####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS301_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS301_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 351 - 363 4.15 27.49 LCS_AVERAGE: 38.40 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 351 - 358 1.47 35.12 LONGEST_CONTINUOUS_SEGMENT: 8 365 - 372 1.91 25.77 LCS_AVERAGE: 21.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 351 - 357 0.45 34.70 LCS_AVERAGE: 14.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT A 352 A 352 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT E 353 E 353 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT E 354 E 354 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT L 355 L 355 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT G 356 G 356 7 8 13 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT N 357 N 357 7 8 13 3 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT I 358 I 358 3 8 13 3 3 3 3 7 9 9 9 9 9 11 13 13 14 15 15 16 16 16 16 LCS_GDT I 359 I 359 3 4 13 3 3 3 4 4 9 9 9 10 11 11 12 13 14 15 15 16 16 16 16 LCS_GDT V 360 V 360 3 4 13 3 3 3 4 4 4 7 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT A 361 A 361 3 4 13 3 3 3 4 4 5 6 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT W 362 W 362 3 4 13 3 3 3 4 4 5 6 10 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT N 363 N 363 3 4 13 3 3 3 4 4 5 6 8 10 11 11 13 13 14 15 15 16 16 16 16 LCS_GDT P 364 P 364 3 4 12 3 3 3 4 4 4 7 7 9 9 10 10 10 12 14 15 16 16 16 16 LCS_GDT N 365 N 365 3 8 12 3 3 4 6 7 8 8 8 9 10 11 13 13 14 15 15 16 16 16 16 LCS_GDT L 366 L 366 4 8 11 4 4 5 6 7 8 8 8 9 9 10 10 10 13 15 15 16 16 16 16 LCS_GDT W 367 W 367 4 8 11 4 4 5 6 7 8 8 8 9 9 10 10 10 11 11 11 12 12 14 14 LCS_GDT K 368 K 368 4 8 11 4 4 5 6 7 8 8 8 9 9 10 10 10 11 11 11 12 12 12 13 LCS_GDT K 369 K 369 4 8 11 4 4 4 6 7 8 8 8 9 9 10 10 10 11 11 11 12 12 12 13 LCS_GDT G 370 G 370 4 8 11 3 4 5 6 7 8 8 8 9 9 10 10 10 11 11 11 12 12 12 13 LCS_GDT T 371 T 371 4 8 11 3 4 5 6 7 8 8 8 9 9 10 10 10 11 11 11 12 12 12 12 LCS_GDT N 372 N 372 4 8 11 0 3 4 6 7 8 8 8 9 9 10 10 10 10 11 11 12 12 12 12 LCS_GDT G 373 G 373 4 7 11 4 4 6 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT Y 374 Y 374 4 7 11 4 4 6 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT P 375 P 375 5 7 11 4 5 6 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT I 376 I 376 5 7 11 4 5 5 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT F 377 F 377 5 7 11 3 5 6 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT Q 378 Q 378 5 7 11 3 5 6 6 7 7 7 8 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT W 379 W 379 5 7 11 3 5 6 6 7 7 7 7 8 9 9 9 10 10 10 11 11 11 12 12 LCS_GDT S 380 S 380 3 4 11 3 3 3 3 4 4 5 6 6 8 8 9 10 10 10 11 11 11 12 12 LCS_GDT E 381 E 381 3 4 11 3 3 3 3 3 4 5 6 6 7 7 8 8 9 9 11 11 11 11 11 LCS_AVERAGE LCS_A: 24.90 ( 14.57 21.75 38.40 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 7 7 7 7 9 9 10 10 11 11 13 13 14 15 15 16 16 16 16 GDT