####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 296), selected 31 , name T0537TS295_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS295_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 360 - 374 4.88 14.73 LCS_AVERAGE: 43.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 373 - 381 1.77 16.27 LCS_AVERAGE: 22.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.26 20.63 LONGEST_CONTINUOUS_SEGMENT: 6 362 - 367 0.67 15.31 LCS_AVERAGE: 15.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 6 6 6 6 6 6 8 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT A 352 A 352 6 6 13 6 6 6 6 6 6 8 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT E 353 E 353 6 6 13 6 6 6 6 6 6 8 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT E 354 E 354 6 6 13 6 6 6 6 6 6 6 8 10 11 15 17 17 19 19 19 20 21 22 22 LCS_GDT L 355 L 355 6 6 13 6 6 6 6 6 6 6 6 10 11 12 17 17 19 19 19 20 21 22 22 LCS_GDT G 356 G 356 6 6 13 6 6 6 6 6 6 6 8 11 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT N 357 N 357 3 4 13 3 3 4 4 4 6 8 9 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT I 358 I 358 3 4 13 3 3 4 4 4 4 5 7 10 13 15 17 17 19 19 19 20 21 22 22 LCS_GDT I 359 I 359 3 3 13 3 3 3 4 4 6 8 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT V 360 V 360 3 3 15 1 3 4 4 5 6 9 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT A 361 A 361 3 8 15 1 3 4 4 6 7 9 9 10 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT W 362 W 362 6 8 15 3 6 6 7 7 7 9 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT N 363 N 363 6 8 15 5 6 6 7 7 7 9 9 9 11 13 15 16 19 19 19 20 21 22 22 LCS_GDT P 364 P 364 6 8 15 5 6 6 7 7 7 9 9 9 11 12 14 16 17 18 19 20 21 22 22 LCS_GDT N 365 N 365 6 8 15 5 6 6 7 7 7 9 9 9 11 12 14 16 17 18 19 20 21 22 22 LCS_GDT L 366 L 366 6 8 15 5 6 6 7 7 7 9 9 9 11 12 14 16 17 18 19 20 21 22 22 LCS_GDT W 367 W 367 6 8 15 5 6 6 7 7 7 9 9 9 10 11 14 16 17 18 18 20 20 22 22 LCS_GDT K 368 K 368 4 8 15 0 3 5 7 7 7 9 9 9 10 11 14 16 17 18 18 18 18 19 20 LCS_GDT K 369 K 369 4 5 15 1 3 4 4 5 5 5 7 9 10 11 14 14 17 18 18 18 18 19 20 LCS_GDT G 370 G 370 4 5 15 3 3 4 4 5 5 9 9 9 10 11 14 16 17 18 18 18 18 19 20 LCS_GDT T 371 T 371 4 5 15 3 3 4 4 5 5 6 6 6 9 11 14 16 17 18 18 18 18 19 20 LCS_GDT N 372 N 372 3 6 15 3 3 4 4 5 6 7 8 9 10 11 14 16 17 18 18 18 18 19 20 LCS_GDT G 373 G 373 4 9 15 4 4 5 7 8 9 9 10 10 10 11 14 15 17 18 18 18 18 19 20 LCS_GDT Y 374 Y 374 4 9 15 4 5 6 7 8 9 9 10 10 10 11 14 16 17 18 18 18 18 19 20 LCS_GDT P 375 P 375 4 9 11 4 5 6 7 8 9 9 10 10 10 11 13 16 17 18 19 20 21 22 22 LCS_GDT I 376 I 376 4 9 11 4 4 4 5 7 9 9 10 10 11 13 15 17 19 19 19 20 21 22 22 LCS_GDT F 377 F 377 5 9 11 4 4 5 5 8 9 9 10 12 14 15 17 17 19 19 19 20 21 22 22 LCS_GDT Q 378 Q 378 5 9 11 4 4 6 7 8 9 9 10 12 14 15 17 17 19 19 19 19 19 22 22 LCS_GDT W 379 W 379 5 9 11 4 5 6 7 8 9 9 10 12 14 15 17 17 19 19 19 19 19 19 21 LCS_GDT S 380 S 380 5 9 11 4 5 6 7 8 9 9 10 12 14 15 17 17 19 19 19 19 21 22 22 LCS_GDT E 381 E 381 5 9 11 3 5 6 7 8 9 9 10 12 14 15 17 17 19 19 19 19 21 22 22 LCS_AVERAGE LCS_A: 27.12 ( 15.30 22.48 43.