####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS311_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS311_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 352 - 373 4.89 9.27 LCS_AVERAGE: 64.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 361 - 366 1.85 9.95 LONGEST_CONTINUOUS_SEGMENT: 6 365 - 370 1.88 10.15 LONGEST_CONTINUOUS_SEGMENT: 6 366 - 371 1.73 13.71 LONGEST_CONTINUOUS_SEGMENT: 6 367 - 372 1.90 13.36 LONGEST_CONTINUOUS_SEGMENT: 6 371 - 376 1.47 14.46 LCS_AVERAGE: 16.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 362 - 366 0.40 12.01 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.50 15.04 LCS_AVERAGE: 12.59 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 4 5 6 6 8 10 11 11 11 13 14 16 17 18 19 22 24 28 29 LCS_GDT A 352 A 352 3 3 22 1 3 5 6 6 8 10 13 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT E 353 E 353 3 3 22 1 3 4 5 6 8 11 13 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT E 354 E 354 3 5 22 0 4 4 6 6 7 11 13 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT L 355 L 355 3 5 22 3 3 4 4 5 5 7 9 9 11 11 17 19 21 22 23 24 25 28 29 LCS_GDT G 356 G 356 3 5 22 3 4 4 6 6 6 7 9 9 11 12 14 18 19 22 23 24 25 28 29 LCS_GDT N 357 N 357 3 5 22 3 4 4 4 5 5 8 9 10 14 17 18 19 21 22 23 24 25 28 29 LCS_GDT I 358 I 358 3 5 22 3 4 4 4 6 7 11 13 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT I 359 I 359 3 3 22 3 4 4 5 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT V 360 V 360 3 4 22 3 4 5 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT A 361 A 361 3 6 22 3 4 5 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT W 362 W 362 5 6 22 5 5 6 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT N 363 N 363 5 6 22 5 5 6 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT P 364 P 364 5 6 22 5 5 6 6 6 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT N 365 N 365 5 6 22 5 5 6 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT L 366 L 366 5 6 22 5 5 6 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT W 367 W 367 4 6 22 3 4 4 6 6 10 11 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT K 368 K 368 4 6 22 3 4 4 6 7 10 12 14 16 16 17 18 19 21 21 23 24 25 28 29 LCS_GDT K 369 K 369 4 6 22 3 4 4 6 6 10 11 13 16 16 17 18 19 21 21 22 24 25 26 27 LCS_GDT G 370 G 370 3 6 22 2 3 4 5 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT T 371 T 371 3 6 22 2 3 4 5 6 10 12 14 14 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT N 372 N 372 5 6 22 3 5 6 6 7 10 12 14 14 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT G 373 G 373 5 6 22 3 5 5 6 7 9 11 14 14 16 17 18 19 21 22 23 24 25 28 29 LCS_GDT Y 374 Y 374 5 6 21 3 5 5 6 6 8 10 11 14 15 15 16 18 19 22 23 24 25 28 29 LCS_GDT P 375 P 375 5 6 20 3 5 5 6 6 7 8 11 11 12 13 14 16 17 19 21 23 24 28 29 LCS_GDT I 376 I 376 5 6 15 1 5 5 6 6 8 10 11 11 12 13 14 16 17 19 21 23 25 28 29 LCS_GDT F 377 F 377 4 5 13 1 4 4 5 5 5 7 7 9 11 12 13 16 17 19 21 23 25 28 29 LCS_GDT Q 378 Q 378 4 5 13 3 4 4 5 5 6 8 8 9 11 12 13 15 17 22 23 24 25 28 29 LCS_GDT W 379 W 379 4 5 13 3 3 4 5 6 7 8 8 9 11 12 13 15 17 19 21 23 25 28 29 LCS_GDT S 380 S 380 4 4 13 3 3 4 4 4 7 8 8 9 10 12 13 15 17 19 20 22 25 28 29 LCS_GDT E 381 E 381 4 4 13 3 3 4 4 4 5 6 6 7 9 10 12 15 17 19 20 21 22 22 23 LCS_AVERAGE LCS_A: 31.08 ( 12.59 16.65 64.