PERCENT_AT 19.35 22.58 22.58 22.58 22.58 29.03 29.03 32.26 32.26 35.48 35.48 41.94 41.94 45.16 48.39 48.39 51.61 51.61 51.61 51.61 GDT RMS_LOCAL 0.23 0.45 0.45 0.45 0.45 2.12 2.12 3.09 3.09 3.26 3.26 4.39 4.27 4.57 4.96 4.96 5.34 5.34 5.34 5.34 GDT RMS_ALL_AT 34.50 34.70 34.70 34.70 34.70 32.55 32.55 28.22 28.22 28.34 28.34 27.75 26.71 27.31 27.00 27.00 26.83 26.83 26.83 26.83 # Checking swapping # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.440 0 0.595 0.735 5.614 83.690 66.587 LGA A 352 A 352 2.437 0 0.055 0.073 3.509 64.881 60.571 LGA E 353 E 353 2.024 0 0.029 0.904 5.526 70.952 55.714 LGA E 354 E 354 0.812 0 0.057 0.620 3.713 79.643 68.519 LGA L 355 L 355 2.584 0 0.068 0.246 3.502 55.833 56.488 LGA G 356 G 356 3.450 0 0.617 0.617 4.786 45.357 45.357 LGA N 357 N 357 3.487 0 0.527 1.319 6.356 35.833 34.762 LGA I 358 I 358 7.444 0 0.602 1.574 12.065 18.690 9.464 LGA I 359 I 359 5.176 0 0.577 1.586 9.886 26.667 21.071 LGA V 360 V 360 3.795 0 0.646 0.664 6.308 50.238 37.347 LGA A 361 A 361 4.209 0 0.686 0.619 6.654 40.238 34.857 LGA W 362 W 362 4.438 0 0.625 1.285 15.881 35.714 12.109 LGA N 363 N 363 7.496 0 0.367 1.470 10.024 6.905 7.619 LGA P 364 P 364 13.422 0 0.724 0.704 15.358 0.000 0.000 LGA N 365 N 365 11.222 0 0.678 0.846 13.925 0.000 3.452 LGA L 366 L 366 13.199 0 0.594 0.946 14.694 0.000 0.000 LGA W 367 W 367 18.097 0 0.110 1.220 24.495 0.000 0.000 LGA K 368 K 368 24.811 0 0.129 0.546 29.953 0.000 0.000 LGA K 369 K 369 30.282 0 0.171 0.898 32.521 0.000 0.000 LGA G 370 G 370 35.407 0 0.051 0.051 38.015 0.000 0.000 LGA T 371 T 371 41.448 0 0.675 0.640 45.180 0.000 0.000 LGA N 372 N 372 47.011 0 0.662 1.333 48.810 0.000 0.000 LGA G 373 G 373 48.740 0 0.699 0.699 48.740 0.000 0.000 LGA Y 374 Y 374 46.901 0 0.118 1.194 53.922 0.000 0.000 LGA P 375 P 375 43.291 0 0.053 0.099 44.504 0.000 0.000 LGA I 376 I 376 43.635 0 0.209 1.195 47.813 0.000 0.000 LGA F 377 F 377 40.033 0 0.088 1.085 42.183 0.000 0.000 LGA Q 378 Q 378 39.351 0 0.662 1.154 39.791 0.000 0.000 LGA W 379 W 379 40.269 0 0.662 1.364 44.179 0.000 0.000 LGA S 380 S 380 42.568 0 0.080 0.654 44.970 0.000 0.000 LGA E 381 E 381 44.711 0 0.527 1.351 49.264 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 18.056 18.028 18.488 19.827 16.578 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 3.09 31.452 28.838 0.314 LGA_LOCAL RMSD: 3.088 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 28.223 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 18.056 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.030146 * X + 0.955119 * Y + -0.294685 * Z + -45.023472 Y_new = -0.169290 * X + -0.285681 * Y + -0.943254 * Z + 59.243793 Z_new = -0.985105 * X + 0.078322 * Y + 0.153080 * Z + 62.071983 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.394572 1.397984 0.472918 [DEG: -79.9031 80.0986 27.0962 ] ZXZ: -0.302805 1.417112 -1.491457 [DEG: -17.3495 81.1945 -85.4542 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS301_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS301_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 