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 6 7 8 9 9 10 12 14 15 17 17 19 19 19 20 21 22 22 GDT PERCENT_AT 19.35 19.35 19.35 22.58 25.81 29.03 29.03 32.26 38.71 45.16 48.39 54.84 54.84 61.29 61.29 61.29 64.52 67.74 70.97 70.97 GDT RMS_LOCAL 0.26 0.26 0.26 1.12 1.47 1.77 1.77 2.35 3.29 3.75 3.85 4.30 4.30 4.82 4.82 4.82 6.09 6.21 6.36 6.36 GDT RMS_ALL_AT 20.63 20.63 20.63 16.10 16.72 16.27 16.27 14.99 13.55 13.40 14.04 13.73 13.73 13.01 13.01 13.01 10.54 10.91 11.16 11.16 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 26.866 0 0.586 0.950 26.866 0.000 0.000 LGA A 352 A 352 23.385 0 0.030 0.038 24.693 0.000 0.000 LGA E 353 E 353 22.911 0 0.027 0.896 23.501 0.000 0.000 LGA E 354 E 354 24.997 0 0.016 0.182 29.334 0.000 0.000 LGA L 355 L 355 23.000 0 0.081 0.193 25.163 0.000 0.000 LGA G 356 G 356 19.427 0 0.312 0.312 20.959 0.000 0.000 LGA N 357 N 357 14.030 0 0.577 0.534 16.769 0.000 0.000 LGA I 358 I 358 11.110 0 0.596 0.612 16.005 3.214 1.607 LGA I 359 I 359 8.850 0 0.586 0.761 14.478 6.667 3.333 LGA V 360 V 360 3.200 0 0.618 0.641 5.299 34.762 50.204 LGA A 361 A 361 7.538 0 0.678 0.613 10.501 7.500 6.571 LGA W 362 W 362 12.048 0 0.625 1.013 15.574 0.000 3.027 LGA N 363 N 363 17.164 0 0.117 0.254 23.822 0.000 0.000 LGA P 364 P 364 17.228 0 0.138 0.150 19.873 0.000 0.000 LGA N 365 N 365 23.642 0 0.214 0.196 27.481 0.000 0.000 LGA L 366 L 366 21.012 0 0.034 1.425 22.264 0.000 0.000 LGA W 367 W 367 16.138 0 0.567 1.227 17.573 0.000 0.000 LGA K 368 K 368 18.810 0 0.615 1.026 27.653 0.000 0.000 LGA K 369 K 369 16.179 0 0.660 0.546 18.356 0.000 0.000 LGA G 370 G 370 15.704 0 0.671 0.671 15.704 0.000 0.000 LGA T 371 T 371 13.301 0 0.645 0.990 15.331 0.000 0.000 LGA N 372 N 372 9.707 0 0.097 1.220 12.599 6.786 3.393 LGA G 373 G 373 2.442 0 0.521 0.521 5.268 57.381 57.381 LGA Y 374 Y 374 0.714 0 0.080 0.262 6.189 88.452 53.135 LGA P 375 P 375 1.723 0 0.063 0.085 4.885 79.762 62.449 LGA I 376 I 376 1.917 0 0.239 1.308 6.823 79.762 50.298 LGA F 377 F 377 2.581 0 0.478 0.997 8.880 68.929 33.117 LGA Q 378 Q 378 1.910 0 0.000 1.186 7.328 66.905 44.074 LGA W 379 W 379 2.558 0 0.271 1.123 4.493 73.452 58.639 LGA S 380 S 380 1.579 0 0.013 0.698 4.830 79.286 68.889 LGA E 381 E 381 3.516 0 0.643 1.061 8.389 44.167 30.952 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 9.918 9.918 11.339 22.485 17.002 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.35 33.871 32.161 0.409 LGA_LOCAL RMSD: 2.347 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.990 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.918 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.595766 * X + 0.778346 * Y + 0.198091 * Z + 45.016094 Y_new = -0.802233 * X + -0.564860 * Y + -0.193276 * Z + 52.129860 Z_new = -0.038542 * X + -0.274062 * Y + 0.960939 * Z + 47.668720 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.209567 0.038552 -0.277826 [DEG: -126.5989 2.2089 -15.9183 ] ZXZ: 0.797699 0.280420 -3.001876 [DEG: 45.7048 16.0669 -171.9948 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS295_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS295_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.35 32.161 9.92 REMARK ---------------------------------------------------------- MOLECULE T0537TS295_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 