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 6 7 10 12 14 16 16 17 18 19 21 22 23 24 25 28 29 GDT PERCENT_AT 16.13 16.13 19.35 19.35 22.58 32.26 38.71 45.16 51.61 51.61 54.84 58.06 61.29 67.74 70.97 74.19 77.42 80.65 90.32 93.55 GDT RMS_LOCAL 0.40 0.40 0.87 0.87 1.98 2.38 2.60 2.87 3.30 3.30 3.56 3.86 4.31 4.65 5.63 5.61 5.62 5.97 7.04 7.22 GDT RMS_ALL_AT 12.01 12.01 10.33 10.33 9.94 10.10 9.85 9.89 10.23 10.23 10.07 9.80 9.35 9.34 8.60 8.74 8.87 8.66 7.87 7.76 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 18.509 0 0.476 0.681 20.400 0.000 0.000 LGA A 352 A 352 11.358 0 0.622 0.595 13.903 0.357 0.286 LGA E 353 E 353 11.630 0 0.627 1.151 18.205 0.000 0.000 LGA E 354 E 354 11.523 0 0.615 1.173 13.085 0.000 0.000 LGA L 355 L 355 10.011 0 0.627 0.719 13.441 0.238 0.119 LGA G 356 G 356 9.150 0 0.344 0.344 10.524 1.429 1.429 LGA N 357 N 357 9.410 0 0.585 0.625 13.995 1.905 0.952 LGA I 358 I 358 6.536 0 0.590 0.797 7.257 14.524 16.071 LGA I 359 I 359 3.485 0 0.606 0.892 4.792 42.143 41.310 LGA V 360 V 360 3.104 0 0.629 0.658 6.259 50.833 37.687 LGA A 361 A 361 2.817 0 0.691 0.626 5.099 73.333 63.905 LGA W 362 W 362 2.335 0 0.052 0.800 11.625 61.667 31.156 LGA N 363 N 363 2.007 0 0.214 1.213 3.581 62.857 62.143 LGA P 364 P 364 2.817 0 0.063 0.252 4.177 62.857 56.531 LGA N 365 N 365 0.798 0 0.514 0.934 4.038 77.619 68.512 LGA L 366 L 366 1.475 0 0.609 0.631 5.082 75.357 58.869 LGA W 367 W 367 3.982 0 0.126 0.946 12.715 45.714 14.694 LGA K 368 K 368 3.193 0 0.031 1.036 7.756 43.690 36.085 LGA K 369 K 369 5.528 0 0.106 0.976 17.889 31.786 14.656 LGA G 370 G 370 2.951 0 0.452 0.452 4.100 50.595 50.595 LGA T 371 T 371 3.206 0 0.668 0.965 6.867 65.238 44.830 LGA N 372 N 372 2.035 0 0.594 1.325 4.838 68.810 58.095 LGA G 373 G 373 3.991 0 0.317 0.317 5.148 37.738 37.738 LGA Y 374 Y 374 7.148 0 0.086 0.277 9.911 8.333 15.198 LGA P 375 P 375 11.787 0 0.143 0.158 12.643 0.119 0.136 LGA I 376 I 376 14.074 0 0.251 1.265 16.681 0.000 0.000 LGA F 377 F 377 12.736 0 0.538 0.856 18.962 0.000 0.000 LGA Q 378 Q 378 12.123 0 0.671 1.120 14.642 0.000 4.444 LGA W 379 W 379 17.737 0 0.599 1.454 25.450 0.000 0.000 LGA S 380 S 380 16.879 0 0.075 0.765 19.675 0.000 0.000 LGA E 381 E 381 23.090 0 0.346 1.093 30.350 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.704 7.617 9.180 28.295 23.079 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 2.87 38.710 33.888 0.472 LGA_LOCAL RMSD: 2.867 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.887 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.704 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.493369 * X + -0.860383 * Y + -0.127780 * Z + 102.497330 Y_new = 0.832719 * X + -0.424754 * Y + -0.355193 * Z + 92.389435 Z_new = 0.251327 * X + -0.281647 * Y + 0.926018 * Z + -200.730453 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.105668 -0.254051 -0.295258 [DEG: 120.6459 -14.5561 -16.9170 ] ZXZ: -0.345333 0.387072 2.413021 [DEG: -19.7861 22.1776 138.2559 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS311_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS311_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 2.87 33.888 7.70 REMARK ---------------------------------------------------------- MOLECULE T0537TS311_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 3gq8_A ATOM 2529 N SER 351 16.475 27.213 54.259 1.00197.65 N ATOM 2530 CA SER 351 15.481 27.917 53.509 1.00197.65 C ATOM 2531 CB SER 351 16.038 29.127 52.738 1.00197.65 C ATOM 2532 OG SER 351 14.991 29.774 52.029 1.00197.65 O ATOM 2533 C SER 351 14.863 26.982 52.527 1.00197.65 C ATOM 2534 O SER 351 14.747 27.298 51.344 1.00197.65 O ATOM 2535 N ALA 352 14.459 25.788 52.996 1.00 82.99 N ATOM 2536 CA ALA 352 13.815 24.897 52.085 1.00 82.99 C ATOM 2537 CB ALA 352 14.300 23.441 52.183 1.00 82.99 C ATOM 2538 C ALA 352 12.369 24.904 52.436 1.00 82.99 C ATOM 2539 O ALA 352 11.988 24.612 53.569 1.00 82.99 O ATOM 2540 N GLU 353 11.525 25.270 51.456 1.00 98.37 N ATOM 2541 CA GLU 353 10.117 25.248 51.680 1.00 98.37 C ATOM 2542 CB GLU 353 9.420 26.599 51.456 1.00 98.37 C ATOM 2543 CG GLU 353 7.953 26.586 51.891 1.00 98.37 C ATOM 2544 CD GLU 353 7.361 27.965 51.634 1.00 98.37 C ATOM 2545 OE1 GLU 353 8.096 28.966 51.840 1.00 98.37 O ATOM 2546 OE2 GLU 353 6.168 28.034 51.229 1.00 98.37 O ATOM 2547 C GLU 353 9.585 24.286 50.681 1.00 98.37 C ATOM 2548 O GLU 353 9.990 24.301 49.520 1.00 98.37 O ATOM 2549 N GLU 354 8.682 23.390 51.110 1.00 73.88 N ATOM 2550 CA GLU 354 8.225 22.442 50.150 1.00 73.88 C ATOM 2551 CB GLU 354 9.091 21.177 50.142 1.00 73.88 C ATOM 2552 CG GLU 354 10.530 21.496 49.730 1.00 73.88 C ATOM 2553 CD GLU 354 11.352 20.220 49.748 1.00 73.88 C ATOM 2554 OE1 GLU 354 11.130 19.380 50.660 1.00 73.88 O ATOM 2555 OE2 GLU 354 12.221 20.074 48.848 1.00 73.88 O ATOM 2556 C GLU 354 6.821 22.078 50.472 1.00 73.88 C ATOM 2557 O GLU 354 6.370 22.220 51.608 1.00 73.88 O ATOM 2558 N LEU 355 6.076 21.631 49.444 1.00 55.08 N ATOM 2559 CA LEU 355 4.714 21.254 49.648 1.00 55.08 C ATOM 2560 CB LEU 355 3.753 21.903 48.638 1.00 55.08 C ATOM 2561 CG LEU 355 3.803 23.445 48.650 1.00 55.08 C ATOM 2562 CD1 LEU 355 2.830 24.052 47.626 1.00 55.08 C ATOM 2563 CD2 LEU 355 3.611 24.004 50.068 1.00 55.08 C ATOM 2564 C LEU 355 4.639 19.782 49.423 1.00 55.08 C ATOM 2565 O LEU 355 4.986 19.291 48.351 1.00 55.08 O ATOM 2566 N GLY 356 4.201 19.035 50.452 1.00 68.12 N ATOM 2567 CA GLY 356 4.041 17.620 50.301 1.00 68.12 C ATOM 2568 C GLY 356 5.389 17.024 50.080 1.00 68.12 C ATOM 2569 O GLY 356 5.508 15.951 49.490 1.00 68.12 O ATOM 2570 N ASN 357 6.443 17.702 50.571 1.00230.76 N ATOM 2571 CA ASN 357 7.782 17.242 50.343 1.00230.76 C ATOM 2572 CB ASN 357 8.650 18.302 49.649 1.00230.76 C ATOM 2573 CG ASN 357 7.998 18.570 48.297 1.00230.76 C ATOM 2574 OD1 ASN 357 7.503 17.642 47.660 1.00230.76 O ATOM 