####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS314_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS314_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 352 - 368 5.00 11.95 LONGEST_CONTINUOUS_SEGMENT: 17 353 - 369 4.93 12.26 LCS_AVERAGE: 50.36 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 358 - 364 1.12 19.09 LCS_AVERAGE: 17.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.43 26.93 LCS_AVERAGE: 15.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 14 5 6 6 6 6 6 6 7 8 10 11 12 13 17 18 19 20 20 21 22 LCS_GDT A 352 A 352 6 6 17 5 6 6 6 6 6 6 6 8 10 11 12 12 17 18 19 20 20 21 22 LCS_GDT E 353 E 353 6 6 17 5 6 6 6 6 6 7 8 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT E 354 E 354 6 6 17 5 6 6 6 6 6 7 8 10 10 13 15 16 17 18 19 20 20 21 22 LCS_GDT L 355 L 355 6 6 17 5 6 6 6 6 6 7 8 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT G 356 G 356 6 6 17 4 6 6 6 6 6 7 8 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT N 357 N 357 3 5 17 3 3 3 3 5 6 7 8 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT I 358 I 358 6 7 17 5 5 6 7 7 7 8 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT I 359 I 359 6 7 17 5 5 6 7 7 7 8 9 10 10 12 15 16 17 18 19 20 20 21 22 LCS_GDT V 360 V 360 6 7 17 5 5 6 7 7 7 8 9 10 10 13 15 16 17 18 19 20 20 21 22 LCS_GDT A 361 A 361 6 7 17 5 5 6 7 7 7 8 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT W 362 W 362 6 7 17 5 5 6 7 7 7 8 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT N 363 N 363 6 7 17 4 5 6 7 7 7 7 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT P 364 P 364 5 7 17 4 5 5 7 7 7 8 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT N 365 N 365 5 6 17 4 5 5 6 6 7 8 9 10 11 13 14 16 16 17 18 20 20 20 22 LCS_GDT L 366 L 366 5 6 17 4 5 5 6 7 7 8 9 10 11 13 14 16 16 18 19 20 20 21 22 LCS_GDT W 367 W 367 5 6 17 0 5 5 6 6 7 7 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT K 368 K 368 3 6 17 1 3 5 6 6 7 7 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT K 369 K 369 3 3 17 1 3 5 5 5 6 6 9 10 11 13 15 16 17 18 19 20 20 21 22 LCS_GDT G 370 G 370 4 4 15 4 4 5 5 5 6 7 9 10 11 13 14 15 17 18 19 20 20 21 22 LCS_GDT T 371 T 371 4 4 15 4 4 4 4 4 4 5 7 10 11 13 14 14 17 18 19 20 20 21 22 LCS_GDT N 372 N 372 4 4 15 4 4 4 4 4 5 7 8 9 11 13 14 14 16 18 19 20 20 21 22 LCS_GDT G 373 G 373 4 4 15 4 4 5 5 5 6 6 9 10 11 13 14 14 15 16 17 20 20 21 22 LCS_GDT Y 374 Y 374 3 5 15 3 3 5 5 6 7 7 9 10 11 13 14 14 15 15 16 18 19 20 21 LCS_GDT P 375 P 375 3 5 15 3 3 3 4 5 6 7 8 8 9 10 10 11 13 15 16 18 19 20 21 LCS_GDT I 376 I 376 4 5 14 3 3 4 4 5 6 7 8 8 9 10 10 11 13 15 16 18 19 20 22 LCS_GDT F 377 F 377 4 5 12 3 3 4 4 5 6 7 8 8 9 10 10 11 11 14 15 18 19 20 21 LCS_GDT Q 378 Q 378 4 5 12 3 3 4 4 5 6 7 8 8 9 10 10 11 11 12 14 18 19 20 21 LCS_GDT W 379 W 379 4 5 12 3 3 4 4 4 6 7 8 8 9 10 10 11 11 12 14 18 19 20 21 LCS_GDT S 380 S 380 3 4 12 3 3 3 3 4 4 5 7 7 7 9 10 11 11 12 14 18 19 20 21 LCS_GDT E 381 E 381 3 4 12 3 3 3 3 4 4 5 