####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS304_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS304_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 362 - 380 4.88 17.27 LCS_AVERAGE: 55.05 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 364 - 372 1.73 16.14 LCS_AVERAGE: 20.71 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 366 - 370 0.99 17.17 LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.76 15.65 LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.85 21.28 LCS_AVERAGE: 13.01 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 4 4 4 4 5 6 8 8 9 10 11 14 16 16 18 18 19 19 LCS_GDT A 352 A 352 3 4 14 3 3 4 4 4 4 5 6 8 10 11 12 14 14 16 16 18 18 19 19 LCS_GDT E 353 E 353 3 4 14 3 3 4 4 4 5 5 6 9 10 11 12 14 14 16 16 18 18 19 19 LCS_GDT E 354 E 354 3 4 14 3 3 3 4 4 5 5 8 8 10 11 12 14 14 16 16 18 18 19 19 LCS_GDT L 355 L 355 4 4 14 3 3 4 4 4 5 5 8 9 10 11 12 14 14 14 16 18 18 19 19 LCS_GDT G 356 G 356 4 4 14 3 3 4 4 4 5 5 8 8 9 10 11 12 12 14 15 15 15 15 18 LCS_GDT N 357 N 357 4 4 14 3 3 4 4 4 5 5 6 8 9 10 12 14 14 14 16 18 18 19 19 LCS_GDT I 358 I 358 4 4 14 3 3 4 4 4 6 6 8 9 10 11 12 14 14 16 16 18 18 19 19 LCS_GDT I 359 I 359 3 5 14 3 3 4 4 4 6 6 8 9 10 11 12 14 14 15 16 18 18 19 19 LCS_GDT V 360 V 360 3 5 14 3 3 3 4 4 6 6 8 9 10 11 12 14 14 16 16 18 18 19 19 LCS_GDT A 361 A 361 3 5 14 3 3 3 4 4 6 6 8 9 10 11 13 14 14 16 16 18 18 19 21 LCS_GDT W 362 W 362 4 5 19 3 3 4 4 4 6 11 12 12 12 13 13 14 16 19 19 19 19 20 21 LCS_GDT N 363 N 363 4 5 19 3 3 4 4 9 10 11 12 12 12 13 15 17 18 19 19 19 19 20 21 LCS_GDT P 364 P 364 4 9 19 3 4 4 5 8 9 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT N 365 N 365 4 9 19 3 4 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT L 366 L 366 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT W 367 W 367 5 9 19 3 4 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT K 368 K 368 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT K 369 K 369 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT G 370 G 370 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT T 371 T 371 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT N 372 N 372 5 9 19 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT G 373 G 373 5 8 19 3 4 5 5 6 9 10 11 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT Y 374 Y 374 5 8 19 3 4 5 5 6 9 10 11 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT P 375 P 375 5 8 19 3 4 5 5 6 9 10 11 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT I 376 I 376 5 8 19 3 4 5 5 6 9 10 11 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT F 377 F 377 5 8 19 3 4 5 5 6 9 10 11 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT Q 378 Q 378 3 8 19 3 3 3 4 6 9 10 10 10 12 14 16 17 18 19 19 19 19 20 21 LCS_GDT W 379 W 379 3 6 19 3 3 4 5 8 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 LCS_GDT S 380 S 380 3 4 19 3 3 3 3 4 5 6 7 9 12 13 16 17 18 19 19 19 19 20 21 LCS_GDT E 381 E 381 3 4 18 3 3 3 4 4 5 6 7 8 9 10 12 13 14 17 17 19 19 