####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS291_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS291_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 353 - 374 4.89 13.14 LONGEST_CONTINUOUS_SEGMENT: 22 354 - 375 4.77 13.11 LCS_AVERAGE: 61.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 1.95 18.14 LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.83 18.28 LCS_AVERAGE: 19.46 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 371 - 376 0.90 17.46 LCS_AVERAGE: 14.57 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 3 3 3 3 3 4 5 6 8 9 10 12 14 16 16 18 20 21 23 23 LCS_GDT A 352 A 352 3 3 10 3 3 3 3 3 4 5 6 8 9 11 12 14 16 18 21 22 23 24 24 LCS_GDT E 353 E 353 3 3 22 3 4 4 4 4 4 5 8 9 12 14 15 17 17 19 21 22 23 24 24 LCS_GDT E 354 E 354 3 4 22 3 4 4 5 5 6 8 11 14 15 17 19 21 21 21 21 22 23 24 24 LCS_GDT L 355 L 355 4 5 22 3 4 4 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT G 356 G 356 4 5 22 3 3 4 5 5 5 7 10 10 13 16 19 21 21 21 21 22 23 24 24 LCS_GDT N 357 N 357 4 5 22 3 3 4 5 5 5 5 10 10 13 14 19 21 21 21 21 22 23 24 24 LCS_GDT I 358 I 358 4 5 22 3 4 4 5 5 5 7 11 13 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT I 359 I 359 4 5 22 3 4 4 5 6 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT V 360 V 360 3 4 22 3 3 3 5 5 8 9 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT A 361 A 361 3 6 22 3 4 4 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT W 362 W 362 5 7 22 5 5 5 6 6 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT N 363 N 363 5 7 22 5 5 5 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT P 364 P 364 5 7 22 5 5 5 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT N 365 N 365 5 7 22 5 5 5 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT L 366 L 366 5 7 22 5 5 5 6 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT W 367 W 367 5 7 22 0 4 5 6 6 6 8 10 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT K 368 K 368 5 7 22 4 5 5 5 6 7 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT K 369 K 369 5 5 22 4 5 5 5 5 6 8 11 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT G 370 G 370 5 5 22 4 5 5 5 6 8 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT T 371 T 371 6 8 22 4 5 6 7 7 9 9 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT N 372 N 372 6 8 22 4 5 6 7 7 9 9 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT G 373 G 373 6 8 22 4 5 6 7 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT Y 374 Y 374 6 8 22 4 4 6 7 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 LCS_GDT P 375 P 375 6 8 22 4 5 6 7 7 9 9 10 10 12 13 14 15 18 20 21 22 23 24 24 LCS_GDT I 376 I 376 6 8 11 4 5 6 7 7 9 9 10 10 12 13 14 15 15 17 18 20 21 21 22 LCS_GDT F 377 F 377 5 8 11 3 5 6 7 7 9 9 10 10 12 13 14 15 15 17 18 20 21 21 21 LCS_GDT Q 378 Q 378 5 8 11 3 5 6 6 7 9 9 9 9 12 13 14 15 15 17 18 20 21 21 21 LCS_GDT W 379 W 379 5 8 11 3 5 6 6 7 9 9 10 10 12 13 14 15 15 17 18 20 21 21 21 LCS_GDT S 380 S 380 3 4 11 3 3 3 4 4 5 7 10 10 12 13 14 15 15 17 18 19 21 21 21 LCS_GDT E 381 E 381 3 4 11 0 3 3 5 5 7 8 10 10 12 13 14 15 15 17 17 19 19 20 21 LCS_AVERAGE LCS_A: 31.88 ( 14.57 19.46 61.