6 7 7 7 9 10 11 12 13 18 19 20 21 LCS_AVERAGE LCS_A: 27.75 ( 15.09 17.79 50.36 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 7 7 7 8 9 10 11 13 15 16 17 18 19 20 20 21 22 GDT PERCENT_AT 16.13 19.35 19.35 22.58 22.58 22.58 25.81 29.03 32.26 35.48 41.94 48.39 51.61 54.84 58.06 61.29 64.52 64.52 67.74 70.97 GDT RMS_LOCAL 0.24 0.43 0.43 1.12 1.12 1.12 1.84 2.30 2.69 3.38 4.24 4.54 4.71 5.03 5.23 5.42 5.65 5.65 5.98 6.27 GDT RMS_ALL_AT 27.37 26.93 26.93 19.09 19.09 19.09 15.59 16.26 15.60 15.71 11.54 12.16 11.86 11.24 11.15 10.89 10.99 10.99 12.06 11.73 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 20.008 0 0.655 0.922 21.997 0.000 0.000 LGA A 352 A 352 15.654 0 0.043 0.048 17.191 0.000 0.000 LGA E 353 E 353 17.927 0 0.021 1.067 23.408 0.000 0.000 LGA E 354 E 354 18.268 0 0.058 1.001 25.489 0.000 0.000 LGA L 355 L 355 14.923 0 0.040 1.391 18.268 0.000 0.000 LGA G 356 G 356 13.992 0 0.384 0.384 14.143 0.000 0.000 LGA N 357 N 357 8.941 0 0.574 1.366 12.247 9.286 4.821 LGA I 358 I 358 2.113 0 0.592 1.562 6.472 64.762 51.845 LGA I 359 I 359 0.650 0 0.066 1.574 3.621 88.333 77.143 LGA V 360 V 360 1.478 0 0.060 0.132 3.263 81.548 71.156 LGA A 361 A 361 0.698 0 0.155 0.152 2.806 80.119 80.381 LGA W 362 W 362 2.077 0 0.045 1.663 10.933 61.667 29.966 LGA N 363 N 363 4.172 0 0.577 1.262 8.635 56.071 32.024 LGA P 364 P 364 1.105 0 0.054 0.209 4.457 75.357 64.966 LGA N 365 N 365 3.482 0 0.165 0.194 6.721 52.500 37.202 LGA L 366 L 366 2.192 0 0.063 1.097 4.785 52.738 65.476 LGA W 367 W 367 5.610 0 0.553 1.377 16.285 21.190 7.517 LGA K 368 K 368 10.808 0 0.602 1.078 18.165 0.714 0.317 LGA K 369 K 369 16.365 0 0.603 0.809 20.028 0.000 0.000 LGA G 370 G 370 16.949 0 0.622 0.622 20.382 0.000 0.000 LGA T 371 T 371 20.904 0 0.110 0.157 25.114 0.000 0.000 LGA N 372 N 372 27.086 0 0.285 1.051 29.037 0.000 0.000 LGA G 373 G 373 25.643 0 0.109 0.109 25.864 0.000 0.000 LGA Y 374 Y 374 23.612 0 0.596 1.139 23.887 0.000 0.000 LGA P 375 P 375 23.776 0 0.662 0.644 25.200 0.000 0.000 LGA I 376 I 376 21.483 0 0.313 0.452 24.505 0.000 0.000 LGA F 377 F 377 17.691 0 0.025 0.791 20.191 0.000 0.000 LGA Q 378 Q 378 19.705 0 0.671 1.474 21.265 0.000 0.000 LGA W 379 W 379 18.469 0 0.713 1.229 19.922 0.000 0.000 LGA S 380 S 380 22.313 0 0.044 0.667 24.699 0.000 0.000 LGA E 381 E 381 26.335 0 0.148 0.567 30.452 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 9.309 9.220 9.897 20.783 16.865 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.30 33.065 28.430 0.376 LGA_LOCAL RMSD: 2.296 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.260 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.309 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.087716 * X + -0.595364 * Y + 0.798653 * Z + 51.500374 Y_new = -0.619130 * X + 0.660664 * Y + 0.424500 * Z + 20.146988 Z_new = -0.780374 * X + -0.457235 * Y + -0.426559 * Z + 90.250275 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.711536 0.895264 -2.321499 [DEG: -98.0638 51.2948 -133.0121 ] ZXZ: 2.059340 2.011481 -2.100797 [DEG: 117.9915 115.2494 -120.3668 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS314_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS314_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.30 28.430 9.31 REMARK ---------------------------------------------------------- MOLECULE T0537TS314_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1bw9:A ATOM 2529 N SER 351 24.384 13.235 50.207 1.00 0.50 N ATOM 2530 CA SER 351 24.620 12.060 50.983 1.00 0.50 C ATOM 2531 CB SER 351 25.163 12.350 52.373 1.00 0.50 C ATOM 2532 OG SER 351 26.432 12.982 52.283 1.00 0.50 O ATOM 2533 C SER 351 23.390 11.216 51.061 1.00 0.50 C ATOM 2534 O SER 351 23.476 10.008 51.272 1.00 0.50 O ATOM 2535 N ALA 352 22.202 11.821 50.890 1.00 0.50 N ATOM 2536 CA ALA 352 21.012 11.029 50.951 1.00 0.50 C ATOM 2537 CB ALA 352 19.732 11.856 50.741 1.00 0.50 C ATOM 2538 C ALA 352 21.087 10.022 49.847 1.00 0.50 C ATOM 2539 O ALA 352 20.750 8.855 50.036 1.00 0.50 O ATOM 2540 N GLU 353 21.532 10.452 48.650 1.00 0.50 N ATOM 2541 CA GLU 353 21.601 9.539 47.545 1.00 0.50 C ATOM 2542 CB GLU 353 21.926 10.213 46.202 1.00 0.50 C ATOM 2543 CG GLU 353 20.774 11.047 45.640 1.00 0.50 C ATOM 2544 CD GLU 353 21.137 11.434 44.213 1.00 0.50 C ATOM 2545 OE1 GLU 353 22.202 12.081 44.023 1.00 0.50 O ATOM 2546 OE2 GLU 353 20.356 11.078 43.291 1.00 0.50 O ATOM 2547 C GLU 353 22.648 8.489 47.775 1.00 0.50 C ATOM 2548 O GLU 353 22.409 7.309 47.526 1.00 0.50 O ATOM 2549 N GLU 354 23.846 8.886 48.250 1.00 0.50 N ATOM 2550 CA GLU 354 24.914 7.936 48.415 1.00 0.50 C ATOM 2551 CB GLU 354 26.214 8.615 48.872 1.00 0.50 C ATOM 2552 CG GLU 354 27.383 7.648 49.065 1.00 0.50 C ATOM 2553 CD GLU 354 28.586 8.463 49.519 1.00 0.50 C ATOM 2554 OE1 GLU 354 28.611 9.693 49.234 1.00 0.50 O ATOM 2555 OE2 GLU 354 29.490 7.872 50.165 1.00 0.50 O ATOM 2556 C GLU 354 24.556 6.932 49.468 1.00 0.50 C ATOM 2557 O GLU 354 24.640 5.724 49.245 1.00 0.50 O ATOM 2558 N LEU 355 24.138 7.426 50.646 1.00 0.50 N ATOM 2559 CA LEU 355 23.796 6.604 51.771 1.00 0.50 C ATOM 2560 CB LEU 355 23.558 7.422 53.053 1.00 0.50 C ATOM 2561 CG LEU 355 23.193 6.563 54.278 1.00 0.50 C ATOM 2562 CD1 LEU 355 24.341 5.615 54.659 1.00 0.50 C ATOM 2563 CD2 LEU 355 22.734 7.439 55.454 1.00 0.50 C ATOM 2564 C LEU 355 22.547 5.848 51.468 1.00 0.50 C ATOM 2565 O LEU 355 22.396 4.696 51.870 1.00 0.50 O ATOM 2566 N GLY 356 21.605 6.479 50.738 1.00 0.50 N ATOM 2567 CA GLY 356 20.371 5.813 50.453 1.00 0.50 C ATOM 2568 C GLY 356 19.466 5.991 51.628 1.00 0.50 C ATOM 2569 O GLY 356 18.678 5.106 51.958 1.00 0.50 O ATOM 2570 N ASN 357 19.570 7.152 52.304 1.00 0.50 N ATOM 2571 CA ASN 357 18.741 7.414 53.441 1.00 0.50 C ATOM 2572 CB ASN 357 19.532 7.735 54.721 1.00 0.50 C ATOM 2573 CG ASN 357 20.324 9.011 54.482 1.00 0.50 C ATOM 2574 OD1 ASN 357 20.653 9.353 53.348 1.00 0.50 O ATOM 2575 ND2 ASN 357 20.648 9.736 55.587 1.00 0.50 N ATOM 2576 C ASN 357 17.882 8.598 53.130 1.00 0.50 C ATOM 2577 O