3.09 28.838 18.06 REMARK ---------------------------------------------------------- MOLECULE T0537TS301_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 3.748 11.717 50.135 1.00 68.30 N ATOM 2530 CA SER 351 4.937 12.277 49.562 1.00 68.30 C ATOM 2531 CB SER 351 4.796 12.602 48.064 1.00 68.30 C ATOM 2532 OG SER 351 5.996 13.184 47.577 1.00 68.30 O ATOM 2533 C SER 351 5.205 13.561 50.261 1.00 68.30 C ATOM 2534 O SER 351 6.345 13.914 50.555 1.00 68.30 O ATOM 2535 N ALA 352 4.118 14.287 50.542 1.00 55.21 N ATOM 2536 CA ALA 352 4.136 15.559 51.176 1.00 55.21 C ATOM 2537 CB ALA 352 2.684 16.063 51.245 1.00 55.21 C ATOM 2538 C ALA 352 4.704 15.418 52.561 1.00 55.21 C ATOM 2539 O ALA 352 5.597 16.169 52.951 1.00 55.21 O ATOM 2540 N GLU 353 4.216 14.420 53.327 1.00 89.82 N ATOM 2541 CA GLU 353 4.632 14.217 54.689 1.00 89.82 C ATOM 2542 CB GLU 353 3.807 13.147 55.421 1.00 89.82 C ATOM 2543 CG GLU 353 3.955 11.755 54.811 1.00 89.82 C ATOM 2544 CD GLU 353 3.202 10.771 55.692 1.00 89.82 C ATOM 2545 OE1 GLU 353 2.553 11.228 56.669 1.00 89.82 O ATOM 2546 OE2 GLU 353 3.268 9.547 55.399 1.00 89.82 O ATOM 2547 C GLU 353 6.056 13.777 54.739 1.00 89.82 C ATOM 2548 O GLU 353 6.826 14.242 55.577 1.00 89.82 O ATOM 2549 N GLU 354 6.453 12.879 53.821 1.00 35.55 N ATOM 2550 CA GLU 354 7.787 12.367 53.848 1.00 35.55 C ATOM 2551 CB GLU 354 8.079 11.370 52.715 1.00 35.55 C ATOM 2552 CG GLU 354 7.302 10.060 52.846 1.00 35.55 C ATOM 2553 CD GLU 354 7.731 9.156 51.702 1.00 35.55 C ATOM 2554 OE1 GLU 354 8.964 8.946 51.544 1.00 35.55 O ATOM 2555 OE2 GLU 354 6.832 8.667 50.968 1.00 35.55 O ATOM 2556 C GLU 354 8.694 13.530 53.666 1.00 35.55 C ATOM 2557 O GLU 354 9.761 13.602 54.272 1.00 35.55 O ATOM 2558 N LEU 355 8.271 14.493 52.830 1.00 45.71 N ATOM 2559 CA LEU 355 9.115 15.612 52.567 1.00 45.71 C ATOM 2560 CB LEU 355 8.492 16.612 51.583 1.00 45.71 C ATOM 2561 CG LEU 355 8.280 16.007 50.182 1.00 45.71 C ATOM 2562 CD1 LEU 355 7.761 17.063 49.194 1.00 45.71 C ATOM 2563 CD2 LEU 355 9.544 15.288 49.684 1.00 45.71 C ATOM 2564 C LEU 355 9.365 16.317 53.855 1.00 45.71 C ATOM 2565 O LEU 355 10.503 16.661 54.161 1.00 45.71 O ATOM 2566 N GLY 356 8.317 16.553 54.664 1.00 66.12 N ATOM 2567 CA GLY 356 8.597 17.201 55.909 1.00 66.12 C ATOM 2568 C GLY 356 9.303 16.201 56.773 1.00 66.12 C ATOM 2569 O GLY 356 8.773 15.128 57.054 1.00 66.12 O ATOM 2570 N ASN 357 10.526 16.520 57.238 1.00250.87 N ATOM 2571 CA ASN 357 11.172 15.554 58.080 1.00250.87 C ATOM 2572 CB ASN 357 11.572 14.254 57.358 1.00250.87 C ATOM 2573 CG ASN 357 12.653 14.589 56.343 1.00250.87 C ATOM 2574 OD1 ASN 357 12.649 15.662 55.742 1.00250.87 O ATOM 2575 ND2 ASN 357 13.607 13.640 56.145 1.00250.87 N ATOM 2576 C ASN 357 12.418 16.153 58.648 1.00250.87 C ATOM 2577 O ASN 357 12.617 17.367 58.604 1.00250.87 O ATOM 2578 N ILE 358 13.288 15.288 59.211 1.00112.25 N ATOM 2579 CA ILE 358 14.522 15.705 59.814 1.00112.25 C ATOM 