2575 ND2 ASN 357 7.968 19.858 47.859 1.00230.76 N ATOM 2576 C ASN 357 8.381 16.932 51.672 1.00230.76 C ATOM 2577 O ASN 357 7.732 17.152 52.691 1.00230.76 O ATOM 2578 N ILE 358 9.608 16.359 51.686 1.00344.75 N ATOM 2579 CA ILE 358 10.262 15.992 52.910 1.00344.75 C ATOM 2580 CB ILE 358 10.078 14.530 53.225 1.00344.75 C ATOM 2581 CG2 ILE 358 10.773 14.216 54.563 1.00344.75 C ATOM 2582 CG1 ILE 358 8.587 14.169 53.230 1.00344.75 C ATOM 2583 CD1 ILE 358 7.784 14.929 54.277 1.00344.75 C ATOM 2584 C ILE 358 11.739 16.186 52.721 1.00344.75 C ATOM 2585 O ILE 358 12.229 16.246 51.595 1.00344.75 O ATOM 2586 N ILE 359 12.488 16.328 53.834 1.00138.56 N ATOM 2587 CA ILE 359 13.916 16.356 53.735 1.00138.56 C ATOM 2588 CB ILE 359 14.556 17.627 54.226 1.00138.56 C ATOM 2589 CG2 ILE 359 14.264 17.796 55.724 1.00138.56 C ATOM 2590 CG1 ILE 359 16.050 17.631 53.858 1.00138.56 C ATOM 2591 CD1 ILE 359 16.727 18.991 54.012 1.00138.56 C ATOM 2592 C ILE 359 14.404 15.214 54.573 1.00138.56 C ATOM 2593 O ILE 359 14.012 15.068 55.729 1.00138.56 O ATOM 2594 N VAL 360 15.253 14.341 53.996 1.00 43.44 N ATOM 2595 CA VAL 360 15.721 13.224 54.765 1.00 43.44 C ATOM 2596 CB VAL 360 15.126 11.914 54.333 1.00 43.44 C ATOM 2597 CG1 VAL 360 15.714 10.793 55.205 1.00 43.44 C ATOM 2598 CG2 VAL 360 13.590 12.027 54.401 1.00 43.44 C ATOM 2599 C VAL 360 17.200 13.135 54.585 1.00 43.44 C ATOM 2600 O VAL 360 17.737 13.509 53.543 1.00 43.44 O ATOM 2601 N ALA 361 17.909 12.651 55.625 1.00 50.59 N ATOM 2602 CA ALA 361 19.327 12.540 55.490 1.00 50.59 C ATOM 2603 CB ALA 361 20.103 13.692 56.150 1.00 50.59 C ATOM 2604 C ALA 361 19.764 11.280 56.162 1.00 50.59 C ATOM 2605 O ALA 361 19.218 10.877 57.189 1.00 50.59 O ATOM 2606 N TRP 362 20.751 10.601 55.549 1.00 62.07 N ATOM 2607 CA TRP 362 21.320 9.422 56.129 1.00 62.07 C ATOM 2608 CB TRP 362 22.280 8.701 55.171 1.00 62.07 C ATOM 2609 CG TRP 362 21.584 7.877 54.115 1.00 62.07 C ATOM 2610 CD2 TRP 362 21.729 6.453 54.017 1.00 62.07 C ATOM 2611 CD1 TRP 362 20.762 8.256 53.094 1.00 62.07 C ATOM 2612 NE1 TRP 362 20.372 7.150 52.375 1.00 62.07 N ATOM 2613 CE2 TRP 362 20.964 6.035 52.929 1.00 62.07 C ATOM 2614 CE3 TRP 362 22.445 5.568 54.772 1.00 62.07 C ATOM 2615 CZ2 TRP 362 20.904 4.716 52.578 1.00 62.07 C ATOM 2616 CZ3 TRP 362 22.381 4.239 54.418 1.00 62.07 C ATOM 2617 CH2 TRP 362 21.624 3.824 53.341 1.00 62.07 C ATOM 2618 C TRP 362 22.080 9.811 57.357 1.00 62.07 C ATOM 2619 O TRP 362 21.942 9.184 58.407 1.00 62.07 O ATOM 2620 N ASN 363 22.888 10.883 57.257 1.00169.08 N ATOM 2621 CA ASN 363 23.727 11.288 58.351 0.50169.08 C ATOM 2622 CB ASN 363 24.708 12.415 58.017 0.50169.08 C ATOM 2623 CG ASN 363 25.867 11.821 57.258 0.50169.08 C ATOM 2624 OD1 ASN 363 25.682 11.201 56.212 0.50169.08 O ATOM 2625 ND2 ASN 363 27.098 12.023 57.801 0.50169.08 N ATOM 2626 C ASN 363 22.907 11.827 59.465 1.00169.08 C ATOM 2627 O ASN 363 21.882 12.484 59.288 1.00169.08 O ATOM 2628 N PRO 364 23.370 11.488 60.629 1.00106.04 N ATOM 2629 CA PRO 364 22.805 12.007 61.837 1.00106.04 C ATOM 2630 CD PRO 364 24.033 