####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS286_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS286_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 358 - 376 4.69 9.49 LCS_AVERAGE: 55.05 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 364 - 371 1.94 12.99 LCS_AVERAGE: 19.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 361 - 365 0.57 18.08 LONGEST_CONTINUOUS_SEGMENT: 5 367 - 371 0.74 11.52 LCS_AVERAGE: 12.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 13 3 3 4 4 5 9 13 13 15 17 18 20 22 22 22 23 25 26 26 26 LCS_GDT A 352 A 352 3 4 15 3 3 3 3 4 4 5 10 14 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 353 E 353 3 4 15 3 3 3 3 4 5 7 8 11 13 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 354 E 354 3 4 15 3 3 3 3 4 5 7 12 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 355 L 355 3 5 15 3 3 3 4 5 5 7 9 12 16 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 356 G 356 3 5 15 3 3 3 4 5 5 6 9 10 12 12 13 15 17 20 24 25 26 26 26 LCS_GDT N 357 N 357 3 5 15 3 3 3 4 5 5 6 7 8 11 12 12 15 16 20 22 25 26 26 26 LCS_GDT I 358 I 358 3 5 19 3 3 3 4 5 5 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 359 I 359 3 5 19 3 3 3 4 5 7 7 9 11 12 12 15 16 19 22 24 25 26 26 26 LCS_GDT V 360 V 360 3 6 19 3 3 3 4 4 7 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT A 361 A 361 5 6 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 362 W 362 5 6 19 3 5 5 5 5 8 11 13 14 15 17 21 22 22 22 24 25 26 26 26 LCS_GDT N 363 N 363 5 6 19 3 5 5 6 6 8 12 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 364 P 364 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 365 N 365 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 366 L 366 4 8 19 3 3 5 6 7 8 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 367 W 367 5 8 19 3 5 5 6 7 9 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 368 K 368 5 8 19 3 5 5 6 7 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 369 K 369 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 370 G 370 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT T 371 T 371 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 372 N 372 4 7 19 3 4 4 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 373 G 373 4 6 19 3 3 4 5 5 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT Y 374 Y 374 4 6 19 3 3 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 375 P 375 4 6 19 3 4 4 4 5 8 11 13 14 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 376 I 376 4 6 19 3 4 4 4 8 8 9 10 11 12 13 14 15 19 22 24 25 26 26 26 LCS_GDT F 377 F 377 4 6 13 3 4 5 5 8 8 9 10 11 11 11 12 13 15 15 16 17 17 19 19 LCS_GDT Q 378 Q 378 4 6 13 3 4 5 5 8 8 9 10 11 11 11 12 12 15 15 16 17 17 18 19 LCS_GDT W 379 W 379 4 6 13 3 3 5 5 8 8 9 10 11 11 11 12 14 15 16 17 17 17 19 19 LCS_GDT S 380 S 380 4 6 13 3 3 5 5 8 8 9 10 11 11 12 13 14 15 16 17 17 17 20 20 LCS_GDT E 381 E 381 3 6 13 3 3 5 5 8 8 9 10 11 11 11 12 12 15 16 17 17 17 18 19 LCS_AVERAGE LCS_A: 29.21 ( 12.80 19.77 55.05 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 GDT