5887 H SER 351 21.442 7.828 69.658 1.00 1.00 H ATOM 5889 N SER 351 22.353 8.030 69.685 1.00 1.00 N ATOM 5891 CA SER 351 23.295 7.145 69.013 1.00 1.00 C ATOM 5893 CB SER 351 22.562 5.907 68.487 1.00 1.00 C ATOM 5895 C SER 351 23.943 7.882 67.847 1.00 1.00 C ATOM 5897 O SER 351 25.161 7.834 67.669 1.00 1.00 O ATOM 5899 OG SER 351 21.996 5.172 69.559 1.00 1.00 O ATOM 5901 H ALA 352 22.236 8.723 67.358 1.00 1.00 H ATOM 5903 N ALA 352 23.135 8.644 67.117 1.00 1.00 N ATOM 5905 CA ALA 352 23.640 9.426 65.995 1.00 1.00 C ATOM 5907 CB ALA 352 22.485 10.124 65.284 1.00 1.00 C ATOM 5909 C ALA 352 24.641 10.464 66.484 1.00 1.00 C ATOM 5911 O ALA 352 25.715 10.618 65.901 1.00 1.00 O ATOM 5913 H GLU 353 23.549 10.874 68.077 1.00 1.00 H ATOM 5915 N GLU 353 24.335 11.109 67.606 1.00 1.00 N ATOM 5917 CA GLU 353 25.234 12.109 68.167 1.00 1.00 C ATOM 5919 CB GLU 353 24.613 12.734 69.420 1.00 1.00 C ATOM 5921 C GLU 353 26.572 11.472 68.516 1.00 1.00 C ATOM 5923 O GLU 353 27.631 12.061 68.287 1.00 1.00 O ATOM 5925 CG GLU 353 23.426 13.639 69.127 1.00 1.00 C ATOM 5927 CD GLU 353 22.718 14.121 70.383 1.00 1.00 C ATOM 5929 OE1 GLU 353 23.108 13.690 71.492 1.00 1.00 O ATOM 5931 OE2 GLU 353 21.764 14.921 70.262 1.00 1.00 O ATOM 5933 H GLU 354 25.691 9.817 69.138 1.00 1.00 H ATOM 5935 N GLU 354 26.526 10.241 69.017 1.00 1.00 N ATOM 5937 CA GLU 354 27.748 9.501 69.312 1.00 1.00 C ATOM 5939 CB GLU 354 27.399 8.210 70.058 1.00 1.00 C ATOM 5941 C GLU 354 28.493 9.162 68.026 1.00 1.00 C ATOM 5943 O GLU 354 29.712 9.327 67.942 1.00 1.00 O ATOM 5945 CG GLU 354 26.781 8.444 71.430 1.00 1.00 C ATOM 5947 CD GLU 354 26.308 7.165 72.098 1.00 1.00 C ATOM 5949 OE1 GLU 354 26.447 6.083 71.486 1.00 1.00 O ATOM 5951 OE2 GLU 354 25.786 7.241 73.233 1.00 1.00 O ATOM 5953 H LEU 355 26.811 8.761 67.080 1.00 1.00 H ATOM 5955 N LEU 355 27.753 8.729 67.010 1.00 1.00 N ATOM 5957 CA LEU 355 28.350 8.281 65.757 1.00 1.00 C ATOM 5959 CB LEU 355 27.383 7.359 65.007 1.00 1.00 C ATOM 5961 C LEU 355 28.760 9.455 64.875 1.00 1.00 C ATOM 5963 O LEU 355 29.646 9.321 64.028 1.00 1.00 O ATOM 5965 CG LEU 355 26.988 6.070 65.733 1.00 1.00 C ATOM 5967 CD1 LEU 355 25.958 5.297 64.921 1.00 1.00 C ATOM 5969 CD2 LEU 355 28.222 5.214 65.988 1.00 1.00 C ATOM 5971 H GLY 356 27.441 10.651 65.706 1.00 1.00 H ATOM 5973 N GLY 356 28.093 10.593 65.043 1.00 1.00 N ATOM 5975 CA GLY 356 28.308 11.727 64.160 1.00 1.00 C ATOM 5977 C GLY 356 27.330 11.749 62.998 1.00 1.00 C ATOM 5979 O GLY 356 27.561 12.428 61.995 1.00 1.00 O ATOM 5981 H ASN 357 26.122 10.489 63.898 1.00 1.00 H ATOM 5983 N ASN 357 26.266 10.958 63.097 1.00 1.00 N ATOM 5985 CA ASN 357 25.293 10.843 62.015 1.00 1.00 C ATOM 5987 CB ASN 357 24.562 9.498 62.079 1.00 1.00 C ATOM 5989 C ASN 357 24.286 11.987 62.025 1.00 1.00 C ATOM 5991 O ASN 357 24.030 12.591 63.068 1.00 1.00 O ATOM 5993 CG ASN 357 25.455 8.333 61.698 1.00 1.00 C ATOM 5995 ND2 ASN 357 25.119 7.143 62.179 1.00 1.00 N ATOM 5997 HD21 ASN 357 24.352 7.077 62.722 1.00 1.00 H ATOM 5999 HD22 ASN 357 25.647 6.391 61.969 1.00 1.00 H ATOM 6001 OD1 ASN 357 26.426 8.498 60.954 1.00 1.00 O ATOM 6003 H ILE 358 23.838 11.686 60.132 1.00 1.00 H ATOM 6005 N ILE 358 23.668 12.238 60.875 1.00 1.00 N ATOM 