10.213 60.833 1.00106.04 C ATOM 2631 CB PRO 364 23.294 11.090 62.962 1.00106.04 C ATOM 2632 CG PRO 364 24.406 10.236 62.321 1.00106.04 C ATOM 2633 C PRO 364 23.214 13.437 61.985 1.00106.04 C ATOM 2634 O PRO 364 22.563 14.168 62.728 1.00106.04 O ATOM 2635 N ASN 365 24.296 13.854 61.298 1.00227.32 N ATOM 2636 CA ASN 365 24.770 15.194 61.464 1.00227.32 C ATOM 2637 CB ASN 365 26.283 15.223 61.754 1.00227.32 C ATOM 2638 CG ASN 365 26.714 16.635 62.109 1.00227.32 C ATOM 2639 OD1 ASN 365 26.207 17.622 61.578 1.00227.32 O ATOM 2640 ND2 ASN 365 27.702 16.742 63.038 1.00227.32 N ATOM 2641 C ASN 365 24.544 15.957 60.196 1.00227.32 C ATOM 2642 O ASN 365 25.423 16.025 59.339 1.00227.32 O ATOM 2643 N LEU 366 23.368 16.598 60.063 1.00181.55 N ATOM 2644 CA LEU 366 23.111 17.400 58.902 1.00181.55 C ATOM 2645 CB LEU 366 21.946 16.867 58.045 1.00181.55 C ATOM 2646 CG LEU 366 21.667 17.680 56.766 1.00181.55 C ATOM 2647 CD1 LEU 366 22.870 17.637 55.809 1.00181.55 C ATOM 2648 CD2 LEU 366 20.363 17.225 56.089 1.00181.55 C ATOM 2649 C LEU 366 22.750 18.751 59.431 1.00181.55 C ATOM 2650 O LEU 366 22.169 18.864 60.509 1.00181.55 O ATOM 2651 N TRP 367 23.114 19.827 58.710 1.00 80.32 N ATOM 2652 CA TRP 367 22.792 21.126 59.224 1.00 80.32 C ATOM 2653 CB TRP 367 23.942 22.132 59.040 1.00 80.32 C ATOM 2654 CG TRP 367 25.159 21.790 59.871 1.00 80.32 C ATOM 2655 CD2 TRP 367 26.498 22.229 59.583 1.00 80.32 C ATOM 2656 CD1 TRP 367 25.244 21.014 60.989 1.00 80.32 C ATOM 2657 NE1 TRP 367 26.548 20.944 61.418 1.00 80.32 N ATOM 2658 CE2 TRP 367 27.330 21.688 60.561 1.00 80.32 C ATOM 2659 CE3 TRP 367 26.992 23.017 58.582 1.00 80.32 C ATOM 2660 CZ2 TRP 367 28.676 21.924 60.552 1.00 80.32 C ATOM 2661 CZ3 TRP 367 28.348 23.256 58.580 1.00 80.32 C ATOM 2662 CH2 TRP 367 29.175 22.722 59.546 1.00 80.32 C ATOM 2663 C TRP 367 21.601 21.611 58.466 1.00 80.32 C ATOM 2664 O TRP 367 21.651 21.769 57.248 1.00 80.32 O ATOM 2665 N LYS 368 20.481 21.850 59.175 1.00114.74 N ATOM 2666 CA LYS 368 19.306 22.271 58.476 1.00114.74 C ATOM 2667 CB LYS 368 18.338 21.125 58.144 1.00114.74 C ATOM 2668 CG LYS 368 18.817 20.223 57.008 1.00114.74 C ATOM 2669 CD LYS 368 18.007 18.934 56.879 1.00114.74 C ATOM 2670 CE LYS 368 16.517 19.125 57.174 1.00114.74 C ATOM 2671 NZ LYS 368 16.005 20.334 56.490 1.00114.74 N ATOM 2672 C LYS 368 18.531 23.239 59.307 1.00114.74 C ATOM 2673 O LYS 368 18.670 23.298 60.527 1.00114.74 O ATOM 2674 N LYS 369 17.705 24.053 58.621 1.00 93.92 N ATOM 2675 CA LYS 369 16.827 24.982 59.267 1.00 93.92 C ATOM 2676 CB LYS 369 17.534 26.219 59.844 1.00 93.92 C ATOM 2677 CG LYS 369 18.054 27.192 58.786 1.00 93.92 C ATOM 2678 CD LYS 369 18.408 28.562 59.367 1.00 93.92 C ATOM 2679 CE LYS 369 18.736 29.624 58.317 1.00 93.92 C ATOM 2680 NZ LYS 369 18.897 30.939 58.975 1.00 93.92 N ATOM 2681 C LYS 369 15.880 25.465 58.211 1.00 93.92 C ATOM 2682 O LYS 369 16.093 25.223 57.025 1.00 93.92 O ATOM 2683 N GLY 370 14.797 26.160 58.619 1.00 33.84 N ATOM 2684 CA GLY 370 13.880 26.700 57.653 1.00 33.84 C ATOM 2685 C GLY 370 13.121 25.596 