PERCENT_AT 9.68 16.13 16.13 22.58 25.81 32.26 41.94 41.94 48.39 54.84 58.06 67.74 70.97 70.97 70.97 77.42 80.65 83.87 83.87 83.87 GDT RMS_LOCAL 0.03 0.57 0.57 1.34 1.54 2.06 2.76 2.76 3.16 3.53 3.76 4.40 4.46 4.46 4.46 5.36 5.44 5.69 5.69 5.69 GDT RMS_ALL_AT 16.00 18.08 18.08 10.14 10.09 10.10 10.24 10.24 9.94 9.63 9.45 9.01 9.10 9.10 9.10 8.66 8.71 8.61 8.61 8.61 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.519 0 0.041 0.570 5.999 48.690 41.270 LGA A 352 A 352 6.382 0 0.389 0.384 8.859 18.333 15.619 LGA E 353 E 353 7.309 0 0.609 0.927 12.154 15.357 7.778 LGA E 354 E 354 5.655 0 0.601 0.627 7.838 14.762 25.450 LGA L 355 L 355 7.947 0 0.648 0.697 9.612 5.595 8.452 LGA G 356 G 356 13.178 0 0.562 0.562 13.898 0.000 0.000 LGA N 357 N 357 12.952 0 0.285 0.769 16.165 0.000 0.000 LGA I 358 I 358 9.109 0 0.599 1.529 10.227 0.357 7.917 LGA I 359 I 359 12.423 0 0.601 1.519 18.037 0.000 0.000 LGA V 360 V 360 8.507 0 0.630 1.460 10.296 5.000 3.946 LGA A 361 A 361 3.424 0 0.649 0.581 5.412 33.452 39.714 LGA W 362 W 362 9.025 0 0.097 1.190 19.529 5.357 1.531 LGA N 363 N 363 5.133 0 0.026 0.271 6.436 32.619 30.417 LGA P 364 P 364 1.472 0 0.785 0.865 2.770 71.190 68.435 LGA N 365 N 365 2.843 0 0.738 0.629 7.691 61.429 39.345 LGA L 366 L 366 3.140 0 0.538 1.345 9.637 59.643 33.810 LGA W 367 W 367 3.282 0 0.052 0.153 10.620 61.190 26.463 LGA K 368 K 368 2.723 0 0.047 0.843 3.037 60.952 58.042 LGA K 369 K 369 2.274 0 0.095 0.848 4.210 64.762 56.931 LGA G 370 G 370 2.319 0 0.025 0.025 2.319 66.786 66.786 LGA T 371 T 371 2.199 0 0.639 0.590 3.955 61.429 55.646 LGA N 372 N 372 3.059 0 0.658 1.254 9.462 65.119 38.155 LGA G 373 G 373 3.085 0 0.110 0.110 4.084 48.571 48.571 LGA Y 374 Y 374 2.851 0 0.597 0.966 6.198 43.214 43.413 LGA P 375 P 375 6.112 0 0.067 0.330 9.916 12.976 14.286 LGA I 376 I 376 12.664 0 0.170 1.078 15.184 0.119 0.060 LGA F 377 F 377 18.767 0 0.054 1.305 25.465 0.000 0.000 LGA Q 378 Q 378 21.401 0 0.322 0.407 25.796 0.000 0.000 LGA W 379 W 379 22.057 0 0.720 1.218 26.261 0.000 0.000 LGA S 380 S 380 17.859 0 0.262 0.681 19.013 0.000 0.000 LGA E 381 E 381 19.749 0 0.546 1.335 21.174 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.143 8.092 10.069 27.642 23.614 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.76 39.516 35.814 0.455 LGA_LOCAL RMSD: 2.756 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.240 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.143 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.438666 * X + -0.170156 * Y + 0.882394 * Z + 45.564644 Y_new = -0.163525 * X + 0.980631 * Y + 0.107806 * Z + -13.491962 Z_new = -0.883647 * X + -0.097003 * Y + -0.457994 * Z + 97.986504 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.784771 1.083595 -2.932877 [DEG: -159.5556 62.0854 -168.0415 ] ZXZ: 1.692368 2.046534 -1.680135 [DEG: 96.9655 117.2578 -96.2646 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS286_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS286_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.76 35.814 8.14 REMARK ---------------------------------------------------------- MOLECULE T0537TS286_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2iq7C ATOM 3113 N SER 351 5.805 15.665 49.136 1.00 50.00 N ATOM 3114 CA SER 351 4.431 15.276 49.251 1.00 50.00 C ATOM 3115 C SER 351 4.292 13.885 48.720 1.00 50.00 C ATOM 3116 O SER 351 5.007 13.474 47.807 1.00 50.00 O ATOM 3117 H SER 351 6.305 15.357 48.454 1.00 50.00 H ATOM 3118 CB SER 351 3.532 16.258 48.498 1.00 50.00 C ATOM 3119 HG SER 351 1.943 15.872 49.397 1.00 50.00 H ATOM 3120 OG SER 351 2.168 15.881 48.597 1.00 50.00 O ATOM 3121 N ALA 352 3.351 13.120 49.308 1.00 50.00 N ATOM 3122 CA ALA 352 3.049 11.785 48.880 1.00 50.00 C ATOM 3123 C ALA 352 4.297 10.969 48.831 1.00 50.00 C ATOM 3124 O ALA 352 4.464 10.149 47.929 1.00 50.00 O ATOM 3125 H ALA 352 2.902 13.483 49.998 1.00 50.00 H ATOM 3126 CB ALA 352 2.366 11.805 47.522 1.00 50.00 C ATOM 3127 N GLU 353 5.213 11.140 49.801 1.00 50.00 N ATOM 3128 CA GLU 353 6.371 10.304 49.712 1.00 50.00 C ATOM 3129 C GLU 353 6.250 9.249 50.755 1.00 50.00 C ATOM 3130 O GLU 353 5.922 9.526 51.909 1.00 50.00 O ATOM 3131 H GLU 353 5.135 11.730 50.475 1.00 50.00 H ATOM 3132 CB GLU 353 7.645 11.134 49.886 1.00 50.00 C ATOM 3133 CD GLU 353 10.169 11.193 49.885 1.00 50.00 C ATOM 3134 CG GLU 353 8.929 10.331 49.758 1.00 50.00 C ATOM 3135 OE1 GLU 353 10.149 12.150 50.689 1.00 50.00 O ATOM 3136 OE2 GLU 353 11.162 10.915 49.180 1.00 50.00 O ATOM 3137 N GLU 354 6.480 7.987 50.360 1.00 50.00 N ATOM 3138 CA GLU 354 6.478 6.971 51.360 1.00 50.00 C ATOM 3139 C GLU 354 7.694 6.134 51.136 1.00 50.00 C ATOM 3140 O GLU 354 7.743 5.311 50.222 1.00 50.00 O ATOM 3141 H GLU 354 6.632 7.771 49.499 1.00 50.00 H ATOM 3142 CB GLU 354 5.189 6.151 51.288 1.00 50.00 C ATOM 3143 CD GLU 354 2.675 6.098 51.521 1.00 50.00 C ATOM 3144 CG GLU 354 3.930 6.942 51.604 1.00 50.00 C ATOM 3145 OE1 GLU 354 2.789 4.890 51.227 1.00 50.00 O ATOM 3146 OE2 GLU 354 1.574 6.646 51.749 1.00 50.00 O ATOM 3147 N LEU 355 8.713 6.341 51.987 1.00 50.00 N ATOM 3148 CA LEU 355 9.946 5.612 51.949 1.00 50.00 C ATOM 3149 C LEU 355 9.874 4.753 53.168 1.00 50.00 C ATOM 3150 O LEU 355 9.754 5.275 54.274 1.00 50.00 O ATOM 3151 H LEU 355 8.587 6.981 52.607 1.00 50.00 H ATOM 3152 CB LEU 355 11.136 6.573 51.929 1.00 50.00 C ATOM 3153 CG LEU 355 11.198 7.552 50.755 1.00 50.00 C ATOM 3154 CD1 LEU 355 12.371 8.507 50.912 1.00 50.00 C ATOM 3155 CD2 LEU 355 11.296 6.804 49.435 1.00 50.00 C ATOM 3156 N GLY 356 9.981 3.418 53.017 1.00 50.00 N ATOM 3157 CA GLY 356 9.817 2.613 54.194 1.00 50.00 C ATOM 3158 C GLY 356 10.830 1.515 54.217 1.00 50.00 C ATOM 3159 O GLY 356 11.661 1.387 53.319 1.00 50.00 O ATOM 3160 H GLY 356 10.148 3.026 52.224 1.00 50.00 H ATOM 3161 N ASN 357 10.734 0.673 55.269 1.00 50.00 N ATOM 3162 CA ASN 357 11.603 -0.442 55.526 1.00 50.00 C ATOM 3163 C ASN 357 12.942 0.090 55.912 1.00 50.00 C ATOM 3164 O ASN 357 13.934 -0.635 55.981 1.00 50.00 O ATOM 3165 H ASN 357 10.058 0.856 55.834 1.00 50.00 H ATOM 3166 CB ASN 357 11.676 -1.358 54.302 1.00 50.00 C ATOM 3167 CG ASN 357 12.030 -2.786 54.664 