ASN 357 18.039 9.255 52.102 1.00 0.50 O ATOM 2578 N ILE 358 16.914 8.867 54.024 1.00 0.50 N ATOM 2579 CA ILE 358 15.998 9.961 53.893 1.00 0.50 C ATOM 2580 CB ILE 358 14.897 9.938 54.911 1.00 0.50 C ATOM 2581 CG2 ILE 358 14.076 8.656 54.693 1.00 0.50 C ATOM 2582 CG1 ILE 358 15.471 10.071 56.330 1.00 0.50 C ATOM 2583 CD1 ILE 358 14.410 10.342 57.395 1.00 0.50 C ATOM 2584 C ILE 358 16.761 11.235 54.058 1.00 0.50 C ATOM 2585 O ILE 358 17.816 11.272 54.688 1.00 0.50 O ATOM 2586 N ILE 359 16.249 12.320 53.450 1.00 0.50 N ATOM 2587 CA ILE 359 16.918 13.584 53.521 1.00 0.50 C ATOM 2588 CB ILE 359 16.203 14.664 52.753 1.00 0.50 C ATOM 2589 CG2 ILE 359 16.176 14.228 51.279 1.00 0.50 C ATOM 2590 CG1 ILE 359 14.809 14.967 53.332 1.00 0.50 C ATOM 2591 CD1 ILE 359 14.811 15.932 54.519 1.00 0.50 C ATOM 2592 C ILE 359 17.009 13.954 54.962 1.00 0.50 C ATOM 2593 O ILE 359 18.019 14.491 55.414 1.00 0.50 O ATOM 2594 N VAL 360 15.948 13.665 55.733 1.00 0.50 N ATOM 2595 CA VAL 360 15.983 14.001 57.120 1.00 0.50 C ATOM 2596 CB VAL 360 14.728 13.617 57.847 1.00 0.50 C ATOM 2597 CG1 VAL 360 14.908 13.950 59.337 1.00 0.50 C ATOM 2598 CG2 VAL 360 13.541 14.340 57.187 1.00 0.50 C ATOM 2599 C VAL 360 17.112 13.244 57.729 1.00 0.50 C ATOM 2600 O VAL 360 17.871 13.792 58.511 1.00 0.50 O ATOM 2601 N ALA 361 17.290 11.959 57.390 1.00 0.50 N ATOM 2602 CA ALA 361 18.359 11.248 58.029 1.00 0.50 C ATOM 2603 CB ALA 361 18.434 9.774 57.599 1.00 0.50 C ATOM 2604 C ALA 361 19.661 11.888 57.669 1.00 0.50 C ATOM 2605 O ALA 361 20.513 12.104 58.529 1.00 0.50 O ATOM 2606 N TRP 362 19.853 12.242 56.384 1.00 0.50 N ATOM 2607 CA TRP 362 21.143 12.766 56.063 1.00 0.50 C ATOM 2608 CB TRP 362 21.496 12.960 54.589 1.00 0.50 C ATOM 2609 CG TRP 362 22.897 13.519 54.577 1.00 0.50 C ATOM 2610 CD2 TRP 362 24.033 12.767 55.029 1.00 0.50 C ATOM 2611 CD1 TRP 362 23.346 14.779 54.315 1.00 0.50 C ATOM 2612 NE1 TRP 362 24.695 14.861 54.574 1.00 0.50 N ATOM 2613 CE2 TRP 362 25.131 13.631 55.016 1.00 0.50 C ATOM 2614 CE3 TRP 362 24.155 11.465 55.421 1.00 0.50 C ATOM 2615 CZ2 TRP 362 26.372 13.199 55.391 1.00 0.50 C ATOM 2616 CZ3 TRP 362 25.408 11.033 55.798 1.00 0.50 C ATOM 2617 CH2 TRP 362 26.492 11.884 55.785 1.00 0.50 H ATOM 2618 C TRP 362 21.366 14.082 56.744 1.00 0.50 C ATOM 2619 O TRP 362 22.494 14.390 57.125 1.00 0.50 O ATOM 2620 N ASN 363 20.315 14.912 56.912 1.00 0.50 N ATOM 2621 CA ASN 363 20.546 16.208 57.490 1.00 0.50 C ATOM 2622 CB ASN 363 19.268 17.064 57.631 1.00 0.50 C ATOM 2623 CG ASN 363 18.841 17.594 56.271 1.00 0.50 C ATOM 2624 OD1 ASN 363 17.991 17.021 55.593 1.00 0.50 O ATOM 2625 ND2 ASN 363 19.438 18.746 55.865 1.00 0.50 N ATOM 2626 C ASN 363 21.184 16.064 58.850 1.00 0.50 C ATOM 2627 O ASN 363 22.200 16.714 59.090 1.00 0.50 O ATOM 2628 N PRO 364 20.684 15.275 59.770 1.00 0.50 N ATOM 2629 CA PRO 364 21.473 15.119 60.953 1.00 0.50 C ATOM 2630 CD PRO 364 19.304 15.469 60.185 1.00 0.50 C ATOM 2631 CB PRO 364 20.574 14.450 61.984 1.00 0.50 C ATOM 2632 CG PRO 