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 7 7 9 10 12 14 17 18 19 21 21 21 21 22 23 24 24 GDT PERCENT_AT 16.13 16.13 19.35 22.58 22.58 29.03 32.26 38.71 45.16 54.84 58.06 61.29 67.74 67.74 67.74 67.74 70.97 74.19 77.42 77.42 GDT RMS_LOCAL 0.30 0.30 0.90 1.36 1.24 2.04 2.41 2.92 3.22 3.57 3.71 3.96 4.34 4.34 4.34 4.34 4.77 5.36 5.72 5.72 GDT RMS_ALL_AT 14.25 14.25 17.46 17.76 17.77 18.27 12.96 13.54 13.67 13.45 13.51 13.41 13.29 13.29 13.29 13.29 13.11 13.11 12.87 12.87 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 17.582 0 0.053 0.065 20.025 0.000 0.000 LGA A 352 A 352 14.572 0 0.434 0.423 16.159 0.000 0.000 LGA E 353 E 353 12.865 0 0.609 1.231 19.747 0.357 0.159 LGA E 354 E 354 7.781 0 0.642 1.072 14.484 11.548 5.450 LGA L 355 L 355 2.664 0 0.559 0.542 7.386 45.238 38.631 LGA G 356 G 356 6.800 0 0.391 0.391 7.412 15.714 15.714 LGA N 357 N 357 7.740 0 0.169 0.346 10.739 10.238 5.536 LGA I 358 I 358 5.517 0 0.603 0.783 7.118 21.548 20.119 LGA I 359 I 359 3.338 0 0.595 0.772 4.602 43.690 50.595 LGA V 360 V 360 4.175 0 0.633 0.634 7.918 42.143 28.571 LGA A 361 A 361 2.460 0 0.712 0.662 4.639 79.524 69.905 LGA W 362 W 362 2.650 0 0.230 1.256 11.017 61.190 28.912 LGA N 363 N 363 1.275 0 0.140 1.004 3.203 81.429 73.631 LGA P 364 P 364 2.350 0 0.066 0.325 4.816 68.810 58.095 LGA N 365 N 365 1.699 0 0.085 0.144 4.917 75.000 58.631 LGA L 366 L 366 2.370 0 0.219 1.383 5.550 63.333 52.262 LGA W 367 W 367 5.246 0 0.584 1.309 17.126 35.952 11.020 LGA K 368 K 368 5.563 0 0.657 0.965 10.278 21.548 13.915 LGA K 369 K 369 6.260 0 0.022 0.801 11.024 26.786 14.603 LGA G 370 G 370 4.023 0 0.155 0.155 5.489 32.976 32.976 LGA T 371 T 371 4.755 0 0.676 0.980 6.558 29.524 24.966 LGA N 372 N 372 5.536 0 0.103 0.901 6.739 32.024 23.155 LGA G 373 G 373 2.772 0 0.194 0.194 4.019 54.048 54.048 LGA Y 374 Y 374 2.688 0 0.084 0.132 7.055 48.810 41.032 LGA P 375 P 375 9.145 0 0.060 0.064 10.621 3.690 4.218 LGA I 376 I 376 13.984 0 0.266 1.051 16.702 0.000 0.000 LGA F 377 F 377 20.101 0 0.030 1.338 25.672 0.000 0.000 LGA Q 378 Q 378 24.334 0 0.598 0.849 27.630 0.000 0.000 LGA W 379 W 379 28.924 0 0.123 1.101 32.361 0.000 0.000 LGA S 380 S 380 30.492 0 0.461 0.867 31.557 0.000 0.000 LGA E 381 E 381 33.016 1 0.581 0.838 34.002 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.784 9.652 10.772 29.197 23.424 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.82 36.290 33.798 0.411 LGA_LOCAL RMSD: 2.821 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.029 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.784 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.801159 * X + 0.179873 * Y + 0.570780 * Z + 169.300888 Y_new = 0.595772 * X + -0.149558 * Y + -0.789106 * Z + 64.161224 Z_new = -0.056575 * X + 0.972254 * Y + -0.226983 * Z + 303.539581 