20 21 LCS_AVERAGE LCS_A: 29.59 ( 13.01 20.71 55.05 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 7 9 10 11 12 12 14 15 16 17 18 19 19 19 19 20 21 GDT PERCENT_AT 9.68 16.13 19.35 22.58 29.03 32.26 35.48 38.71 38.71 45.16 48.39 51.61 54.84 58.06 61.29 61.29 61.29 61.29 64.52 67.74 GDT RMS_LOCAL 0.04 0.72 0.87 1.09 1.61 1.80 2.11 2.49 2.49 3.59 3.90 4.13 4.38 4.55 4.88 4.88 4.88 4.88 5.29 5.77 GDT RMS_ALL_AT 15.08 16.66 16.29 16.62 16.76 16.48 16.25 15.90 15.90 18.53 18.12 18.02 17.79 17.78 17.27 17.27 17.27 17.27 17.45 16.79 # Checking swapping # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 29.431 0 0.042 0.729 30.383 0.000 0.000 LGA A 352 A 352 30.092 0 0.628 0.610 31.794 0.000 0.000 LGA E 353 E 353 31.618 0 0.637 0.517 33.110 0.000 0.000 LGA E 354 E 354 31.843 0 0.604 0.971 38.756 0.000 0.000 LGA L 355 L 355 29.474 0 0.556 0.598 30.426 0.000 0.000 LGA G 356 G 356 29.629 0 0.386 0.386 29.706 0.000 0.000 LGA N 357 N 357 24.121 0 0.604 1.319 26.405 0.000 0.000 LGA I 358 I 358 18.448 0 0.596 1.579 20.396 0.000 0.000 LGA I 359 I 359 16.599 0 0.583 1.755 20.354 0.000 0.000 LGA V 360 V 360 13.395 0 0.570 1.389 15.190 0.000 0.000 LGA A 361 A 361 9.184 0 0.131 0.126 10.969 11.548 9.238 LGA W 362 W 362 4.703 0 0.600 0.835 6.761 36.190 30.680 LGA N 363 N 363 2.720 0 0.226 0.987 8.645 53.810 34.524 LGA P 364 P 364 3.731 0 0.688 0.576 5.778 53.810 43.061 LGA N 365 N 365 1.655 0 0.211 0.347 5.204 69.048 55.238 LGA L 366 L 366 1.612 0 0.594 1.324 5.088 71.548 63.393 LGA W 367 W 367 2.805 0 0.178 0.295 9.472 61.071 24.762 LGA K 368 K 368 1.409 0 0.152 0.850 7.007 83.690 62.857 LGA K 369 K 369 1.014 0 0.178 1.269 6.403 79.286 64.868 LGA G 370 G 370 1.525 0 0.020 0.020 1.525 83.810 83.810 LGA T 371 T 371 1.445 0 0.647 1.368 4.442 73.571 62.653 LGA N 372 N 372 1.857 0 0.606 1.187 5.690 51.071 43.274 LGA G 373 G 373 9.056 0 0.497 0.497 11.680 4.643 4.643 LGA Y 374 Y 374 11.213 0 0.083 1.126 17.703 0.476 0.159 LGA P 375 P 375 9.740 0 0.680 0.624 11.465 0.595 0.340 LGA I 376 I 376 10.008 0 0.231 1.314 11.129 0.000 0.714 LGA F 377 F 377 8.646 0 0.050 1.200 9.145 8.214 6.104 LGA Q 378 Q 378 7.483 0 0.649 0.554 17.128 20.119 8.995 LGA W 379 W 379 2.679 0 0.698 1.103 5.720 42.143 51.156 LGA S 380 S 380 8.883 0 0.103 0.109 11.262 4.286 2.857 LGA E 381 E 381 12.546 0 0.399 1.167 16.080 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 12.188 12.093 12.534 26.094 21.075 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.49 34.677 32.257 0.462 LGA_LOCAL RMSD: 2.495 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.901 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 12.188 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.245405 * X + 0.880178 * Y + -0.406280 * Z + -10.408315 Y_new = 0.265254 * X + -0.464068 * Y + -0.845152 * Z + 149.852219 Z_new = -0.932425 * X + 0.099637 * Y + -0.347355 * Z + 145.347214 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.824248 1.201067 2.862248 [DEG: 47.2260 68.8161 163.9948 ] ZXZ: -0.448104 1.925545 -1.464342 [DEG: -25.6744 110.3256 -83.9007 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS304_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS304_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.49 32.257 12.19 REMARK ---------------------------------------------------------- MOLECULE T0537TS304_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1rmg_ ATOM 2529 N SER 351 32.381 7.225 50.437 1.00236.50 N ATOM 2530 CA SER 351 33.266 6.335 51.129 1.00236.50 C ATOM 2531 CB SER 351 33.444 6.657 52.620 1.00236.50 C ATOM 2532 OG SER 351 34.142 7.883 52.772 1.00236.50 O ATOM 2533 C SER 351 32.701 4.960 51.055 1.00236.50 C ATOM 2534 O SER 351 31.530 4.767 50.729 1.00236.50 O ATOM 2535 N ALA 352 33.554 3.955 51.326 1.00280.08 N ATOM 2536 CA ALA 352 33.083 2.607 51.334 1.00280.08 C ATOM 2537 CB ALA 352 33.146 1.926 49.957 1.00280.08 C ATOM 2538 C ALA 352 33.983 1.836 52.241 1.00280.08 C ATOM 2539 O ALA 352 35.166 2.142 52.368 1.00280.08 O ATOM 2540 N GLU 353 33.423 0.822 52.924 1.00277.95 N ATOM 2541 CA GLU 353 34.239 -0.023 53.741 1.00277.95 C ATOM 2542 CB GLU 353 33.457 -0.724 54.868 1.00277.95 C ATOM 2543 CG GLU 353 34.305 -1.626 55.768 1.00277.95 C ATOM 2544 CD GLU 353 33.398 -2.172 56.865 1.00277.95 C ATOM 2545 OE1 GLU 353 32.608 -1.373 57.434 1.00277.95 O ATOM 2546 OE2 GLU 353 33.489 -3.396 57.153 1.00277.95 O ATOM 2547 C GLU 353 34.748 -1.046 52.788 1.00277.95 C ATOM 2548 O GLU 353 34.087 -1.323 51.788 1.00277.95 O ATOM 2549 N GLU 354 35.935 -1.625 53.040 1.00258.88 N ATOM 2550 CA GLU 354 36.400 -2.553 52.056 1.00258.88 C ATOM 2551 CB GLU 354 37.820 -3.087 52.317 1.00258.88 C ATOM 2552 CG GLU 354 38.293 -4.066 51.238 1.00258.88 C ATOM 2553 CD GLU 354 39.791 -4.263 51.393 1.00258.88 C ATOM 2554 OE1 GLU 354 40.462 -3.308 51.866 1.00258.88 O ATOM 2555 OE2 GLU 354 40.289 -5.364 51.032 1.00258.88 O ATOM 2556 C GLU 354 35.440 -3.692 52.027 1.00258.88 C ATOM 2557 O GLU 354 35.371 -4.502 52.950 1.00258.88 O ATOM 2558 N LEU 355 34.643 -3.741 50.943 1.00235.88 N ATOM 2559 CA LEU 355 33.658 -4.755 50.751 1.00235.88 C ATOM 2560 CB LEU 355 32.407 -4.599 51.628 1.00235.88 C ATOM 2561 CG LEU 355 32.631 -4.914 53.115 1.00235.88 C ATOM 2562 CD1 LEU 355 31.331 -4.733 53.910 1.00235.88 C ATOM 2563 CD2 LEU 355 33.244 -6.310 53.306 1.00235.88 C ATOM 2564 C LEU 355 33.190 -4.640 49.340 1.00235.88 C ATOM 2565 O LEU 355 33.863 -4.069 48.484 1.00235.88 O ATOM 2566 N GLY 356 32.005 -5.216 49.078 1.00157.61 N ATOM 2567 CA GLY 356 31.374 -5.147 47.797 1.00157.61 C ATOM 2568 C GLY 356 30.397 -4.022 47.911 1.00157.61 C ATOM 2569 O GLY 356 30.774 -2.869 48.113 1.00157.61 O ATOM 2570 N ASN 357 29.098 -4.339 47.787 1.00196.38 N ATOM 2571 CA ASN 357 28.090 -3.330 47.905 1.00196.38 C ATOM 2572 CB ASN 357 26.660 -3.893 47.844 1.00196.38 C ATOM 2573 CG ASN 357 25.678 -2.731 47.898 1.00196.38 C ATOM 2574 OD1 ASN 357 24.711 -2.752 48.657 1.00196.38 O ATOM 2575 ND2 ASN 357 25.928 -1.687 47.062 1.00196.38 N ATOM 2576 C ASN 357 28.268 -2.690 49.240 1.00196.38 C ATOM 2577 O ASN 357 