1.00 50.00 C ATOM 3168 OD1 ASN 357 11.584 -3.308 55.686 1.00 50.00 O ATOM 3169 HD21 ASN 357 13.081 -4.275 53.994 1.00 50.00 H ATOM 3170 HD22 ASN 357 13.144 -3.007 53.089 1.00 50.00 H ATOM 3171 ND2 ASN 357 12.839 -3.424 53.825 1.00 50.00 N ATOM 3172 N ILE 358 12.960 1.384 56.253 1.00 50.00 N ATOM 3173 CA ILE 358 14.117 2.099 56.667 1.00 50.00 C ATOM 3174 C ILE 358 13.838 2.646 58.030 1.00 50.00 C ATOM 3175 O ILE 358 12.684 2.833 58.408 1.00 50.00 O ATOM 3176 H ILE 358 12.164 1.803 56.206 1.00 50.00 H ATOM 3177 CB ILE 358 14.484 3.210 55.665 1.00 50.00 C ATOM 3178 CD1 ILE 358 13.713 5.470 54.772 1.00 50.00 C ATOM 3179 CG1 ILE 358 13.353 4.237 55.571 1.00 50.00 C ATOM 3180 CG2 ILE 358 14.821 2.613 54.308 1.00 50.00 C ATOM 3181 N ILE 359 14.897 2.900 58.822 1.00 50.00 N ATOM 3182 CA ILE 359 14.712 3.514 60.096 1.00 50.00 C ATOM 3183 C ILE 359 15.120 4.939 59.908 1.00 50.00 C ATOM 3184 O ILE 359 15.868 5.259 58.985 1.00 50.00 O ATOM 3185 H ILE 359 15.724 2.681 58.544 1.00 50.00 H ATOM 3186 CB ILE 359 15.522 2.795 61.192 1.00 50.00 C ATOM 3187 CD1 ILE 359 17.898 2.394 62.023 1.00 50.00 C ATOM 3188 CG1 ILE 359 17.019 2.882 60.892 1.00 50.00 C ATOM 3189 CG2 ILE 359 15.055 1.355 61.340 1.00 50.00 C ATOM 3190 N VAL 360 14.588 5.841 60.754 1.00 50.00 N ATOM 3191 CA VAL 360 14.883 7.240 60.623 1.00 50.00 C ATOM 3192 C VAL 360 16.359 7.410 60.760 1.00 50.00 C ATOM 3193 O VAL 360 17.012 6.689 61.512 1.00 50.00 O ATOM 3194 H VAL 360 14.041 5.556 61.409 1.00 50.00 H ATOM 3195 CB VAL 360 14.117 8.077 61.664 1.00 50.00 C ATOM 3196 CG1 VAL 360 12.617 7.931 61.466 1.00 50.00 C ATOM 3197 CG2 VAL 360 14.515 7.669 63.074 1.00 50.00 C ATOM 3198 N ALA 361 16.922 8.379 60.011 1.00 50.00 N ATOM 3199 CA ALA 361 18.342 8.563 60.016 1.00 50.00 C ATOM 3200 C ALA 361 18.781 8.904 61.393 1.00 50.00 C ATOM 3201 O ALA 361 18.331 9.883 61.986 1.00 50.00 O ATOM 3202 H ALA 361 16.401 8.912 59.507 1.00 50.00 H ATOM 3203 CB ALA 361 18.740 9.647 59.027 1.00 50.00 C ATOM 3204 N TRP 362 19.688 8.073 61.935 1.00 50.00 N ATOM 3205 CA TRP 362 20.214 8.330 63.234 1.00 50.00 C ATOM 3206 C TRP 362 21.032 9.567 63.131 1.00 50.00 C ATOM 3207 O TRP 362 20.885 10.496 63.924 1.00 50.00 O ATOM 3208 H TRP 362 19.963 7.350 61.472 1.00 50.00 H ATOM 3209 CB TRP 362 21.030 7.134 63.728 1.00 50.00 C ATOM 3210 HB2 TRP 362 21.979 7.125 63.314 1.00 50.00 H ATOM 3211 HB3 TRP 362 20.504 6.317 63.966 1.00 50.00 H ATOM 3212 CG TRP 362 21.601 7.324 65.100 1.00 50.00 C ATOM 3213 CD1 TRP 362 20.990 7.045 66.288 1.00 50.00 C ATOM 3214 HE1 TRP 362 21.616 7.240 68.242 1.00 50.00 H ATOM 3215 NE1 TRP 362 21.826 7.350 67.335 1.00 50.00 N ATOM 3216 CD2 TRP 362 22.900 7.834 65.426 1.00 50.00 C ATOM 3217 CE2 TRP 362 23.005 7.836 66.829 1.00 50.00 C ATOM 3218 CH2 TRP 362 25.195 8.715 66.725 1.00 50.00 C ATOM 3219 CZ2 TRP 362 24.152 8.276 67.491 1.00 50.00 C ATOM 3220 CE3 TRP 362 23.983 8.289 64.668 1.00 50.00 C ATOM 3221 CZ3 TRP 362 25.117 8.723 65.329 1.00 50.00 C ATOM 3222 N ASN 363 21.916 9.617 62.116 1.00 50.00 N ATOM 3223 CA ASN 363 22.732 10.778 62.000 1.00 50.00 