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.639417 0.056605 1.800149 [DEG: 36.6359 3.2432 103.1409 ] ZXZ: 0.626209 1.799775 -0.058124 [DEG: 35.8792 103.1195 -3.3302 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS291_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS291_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.82 33.798 9.78 REMARK ---------------------------------------------------------- MOLECULE T0537TS291_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 21.089 8.266 47.461 1.00 1.00 N ATOM 2530 CA SER 351 21.634 9.335 48.244 1.00 1.00 C ATOM 2531 C SER 351 20.757 10.522 48.027 1.00 1.00 C ATOM 2532 O SER 351 19.939 10.543 47.109 1.00 1.00 O ATOM 2533 CB SER 351 23.065 9.647 47.803 1.00 1.00 C ATOM 2534 OG SER 351 23.092 10.156 46.480 1.00 1.00 O ATOM 2535 N ALA 352 20.896 11.544 48.893 1.00 1.00 N ATOM 2536 CA ALA 352 20.081 12.715 48.763 1.00 1.00 C ATOM 2537 C ALA 352 18.681 12.271 48.495 1.00 1.00 C ATOM 2538 O ALA 352 18.029 12.743 47.565 1.00 1.00 O ATOM 2539 CB ALA 352 20.577 13.581 47.615 1.00 1.00 C ATOM 2540 N GLU 353 18.194 11.314 49.306 1.00 1.00 N ATOM 2541 CA GLU 353 16.866 10.811 49.129 1.00 1.00 C ATOM 2542 C GLU 353 15.942 11.774 49.795 1.00 1.00 C ATOM 2543 O GLU 353 16.032 12.003 51.000 1.00 1.00 O ATOM 2544 CB GLU 353 16.729 9.424 49.761 1.00 1.00 C ATOM 2545 CG GLU 353 17.618 8.364 49.130 1.00 1.00 C ATOM 2546 CD GLU 353 19.042 8.415 49.648 1.00 1.00 C ATOM 2547 OE1 GLU 353 19.305 9.194 50.588 1.00 1.00 O ATOM 2548 OE2 GLU 353 19.894 7.672 49.116 1.00 1.00 O ATOM 2549 N GLU 354 15.038 12.394 49.013 1.00 1.00 N ATOM 2550 CA GLU 354 14.082 13.264 49.624 1.00 1.00 C ATOM 2551 C GLU 354 12.758 12.677 49.261 1.00 1.00 C ATOM 2552 O GLU 354 12.539 12.277 48.121 1.00 1.00 O ATOM 2553 CB GLU 354 14.231 14.688 49.083 1.00 1.00 C ATOM 2554 CG GLU 354 15.543 15.359 49.455 1.00 1.00 C ATOM 2555 CD GLU 354 15.629 16.786 48.952 1.00 1.00 C ATOM 2556 OE1 GLU 354 14.670 17.245 48.297 1.00 1.00 O ATOM 2557 OE2 GLU 354 16.657 17.446 49.213 1.00 1.00 O ATOM 2558 N LEU 355 11.840 12.595 50.241 1.00 1.00 N ATOM 2559 CA LEU 355 10.588 11.942 49.988 1.00 1.00 C ATOM 2560 C LEU 355 9.468 12.871 50.307 1.00 1.00 C ATOM 2561 O LEU 355 8.948 12.889 51.421 1.00 1.00 O ATOM 2562 CB LEU 355 10.454 10.688 50.854 1.00 1.00 C ATOM 2563 CG LEU 355 11.459 9.567 50.582 1.00 1.00 C ATOM 2564 CD1 LEU 355 11.313 8.453 51.609 1.00 1.00 C ATOM 2565 CD2 LEU 355 11.242 8.972 49.200 1.00 1.00 C ATOM 2566 N GLY 356 9.091 13.697 49.309 1.00 1.00 N ATOM 2567 CA GLY 356 7.971 14.580 49.439 1.00 1.00 C ATOM 2568 C GLY 356 8.279 15.622 50.460 1.00 1.00 C ATOM 2569 O GLY 356 9.265 16.349 50.359 1.00 1.00 O ATOM 2570 N ASN 357 7.406 15.704 51.482 1.00 1.00 N ATOM 2571 CA ASN 357 7.575 16.622 52.568 1.00 1.00 C ATOM 2572 C ASN 357 8.464 15.943 53.552 1.00 1.00 C ATOM 2573 O ASN 357 8.966 16.568 54.484 1.00 1.00 O ATOM 2574 CB ASN 357 6.224 16.955 53.204 1.00 1.00 C ATOM 2575 CG ASN 357 5.307 17.708 