364 19.219 15.100 61.677 1.00 0.50 C ATOM 2633 C PRO 364 22.806 14.491 60.741 1.00 0.50 C ATOM 2634 O PRO 364 23.691 14.718 61.562 1.00 0.50 O ATOM 2635 N ASN 365 22.991 13.693 59.680 1.00 0.50 N ATOM 2636 CA ASN 365 24.304 13.158 59.488 1.00 0.50 C ATOM 2637 CB ASN 365 24.383 12.184 58.306 1.00 0.50 C ATOM 2638 CG ASN 365 23.670 10.905 58.717 1.00 0.50 C ATOM 2639 OD1 ASN 365 23.859 10.407 59.826 1.00 0.50 O ATOM 2640 ND2 ASN 365 22.826 10.354 57.803 1.00 0.50 N ATOM 2641 C ASN 365 25.223 14.311 59.213 1.00 0.50 C ATOM 2642 O ASN 365 26.330 14.377 59.744 1.00 0.50 O ATOM 2643 N LEU 366 24.767 15.260 58.375 1.00 0.50 N ATOM 2644 CA LEU 366 25.540 16.419 58.022 1.00 0.50 C ATOM 2645 CB LEU 366 24.832 17.262 56.939 1.00 0.50 C ATOM 2646 CG LEU 366 25.637 18.440 56.348 1.00 0.50 C ATOM 2647 CD1 LEU 366 24.844 19.112 55.219 1.00 0.50 C ATOM 2648 CD2 LEU 366 26.066 19.467 57.406 1.00 0.50 C ATOM 2649 C LEU 366 25.704 17.223 59.269 1.00 0.50 C ATOM 2650 O LEU 366 26.757 17.801 59.530 1.00 0.50 O ATOM 2651 N TRP 367 24.639 17.250 60.084 1.00 0.50 N ATOM 2652 CA TRP 367 24.629 17.954 61.324 1.00 0.50 C ATOM 2653 CB TRP 367 23.315 17.659 62.061 1.00 0.50 C ATOM 2654 CG TRP 367 23.228 18.127 63.484 1.00 0.50 C ATOM 2655 CD2 TRP 367 23.718 17.371 64.601 1.00 0.50 C ATOM 2656 CD1 TRP 367 22.683 19.263 63.995 1.00 0.50 C ATOM 2657 NE1 TRP 367 22.779 19.255 65.365 1.00 0.50 N ATOM 2658 CE2 TRP 367 23.422 18.099 65.753 1.00 0.50 C ATOM 2659 CE3 TRP 367 24.356 16.166 64.660 1.00 0.50 C ATOM 2660 CZ2 TRP 367 23.766 17.631 66.989 1.00 0.50 C ATOM 2661 CZ3 TRP 367 24.705 15.698 65.908 1.00 0.50 C ATOM 2662 CH2 TRP 367 24.415 16.417 67.050 1.00 0.50 H ATOM 2663 C TRP 367 25.753 17.413 62.150 1.00 0.50 C ATOM 2664 O TRP 367 26.565 18.167 62.675 1.00 0.50 O ATOM 2665 N LYS 368 25.866 16.081 62.265 1.00 0.50 N ATOM 2666 CA LYS 368 26.906 15.554 63.100 1.00 0.50 C ATOM 2667 CB LYS 368 26.855 14.023 63.256 1.00 0.50 C ATOM 2668 CG LYS 368 27.711 13.502 64.417 1.00 0.50 C ATOM 2669 CD LYS 368 29.215 13.727 64.248 1.00 0.50 C ATOM 2670 CE LYS 368 30.008 13.554 65.547 1.00 0.50 C ATOM 2671 NZ LYS 368 29.711 12.238 66.156 1.00 0.50 N ATOM 2672 C LYS 368 28.242 15.924 62.528 1.00 0.50 C ATOM 2673 O LYS 368 29.160 16.285 63.260 1.00 0.50 O ATOM 2674 N LYS 369 28.397 15.865 61.196 1.00 0.50 N ATOM 2675 CA LYS 369 29.687 16.155 60.639 1.00 0.50 C ATOM 2676 CB LYS 369 29.722 16.032 59.106 1.00 0.50 C ATOM 2677 CG LYS 369 29.505 14.602 58.610 1.00 0.50 C ATOM 2678 CD LYS 369 29.278 14.504 57.100 1.00 0.50 C ATOM 2679 CE LYS 369 29.066 13.073 56.602 1.00 0.50 C ATOM 2680 NZ LYS 369 30.249 12.240 56.917 1.00 0.50 N ATOM 2681 C LYS 369 30.050 17.561 60.983 1.00 0.50 C ATOM 2682 O LYS 369 31.181 17.850 61.372 1.00 0.50 O ATOM 2683 N GLY 370 29.075 18.475 60.866 1.00 0.50 N ATOM 2684 CA GLY 370 29.310 19.859 61.134 1.00 0.50 C ATOM 2685 C GLY 370 29.703 20.017 62.564 1.00 0.50 C ATOM 2686 O GLY 370 30.554 20.851 62.873 1.00 0.50 O ATOM 2687 N THR 371 29.106 