28.796 -3.299 50.168 1.00196.38 O ATOM 2578 N ILE 358 27.843 -1.417 49.359 1.00104.86 N ATOM 2579 CA ILE 358 28.008 -0.728 50.601 1.00104.86 C ATOM 2580 CB ILE 358 28.759 0.574 50.496 1.00104.86 C ATOM 2581 CG2 ILE 358 30.167 0.276 49.948 1.00104.86 C ATOM 2582 CG1 ILE 358 27.980 1.596 49.656 1.00104.86 C ATOM 2583 CD1 ILE 358 28.536 3.013 49.787 1.00104.86 C ATOM 2584 C ILE 358 26.645 -0.433 51.136 1.00104.86 C ATOM 2585 O ILE 358 25.671 -0.333 50.392 1.00104.86 O ATOM 2586 N ILE 359 26.556 -0.299 52.471 1.00130.56 N ATOM 2587 CA ILE 359 25.311 -0.091 53.147 1.00130.56 C ATOM 2588 CB ILE 359 25.182 -0.919 54.399 1.00130.56 C ATOM 2589 CG2 ILE 359 25.065 -2.389 53.963 1.00130.56 C ATOM 2590 CG1 ILE 359 26.329 -0.652 55.400 1.00130.56 C ATOM 2591 CD1 ILE 359 26.282 0.697 56.121 1.00130.56 C ATOM 2592 C ILE 359 25.185 1.355 53.475 1.00130.56 C ATOM 2593 O ILE 359 26.180 2.065 53.622 1.00130.56 O ATOM 2594 N VAL 360 23.926 1.834 53.558 1.00104.05 N ATOM 2595 CA VAL 360 23.711 3.238 53.736 1.00104.05 C ATOM 2596 CB VAL 360 22.442 3.715 53.077 1.00104.05 C ATOM 2597 CG1 VAL 360 22.629 3.586 51.558 1.00104.05 C ATOM 2598 CG2 VAL 360 21.255 2.877 53.588 1.00104.05 C ATOM 2599 C VAL 360 23.672 3.601 55.189 1.00104.05 C ATOM 2600 O VAL 360 22.651 3.473 55.861 1.00104.05 O ATOM 2601 N ALA 361 24.832 4.038 55.717 1.00 91.09 N ATOM 2602 CA ALA 361 24.960 4.591 57.034 1.00 91.09 C ATOM 2603 CB ALA 361 26.425 4.825 57.442 1.00 91.09 C ATOM 2604 C ALA 361 24.293 5.917 56.956 1.00 91.09 C ATOM 2605 O ALA 361 23.678 6.400 57.905 1.00 91.09 O ATOM 2606 N TRP 362 24.399 6.491 55.746 1.00252.24 N ATOM 2607 CA TRP 362 24.049 7.822 55.361 1.00252.24 C ATOM 2608 CB TRP 362 23.656 7.907 53.876 1.00252.24 C ATOM 2609 CG TRP 362 23.432 9.303 53.360 1.00252.24 C ATOM 2610 CD2 TRP 362 22.858 9.609 52.078 1.00252.24 C ATOM 2611 CD1 TRP 362 23.718 10.496 53.953 1.00252.24 C ATOM 2612 NE1 TRP 362 23.368 11.529 53.118 1.00252.24 N ATOM 2613 CE2 TRP 362 22.837 10.998 51.961 1.00252.24 C ATOM 2614 CE3 TRP 362 22.394 8.800 51.079 1.00252.24 C ATOM 2615 CZ2 TRP 362 22.344 11.603 50.839 1.00252.24 C ATOM 2616 CZ3 TRP 362 21.897 9.417 49.951 1.00252.24 C ATOM 2617 CH2 TRP 362 21.872 10.790 49.833 1.00252.24 H ATOM 2618 C TRP 362 22.916 8.376 56.159 1.00252.24 C ATOM 2619 O TRP 362 21.780 7.908 56.107 1.00252.24 O ATOM 2620 N ASN 363 23.271 9.418 56.937 1.00 97.41 N ATOM 2621 CA ASN 363 22.397 10.268 57.689 1.00 97.41 C ATOM 2622 CB ASN 363 22.295 9.928 59.187 1.00 97.41 C ATOM 2623 CG ASN 363 21.447 8.678 59.362 1.00 97.41 C ATOM 2624 OD1 ASN 363 20.561 8.386 58.560 1.00 97.41 O ATOM 2625 ND2 ASN 363 21.724 7.917 60.455 1.00 97.41 N ATOM 2626 C ASN 363 23.076 11.593 57.612 1.00 97.41 C ATOM 2627 O ASN 363 24.286 11.667 57.824 1.00 97.41 O ATOM 2628 N PRO 364 22.384 12.645 57.302 1.00 87.02 N ATOM 2629 CA PRO 364 23.102 13.884 57.223 1.00 87.02 C ATOM 2630 CD PRO 364 21.336 12.565 56.294 1.00 87.02 C ATOM 2631 CB PRO 364 22.237 14.823 56.386 1.00 87.02 C ATOM 2632 CG PRO 364 21.447 13.865 