52.260 1.00 1.00 C ATOM 2576 OD1 ASN 357 5.639 18.795 51.792 1.00 1.00 O ATOM 2577 ND2 ASN 357 4.145 17.128 51.979 1.00 1.00 N ATOM 2578 N ILE 358 8.652 14.623 53.379 1.00 1.00 N ATOM 2579 CA ILE 358 9.496 13.888 54.268 1.00 1.00 C ATOM 2580 C ILE 358 10.886 13.986 53.737 1.00 1.00 C ATOM 2581 O ILE 358 11.154 13.625 52.592 1.00 1.00 O ATOM 2582 CB ILE 358 9.077 12.409 54.351 1.00 1.00 C ATOM 2583 CG1 ILE 358 7.614 12.292 54.785 1.00 1.00 C ATOM 2584 CG2 ILE 358 9.940 11.665 55.358 1.00 1.00 C ATOM 2585 CD1 ILE 358 7.328 12.910 56.137 1.00 1.00 C ATOM 2586 N ILE 359 11.813 14.508 54.560 1.00 1.00 N ATOM 2587 CA ILE 359 13.160 14.632 54.096 1.00 1.00 C ATOM 2588 C ILE 359 13.980 13.629 54.835 1.00 1.00 C ATOM 2589 O ILE 359 14.042 13.632 56.063 1.00 1.00 O ATOM 2590 CB ILE 359 13.718 16.044 54.353 1.00 1.00 C ATOM 2591 CG1 ILE 359 12.817 17.099 53.707 1.00 1.00 C ATOM 2592 CG2 ILE 359 15.115 16.180 53.767 1.00 1.00 C ATOM 2593 CD1 ILE 359 12.682 16.952 52.207 1.00 1.00 C ATOM 2594 N VAL 360 14.617 12.716 54.080 1.00 1.00 N ATOM 2595 CA VAL 360 15.429 11.702 54.678 1.00 1.00 C ATOM 2596 C VAL 360 16.842 12.170 54.610 1.00 1.00 C ATOM 2597 O VAL 360 17.279 12.709 53.594 1.00 1.00 O ATOM 2598 CB VAL 360 15.293 10.360 53.938 1.00 1.00 C ATOM 2599 CG1 VAL 360 16.223 9.319 54.545 1.00 1.00 C ATOM 2600 CG2 VAL 360 13.866 9.842 54.030 1.00 1.00 C ATOM 2601 N ALA 361 17.589 12.003 55.716 1.00 1.00 N ATOM 2602 CA ALA 361 18.961 12.410 55.706 1.00 1.00 C ATOM 2603 C ALA 361 19.713 11.380 56.475 1.00 1.00 C ATOM 2604 O ALA 361 19.121 10.571 57.190 1.00 1.00 O ATOM 2605 CB ALA 361 19.113 13.776 56.356 1.00 1.00 C ATOM 2606 N TRP 362 21.050 11.366 56.324 1.00 1.00 N ATOM 2607 CA TRP 362 21.826 10.398 57.036 1.00 1.00 C ATOM 2608 C TRP 362 22.940 11.154 57.675 1.00 1.00 C ATOM 2609 O TRP 362 23.824 10.565 58.295 1.00 1.00 O ATOM 2610 CB TRP 362 22.371 9.337 56.078 1.00 1.00 C ATOM 2611 CG TRP 362 23.205 9.903 54.969 1.00 1.00 C ATOM 2612 CD1 TRP 362 22.771 10.299 53.737 1.00 1.00 C ATOM 2613 CD2 TRP 362 24.618 10.137 54.992 1.00 1.00 C ATOM 2614 NE1 TRP 362 23.825 10.764 52.989 1.00 1.00 N ATOM 2615 CE2 TRP 362 24.972 10.674 53.739 1.00 1.00 C ATOM 2616 CE3 TRP 362 25.619 9.944 55.949 1.00 1.00 C ATOM 2617 CZ2 TRP 362 26.283 11.022 53.418 1.00 1.00 C ATOM 2618 CZ3 TRP 362 26.918 10.290 55.627 1.00 1.00 C ATOM 2619 CH2 TRP 362 27.241 10.822 54.374 1.00 1.00 H ATOM 2620 N ASN 363 22.939 12.490 57.521 1.00 1.00 N ATOM 2621 CA ASN 363 23.994 13.253 58.113 1.00 1.00 C ATOM 2622 C ASN 363 23.430 13.899 59.331 1.00 1.00 C ATOM 2623 O ASN 363 22.466 14.658 59.260 1.00 1.00 O ATOM 2624 CB ASN 363 24.500 14.316 57.136 1.00 1.00 C ATOM 2625 CG ASN 363 25.114 13.714 55.888 1.00 1.00 C ATOM 2626 OD1 ASN 363 26.134 13.028 55.955 1.00 1.00 O ATOM 2627 ND2 ASN 363 24.494 13.970 54.742 1.00 1.00 N ATOM 2628 N PRO 364 23.986 13.591 60.461 1.00 1.00 N ATOM 2629 CA PRO 364 23.489 14.205 61.655 1.00 1.00 C ATOM 2630 C PRO 364 23.922 15.630 