19.215 63.474 1.00 0.50 N ATOM 2688 CA THR 371 29.367 19.400 64.875 1.00 0.50 C ATOM 2689 CB THR 371 28.745 18.382 65.809 1.00 0.50 C ATOM 2690 OG1 THR 371 29.375 17.118 65.681 1.00 0.50 O ATOM 2691 CG2 THR 371 27.246 18.233 65.517 1.00 0.50 C ATOM 2692 C THR 371 30.835 19.271 65.087 1.00 0.50 C ATOM 2693 O THR 371 31.428 20.090 65.778 1.00 0.50 O ATOM 2694 N ASN 372 31.467 18.243 64.498 1.00 0.50 N ATOM 2695 CA ASN 372 32.878 18.082 64.675 1.00 0.50 C ATOM 2696 CB ASN 372 33.413 16.780 64.062 1.00 0.50 C ATOM 2697 CG ASN 372 32.883 15.639 64.913 1.00 0.50 C ATOM 2698 OD1 ASN 372 32.359 14.651 64.398 1.00 0.50 O ATOM 2699 ND2 ASN 372 33.020 15.777 66.259 1.00 0.50 N ATOM 2700 C ASN 372 33.557 19.222 63.994 1.00 0.50 C ATOM 2701 O ASN 372 34.540 19.771 64.489 1.00 0.50 O ATOM 2702 N GLY 373 33.013 19.625 62.835 1.00 0.50 N ATOM 2703 CA GLY 373 33.608 20.643 62.024 1.00 0.50 C ATOM 2704 C GLY 373 33.689 21.924 62.791 1.00 0.50 C ATOM 2705 O GLY 373 34.673 22.647 62.657 1.00 0.50 O ATOM 2706 N TYR 374 32.672 22.249 63.615 1.00 0.50 N ATOM 2707 CA TYR 374 32.711 23.525 64.274 1.00 0.50 C ATOM 2708 CB TYR 374 31.501 23.833 65.189 1.00 0.50 C ATOM 2709 CG TYR 374 30.307 24.149 64.357 1.00 0.50 C ATOM 2710 CD1 TYR 374 29.483 23.153 63.894 1.00 0.50 C ATOM 2711 CD2 TYR 374 30.006 25.456 64.046 1.00 0.50 C ATOM 2712 CE1 TYR 374 28.382 23.451 63.129 1.00 0.50 C ATOM 2713 CE2 TYR 374 28.907 25.764 63.279 1.00 0.50 C ATOM 2714 CZ TYR 374 28.092 24.758 62.818 1.00 0.50 C ATOM 2715 OH TYR 374 26.963 25.066 62.030 1.00 0.50 H ATOM 2716 C TYR 374 33.947 23.616 65.111 1.00 0.50 C ATOM 2717 O TYR 374 34.642 24.628 65.039 1.00 0.50 O ATOM 2718 N PRO 375 34.284 22.634 65.898 1.00 0.50 N ATOM 2719 CA PRO 375 35.515 22.770 66.611 1.00 0.50 C ATOM 2720 CD PRO 375 33.296 21.952 66.717 1.00 0.50 C ATOM 2721 CB PRO 375 35.496 21.711 67.709 1.00 0.50 C ATOM 2722 CG PRO 375 34.000 21.587 68.033 1.00 0.50 C ATOM 2723 C PRO 375 36.699 22.705 65.707 1.00 0.50 C ATOM 2724 O PRO 375 37.757 23.193 66.101 1.00 0.50 O ATOM 2725 N ILE 376 36.574 22.111 64.504 1.00 0.50 N ATOM 2726 CA ILE 376 37.759 22.026 63.705 1.00 0.50 C ATOM 2727 CB ILE 376 38.085 20.619 63.274 1.00 0.50 C ATOM 2728 CG2 ILE 376 38.408 19.807 64.537 1.00 0.50 C ATOM 2729 CG1 ILE 376 36.953 20.016 62.425 1.00 0.50 C ATOM 2730 CD1 ILE 376 37.352 18.723 61.717 1.00 0.50 C ATOM 2731 C ILE 376 37.655 22.896 62.491 1.00 0.50 C ATOM 2732 O ILE 376 36.943 22.602 61.532 1.00 0.50 O ATOM 2733 N PHE 377 38.390 24.022 62.511 1.00 0.50 N ATOM 2734 CA PHE 377 38.457 24.884 61.370 1.00 0.50 C ATOM 2735 CB PHE 377 37.569 26.140 61.438 1.00 0.50 C ATOM 2736 CG PHE 377 36.204 25.808 60.941 1.00 0.50 C ATOM 2737 CD1 PHE 377 35.271 25.184 61.737 1.00 0.50 C ATOM 2738 CD2 PHE 377 35.862 26.150 59.653 1.00 0.50 C ATOM 2739 CE1 PHE 377 34.020 24.900 61.239 1.00 0.50 C ATOM 2740 CE2 PHE 377 34.615 25.867 59.152 1.00 0.50 C ATOM 2741 CZ PHE 377 33.691 25.238 59.949 1.00 0.50 C ATOM 2742 C PHE 377 39.860 