56.979 1.00 33.84 C ATOM 2686 O GLY 370 13.154 25.474 55.755 1.00 33.84 O ATOM 2687 N THR 371 12.421 24.756 57.770 1.00 50.83 N ATOM 2688 CA THR 371 11.663 23.650 57.243 1.00 50.83 C ATOM 2689 CB THR 371 11.951 22.388 58.012 1.00 50.83 C ATOM 2690 OG1 THR 371 13.335 22.081 57.949 1.00 50.83 O ATOM 2691 CG2 THR 371 11.131 21.227 57.438 1.00 50.83 C ATOM 2692 C THR 371 10.192 23.964 57.410 1.00 50.83 C ATOM 2693 O THR 371 9.799 24.539 58.423 1.00 50.83 O ATOM 2694 N ASN 372 9.333 23.622 56.410 1.00112.83 N ATOM 2695 CA ASN 372 7.927 23.918 56.551 1.00112.83 C ATOM 2696 CB ASN 372 7.561 25.338 56.080 1.00112.83 C ATOM 2697 CG ASN 372 8.199 26.365 57.001 1.00112.83 C ATOM 2698 OD1 ASN 372 7.881 26.441 58.185 1.00112.83 O ATOM 2699 ND2 ASN 372 9.124 27.189 56.437 1.00112.83 N ATOM 2700 C ASN 372 7.077 23.002 55.703 1.00112.83 C ATOM 2701 O ASN 372 7.415 22.685 54.565 1.00112.83 O ATOM 2702 N GLY 373 5.913 22.577 56.247 1.00 54.83 N ATOM 2703 CA GLY 373 4.929 21.833 55.499 1.00 54.83 C ATOM 2704 C GLY 373 5.404 20.462 55.132 1.00 54.83 C ATOM 2705 O GLY 373 5.187 20.015 54.007 1.00 54.83 O ATOM 2706 N TYR 374 6.063 19.741 56.057 1.00105.90 N ATOM 2707 CA TYR 374 6.521 18.422 55.721 1.00105.90 C ATOM 2708 CB TYR 374 8.026 18.223 55.992 1.00105.90 C ATOM 2709 CG TYR 374 8.857 19.157 55.178 1.00105.90 C ATOM 2710 CD1 TYR 374 9.006 20.467 55.560 1.00105.90 C ATOM 2711 CD2 TYR 374 9.491 18.740 54.033 1.00105.90 C ATOM 2712 CE1 TYR 374 9.776 21.332 54.818 1.00105.90 C ATOM 2713 CE2 TYR 374 10.260 19.595 53.284 1.00105.90 C ATOM 2714 CZ TYR 374 10.407 20.901 53.680 1.00105.90 C ATOM 2715 OH TYR 374 11.193 21.797 52.927 1.00105.90 O ATOM 2716 C TYR 374 5.874 17.480 56.682 1.00105.90 C ATOM 2717 O TYR 374 5.849 17.757 57.881 1.00105.90 O ATOM 2718 N PRO 375 5.315 16.387 56.229 1.00179.15 N ATOM 2719 CA PRO 375 4.880 15.409 57.181 1.00179.15 C ATOM 2720 CD PRO 375 4.547 16.341 54.997 1.00179.15 C ATOM 2721 CB PRO 375 4.038 14.409 56.396 1.00179.15 C ATOM 2722 CG PRO 375 3.486 15.250 55.225 1.00179.15 C ATOM 2723 C PRO 375 6.193 14.898 57.653 1.00179.15 C ATOM 2724 O PRO 375 6.919 14.385 56.809 1.00179.15 O ATOM 2725 N ILE 376 6.463 14.945 58.971 1.00199.73 N ATOM 2726 CA ILE 376 7.755 14.716 59.565 1.00199.73 C ATOM 2727 CB ILE 376 8.265 13.287 59.550 1.00199.73 C ATOM 2728 CG2 ILE 376 8.779 12.916 58.149 1.00199.73 C ATOM 2729 CG1 ILE 376 9.355 13.118 60.620 1.00199.73 C ATOM 2730 CD1 ILE 376 9.726 11.660 60.885 1.00199.73 C ATOM 2731 C ILE 376 8.728 15.646 58.894 1.00199.73 C ATOM 2732 O ILE 376 8.931 15.618 57.682 1.00199.73 O ATOM 2733 N PHE 377 9.361 16.527 59.692 1.00 84.61 N ATOM 2734 CA PHE 377 10.213 17.522 59.107 1.00 84.61 C ATOM 2735 CB PHE 377 10.860 18.427 60.168 1.00 84.61 C ATOM 2736 CG PHE 377 9.787 19.264 60.775 1.00 84.61 C ATOM 2737 CD1 PHE 377 8.878 18.723 61.656 1.00 84.61 C ATOM 2738 CD2 PHE 377 9.709 20.605 60.477 1.00 84.61 C ATOM 2739 CE1 PHE 377 7.894 19.506 62.215 1.00 84.61 C ATOM 2740 CE2 PHE 377 8.729 21.392 61.034 1.00 84.61 C ATOM 2741 CZ PHE 377 7.818 20.842 