61.670 1.00 1.00 C ATOM 2631 O PRO 364 23.376 16.409 62.449 1.00 1.00 O ATOM 2632 CB PRO 364 24.123 13.388 62.783 1.00 1.00 C ATOM 2633 CG PRO 364 25.361 12.814 62.178 1.00 1.00 C ATOM 2634 CD PRO 364 25.030 12.534 60.739 1.00 1.00 C ATOM 2635 N ASN 365 24.905 15.994 60.832 1.00 1.00 N ATOM 2636 CA ASN 365 25.328 17.357 60.821 1.00 1.00 C ATOM 2637 C ASN 365 24.178 18.149 60.310 1.00 1.00 C ATOM 2638 O ASN 365 24.173 19.377 60.387 1.00 1.00 O ATOM 2639 CB ASN 365 26.546 17.533 59.912 1.00 1.00 C ATOM 2640 CG ASN 365 27.808 16.945 60.511 1.00 1.00 C ATOM 2641 OD1 ASN 365 27.886 16.713 61.718 1.00 1.00 O ATOM 2642 ND2 ASN 365 28.803 16.700 59.666 1.00 1.00 N ATOM 2643 N LEU 366 23.170 17.458 59.749 1.00 1.00 N ATOM 2644 CA LEU 366 22.049 18.177 59.234 1.00 1.00 C ATOM 2645 C LEU 366 21.108 18.404 60.366 1.00 1.00 C ATOM 2646 O LEU 366 20.093 19.085 60.226 1.00 1.00 O ATOM 2647 CB LEU 366 21.357 17.373 58.130 1.00 1.00 C ATOM 2648 CG LEU 366 22.188 17.086 56.879 1.00 1.00 C ATOM 2649 CD1 LEU 366 21.417 16.199 55.913 1.00 1.00 C ATOM 2650 CD2 LEU 366 22.540 18.379 56.158 1.00 1.00 C ATOM 2651 N TRP 367 21.423 17.799 61.523 1.00 1.00 N ATOM 2652 CA TRP 367 20.644 18.044 62.692 1.00 1.00 C ATOM 2653 C TRP 367 20.634 19.523 62.811 1.00 1.00 C ATOM 2654 O TRP 367 19.618 20.117 63.171 1.00 1.00 O ATOM 2655 CB TRP 367 21.287 17.383 63.913 1.00 1.00 C ATOM 2656 CG TRP 367 20.507 17.571 65.178 1.00 1.00 C ATOM 2657 CD1 TRP 367 19.484 16.792 65.633 1.00 1.00 C ATOM 2658 CD2 TRP 367 20.688 18.606 66.152 1.00 1.00 C ATOM 2659 NE1 TRP 367 19.015 17.276 66.830 1.00 1.00 N ATOM 2660 CE2 TRP 367 19.739 18.391 67.169 1.00 1.00 C ATOM 2661 CE3 TRP 367 21.558 19.695 66.261 1.00 1.00 C ATOM 2662 CZ2 TRP 367 19.635 19.224 68.283 1.00 1.00 C ATOM 2663 CZ3 TRP 367 21.453 20.518 67.366 1.00 1.00 C ATOM 2664 CH2 TRP 367 20.500 20.280 68.364 1.00 1.00 H ATOM 2665 N LYS 368 21.773 20.169 62.524 1.00 1.00 N ATOM 2666 CA LYS 368 21.760 21.587 62.670 1.00 1.00 C ATOM 2667 C LYS 368 20.979 22.126 61.528 1.00 1.00 C ATOM 2668 O LYS 368 20.574 23.288 61.523 1.00 1.00 O ATOM 2669 CB LYS 368 23.187 22.141 62.647 1.00 1.00 C ATOM 2670 CG LYS 368 24.019 21.761 63.862 1.00 1.00 C ATOM 2671 CD LYS 368 25.430 22.317 63.760 1.00 1.00 C ATOM 2672 CE LYS 368 26.251 21.967 64.989 1.00 1.00 C ATOM 2673 NZ LYS 368 27.642 22.492 64.897 1.00 1.00 N ATOM 2674 N LYS 369 20.775 21.275 60.508 1.00 1.00 N ATOM 2675 CA LYS 369 20.032 21.683 59.361 1.00 1.00 C ATOM 2676 C LYS 369 18.662 21.991 59.843 1.00 1.00 C ATOM 2677 O LYS 369 18.160 21.352 60.766 1.00 1.00 O ATOM 2678 CB LYS 369 19.998 20.562 58.320 1.00 1.00 C ATOM 2679 CG LYS 369 19.293 20.938 57.027 1.00 1.00 C ATOM 2680 CD LYS 369 19.352 19.806 56.015 1.00 1.00 C ATOM 2681 CE LYS 369 18.670 20.191 54.713 1.00 1.00 C ATOM 2682 NZ LYS 369 18.698 19.082 53.721 1.00 1.00 N ATOM 2683 N GLY 370 18.022 23.003 59.236 1.00 1.00 N ATOM 2684 CA GLY 370 16.691 23.319 59.646 1.00 1.00 C ATOM 2685 C GLY 370 15.788 22.767 