6007 CA ILE 358 22.727 13.344 60.734 1.00 1.00 C ATOM 6009 CB ILE 358 22.996 14.139 59.435 1.00 1.00 C ATOM 6011 C ILE 358 21.299 12.805 60.735 1.00 1.00 C ATOM 6013 O ILE 358 20.970 11.897 59.967 1.00 1.00 O ATOM 6015 CG1 ILE 358 24.377 14.799 59.496 1.00 1.00 C ATOM 6017 CD1 ILE 358 24.831 15.404 58.178 1.00 1.00 C ATOM 6019 CG2 ILE 358 21.902 15.179 59.199 1.00 1.00 C ATOM 6021 H ILE 359 20.757 14.062 62.150 1.00 1.00 H ATOM 6023 N ILE 359 20.465 13.342 61.620 1.00 1.00 N ATOM 6025 CA ILE 359 19.100 12.852 61.781 1.00 1.00 C ATOM 6027 CB ILE 359 18.792 12.504 63.256 1.00 1.00 C ATOM 6029 C ILE 359 18.102 13.895 61.290 1.00 1.00 C ATOM 6031 O ILE 359 18.185 15.068 61.660 1.00 1.00 O ATOM 6033 CG1 ILE 359 19.764 11.432 63.756 1.00 1.00 C ATOM 6035 CD1 ILE 359 19.708 10.138 62.961 1.00 1.00 C ATOM 6037 CG2 ILE 359 17.347 12.030 63.404 1.00 1.00 C ATOM 6039 H VAL 360 17.259 12.613 60.055 1.00 1.00 H ATOM 6041 N VAL 360 17.193 13.476 60.416 1.00 1.00 N ATOM 6043 CA VAL 360 16.103 14.345 59.986 1.00 1.00 C ATOM 6045 CB VAL 360 16.161 14.601 58.463 1.00 1.00 C ATOM 6047 C VAL 360 14.775 13.692 60.357 1.00 1.00 C ATOM 6049 O VAL 360 14.501 12.560 59.948 1.00 1.00 O ATOM 6051 CG1 VAL 360 15.030 15.529 58.035 1.00 1.00 C ATOM 6053 CG2 VAL 360 17.511 15.191 58.072 1.00 1.00 C ATOM 6055 H ALA 361 14.241 15.208 61.489 1.00 1.00 H ATOM 6057 N ALA 361 13.976 14.369 61.175 1.00 1.00 N ATOM 6059 CA ALA 361 12.674 13.838 61.565 1.00 1.00 C ATOM 6061 CB ALA 361 12.153 14.563 62.802 1.00 1.00 C ATOM 6063 C ALA 361 11.674 13.964 60.420 1.00 1.00 C ATOM 6065 O ALA 361 11.659 14.973 59.711 1.00 1.00 O ATOM 6067 H TRP 362 11.000 12.119 60.692 1.00 1.00 H ATOM 6069 N TRP 362 10.876 12.923 60.201 1.00 1.00 N ATOM 6071 CA TRP 362 9.822 12.982 59.195 1.00 1.00 C ATOM 6073 CB TRP 362 10.190 12.131 57.974 1.00 1.00 C ATOM 6075 C TRP 362 8.494 12.492 59.758 1.00 1.00 C ATOM 6077 O TRP 362 8.429 11.416 60.356 1.00 1.00 O ATOM 6079 CG TRP 362 11.361 12.647 57.190 1.00 1.00 C ATOM 6081 CD1 TRP 362 12.676 12.316 57.362 1.00 1.00 C ATOM 6083 NE1 TRP 362 13.449 12.970 56.432 1.00 1.00 N ATOM 6085 HE1 TRP 362 14.395 12.904 56.362 1.00 1.00 H ATOM 6087 CD2 TRP 362 11.320 13.610 56.131 1.00 1.00 C ATOM 6089 CE2 TRP 362 12.641 13.758 55.654 1.00 1.00 C ATOM 6091 CE3 TRP 362 10.288 14.319 55.504 1.00 1.00 C ATOM 6093 CZ3 TRP 362 10.601 15.129 54.417 1.00 1.00 C ATOM 6095 CH2 TRP 362 11.919 15.225 53.941 1.00 1.00 H ATOM 6097 CZ2 TRP 362 12.947 14.536 54.534 1.00 1.00 C ATOM 6099 H ASN 363 7.530 14.055 59.048 1.00 1.00 H ATOM 6101 N ASN 363 7.421 13.233 59.492 1.00 1.00 N ATOM 6103 CA ASN 363 6.081 12.781 59.851 1.00 1.00 C ATOM 6105 CB ASN 363 5.086 13.938 59.715 1.00 1.00 C ATOM 6107 C ASN 363 5.673 11.635 58.935 1.00 1.00 C ATOM 6109 O ASN 363 5.593 11.814 57.718 1.00 1.00 O ATOM 6111 CG ASN 363 3.685 13.582 60.176 1.00 1.00 C ATOM 6113 ND2 ASN 363 2.919 14.589 60.579 1.00 1.00 N ATOM 6115 HD21 ASN 363 3.275 15.461 60.561 1.00 1.00 H ATOM 6117 HD22 ASN 363 2.042 14.415 60.876 1.00 1.00 H ATOM 6119 OD1 ASN 363 3.285 12.415 60.160 1.00 1.00 O ATOM 6121 N PRO 364 5.362 10.461 59.490 1.00 1.00 N ATOM 6123 CA PRO 364 4.975 9.314 58.670 1.00 1.00 C ATOM 6125 CB PRO 364 