61.903 1.00 84.61 C ATOM 2742 C PHE 377 11.316 16.834 58.382 1.00 84.61 C ATOM 2743 O PHE 377 11.511 17.026 57.182 1.00 84.61 O ATOM 2744 N GLN 378 12.068 15.986 59.101 1.00118.45 N ATOM 2745 CA GLN 378 13.112 15.278 58.435 1.00118.45 C ATOM 2746 CB GLN 378 14.473 15.994 58.428 1.00118.45 C ATOM 2747 CG GLN 378 15.096 16.110 59.819 1.00118.45 C ATOM 2748 CD GLN 378 16.548 16.544 59.661 1.00118.45 C ATOM 2749 OE1 GLN 378 17.034 17.404 60.393 1.00118.45 O ATOM 2750 NE2 GLN 378 17.265 15.928 58.684 1.00118.45 N ATOM 2751 C GLN 378 13.332 14.032 59.213 1.00118.45 C ATOM 2752 O GLN 378 13.215 14.026 60.438 1.00118.45 O ATOM 2753 N TRP 379 13.647 12.924 58.522 1.00110.38 N ATOM 2754 CA TRP 379 13.961 11.766 59.290 1.00110.38 C ATOM 2755 CB TRP 379 13.485 10.438 58.683 1.00110.38 C ATOM 2756 CG TRP 379 13.688 9.248 59.594 1.00110.38 C ATOM 2757 CD2 TRP 379 12.656 8.697 60.424 1.00110.38 C ATOM 2758 CD1 TRP 379 14.795 8.477 59.793 1.00110.38 C ATOM 2759 NE1 TRP 379 14.520 7.484 60.704 1.00110.38 N ATOM 2760 CE2 TRP 379 13.204 7.605 61.098 1.00110.38 C ATOM 2761 CE3 TRP 379 11.355 9.066 60.606 1.00110.38 C ATOM 2762 CZ2 TRP 379 12.454 6.865 61.970 1.00110.38 C ATOM 2763 CZ3 TRP 379 10.602 8.322 61.486 1.00110.38 C ATOM 2764 CH2 TRP 379 11.141 7.242 62.156 1.00110.38 C ATOM 2765 C TRP 379 15.449 11.729 59.290 1.00110.38 C ATOM 2766 O TRP 379 16.073 11.619 58.236 1.00110.38 O ATOM 2767 N SER 380 16.061 11.845 60.481 1.00 34.38 N ATOM 2768 CA SER 380 17.489 11.826 60.534 1.00 34.38 C ATOM 2769 CB SER 380 18.091 12.942 61.404 1.00 34.38 C ATOM 2770 OG SER 380 17.735 12.740 62.764 1.00 34.38 O ATOM 2771 C SER 380 17.858 10.530 61.158 1.00 34.38 C ATOM 2772 O SER 380 17.159 10.043 62.045 1.00 34.38 O ATOM 2773 N GLU 381 18.960 9.919 60.685 1.00 63.47 N ATOM 2774 CA GLU 381 19.360 8.660 61.231 1.00 63.47 C ATOM 2775 CB GLU 381 20.455 7.956 60.406 1.00 63.47 C ATOM 2776 CG GLU 381 20.861 6.593 60.969 1.00 63.47 C ATOM 2777 CD GLU 381 21.763 5.904 59.954 1.00 63.47 C ATOM 2778 OE1 GLU 381 21.304 5.711 58.793 1.00 63.47 O ATOM 2779 OE2 GLU 381 22.917 5.562 60.323 1.00 63.47 O ATOM 2780 C GLU 381 19.903 8.911 62.633 1.00 63.47 C ATOM 2781 O GLU 381 19.124 9.391 63.500 1.00 63.47 O ATOM 2782 OXT GLU 381 21.105 8.624 62.865 1.00 63.47 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 98.09 28.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 116.83 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 94.94 30.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 112.53 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.31 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 88.01 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 38.47 87.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 89.21 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 59.58 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.52 63.6 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 55.93 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 60.39 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 54.01 60.