14.611 43.848 1.00 0.00 O ATOM 2691 CB THR 371 12.099 12.114 45.276 1.00 0.00 C ATOM 2692 OG1 THR 371 11.613 13.367 45.790 1.00 0.00 O ATOM 2693 CG2 THR 371 12.131 11.067 46.375 1.00 0.00 C ATOM 2694 N ASN 372 13.213 12.937 42.345 1.00 0.00 N ATOM 2695 CA ASN 372 12.949 13.782 41.241 1.00 0.00 C ATOM 2696 C ASN 372 11.373 13.785 41.457 1.00 0.00 C ATOM 2697 O ASN 372 10.565 13.094 40.864 1.00 0.00 O ATOM 2698 CB ASN 372 12.882 13.002 39.924 1.00 0.00 C ATOM 2699 CG ASN 372 11.789 11.935 39.916 1.00 0.00 C ATOM 2700 OD1 ASN 372 11.687 11.117 40.833 1.00 0.00 O ATOM 2701 ND2 ASN 372 10.971 11.938 38.866 1.00 0.00 N ATOM 2702 N GLY 373 11.041 14.550 42.484 1.00 0.00 N ATOM 2703 CA GLY 373 9.700 14.810 42.922 1.00 0.00 C ATOM 2704 C GLY 373 8.561 15.178 42.038 1.00 0.00 C ATOM 2705 O GLY 373 7.705 15.994 42.371 1.00 0.00 O ATOM 2706 N TYR 374 8.548 14.549 40.872 1.00 0.00 N ATOM 2707 CA TYR 374 7.448 14.863 39.864 1.00 0.00 C ATOM 2708 C TYR 374 5.959 14.923 40.273 1.00 0.00 C ATOM 2709 O TYR 374 5.468 13.824 40.529 1.00 0.00 O ATOM 2710 CB TYR 374 7.496 13.875 38.709 1.00 0.00 C ATOM 2711 CG TYR 374 6.219 13.730 37.904 1.00 0.00 C ATOM 2712 CD1 TYR 374 5.918 14.610 36.880 1.00 0.00 C ATOM 2713 CD2 TYR 374 5.317 12.708 38.183 1.00 0.00 C ATOM 2714 CE1 TYR 374 4.751 14.483 36.150 1.00 0.00 C ATOM 2715 CE2 TYR 374 4.147 12.574 37.455 1.00 0.00 C ATOM 2716 CZ TYR 374 3.877 13.467 36.438 1.00 0.00 C ATOM 2717 OH TYR 374 2.707 13.331 35.714 1.00 0.00 H ATOM 2718 N PRO 375 5.250 16.053 40.348 1.00 0.00 N ATOM 2719 CA PRO 375 3.812 15.464 40.814 1.00 0.00 C ATOM 2720 C PRO 375 2.893 15.459 39.660 1.00 0.00 C ATOM 2721 O PRO 375 3.382 15.651 38.508 1.00 0.00 O ATOM 2722 CB PRO 375 3.611 16.467 41.943 1.00 0.00 C ATOM 2723 CG PRO 375 4.523 17.640 41.527 1.00 0.00 C ATOM 2724 CD PRO 375 5.598 17.070 40.595 1.00 0.00 C ATOM 2725 N ILE 376 1.581 15.266 39.849 1.00 0.00 N ATOM 2726 CA ILE 376 0.553 15.262 38.888 1.00 0.00 C ATOM 2727 C ILE 376 -0.945 15.156 39.367 1.00 0.00 C ATOM 2728 O ILE 376 -1.291 14.588 40.414 1.00 0.00 O ATOM 2729 CB ILE 376 0.229 14.036 37.991 1.00 0.00 C ATOM 2730 CG1 ILE 376 1.488 13.748 37.143 1.00 0.00 C ATOM 2731 CG2 ILE 376 -0.963 14.329 37.104 1.00 0.00 C ATOM 2732 CD1 ILE 376 1.441 12.319 36.605 1.00 0.00 C ATOM 2733 N PHE 377 -1.795 15.803 38.565 1.00 0.00 N ATOM 2734 CA PHE 377 -3.201 15.877 38.734 1.00 0.00 C ATOM 2735 C PHE 377 -3.723 15.891 37.332 1.00 0.00 C ATOM 2736 O PHE 377 -3.443 16.946 36.744 1.00 0.00 O ATOM 2737 CB PHE 377 -3.960 17.016 39.418 1.00 0.00 C ATOM 2738 CG PHE 377 -3.939 16.949 40.914 1.00 0.00 C ATOM 2739 CD1 PHE 377 -2.874 17.476 41.636 1.00 0.00 C ATOM 2740 CD2 PHE 377 -4.985 16.346 41.603 1.00 0.00 C ATOM 2741 CE1 PHE 377 -2.854 17.403 43.024 1.00 0.00 C ATOM 2742 CE2 PHE 377 -4.975 16.269 42.989 1.00 0.00 C ATOM 2743 CZ PHE 377 -3.906 16.799 43.703 1.00 0.00 C ATOM 2744 N GLN 378 -4.480 14.925 36.798 1.00 0.00 N ATOM 2745 CA GLN 378 -5.048 15.136 35.500 1.00 0.00 C ATOM 2746 C GLN 378 -6.298 14.741 36.024 1.00 0.00 C ATOM 2747 O GLN 378 -6.339 14.094 37.067 1.00 0.00 O ATOM 2748 CB GLN 378 -4.143 14.422 34.488 1.00 0.00 C ATOM 2749 CG GLN 378 -4.544 14.717 33.053 1.00 0.00 C ATOM 2750 CD GLN 378 -3.891 13.757 32.075 1.00 0.00 C ATOM 2751 OE1 GLN 378 -2.956 13.044 32.450 1.00 0.00 O ATOM 2752 NE2 GLN 378 -4.382 13.743 30.835 1.00 0.00 N ATOM 2753 N TRP 379 -7.394 15.204 35.429 1.00 0.00 N ATOM 2754 CA TRP 379 -8.810 14.829 35.957 1.00 0.00 C ATOM 2755 C TRP 379 -9.870 15.168 35.012 1.00 0.00 C ATOM 2756 O TRP 379 -9.774 16.233 34.414 1.00 0.00 O ATOM 2757 CB TRP 379 -9.164 15.590 37.267 1.00 0.00 C ATOM 2758 CG TRP 379 -9.090 17.069 37.062 1.00 0.00 C ATOM 2759 CD1 TRP 379 -7.948 17.841 37.065 1.00 0.00 C ATOM 2760 CD2 TRP 379 -10.176 17.959 36.792 1.00 0.00 C ATOM 2761 NE1 TRP 379 -8.287 19.153 36.827 1.00 0.00 N ATOM 2762 CE2 TRP 379 -9.640 19.237 36.659 1.00 0.00 C ATOM 2763 CE3 TRP 379 -11.567 17.765 36.681 1.00 0.00 C ATOM 2764 CZ2 TRP 379 -10.438 20.364 36.394 1.00 0.00 C ATOM 2765 CZ3 TRP 379 -12.354 18.885 36.434 1.00 0.00 C ATOM 2766 CH2 TRP 379 -11.780 20.138 36.283 1.00 0.00 H ATOM 2767 N SER 380 -10.881 14.315 34.787 1.00 0.00 N ATOM 2768 CA SER 380 -11.929 14.611 33.800 1.00 0.00 C ATOM 2769 C SER 380 -11.707 15.620 32.698 1.00 0.00 