4.458 8.308 59.697 1.00 1.00 C ATOM 6127 C PRO 364 3.903 9.675 57.649 1.00 1.00 C ATOM 6129 O PRO 364 3.970 9.245 56.495 1.00 1.00 O ATOM 6131 CG PRO 364 5.268 8.616 60.920 1.00 1.00 C ATOM 6133 CD PRO 364 5.384 10.124 60.926 1.00 1.00 C ATOM 6135 H ASN 365 2.985 10.880 58.912 1.00 1.00 H ATOM 6137 N ASN 365 2.968 10.535 58.038 1.00 1.00 N ATOM 6139 CA ASN 365 1.930 10.981 57.114 1.00 1.00 C ATOM 6141 CB ASN 365 0.916 11.863 57.849 1.00 1.00 C ATOM 6143 C ASN 365 2.543 11.756 55.954 1.00 1.00 C ATOM 6145 O ASN 365 2.346 11.399 54.791 1.00 1.00 O ATOM 6147 CG ASN 365 0.052 11.074 58.813 1.00 1.00 C ATOM 6149 ND2 ASN 365 -0.526 11.758 59.792 1.00 1.00 N ATOM 6151 HD21 ASN 365 -0.377 12.687 59.843 1.00 1.00 H ATOM 6153 HD22 ASN 365 -1.073 11.307 60.414 1.00 1.00 H ATOM 6155 OD1 ASN 365 -0.083 9.854 58.688 1.00 1.00 O ATOM 6157 H LEU 366 3.614 12.875 57.175 1.00 1.00 H ATOM 6159 N LEU 366 3.370 12.747 56.272 1.00 1.00 N ATOM 6161 CA LEU 366 3.983 13.583 55.245 1.00 1.00 C ATOM 6163 CB LEU 366 4.737 14.751 55.888 1.00 1.00 C ATOM 6165 C LEU 366 4.940 12.749 54.402 1.00 1.00 C ATOM 6167 O LEU 366 4.969 12.872 53.176 1.00 1.00 O ATOM 6169 CG LEU 366 3.878 15.805 56.592 1.00 1.00 C ATOM 6171 CD1 LEU 366 4.765 16.819 57.303 1.00 1.00 C ATOM 6173 CD2 LEU 366 2.971 16.501 55.585 1.00 1.00 C ATOM 6175 H TRP 367 5.550 11.747 55.992 1.00 1.00 H ATOM 6177 N TRP 367 5.656 11.837 55.053 1.00 1.00 N ATOM 6179 CA TRP 367 6.572 10.944 54.354 1.00 1.00 C ATOM 6181 CB TRP 367 7.249 10.011 55.366 1.00 1.00 C ATOM 6183 C TRP 367 5.810 10.118 53.323 1.00 1.00 C ATOM 6185 O TRP 367 6.211 10.046 52.159 1.00 1.00 O ATOM 6187 CG TRP 367 8.270 9.087 54.770 1.00 1.00 C ATOM 6189 CD1 TRP 367 8.125 7.750 54.519 1.00 1.00 C ATOM 6191 NE1 TRP 367 9.290 7.242 53.994 1.00 1.00 N ATOM 6193 HE1 TRP 367 9.429 6.335 53.750 1.00 1.00 H ATOM 6195 CD2 TRP 367 9.604 9.430 54.380 1.00 1.00 C ATOM 6197 CE2 TRP 367 10.218 8.247 53.913 1.00 1.00 C ATOM 6199 CE3 TRP 367 10.354 10.612 54.423 1.00 1.00 C ATOM 6201 CZ3 TRP 367 11.686 10.572 54.023 1.00 1.00 C ATOM 6203 CH2 TRP 367 12.270 9.378 53.569 1.00 1.00 H ATOM 6205 CZ2 TRP 367 11.549 8.212 53.490 1.00 1.00 C ATOM 6207 H LYS 368 4.368 9.720 54.614 1.00 1.00 H ATOM 6209 N LYS 368 4.668 9.569 53.726 1.00 1.00 N ATOM 6211 CA LYS 368 3.825 8.807 52.810 1.00 1.00 C ATOM 6213 CB LYS 368 2.683 8.128 53.570 1.00 1.00 C ATOM 6215 C LYS 368 3.258 9.712 51.720 1.00 1.00 C ATOM 6217 O LYS 368 3.180 9.319 50.555 1.00 1.00 O ATOM 6219 CG LYS 368 3.133 6.977 54.458 1.00 1.00 C ATOM 6221 CD LYS 368 1.960 6.367 55.213 1.00 1.00 C ATOM 6223 CE LYS 368 2.406 5.222 56.112 1.00 1.00 C ATOM 6225 NZ LYS 368 1.264 4.640 56.875 1.00 1.00 N ATOM 6227 H LYS 369 3.018 11.198 52.999 1.00 1.00 H ATOM 6229 N LYS 369 2.905 10.937 52.094 1.00 1.00 N ATOM 6231 CA LYS 369 2.421 11.922 51.135 1.00 1.00 C ATOM 6233 CB LYS 369 2.003 13.204 51.860 1.00 1.00 C ATOM 6235 C LYS 369 3.507 12.246 50.114 1.00 1.00 C ATOM 6237 O LYS 369 3.211 12.642 48.985 1.00 1.00 O ATOM 6239 CG LYS 369 0.752 13.056 52.713 1.00 1.00 C ATOM 6241 CD LYS 369 0.439 14.342 53.465 1.00 1.00 C ATOM 6243 CE LYS 369 -0.772 14.179 54.373 1.00 1.00 C ATOM 6245 NZ LYS 369 -1.052 15.423 55.149 1.00 