55.475 1.00 87.02 C ATOM 2633 C PRO 364 23.462 14.419 58.568 1.00 87.02 C ATOM 2634 O PRO 364 22.673 14.279 59.501 1.00 87.02 O ATOM 2635 N ASN 365 24.649 15.043 58.691 1.00 79.24 N ATOM 2636 CA ASN 365 25.012 15.646 59.936 1.00 79.24 C ATOM 2637 CB ASN 365 26.299 16.492 59.854 1.00 79.24 C ATOM 2638 CG ASN 365 27.481 15.650 59.405 1.00 79.24 C ATOM 2639 OD1 ASN 365 28.007 14.818 60.141 1.00 79.24 O ATOM 2640 ND2 ASN 365 27.916 15.877 58.138 1.00 79.24 N ATOM 2641 C ASN 365 23.968 16.676 60.125 1.00 79.24 C ATOM 2642 O ASN 365 23.364 16.810 61.188 1.00 79.24 O ATOM 2643 N LEU 366 23.733 17.417 59.029 1.00 79.31 N ATOM 2644 CA LEU 366 22.828 18.519 59.026 1.00 79.31 C ATOM 2645 CB LEU 366 22.961 19.401 57.775 1.00 79.31 C ATOM 2646 CG LEU 366 24.379 19.940 57.516 1.00 79.31 C ATOM 2647 CD1 LEU 366 24.417 20.814 56.252 1.00 79.31 C ATOM 2648 CD2 LEU 366 24.950 20.647 58.752 1.00 79.31 C ATOM 2649 C LEU 366 21.443 17.984 58.975 1.00 79.31 C ATOM 2650 O LEU 366 21.087 17.237 58.065 1.00 79.31 O ATOM 2651 N TRP 367 20.622 18.349 59.971 1.00144.71 N ATOM 2652 CA TRP 367 19.245 17.982 59.895 1.00144.71 C ATOM 2653 CB TRP 367 18.775 17.061 61.031 1.00144.71 C ATOM 2654 CG TRP 367 19.431 15.704 61.097 1.00144.71 C ATOM 2655 CD2 TRP 367 19.285 14.675 60.109 1.00144.71 C ATOM 2656 CD1 TRP 367 20.256 15.202 62.060 1.00144.71 C ATOM 2657 NE1 TRP 367 20.618 13.916 61.745 1.00144.71 N ATOM 2658 CE2 TRP 367 20.030 13.579 60.543 1.00144.71 C ATOM 2659 CE3 TRP 367 18.586 14.642 58.937 1.00144.71 C ATOM 2660 CZ2 TRP 367 20.088 12.429 59.811 1.00144.71 C ATOM 2661 CZ3 TRP 367 18.650 13.480 58.198 1.00144.71 C ATOM 2662 CH2 TRP 367 19.385 12.394 58.626 1.00144.71 H ATOM 2663 C TRP 367 18.519 19.261 60.116 1.00144.71 C ATOM 2664 O TRP 367 18.454 19.737 61.247 1.00144.71 O ATOM 2665 N LYS 368 17.953 19.872 59.059 1.00129.97 N ATOM 2666 CA LYS 368 17.254 21.081 59.361 1.00129.97 C ATOM 2667 CB LYS 368 17.784 22.366 58.694 1.00129.97 C ATOM 2668 CG LYS 368 19.222 22.760 59.034 1.00129.97 C ATOM 2669 CD LYS 368 20.281 22.107 58.146 1.00129.97 C ATOM 2670 CE LYS 368 20.388 22.788 56.777 1.00129.97 C ATOM 2671 NZ LYS 368 21.660 22.426 56.113 1.00129.97 N ATOM 2672 C LYS 368 15.863 20.951 58.864 1.00129.97 C ATOM 2673 O LYS 368 15.630 20.740 57.674 1.00129.97 O ATOM 2674 N LYS 369 14.885 21.062 59.776 1.00175.39 N ATOM 2675 CA LYS 369 13.544 21.067 59.291 1.00175.39 C ATOM 2676 CB LYS 369 12.637 20.040 59.987 1.00175.39 C ATOM 2677 CG LYS 369 11.285 19.857 59.294 1.00175.39 C ATOM 2678 CD LYS 369 11.414 19.206 57.914 1.00175.39 C ATOM 2679 CE LYS 369 10.086 19.015 57.178 1.00175.39 C ATOM 2680 NZ LYS 369 9.637 20.295 56.585 1.00175.39 N ATOM 2681 C LYS 369 13.033 22.427 59.625 1.00175.39 C ATOM 2682 O LYS 369 12.646 22.688 60.762 1.00175.39 O ATOM 2683 N GLY 370 13.047 23.339 58.635 1.00111.50 N ATOM 2684 CA GLY 370 12.588 24.679 58.856 1.00111.50 C ATOM 2685 C GLY 370 11.181 24.740 58.381 1.00111.50 C ATOM 2686 O GLY 370 10.745 23.926 57.568 1.00111.50 O ATOM 2687 N THR 371 