25.357 61.247 1.00 0.50 C ATOM 2743 O PHE 377 40.579 25.489 62.236 1.00 0.50 O ATOM 2744 N GLN 378 40.293 25.601 59.998 1.00 0.50 N ATOM 2745 CA GLN 378 41.604 26.123 59.788 1.00 0.50 C ATOM 2746 CB GLN 378 42.251 25.661 58.471 1.00 0.50 C ATOM 2747 CG GLN 378 42.673 24.190 58.495 1.00 0.50 C ATOM 2748 CD GLN 378 41.440 23.335 58.752 1.00 0.50 C ATOM 2749 OE1 GLN 378 41.283 22.765 59.831 1.00 0.50 O ATOM 2750 NE2 GLN 378 40.539 23.240 57.738 1.00 0.50 N ATOM 2751 C GLN 378 41.458 27.604 59.759 1.00 0.50 C ATOM 2752 O GLN 378 40.422 28.130 59.358 1.00 0.50 O ATOM 2753 N TRP 379 42.502 28.321 60.209 1.00 0.50 N ATOM 2754 CA TRP 379 42.422 29.748 60.246 1.00 0.50 C ATOM 2755 CB TRP 379 42.878 30.341 61.589 1.00 0.50 C ATOM 2756 CG TRP 379 41.944 30.024 62.734 1.00 0.50 C ATOM 2757 CD2 TRP 379 41.012 30.960 63.299 1.00 0.50 C ATOM 2758 CD1 TRP 379 41.802 28.865 63.438 1.00 0.50 C ATOM 2759 NE1 TRP 379 40.832 29.016 64.401 1.00 0.50 N ATOM 2760 CE2 TRP 379 40.341 30.303 64.328 1.00 0.50 C ATOM 2761 CE3 TRP 379 40.742 32.261 62.985 1.00 0.50 C ATOM 2762 CZ2 TRP 379 39.381 30.941 65.063 1.00 0.50 C ATOM 2763 CZ3 TRP 379 39.773 32.901 63.726 1.00 0.50 C ATOM 2764 CH2 TRP 379 39.106 32.252 64.746 1.00 0.50 H ATOM 2765 C TRP 379 43.326 30.263 59.180 1.00 0.50 C ATOM 2766 O TRP 379 44.192 29.544 58.685 1.00 0.50 O ATOM 2767 N SER 380 43.127 31.532 58.778 1.00 0.50 N ATOM 2768 CA SER 380 43.960 32.061 57.744 1.00 0.50 C ATOM 2769 CB SER 380 43.612 33.509 57.356 1.00 0.50 C ATOM 2770 OG SER 380 44.482 33.960 56.329 1.00 0.50 O ATOM 2771 C SER 380 45.357 32.047 58.264 1.00 0.50 C ATOM 2772 O SER 380 45.598 32.323 59.438 1.00 0.50 O ATOM 2773 N GLU 381 46.314 31.697 57.389 1.00 0.50 N ATOM 2774 CA GLU 381 47.681 31.640 57.813 1.00 0.50 C ATOM 2775 CB GLU 381 48.236 30.207 57.818 1.00 0.50 C ATOM 2776 CG GLU 381 48.155 29.518 56.454 1.00 0.50 C ATOM 2777 CD GLU 381 48.563 28.064 56.640 1.00 0.50 C ATOM 2778 OE1 GLU 381 48.873 27.682 57.799 1.00 0.50 O ATOM 2779 OE2 GLU 381 48.567 27.316 55.626 1.00 0.50 O ATOM 2780 C GLU 381 48.497 32.460 56.820 1.00 0.50 C ATOM 2781 O GLU 381 47.914 32.888 55.789 1.00 0.50 O ATOM 2782 OXT GLU 381 49.712 32.667 57.082 1.00 0.50 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.36 56.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 58.29 77.3 22 100.0 22 ARMSMC SURFACE . . . . . . . . 81.73 58.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 91.09 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.18 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 95.02 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 111.87 12.