58.602 1.00 1.00 C ATOM 2686 O GLY 370 16.181 21.910 57.812 1.00 1.00 O ATOM 2687 N THR 371 14.536 23.253 58.575 1.00 1.00 N ATOM 2688 CA THR 371 13.608 22.782 57.596 1.00 1.00 C ATOM 2689 C THR 371 13.640 23.764 56.478 1.00 1.00 C ATOM 2690 O THR 371 13.808 24.963 56.700 1.00 1.00 O ATOM 2691 CB THR 371 12.183 22.684 58.171 1.00 1.00 C ATOM 2692 OG1 THR 371 12.166 21.750 59.258 1.00 1.00 O ATOM 2693 CG2 THR 371 11.209 22.212 57.102 1.00 1.00 C ATOM 2694 N ASN 372 13.496 23.282 55.230 1.00 1.00 N ATOM 2695 CA ASN 372 13.516 24.219 54.153 1.00 1.00 C ATOM 2696 C ASN 372 12.092 24.572 53.914 1.00 1.00 C ATOM 2697 O ASN 372 11.755 25.161 52.889 1.00 1.00 O ATOM 2698 CB ASN 372 14.143 23.590 52.907 1.00 1.00 C ATOM 2699 CG ASN 372 15.631 23.349 53.062 1.00 1.00 C ATOM 2700 OD1 ASN 372 16.065 22.226 53.315 1.00 1.00 O ATOM 2701 ND2 ASN 372 16.420 24.407 52.911 1.00 1.00 N ATOM 2702 N GLY 373 11.206 24.196 54.852 1.00 1.00 N ATOM 2703 CA GLY 373 9.826 24.503 54.645 1.00 1.00 C ATOM 2704 C GLY 373 9.238 23.419 53.812 1.00 1.00 C ATOM 2705 O GLY 373 8.159 23.562 53.240 1.00 1.00 O ATOM 2706 N TYR 374 9.959 22.288 53.725 1.00 1.00 N ATOM 2707 CA TYR 374 9.484 21.192 52.941 1.00 1.00 C ATOM 2708 C TYR 374 8.314 20.613 53.661 1.00 1.00 C ATOM 2709 O TYR 374 8.331 20.416 54.875 1.00 1.00 O ATOM 2710 CB TYR 374 10.579 20.136 52.778 1.00 1.00 C ATOM 2711 CG TYR 374 11.709 20.559 51.867 1.00 1.00 C ATOM 2712 CD1 TYR 374 12.905 21.033 52.392 1.00 1.00 C ATOM 2713 CD2 TYR 374 11.577 20.483 50.487 1.00 1.00 C ATOM 2714 CE1 TYR 374 13.943 21.423 51.566 1.00 1.00 C ATOM 2715 CE2 TYR 374 12.604 20.868 49.647 1.00 1.00 C ATOM 2716 CZ TYR 374 13.793 21.341 50.199 1.00 1.00 C ATOM 2717 OH TYR 374 14.826 21.728 49.376 1.00 1.00 H ATOM 2718 N PRO 375 7.279 20.377 52.907 1.00 1.00 N ATOM 2719 CA PRO 375 6.079 19.831 53.476 1.00 1.00 C ATOM 2720 C PRO 375 6.292 18.427 53.937 1.00 1.00 C ATOM 2721 O PRO 375 7.120 17.725 53.361 1.00 1.00 O ATOM 2722 CB PRO 375 5.065 19.895 52.332 1.00 1.00 C ATOM 2723 CG PRO 375 5.610 20.930 51.407 1.00 1.00 C ATOM 2724 CD PRO 375 7.107 20.811 51.483 1.00 1.00 C ATOM 2725 N ILE 376 5.559 18.014 54.989 1.00 1.00 N ATOM 2726 CA ILE 376 5.674 16.698 55.543 1.00 1.00 C ATOM 2727 C ILE 376 4.459 15.937 55.113 1.00 1.00 C ATOM 2728 O ILE 376 3.340 16.270 55.499 1.00 1.00 O ATOM 2729 CB ILE 376 5.748 16.737 57.081 1.00 1.00 C ATOM 2730 CG1 ILE 376 6.960 17.552 57.536 1.00 1.00 C ATOM 2731 CG2 ILE 376 5.876 15.329 57.644 1.00 1.00 C ATOM 2732 CD1 ILE 376 6.995 17.814 59.025 1.00 1.00 C ATOM 2733 N PHE 377 4.654 14.904 54.272 1.00 1.00 N ATOM 2734 CA PHE 377 3.557 14.144 53.745 1.00 1.00 C ATOM 2735 C PHE 377 2.793 13.514 54.862 1.00 1.00 C ATOM 2736 O PHE 377 3.339 13.169 55.909 1.00 1.00 O ATOM 2737 CB PHE 377 4.066 13.042 52.815 1.00 1.00 C ATOM 2738 CG PHE 377 2.973 12.222 52.192 1.00 1.00 C ATOM 2739 CD1 PHE 377 2.223 12.722 51.142 1.00 1.00 C ATOM 2740 CD2 PHE 377 2.695 10.948 52.656 1.00 1.00 C ATOM 2741 