10.420 25.736 58.857 1.00183.42 N ATOM 2688 CA THR 371 9.062 25.735 58.431 1.00183.42 C ATOM 2689 CB THR 371 8.089 26.101 59.506 1.00183.42 C ATOM 2690 OG1 THR 371 6.764 25.987 59.008 1.00183.42 O ATOM 2691 CG2 THR 371 8.374 27.533 59.982 1.00183.42 C ATOM 2692 C THR 371 8.874 26.667 57.288 1.00183.42 C ATOM 2693 O THR 371 9.649 27.598 57.072 1.00183.42 O ATOM 2694 N ASN 372 7.817 26.402 56.503 1.00225.37 N ATOM 2695 CA ASN 372 7.497 27.281 55.427 1.00225.37 C ATOM 2696 CB ASN 372 6.214 26.861 54.693 1.00225.37 C ATOM 2697 CG ASN 372 5.963 27.801 53.525 1.00225.37 C ATOM 2698 OD1 ASN 372 6.289 28.986 53.564 1.00225.37 O ATOM 2699 ND2 ASN 372 5.345 27.254 52.445 1.00225.37 N ATOM 2700 C ASN 372 7.236 28.570 56.113 1.00225.37 C ATOM 2701 O ASN 372 6.450 28.634 57.056 1.00225.37 O ATOM 2702 N GLY 373 7.898 29.644 55.660 1.00 82.36 N ATOM 2703 CA GLY 373 7.749 30.871 56.369 1.00 82.36 C ATOM 2704 C GLY 373 9.064 31.558 56.284 1.00 82.36 C ATOM 2705 O GLY 373 9.494 31.944 55.199 1.00 82.36 O ATOM 2706 N TYR 374 9.728 31.757 57.439 1.00162.63 N ATOM 2707 CA TYR 374 10.979 32.449 57.390 1.00162.63 C ATOM 2708 CB TYR 374 10.944 33.695 58.302 1.00162.63 C ATOM 2709 CG TYR 374 11.999 34.697 57.950 1.00162.63 C ATOM 2710 CD1 TYR 374 11.904 35.432 56.789 1.00162.63 C ATOM 2711 CD2 TYR 374 13.054 34.951 58.796 1.00162.63 C ATOM 2712 CE1 TYR 374 12.855 36.371 56.466 1.00162.63 C ATOM 2713 CE2 TYR 374 14.011 35.890 58.481 1.00162.63 C ATOM 2714 CZ TYR 374 13.916 36.598 57.307 1.00162.63 C ATOM 2715 OH TYR 374 14.886 37.564 56.966 1.00162.63 H ATOM 2716 C TYR 374 12.018 31.468 57.852 1.00162.63 C ATOM 2717 O TYR 374 12.172 31.176 59.038 1.00162.63 O ATOM 2718 N PRO 375 12.689 30.920 56.878 1.00164.07 N ATOM 2719 CA PRO 375 13.711 29.925 57.108 1.00164.07 C ATOM 2720 CD PRO 375 11.967 30.657 55.640 1.00164.07 C ATOM 2721 CB PRO 375 13.832 29.135 55.806 1.00164.07 C ATOM 2722 CG PRO 375 12.459 29.293 55.140 1.00164.07 C ATOM 2723 C PRO 375 15.066 30.383 57.587 1.00164.07 C ATOM 2724 O PRO 375 15.903 29.513 57.815 1.00164.07 O ATOM 2725 N ILE 376 15.337 31.693 57.747 1.00193.58 N ATOM 2726 CA ILE 376 16.690 32.148 57.981 1.00193.58 C ATOM 2727 CB ILE 376 16.786 33.639 58.228 1.00193.58 C ATOM 2728 CG2 ILE 376 16.202 33.927 59.619 1.00193.58 C ATOM 2729 CG1 ILE 376 18.214 34.189 58.020 1.00193.58 C ATOM 2730 CD1 ILE 376 19.266 33.666 58.997 1.00193.58 C ATOM 2731 C ILE 376 17.363 31.426 59.115 1.00193.58 C ATOM 2732 O ILE 376 16.849 31.331 60.228 1.00193.58 O ATOM 2733 N PHE 377 18.563 30.884 58.806 1.00165.73 N ATOM 2734 CA PHE 377 19.456 30.233 59.724 1.00165.73 C ATOM 2735 CB PHE 377 19.211 28.719 59.871 1.00165.73 C ATOM 2736 CG PHE 377 19.313 28.092 58.518 1.00165.73 C ATOM 2737 CD1 PHE 377 20.523 27.677 58.010 1.00165.73 C ATOM 2738 CD2 PHE 377 18.186 27.923 57.746 1.00165.73 C ATOM 2739 CE1 PHE 377 20.601 27.102 56.761 1.00165.73 C ATOM 2740 CE2 PHE 377 18.260 27.349 56.497 1.00165.73 C ATOM 2741 CZ PHE 377 19.470 26.935 55.999 1.00165.73 C ATOM 2742 C PHE 377 