C ATOM 2770 O SER 380 -12.034 16.792 32.827 1.00 0.00 O ATOM 2771 CB SER 380 -12.712 15.880 34.179 1.00 0.00 C ATOM 2772 OG SER 380 -14.003 15.892 33.583 1.00 0.00 O ATOM 2773 N GLU 381 -11.181 15.141 31.576 1.00 0.00 N ATOM 2774 CA GLU 381 -10.656 16.054 30.523 1.00 0.00 C ATOM 2775 C GLU 381 -11.344 15.639 29.114 1.00 0.00 C ATOM 2776 O GLU 381 -11.477 14.446 28.873 1.00 0.00 O ATOM 2777 CB GLU 381 -9.190 15.918 30.087 1.00 0.00 C ATOM 2778 CG GLU 381 -8.872 14.606 29.380 1.00 0.00 C ATOM 2779 CD GLU 381 -7.415 14.198 29.398 1.00 0.00 C ATOM 2780 OE1 GLU 381 -6.542 14.908 29.921 1.00 0.00 O ATOM 2781 OE2 GLU 381 -7.103 13.114 28.854 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 70.41 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 16.43 95.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 76.01 44.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 29.21 70.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.93 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 74.37 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 21.09 87.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 76.90 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 27.63 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.69 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 62.58 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 64.39 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 63.29 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 42.54 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.64 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 51.08 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 61.38 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 50.64 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 121.16 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 121.16 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 121.16 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.81 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.81 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3810 CRMSCA SECONDARY STRUCTURE . . 6.12 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.40 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.07 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.93 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.34 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.44 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.52 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 14.68 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 14.53 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.17 41 100.0 41 CRMSSC SURFACE . . . . . . . . 14.98 119 99.2 120 CRMSSC BURIED . . . . . . . . 10.34 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.32 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.27 85 100.0 85 CRMSALL SURFACE . . . . . . . . 13.79 223 99.6 224 CRMSALL BURIED . . . . . . . . 9.08 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.767 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.818 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 11.360 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.682 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.839 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.904 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 11.332 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 8.078 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.774 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 13.599 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 9.758 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 14.067 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 10.287 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.230 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 7.599 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 12.707 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 8.685 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 4 14 31 31 DISTCA CA (P) 0.00 0.00 3.23 12.90 45.16 31 DISTCA CA (RMS) 0.00 0.00 2.46 4.00 6.93 DISTCA ALL (N) 0 1 5 19 86 253 254 DISTALL ALL (P) 0.00 0.39 1.97 7.48 33.86 254 DISTALL ALL (RMS) 0.00 1.68 2.36 3.57 7.29 DISTALL END of the results output