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 95.18 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 76.20 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.87 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 70.48 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 64.81 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 79.63 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 57.32 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.20 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 38.16 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 35.71 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 68.20 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 123.48 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 123.48 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 123.48 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.31 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.31 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3003 CRMSCA SECONDARY STRUCTURE . . 7.37 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.24 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.64 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.40 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.39 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.33 129 100.0 129 CRMSMC BURIED . . . . . . . . 9.73 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.73 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.60 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.09 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.55 120 100.0 120 CRMSSC BURIED . . . . . . . . 12.69 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.02 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.67 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.94 224 100.0 224 CRMSALL BURIED . . . . . . . . 10.62 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.268 0.876 0.438 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.597 0.858 0.429 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.128 0.872 0.436 26 100.0 26 ERRCA BURIED . . . . . . . . 8.993 0.897 0.448 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.324 0.877 0.439 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.594 0.857 0.429 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.198 0.874 0.437 129 100.0 129 ERRMC BURIED . . . . . . . . 9.029 0.896 0.448 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.385 0.883 0.441 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.250 0.881 0.441 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 7.038 0.859 0.429 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.159 0.880 0.440 120 100.0 120 ERRSC BURIED . . . . . . . . 12.093 0.922 0.461 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.803 0.880 0.440 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 6.770 0.858 0.429 85 100.0 85 ERRALL SURFACE . . . . . . . . 8.664 0.877 0.438 224 100.0 224 ERRALL BURIED . . . . . . . . 9.844 0.903 0.451 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 20 31 31 DISTCA CA (P) 0.00 0.00 3.23 9.68 64.52 31 DISTCA CA (RMS) 0.00 0.00 2.54 3.81 6.98 DISTCA ALL (N) 0 0 4 31 150 254 254 DISTALL ALL (P) 0.00 0.00 1.57 12.20 59.06 254 DISTALL ALL (RMS) 0.00 0.00 2.76 4.09 6.91 DISTALL END of the results output