2580 CB ILE 358 14.738 15.175 61.203 1.00112.25 C ATOM 2581 CG2 ILE 358 13.613 15.712 62.101 1.00112.25 C ATOM 2582 CG1 ILE 358 14.840 13.641 61.185 1.00112.25 C ATOM 2583 CD1 ILE 358 15.352 13.053 62.500 1.00112.25 C ATOM 2584 C ILE 358 15.614 15.148 58.965 1.00112.25 C ATOM 2585 O ILE 358 15.395 14.216 58.192 1.00112.25 O ATOM 2586 N ILE 359 16.830 15.719 59.069 1.00 94.15 N ATOM 2587 CA ILE 359 17.859 15.280 58.178 1.00 94.15 C ATOM 2588 CB ILE 359 18.728 16.406 57.680 1.00 94.15 C ATOM 2589 CG2 ILE 359 17.836 17.367 56.877 1.00 94.15 C ATOM 2590 CG1 ILE 359 19.474 17.083 58.844 1.00 94.15 C ATOM 2591 CD1 ILE 359 20.589 18.022 58.393 1.00 94.15 C ATOM 2592 C ILE 359 18.751 14.278 58.842 1.00 94.15 C ATOM 2593 O ILE 359 19.385 14.543 59.863 1.00 94.15 O ATOM 2594 N VAL 360 18.768 13.059 58.271 1.00 71.79 N ATOM 2595 CA VAL 360 19.697 12.044 58.663 1.00 71.79 C ATOM 2596 CB VAL 360 19.070 10.847 59.317 1.00 71.79 C ATOM 2597 CG1 VAL 360 20.175 9.809 59.565 1.00 71.79 C ATOM 2598 CG2 VAL 360 18.359 11.297 60.606 1.00 71.79 C ATOM 2599 C VAL 360 20.277 11.597 57.362 1.00 71.79 C ATOM 2600 O VAL 360 19.542 11.205 56.457 1.00 71.79 O ATOM 2601 N ALA 361 21.614 11.648 57.212 1.00244.40 N ATOM 2602 CA ALA 361 22.141 11.300 55.925 1.00244.40 C ATOM 2603 CB ALA 361 22.877 12.461 55.233 1.00244.40 C ATOM 2604 C ALA 361 23.123 10.194 56.087 1.00244.40 C ATOM 2605 O ALA 361 23.908 10.176 57.034 1.00244.40 O ATOM 2606 N TRP 362 23.091 9.225 55.150 1.00300.50 N ATOM 2607 CA TRP 362 24.016 8.135 55.211 1.00300.50 C ATOM 2608 CB TRP 362 23.327 6.769 55.364 1.00300.50 C ATOM 2609 CG TRP 362 24.258 5.583 55.309 1.00300.50 C ATOM 2610 CD2 TRP 362 25.033 5.091 56.414 1.00300.50 C ATOM 2611 CD1 TRP 362 24.543 4.775 54.248 1.00300.50 C ATOM 2612 NE1 TRP 362 25.439 3.804 54.624 1.00300.50 N ATOM 2613 CE2 TRP 362 25.751 3.987 55.954 1.00300.50 C ATOM 2614 CE3 TRP 362 25.137 5.521 57.707 1.00300.50 C ATOM 2615 CZ2 TRP 362 26.587 3.294 56.781 1.00300.50 C ATOM 2616 CZ3 TRP 362 25.983 4.820 58.538 1.00300.50 C ATOM 2617 CH2 TRP 362 26.694 3.728 58.084 1.00300.50 C ATOM 2618 C TRP 362 24.806 8.115 53.944 1.00300.50 C ATOM 2619 O TRP 362 24.264 7.957 52.851 1.00300.50 O ATOM 2620 N ASN 363 26.131 8.290 54.079 1.00217.55 N ATOM 2621 CA ASN 363 27.037 8.260 52.971 1.00217.55 C ATOM 2622 CB ASN 363 27.180 9.606 52.239 1.00217.55 C ATOM 2623 CG ASN 363 25.934 9.812 51.393 1.00217.55 C ATOM 2624 OD1 ASN 363 25.073 10.631 51.712 1.00217.55 O ATOM 2625 ND2 ASN 363 25.833 9.042 50.277 1.00217.55 N ATOM 2626 C ASN 363 28.363 7.945 53.562 1.00217.55 C ATOM 2627 O ASN 363 28.481 7.789 54.777 1.00217.55 O ATOM 2628 N PRO 364 29.371 7.810 52.755 1.00105.85 N ATOM 2629 CA PRO 364 30.665 7.583 53.315 1.00105.85 C ATOM 2630 CD PRO 364 29.251 7.276 51.411 1.00105.85 C ATOM 2631 CB PRO 364 31.545 7.075 52.168 1.00105.85 C ATOM 2632 CG PRO 364 30.699 7.294 50.896 1.00105.85 C ATOM 2633 C PRO 364 31.079 8.876 53.925 1.00105.85 C ATOM 2634 O PRO 364 30.742 9.923 53.373 