1.00 N ATOM 6247 H GLY 370 4.940 11.796 51.385 1.00 1.00 H ATOM 6249 N GLY 370 4.763 12.112 50.526 1.00 1.00 N ATOM 6251 CA GLY 370 5.873 12.512 49.678 1.00 1.00 C ATOM 6253 C GLY 370 6.304 13.945 49.929 1.00 1.00 C ATOM 6255 O GLY 370 7.152 14.481 49.211 1.00 1.00 O ATOM 6257 H THR 371 5.187 14.086 51.551 1.00 1.00 H ATOM 6259 N THR 371 5.758 14.557 50.976 1.00 1.00 N ATOM 6261 CA THR 371 6.058 15.952 51.274 1.00 1.00 C ATOM 6263 CB THR 371 5.084 16.506 52.336 1.00 1.00 C ATOM 6265 C THR 371 7.486 16.087 51.788 1.00 1.00 C ATOM 6267 O THR 371 7.879 15.396 52.731 1.00 1.00 O ATOM 6269 CG2 THR 371 5.399 17.959 52.667 1.00 1.00 C ATOM 6271 OG1 THR 371 3.745 16.421 51.834 1.00 1.00 O ATOM 6273 H ASN 372 7.928 17.439 50.423 1.00 1.00 H ATOM 6275 N ASN 372 8.271 16.950 51.150 1.00 1.00 N ATOM 6277 CA ASN 372 9.673 17.115 51.518 1.00 1.00 C ATOM 6279 CB ASN 372 10.546 17.203 50.261 1.00 1.00 C ATOM 6281 C ASN 372 9.881 18.347 52.389 1.00 1.00 C ATOM 6283 O ASN 372 10.995 18.603 52.855 1.00 1.00 O ATOM 6285 CG ASN 372 10.569 15.900 49.484 1.00 1.00 C ATOM 6287 ND2 ASN 372 10.713 15.994 48.167 1.00 1.00 N ATOM 6289 HD21 ASN 372 10.794 16.851 47.783 1.00 1.00 H ATOM 6291 HD22 ASN 372 10.724 15.209 47.645 1.00 1.00 H ATOM 6293 OD1 ASN 372 10.447 14.816 50.062 1.00 1.00 O ATOM 6295 H GLY 373 7.991 18.867 52.256 1.00 1.00 H ATOM 6297 N GLY 373 8.811 19.095 52.636 1.00 1.00 N ATOM 6299 CA GLY 373 8.897 20.259 53.501 1.00 1.00 C ATOM 6301 C GLY 373 9.968 21.238 53.059 1.00 1.00 C ATOM 6303 O GLY 373 10.015 21.631 51.891 1.00 1.00 O ATOM 6305 H TYR 374 10.657 21.438 54.897 1.00 1.00 H ATOM 6307 N TYR 374 10.811 21.667 53.994 1.00 1.00 N ATOM 6309 CA TYR 374 11.953 22.510 53.661 1.00 1.00 C ATOM 6311 CB TYR 374 11.945 23.797 54.496 1.00 1.00 C ATOM 6313 C TYR 374 13.262 21.756 53.855 1.00 1.00 C ATOM 6315 O TYR 374 13.411 20.994 54.812 1.00 1.00 O ATOM 6317 CG TYR 374 10.916 24.806 54.040 1.00 1.00 C ATOM 6319 CD1 TYR 374 9.608 24.767 54.521 1.00 1.00 C ATOM 6321 CE1 TYR 374 8.666 25.707 54.119 1.00 1.00 C ATOM 6323 CZ TYR 374 9.038 26.716 53.249 1.00 1.00 C ATOM 6325 CD2 TYR 374 11.255 25.809 53.134 1.00 1.00 C ATOM 6327 CE2 TYR 374 10.321 26.757 52.729 1.00 1.00 C ATOM 6329 OH TYR 374 8.116 27.665 52.867 1.00 1.00 H ATOM 6331 N PRO 375 14.205 21.910 52.921 1.00 1.00 N ATOM 6333 CA PRO 375 15.500 21.232 53.005 1.00 1.00 C ATOM 6335 CB PRO 375 16.220 21.639 51.718 1.00 1.00 C ATOM 6337 C PRO 375 16.294 21.644 54.239 1.00 1.00 C ATOM 6339 O PRO 375 15.996 22.663 54.866 1.00 1.00 O ATOM 6341 CG PRO 375 15.115 22.032 50.783 1.00 1.00 C ATOM 6343 CD PRO 375 14.088 22.691 51.676 1.00 1.00 C ATOM 6345 H ILE 376 17.416 20.022 54.158 1.00 1.00 H ATOM 6347 N ILE 376 17.261 20.822 54.629 1.00 1.00 N ATOM 6349 CA ILE 376 18.112 21.157 55.764 1.00 1.00 C ATOM 6351 CB ILE 376 18.836 19.903 56.305 1.00 1.00 C ATOM 6353 C ILE 376 19.138 22.194 55.317 1.00 1.00 C ATOM 6355 O ILE 376 19.891 21.965 54.368 1.00 1.00 O ATOM 6357 CG1 ILE 376 17.818 18.811 56.654 1.00 1.00 C ATOM 6359 CD1 ILE 376 16.814 19.220 57.718 1.00 1.00 C ATOM 6361 CG2 ILE 376 19.682 20.258 57.527 1.00 1.00 C ATOM 6363 H PHE 377 18.475 23.509 56.635 1.00 1.00 H ATOM 6365 N PHE 377 19.128 23.353 