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 5.97 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.79 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 70.71 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 29.80 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 76.79 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.40 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 96.40 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 96.40 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.70 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.70 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2485 CRMSCA SECONDARY STRUCTURE . . 6.27 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.71 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.66 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.83 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.45 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.89 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.53 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.55 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.89 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.93 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.80 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.90 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.24 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.25 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.46 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.35 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 107.764 0.842 0.858 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 107.520 0.861 0.872 11 100.0 11 ERRCA SURFACE . . . . . . . . 112.054 0.849 0.863 26 100.0 26 ERRCA BURIED . . . . . . . . 85.452 0.806 0.829 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 108.913 0.843 0.858 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 108.240 0.859 0.871 54 100.0 54 ERRMC SURFACE . . . . . . . . 112.406 0.846 0.861 129 100.0 129 ERRMC BURIED . . . . . . . . 89.318 0.823 0.844 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 107.371 0.811 0.832 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 103.413 0.801 0.824 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 108.686 0.801 0.825 41 100.0 41 ERRSC SURFACE . . . . . . . . 106.640 0.804 0.826 120 100.0 120 ERRSC BURIED . . . . . . . . 116.135 0.894 0.900 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 107.601 0.827 0.845 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 108.088 0.832 0.850 85 100.0 85 ERRALL SURFACE . . . . . . . . 109.184 0.825 0.844 224 100.0 224 ERRALL BURIED . . . . . . . . 95.780 0.840 0.857 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 6 29 31 31 DISTCA CA (P) 0.00 0.00 3.23 19.35 93.55 31 DISTCA CA (RMS) 0.00 0.00 2.87 4.07 7.28 DISTCA ALL (N) 1 1 4 41 185 254 254 DISTALL ALL (P) 0.39 0.39 1.57 16.14 72.83 254 DISTALL ALL (RMS) 0.96 0.96 2.34 3.84 7.13 DISTALL END of the results output