1.00105.85 O ATOM 2635 N ASN 365 31.795 8.845 55.060 1.00190.97 N ATOM 2636 CA ASN 365 32.164 10.095 55.646 1.00190.97 C ATOM 2637 CB ASN 365 32.214 10.056 57.185 1.00190.97 C ATOM 2638 CG ASN 365 32.149 11.483 57.710 1.00190.97 C ATOM 2639 OD1 ASN 365 32.994 12.318 57.390 1.00190.97 O ATOM 2640 ND2 ASN 365 31.104 11.778 58.533 1.00190.97 N ATOM 2641 C ASN 365 33.529 10.386 55.128 1.00190.97 C ATOM 2642 O ASN 365 34.425 9.548 55.214 1.00190.97 O ATOM 2643 N LEU 366 33.723 11.584 54.549 1.00264.65 N ATOM 2644 CA LEU 366 35.012 11.877 54.005 1.00264.65 C ATOM 2645 CB LEU 366 34.958 12.903 52.854 1.00264.65 C ATOM 2646 CG LEU 366 36.299 13.156 52.131 1.00264.65 C ATOM 2647 CD1 LEU 366 37.332 13.866 53.022 1.00264.65 C ATOM 2648 CD2 LEU 366 36.835 11.858 51.508 1.00264.65 C ATOM 2649 C LEU 366 35.808 12.466 55.114 1.00264.65 C ATOM 2650 O LEU 366 35.551 13.586 55.554 1.00264.65 O ATOM 2651 N TRP 367 36.794 11.706 55.617 1.00243.28 N ATOM 2652 CA TRP 367 37.609 12.240 56.659 1.00243.28 C ATOM 2653 CB TRP 367 37.350 11.586 58.027 1.00243.28 C ATOM 2654 CG TRP 367 38.197 12.129 59.151 1.00243.28 C ATOM 2655 CD2 TRP 367 39.376 11.479 59.647 1.00243.28 C ATOM 2656 CD1 TRP 367 38.033 13.259 59.898 1.00243.28 C ATOM 2657 NE1 TRP 367 39.042 13.357 60.826 1.00243.28 N ATOM 2658 CE2 TRP 367 39.875 12.267 60.683 1.00243.28 C ATOM 2659 CE3 TRP 367 39.991 10.319 59.271 1.00243.28 C ATOM 2660 CZ2 TRP 367 41.005 11.905 61.361 1.00243.28 C ATOM 2661 CZ3 TRP 367 41.129 9.957 59.955 1.00243.28 C ATOM 2662 CH2 TRP 367 41.626 10.737 60.981 1.00243.28 C ATOM 2663 C TRP 367 39.031 11.983 56.295 1.00243.28 C ATOM 2664 O TRP 367 39.436 10.839 56.091 1.00243.28 O ATOM 2665 N LYS 368 39.827 13.060 56.181 1.00250.42 N ATOM 2666 CA LYS 368 41.220 12.878 55.913 1.00250.42 C ATOM 2667 CB LYS 368 41.639 13.219 54.472 1.00250.42 C ATOM 2668 CG LYS 368 43.134 12.998 54.222 1.00250.42 C ATOM 2669 CD LYS 368 43.518 12.946 52.742 1.00250.42 C ATOM 2670 CE LYS 368 43.593 14.319 52.071 1.00250.42 C ATOM 2671 NZ LYS 368 43.960 14.161 50.646 1.00250.42 N ATOM 2672 C LYS 368 41.944 13.804 56.829 1.00250.42 C ATOM 2673 O LYS 368 41.673 15.004 56.856 1.00250.42 O ATOM 2674 N LYS 369 42.879 13.259 57.626 1.00254.22 N ATOM 2675 CA LYS 369 43.601 14.100 58.529 1.00254.22 C ATOM 2676 CB LYS 369 42.887 14.302 59.879 1.00254.22 C ATOM 2677 CG LYS 369 43.481 15.429 60.727 1.00254.22 C ATOM 2678 CD LYS 369 42.616 15.833 61.924 1.00254.22 C ATOM 2679 CE LYS 369 41.392 16.672 61.551 1.00254.22 C ATOM 2680 NZ LYS 369 40.280 15.788 61.138 1.00254.22 N ATOM 2681 C LYS 369 44.904 13.426 58.797 1.00254.22 C ATOM 2682 O LYS 369 45.230 12.412 58.182 1.00254.22 O ATOM 2683 N GLY 370 45.699 14.006 59.712 1.00105.19 N ATOM 2684 CA GLY 370 46.945 13.411 60.080 1.00105.19 C ATOM 2685 C GLY 370 48.033 14.166 59.403 1.00105.19 C ATOM 2686 O GLY 370 47.890 14.617 58.267 1.00105.19 O ATOM 2687 N THR 371 49.165 14.316 60.114 1.00276.65 N ATOM 2688 CA THR 371 50.297 15.002 59.577 1.00276.65 C