CE1 PHE 377 1.218 11.967 50.569 1.00 1.00 C ATOM 2742 CE2 PHE 377 1.689 10.192 52.083 1.00 1.00 C ATOM 2743 CZ PHE 377 0.953 10.697 51.043 1.00 1.00 C ATOM 2744 N GLN 378 1.468 13.382 54.654 1.00 1.00 N ATOM 2745 CA GLN 378 0.583 12.818 55.630 1.00 1.00 C ATOM 2746 C GLN 378 0.460 11.356 55.361 1.00 1.00 C ATOM 2747 O GLN 378 -0.227 10.934 54.434 1.00 1.00 O ATOM 2748 CB GLN 378 -0.797 13.473 55.544 1.00 1.00 C ATOM 2749 CG GLN 378 -0.804 14.952 55.888 1.00 1.00 C ATOM 2750 CD GLN 378 -0.442 15.216 57.337 1.00 1.00 C ATOM 2751 OE1 GLN 378 -0.992 14.597 58.247 1.00 1.00 O ATOM 2752 NE2 GLN 378 0.489 16.139 57.553 1.00 1.00 N ATOM 2753 N TRP 379 1.167 10.550 56.179 1.00 1.00 N ATOM 2754 CA TRP 379 1.154 9.124 56.056 1.00 1.00 C ATOM 2755 C TRP 379 -0.161 8.630 56.560 1.00 1.00 C ATOM 2756 O TRP 379 -0.569 7.505 56.276 1.00 1.00 O ATOM 2757 CB TRP 379 2.287 8.505 56.876 1.00 1.00 C ATOM 2758 CG TRP 379 3.651 8.789 56.325 1.00 1.00 C ATOM 2759 CD1 TRP 379 4.570 9.665 56.827 1.00 1.00 C ATOM 2760 CD2 TRP 379 4.250 8.196 55.167 1.00 1.00 C ATOM 2761 NE1 TRP 379 5.706 9.655 56.052 1.00 1.00 N ATOM 2762 CE2 TRP 379 5.534 8.761 55.026 1.00 1.00 C ATOM 2763 CE3 TRP 379 3.828 7.244 54.235 1.00 1.00 C ATOM 2764 CZ2 TRP 379 6.397 8.403 53.992 1.00 1.00 C ATOM 2765 CZ3 TRP 379 4.687 6.892 53.211 1.00 1.00 C ATOM 2766 CH2 TRP 379 5.956 7.469 53.095 1.00 1.00 H ATOM 2767 N SER 380 -0.850 9.477 57.350 1.00 1.00 N ATOM 2768 CA SER 380 -2.127 9.119 57.888 1.00 1.00 C ATOM 2769 C SER 380 -3.161 9.595 56.926 1.00 1.00 C ATOM 2770 O SER 380 -4.203 10.117 57.318 1.00 1.00 O ATOM 2771 CB SER 380 -2.337 9.777 59.253 1.00 1.00 C ATOM 2772 OG SER 380 -2.307 11.190 59.148 1.00 1.00 O ATOM 2773 N GLU 381 -2.880 9.443 55.617 1.00 1.00 N ATOM 2774 CA GLU 381 -3.818 9.871 54.624 1.00 1.00 C ATOM 2775 C GLU 381 -3.755 8.862 53.482 1.00 1.00 C ATOM 2776 O GLU 381 -4.837 8.371 53.064 1.00 1.00 O ATOM 2777 CB GLU 381 -3.458 11.267 54.113 1.00 1.00 C ATOM 2778 CG GLU 381 -4.519 11.895 53.224 1.00 1.00 C ATOM 2779 CD GLU 381 -4.116 13.267 52.719 1.00 1.00 C ATOM 2780 OE1 GLU 381 -2.997 13.716 53.044 1.00 1.00 O ATOM 2781 OE2 GLU 381 -4.921 13.893 51.997 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.01 40.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 109.13 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 81.00 42.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.40 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.68 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 88.39 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 59.66 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 92.12 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 8.09 100.