55.967 1.00 1.00 N ATOM 6367 CA PHE 377 20.074 24.415 55.645 1.00 1.00 C ATOM 6369 CB PHE 377 19.335 25.743 55.427 1.00 1.00 C ATOM 6371 C PHE 377 21.085 24.576 56.772 1.00 1.00 C ATOM 6373 O PHE 377 21.328 25.689 57.239 1.00 1.00 O ATOM 6375 CG PHE 377 18.278 25.684 54.355 1.00 1.00 C ATOM 6377 CD1 PHE 377 16.934 25.581 54.694 1.00 1.00 C ATOM 6379 CE1 PHE 377 15.952 25.529 53.708 1.00 1.00 C ATOM 6381 CZ PHE 377 16.316 25.561 52.368 1.00 1.00 C ATOM 6383 CD2 PHE 377 18.631 25.706 53.011 1.00 1.00 C ATOM 6385 CE2 PHE 377 17.658 25.637 52.017 1.00 1.00 C ATOM 6387 H GLN 378 21.631 22.698 56.650 1.00 1.00 H ATOM 6389 N GLN 378 21.726 23.478 57.155 1.00 1.00 N ATOM 6391 CA GLN 378 22.615 23.483 58.311 1.00 1.00 C ATOM 6393 CB GLN 378 23.250 22.104 58.512 1.00 1.00 C ATOM 6395 C GLN 378 23.711 24.530 58.159 1.00 1.00 C ATOM 6397 O GLN 378 24.182 25.087 59.152 1.00 1.00 O ATOM 6399 CG GLN 378 24.264 21.732 57.439 1.00 1.00 C ATOM 6401 CD GLN 378 23.660 20.939 56.296 1.00 1.00 C ATOM 6403 NE2 GLN 378 24.396 19.942 55.815 1.00 1.00 N ATOM 6405 HE21 GLN 378 25.236 19.773 56.209 1.00 1.00 H ATOM 6407 HE22 GLN 378 24.066 19.421 55.101 1.00 1.00 H ATOM 6409 OE1 GLN 378 22.538 21.205 55.857 1.00 1.00 O ATOM 6411 H TRP 379 23.821 24.241 56.207 1.00 1.00 H ATOM 6413 N TRP 379 24.172 24.740 56.933 1.00 1.00 N ATOM 6415 CA TRP 379 25.198 25.743 56.674 1.00 1.00 C ATOM 6417 CB TRP 379 25.746 25.588 55.251 1.00 1.00 C ATOM 6419 C TRP 379 24.671 27.156 56.911 1.00 1.00 C ATOM 6421 O TRP 379 25.297 27.942 57.625 1.00 1.00 O ATOM 6423 CG TRP 379 26.427 24.270 55.026 1.00 1.00 C ATOM 6425 CD1 TRP 379 25.894 23.161 54.429 1.00 1.00 C ATOM 6427 NE1 TRP 379 26.811 22.137 54.441 1.00 1.00 N ATOM 6429 HE1 TRP 379 26.663 21.266 54.089 1.00 1.00 H ATOM 6431 CD2 TRP 379 27.757 23.917 55.424 1.00 1.00 C ATOM 6433 CE2 TRP 379 27.953 22.567 55.063 1.00 1.00 C ATOM 6435 CE3 TRP 379 28.792 24.604 56.070 1.00 1.00 C ATOM 6437 CZ3 TRP 379 29.972 23.923 56.351 1.00 1.00 C ATOM 6439 CH2 TRP 379 30.121 22.566 56.016 1.00 1.00 H ATOM 6441 CZ2 TRP 379 29.110 21.863 55.409 1.00 1.00 C ATOM 6443 H SER 380 22.969 26.781 55.997 1.00 1.00 H ATOM 6445 N SER 380 23.481 27.453 56.395 1.00 1.00 N ATOM 6447 CA SER 380 22.912 28.792 56.520 1.00 1.00 C ATOM 6449 CB SER 380 21.789 29.000 55.501 1.00 1.00 C ATOM 6451 C SER 380 22.366 29.033 57.923 1.00 1.00 C ATOM 6453 O SER 380 21.796 28.128 58.534 1.00 1.00 O ATOM 6455 OG SER 380 21.151 30.248 55.721 1.00 1.00 O ATOM 6457 H GLU 381 22.980 30.914 57.944 1.00 1.00 H ATOM 6459 N GLU 381 22.506 30.254 58.427 1.00 1.00 N ATOM 6461 CA GLU 381 21.922 30.594 59.719 1.00 1.00 C ATOM 6463 CB GLU 381 22.680 31.756 60.368 1.00 1.00 C ATOM 6465 C GLU 381 20.445 30.941 59.564 1.00 1.00 C ATOM 6467 O GLU 381 19.792 31.227 60.589 1.00 1.00 O ATOM 6469 OXT GLU 381 19.903 30.725 58.461 1.00 1.00 O ATOM 6471 CG GLU 381 22.174 32.118 61.756 1.00 1.00 C ATOM 6473 CD GLU 381 22.977 33.226 62.416 1.00 1.00 C ATOM 6475 OE1 GLU 381 23.948 33.713 61.794 1.00 1.00 O ATOM 6477 OE2 GLU 381 22.643 33.605 63.561 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 86.38 50.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 96.79 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 78.31 56.