ATOM 2689 CB THR 371 50.568 16.318 60.242 1.00276.65 C ATOM 2690 OG1 THR 371 50.887 16.124 61.613 1.00276.65 O ATOM 2691 CG2 THR 371 49.307 17.188 60.112 1.00276.65 C ATOM 2692 C THR 371 51.473 14.126 59.834 1.00276.65 C ATOM 2693 O THR 371 51.430 13.253 60.698 1.00276.65 O ATOM 2694 N ASN 372 52.558 14.328 59.066 1.00234.70 N ATOM 2695 CA ASN 372 53.719 13.517 59.265 1.00234.70 C ATOM 2696 CB ASN 372 54.286 12.909 57.970 1.00234.70 C ATOM 2697 CG ASN 372 55.373 11.909 58.346 1.00234.70 C ATOM 2698 OD1 ASN 372 55.233 11.149 59.303 1.00234.70 O ATOM 2699 ND2 ASN 372 56.491 11.906 57.573 1.00234.70 N ATOM 2700 C ASN 372 54.768 14.402 59.841 1.00234.70 C ATOM 2701 O ASN 372 54.783 15.608 59.604 1.00234.70 O ATOM 2702 N GLY 373 55.667 13.812 60.648 1.00109.66 N ATOM 2703 CA GLY 373 56.716 14.584 61.237 1.00109.66 C ATOM 2704 C GLY 373 56.265 14.997 62.596 1.00109.66 C ATOM 2705 O GLY 373 55.075 14.981 62.910 1.00109.66 O ATOM 2706 N TYR 374 57.236 15.391 63.436 1.00285.61 N ATOM 2707 CA TYR 374 56.949 15.806 64.773 1.00285.61 C ATOM 2708 CB TYR 374 57.740 14.987 65.813 1.00285.61 C ATOM 2709 CG TYR 374 57.390 15.413 67.198 1.00285.61 C ATOM 2710 CD1 TYR 374 56.220 14.988 67.785 1.00285.61 C ATOM 2711 CD2 TYR 374 58.242 16.212 67.924 1.00285.61 C ATOM 2712 CE1 TYR 374 55.896 15.367 69.067 1.00285.61 C ATOM 2713 CE2 TYR 374 57.925 16.595 69.207 1.00285.61 C ATOM 2714 CZ TYR 374 56.749 16.175 69.780 1.00285.61 C ATOM 2715 OH TYR 374 56.419 16.565 71.096 1.00285.61 O ATOM 2716 C TYR 374 57.397 17.226 64.832 1.00285.61 C ATOM 2717 O TYR 374 58.440 17.580 64.285 1.00285.61 O ATOM 2718 N PRO 375 56.619 18.065 65.448 1.00163.75 N ATOM 2719 CA PRO 375 57.000 19.447 65.487 1.00163.75 C ATOM 2720 CD PRO 375 55.175 17.901 65.420 1.00163.75 C ATOM 2721 CB PRO 375 55.744 20.216 65.892 1.00163.75 C ATOM 2722 CG PRO 375 54.599 19.328 65.377 1.00163.75 C ATOM 2723 C PRO 375 58.160 19.655 66.396 1.00163.75 C ATOM 2724 O PRO 375 58.328 18.887 67.342 1.00163.75 O ATOM 2725 N ILE 376 58.981 20.683 66.129 1.00101.85 N ATOM 2726 CA ILE 376 60.082 20.932 67.002 1.00101.85 C ATOM 2727 CB ILE 376 61.339 21.352 66.289 1.00101.85 C ATOM 2728 CG2 ILE 376 61.074 22.668 65.540 1.00101.85 C ATOM 2729 CG1 ILE 376 62.519 21.405 67.273 1.00101.85 C ATOM 2730 CD1 ILE 376 63.881 21.491 66.587 1.00101.85 C ATOM 2731 C ILE 376 59.633 22.030 67.902 1.00101.85 C ATOM 2732 O ILE 376 59.145 23.064 67.448 1.00101.85 O ATOM 2733 N PHE 377 59.751 21.816 69.223 1.00233.86 N ATOM 2734 CA PHE 377 59.260 22.823 70.109 1.00233.86 C ATOM 2735 CB PHE 377 59.334 22.420 71.593 1.00233.86 C ATOM 2736 CG PHE 377 58.547 23.404 72.387 1.00233.86 C ATOM 2737 CD1 PHE 377 57.175 23.316 72.429 1.00233.86 C ATOM 2738 CD2 PHE 377 59.175 24.401 73.100 1.00233.86 C ATOM 2739 CE1 PHE 377 56.439 24.214 73.163 1.00233.86 C ATOM 2740 CE2 PHE 377 58.443 25.303 73.836 1.00233.86 C ATOM 2741 CZ PHE 377 57.073 25.210 73.867 1.00233.86 C ATOM 2742 C PHE 377 60.110 24.027 69.898 1.00233.86 C ATOM 2743 