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.09 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 80.92 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 90.04 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 76.04 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 96.24 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 44.34 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 30.68 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 12.69 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 44.34 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.55 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.55 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.55 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.78 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.78 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3156 CRMSCA SECONDARY STRUCTURE . . 7.87 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.05 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.30 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.81 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.93 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.11 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.89 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.87 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.71 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.66 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.25 119 99.2 120 CRMSSC BURIED . . . . . . . . 5.57 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.84 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 9.22 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.22 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.40 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.163 0.768 0.384 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.321 0.721 0.360 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.484 0.776 0.388 26 100.0 26 ERRCA BURIED . . . . . . . . 6.497 0.726 0.363 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.171 0.769 0.385 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.365 0.725 0.363 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.540 0.780 0.390 129 100.0 129 ERRMC BURIED . . . . . . . . 6.105 0.713 0.356 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.933 0.792 0.396 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 9.721 0.787 0.393 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.809 0.777 0.388 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.412 0.803 0.402 119 99.2 120 ERRSC BURIED . . . . . . . . 4.239 0.654 0.327 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.013 0.781 0.391 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 7.444 0.750 0.375 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.465 0.792 0.396 223 99.6 224 ERRALL BURIED . . . . . . . . 5.657 0.699 0.350 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 4 16 31 31 DISTCA CA (P) 0.00 0.00 6.45 12.90 51.61 31 DISTCA CA (RMS) 0.00 0.00 2.48 3.40 6.76 DISTCA ALL (N) 1 2 10 33 120 253 254 DISTALL ALL (P) 0.39 0.79 3.94 12.99 47.24 254 DISTALL ALL (RMS) 0.86 1.48 2.47 3.73 6.83 DISTALL END of the results output