20.818 30.402 59.130 1.00165.73 C ATOM 2743 O PHE 377 20.940 30.526 57.913 1.00165.73 O ATOM 2744 N GLN 378 21.883 30.423 59.961 1.00 48.44 N ATOM 2745 CA GLN 378 23.188 30.580 59.381 1.00 48.44 C ATOM 2746 CB GLN 378 23.855 31.947 59.655 1.00 48.44 C ATOM 2747 CG GLN 378 23.180 33.126 58.952 1.00 48.44 C ATOM 2748 CD GLN 378 24.051 34.359 59.166 1.00 48.44 C ATOM 2749 OE1 GLN 378 24.886 34.393 60.068 1.00 48.44 O ATOM 2750 NE2 GLN 378 23.864 35.395 58.303 1.00 48.44 N ATOM 2751 C GLN 378 24.111 29.533 59.925 1.00 48.44 C ATOM 2752 O GLN 378 23.995 29.109 61.074 1.00 48.44 O ATOM 2753 N TRP 379 25.053 29.081 59.071 1.00136.62 N ATOM 2754 CA TRP 379 26.065 28.154 59.479 1.00136.62 C ATOM 2755 CB TRP 379 26.912 27.575 58.331 1.00136.62 C ATOM 2756 CG TRP 379 26.356 26.338 57.669 1.00136.62 C ATOM 2757 CD2 TRP 379 26.838 25.025 57.989 1.00136.62 C ATOM 2758 CD1 TRP 379 25.412 26.180 56.699 1.00136.62 C ATOM 2759 NE1 TRP 379 25.277 24.843 56.392 1.00136.62 N ATOM 2760 CE2 TRP 379 26.151 24.124 57.181 1.00136.62 C ATOM 2761 CE3 TRP 379 27.784 24.608 58.882 1.00136.62 C ATOM 2762 CZ2 TRP 379 26.407 22.782 57.249 1.00136.62 C ATOM 2763 CZ3 TRP 379 28.031 23.256 58.958 1.00136.62 C ATOM 2764 CH2 TRP 379 27.356 22.360 58.156 1.00136.62 H ATOM 2765 C TRP 379 27.007 28.895 60.361 1.00136.62 C ATOM 2766 O TRP 379 27.127 30.118 60.282 1.00136.62 O ATOM 2767 N SER 380 27.695 28.157 61.250 1.00 80.06 N ATOM 2768 CA SER 380 28.594 28.790 62.163 1.00 80.06 C ATOM 2769 CB SER 380 28.412 28.333 63.619 1.00 80.06 C ATOM 2770 OG SER 380 27.091 28.610 64.055 1.00 80.06 O ATOM 2771 C SER 380 29.981 28.417 61.774 1.00 80.06 C ATOM 2772 O SER 380 30.206 27.487 61.002 1.00 80.06 O ATOM 2773 N GLU 381 30.953 29.180 62.304 1.00 42.73 N ATOM 2774 CA GLU 381 32.330 28.923 62.029 1.00 42.73 C ATOM 2775 CB GLU 381 33.232 30.125 62.356 1.00 42.73 C ATOM 2776 CG GLU 381 32.908 31.355 61.504 1.00 42.73 C ATOM 2777 CD GLU 381 33.927 32.439 61.821 1.00 42.73 C ATOM 2778 OE1 GLU 381 35.042 32.074 62.282 1.00 42.73 O ATOM 2779 OE2 GLU 381 33.612 33.639 61.603 1.00 42.73 O ATOM 2780 C GLU 381 32.751 27.772 62.934 1.00 42.73 C ATOM 2781 O GLU 381 32.401 26.605 62.611 1.00 42.73 O ATOM 2782 OXT GLU 381 33.432 28.046 63.957 1.00 42.73 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.66 35.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 105.18 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.11 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 86.38 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.40 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 98.37 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 102.31 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.19 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 101.00 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.04 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 72.02 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 58.15 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 72.71 