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 118.77 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 4.50 100.0 2 7.7 26 ARMSSC1 RELIABLE SIDE CHAINS . 4.50 100.0 2 8.0 25 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC1 SURFACE . . . . . . . . 5.59 100.0 1 4.3 23 ARMSSC1 BURIED . . . . . . . . 3.03 100.0 1 33.3 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.86 100.0 2 9.1 22 ARMSSC2 RELIABLE SIDE CHAINS . 3.86 100.0 2 12.5 16 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC2 SURFACE . . . . . . . . 5.42 100.0 1 5.0 20 ARMSSC2 BURIED . . . . . . . . 0.60 100.0 1 50.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.92 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.92 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3199 CRMSCA SECONDARY STRUCTURE . . 7.62 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.16 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.55 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.94 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.80 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.21 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.24 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.60 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 12.94 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.00 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.96 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.82 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.37 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.93 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.75 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.00 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.171 0.769 0.384 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.230 0.730 0.365 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.463 0.778 0.389 26 100.0 26 ERRCA BURIED . . . . . . . . 6.653 0.720 0.360 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.219 0.773 0.386 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.399 0.737 0.368 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.551 0.784 0.392 129 100.0 129 ERRMC BURIED . . . . . . . . 6.361 0.712 0.356 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.570 0.805 0.402 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 10.966 0.812 0.406 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.389 0.781 0.391 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.022 0.815 0.408 120 100.0 120 ERRSC BURIED . . . . . . . . 5.154 0.679 0.340 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.427 0.790 0.395 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 7.366 0.759 0.379 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.866 0.801 0.400 224 100.0 224 ERRALL BURIED . . . . . . . . 6.154 0.708 0.354 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 18 31 31 DISTCA CA (P) 0.00 0.00 0.00 19.35 58.06 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.03 6.77 DISTCA ALL (N) 0 0 2 38 127 254 254 DISTALL ALL (P) 0.00 0.00 0.79 14.96 50.00 254 DISTALL ALL (RMS) 0.00 0.00 2.98 4.14 6.96 DISTALL END of the results output