O PHE 377 61.337 23.946 69.896 1.00233.86 O ATOM 2744 N GLN 378 59.463 25.186 69.689 1.00251.82 N ATOM 2745 CA GLN 378 60.213 26.384 69.480 1.00251.82 C ATOM 2746 CB GLN 378 59.396 27.499 68.803 1.00251.82 C ATOM 2747 CG GLN 378 60.181 28.790 68.569 1.00251.82 C ATOM 2748 CD GLN 378 59.249 29.776 67.878 1.00251.82 C ATOM 2749 OE1 GLN 378 58.492 29.400 66.984 1.00251.82 O ATOM 2750 NE2 GLN 378 59.295 31.068 68.302 1.00251.82 N ATOM 2751 C GLN 378 60.631 26.860 70.827 1.00251.82 C ATOM 2752 O GLN 378 59.834 26.882 71.762 1.00251.82 O ATOM 2753 N TRP 379 61.913 27.239 70.964 1.00290.03 N ATOM 2754 CA TRP 379 62.365 27.689 72.242 1.00290.03 C ATOM 2755 CB TRP 379 63.898 27.698 72.371 1.00290.03 C ATOM 2756 CG TRP 379 64.391 28.053 73.751 1.00290.03 C ATOM 2757 CD2 TRP 379 64.373 27.139 74.858 1.00290.03 C ATOM 2758 CD1 TRP 379 64.891 29.229 74.228 1.00290.03 C ATOM 2759 NE1 TRP 379 65.193 29.103 75.563 1.00290.03 N ATOM 2760 CE2 TRP 379 64.876 27.822 75.964 1.00290.03 C ATOM 2761 CE3 TRP 379 63.965 25.838 74.946 1.00290.03 C ATOM 2762 CZ2 TRP 379 64.980 27.211 77.181 1.00290.03 C ATOM 2763 CZ3 TRP 379 64.076 25.223 76.173 1.00290.03 C ATOM 2764 CH2 TRP 379 64.574 25.897 77.268 1.00290.03 C ATOM 2765 C TRP 379 61.833 29.072 72.412 1.00290.03 C ATOM 2766 O TRP 379 61.820 29.862 71.470 1.00290.03 O ATOM 2767 N SER 380 61.357 29.395 73.628 1.00148.48 N ATOM 2768 CA SER 380 60.778 30.687 73.835 1.00148.48 C ATOM 2769 CB SER 380 59.969 30.808 75.140 1.00148.48 C ATOM 2770 OG SER 380 59.424 32.114 75.265 1.00148.48 O ATOM 2771 C SER 380 61.880 31.684 73.885 1.00148.48 C ATOM 2772 O SER 380 63.036 31.349 74.138 1.00148.48 O ATOM 2773 N GLU 381 61.530 32.955 73.618 1.00 44.75 N ATOM 2774 CA GLU 381 62.496 34.005 73.646 1.00 44.75 C ATOM 2775 CB GLU 381 61.893 35.360 73.245 1.00 44.75 C ATOM 2776 CG GLU 381 61.371 35.371 71.805 1.00 44.75 C ATOM 2777 CD GLU 381 60.737 36.728 71.541 1.00 44.75 C ATOM 2778 OE1 GLU 381 60.811 37.596 72.450 1.00 44.75 O ATOM 2779 OE2 GLU 381 60.168 36.913 70.432 1.00 44.75 O ATOM 2780 C GLU 381 62.971 34.105 75.089 1.00 44.75 C ATOM 2781 O GLU 381 64.173 33.821 75.337 1.00 44.75 O ATOM 2782 OXT GLU 381 62.137 34.460 75.964 1.00 44.75 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.61 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 94.83 40.9 22 100.0 22 ARMSMC SURFACE . . . . . . . . 85.67 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 107.19 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.77 23.1 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 102.76 20.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 102.14 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 103.63 17.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 75.35 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 47.25 68.2 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 33.46 75.