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 64.95 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 52.60 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 52.35 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 29.33 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 52.60 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.24 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 74.24 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 74.24 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.19 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.19 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3932 CRMSCA SECONDARY STRUCTURE . . 13.92 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.82 26 100.0 26 CRMSCA BURIED . . . . . . . . 13.96 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.11 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 13.79 54 100.0 54 CRMSMC SURFACE . . . . . . . . 11.85 129 100.0 129 CRMSMC BURIED . . . . . . . . 13.48 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.99 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 12.90 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 14.00 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.82 120 100.0 120 CRMSSC BURIED . . . . . . . . 14.80 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.56 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 13.93 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.37 224 100.0 224 CRMSALL BURIED . . . . . . . . 13.91 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 140.751 0.842 0.856 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 176.680 0.860 0.870 11 100.0 11 ERRCA SURFACE . . . . . . . . 144.721 0.846 0.860 26 100.0 26 ERRCA BURIED . . . . . . . . 120.107 0.819 0.835 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 141.501 0.844 0.858 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 177.364 0.862 0.871 54 100.0 54 ERRMC SURFACE . . . . . . . . 145.261 0.847 0.861 129 100.0 129 ERRMC BURIED . . . . . . . . 120.409 0.823 0.838 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 145.611 0.833 0.850 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 149.177 0.840 0.856 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 195.574 0.875 0.883 41 100.0 41 ERRSC SURFACE . . . . . . . . 147.900 0.835 0.853 120 100.0 120 ERRSC BURIED . . . . . . . . 118.135 0.803 0.821 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 143.279 0.838 0.854 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 185.779 0.867 0.876 85 100.0 85 ERRALL SURFACE . . . . . . . . 146.430 0.841 0.857 224 100.0 224 ERRALL BURIED . . . . . . . . 119.753 0.817 0.833 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 12 31 31 DISTCA CA (P) 0.00 0.00 0.00 0.00 38.71 31 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 7.07 DISTCA ALL (N) 0 0 0 7 108 254 254 DISTALL ALL (P) 0.00 0.00 0.00 2.76 42.52 254 DISTALL ALL (RMS) 0.00 0.00 0.00 4.05 7.56 DISTALL END of the results output