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 33.32 85.7 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 49.52 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 5.97 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.04 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 71.15 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 42.24 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 72.04 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.88 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 68.88 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 68.88 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 18.06 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 18.06 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.5825 CRMSCA SECONDARY STRUCTURE . . 17.74 11 100.0 11 CRMSCA SURFACE . . . . . . . . 18.19 26 100.0 26 CRMSCA BURIED . . . . . . . . 17.36 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 18.05 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 17.60 54 100.0 54 CRMSMC SURFACE . . . . . . . . 18.14 129 100.0 129 CRMSMC BURIED . . . . . . . . 17.58 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 19.15 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 19.29 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 17.03 41 100.0 41 CRMSSC SURFACE . . . . . . . . 19.32 120 100.0 120 CRMSSC BURIED . . . . . . . . 16.93 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.62 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 17.34 85 100.0 85 CRMSALL SURFACE . . . . . . . . 18.77 224 100.0 224 CRMSALL BURIED . . . . . . . . 17.40 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 151.201 0.745 0.785 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 107.052 0.647 0.711 11 100.0 11 ERRCA SURFACE . . . . . . . . 164.247 0.754 0.794 26 100.0 26 ERRCA BURIED . . . . . . . . 83.363 0.694 0.738 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.661 0.746 0.784 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 108.258 0.650 0.712 54 100.0 54 ERRMC SURFACE . . . . . . . . 164.839 0.755 0.792 129 100.0 129 ERRMC BURIED . . . . . . . . 84.359 0.694 0.738 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 178.902 0.773 0.806 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 179.565 0.772 0.806 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 133.635 0.690 0.745 41 100.0 41 ERRSC SURFACE . . . . . . . . 186.152 0.777 0.810 120 100.0 120 ERRSC BURIED . . . . . . . . 91.905 0.727 0.761 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 165.372 0.759 0.794 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 119.906 0.668 0.727 85 100.0 85 ERRALL SURFACE . . . . . . . . 176.002 0.767 0.801 224 100.0 224 ERRALL BURIED . . . . . . . . 86.000 0.702 0.743 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 1 6 31 31 DISTCA CA (P) 0.00 0.00 3.23 3.23 19.35 31 DISTCA CA (RMS) 0.00 0.00 2.44 2.44 7.06 DISTCA ALL (N) 0 0 3 6 41 254 254 DISTALL ALL (P) 0.00 0.00 1.18 2.36 16.14 254 DISTALL ALL (RMS) 0.00 0.00 2.50 3.06 7.01 DISTALL END of the results output