C ATOM 3224 C ASN 363 22.513 11.384 60.662 1.00 50.00 C ATOM 3225 O ASN 363 23.100 10.981 59.657 1.00 50.00 O ATOM 3226 H ASN 363 22.000 8.947 61.522 1.00 50.00 H ATOM 3227 CB ASN 363 24.202 10.424 62.234 1.00 50.00 C ATOM 3228 CG ASN 363 25.106 11.642 62.213 1.00 50.00 C ATOM 3229 OD1 ASN 363 24.687 12.743 62.571 1.00 50.00 O ATOM 3230 HD21 ASN 363 26.926 12.138 61.758 1.00 50.00 H ATOM 3231 HD22 ASN 363 26.615 10.627 61.537 1.00 50.00 H ATOM 3232 ND2 ASN 363 26.350 11.448 61.791 1.00 50.00 N ATOM 3233 N PRO 364 21.672 12.365 60.636 1.00 50.00 N ATOM 3234 CA PRO 364 21.525 13.127 59.440 1.00 50.00 C ATOM 3235 C PRO 364 22.727 13.986 59.563 1.00 50.00 C ATOM 3236 O PRO 364 23.292 14.012 60.656 1.00 50.00 O ATOM 3237 CB PRO 364 20.173 13.824 59.610 1.00 50.00 C ATOM 3238 CD PRO 364 20.655 12.811 61.724 1.00 50.00 C ATOM 3239 CG PRO 364 20.036 14.021 61.082 1.00 50.00 C ATOM 3240 N ASN 365 23.167 14.670 58.494 1.00 50.00 N ATOM 3241 CA ASN 365 24.287 15.529 58.721 1.00 50.00 C ATOM 3242 C ASN 365 23.781 16.518 59.709 1.00 50.00 C ATOM 3243 O ASN 365 22.570 16.702 59.820 1.00 50.00 O ATOM 3244 H ASN 365 22.802 14.613 57.673 1.00 50.00 H ATOM 3245 CB ASN 365 24.770 16.139 57.403 1.00 50.00 C ATOM 3246 CG ASN 365 25.417 15.116 56.490 1.00 50.00 C ATOM 3247 OD1 ASN 365 25.834 14.047 56.936 1.00 50.00 O ATOM 3248 HD21 ASN 365 25.876 14.870 54.621 1.00 50.00 H ATOM 3249 HD22 ASN 365 25.183 16.233 54.920 1.00 50.00 H ATOM 3250 ND2 ASN 365 25.501 15.442 55.205 1.00 50.00 N ATOM 3251 N LEU 366 24.678 17.126 60.506 1.00 50.00 N ATOM 3252 CA LEU 366 24.182 18.028 61.496 1.00 50.00 C ATOM 3253 C LEU 366 23.870 19.295 60.785 1.00 50.00 C ATOM 3254 O LEU 366 24.584 20.288 60.919 1.00 50.00 O ATOM 3255 H LEU 366 25.564 16.983 60.431 1.00 50.00 H ATOM 3256 CB LEU 366 25.210 18.217 62.613 1.00 50.00 C ATOM 3257 CG LEU 366 25.624 16.955 63.374 1.00 50.00 C ATOM 3258 CD1 LEU 366 26.693 17.278 64.407 1.00 50.00 C ATOM 3259 CD2 LEU 366 24.419 16.311 64.042 1.00 50.00 C ATOM 3260 N TRP 367 22.764 19.280 60.021 1.00 50.00 N ATOM 3261 CA TRP 367 22.359 20.412 59.260 1.00 50.00 C ATOM 3262 C TRP 367 20.868 20.512 59.358 1.00 50.00 C ATOM 3263 O TRP 367 20.157 19.510 59.386 1.00 50.00 O ATOM 3264 H TRP 367 22.275 18.525 59.999 1.00 50.00 H ATOM 3265 CB TRP 367 22.829 20.278 57.810 1.00 50.00 C ATOM 3266 HB2 TRP 367 22.781 21.184 57.311 1.00 50.00 H ATOM 3267 HB3 TRP 367 22.683 19.385 57.385 1.00 50.00 H ATOM 3268 CG TRP 367 24.320 20.249 57.664 1.00 50.00 C ATOM 3269 CD1 TRP 367 25.095 19.159 57.392 1.00 50.00 C ATOM 3270 HE1 TRP 367 27.131 18.936 57.159 1.00 50.00 H ATOM 3271 NE1 TRP 367 26.419 19.521 57.332 1.00 50.00 N ATOM 3272 CD2 TRP 367 25.216 21.361 57.780 1.00 50.00 C ATOM 3273 CE2 TRP 367 26.518 20.870 57.568 1.00 50.00 C ATOM 3274 CH2 TRP 367 27.446 23.020 57.870 1.00 50.00 C ATOM 3275 CZ2 TRP 367 27.642 21.692 57.611 1.00 50.00 C ATOM 3276 CE3 TRP 367 25.045 22.723 58.044 1.00 50.00 C ATOM 3277 CZ3 TRP 367 26.162 23.534 58.086 1.00 50.00 C ATOM 3278 N LYS 368 20.369 21.762 59.408 1.00 50.00 N ATOM 3279 CA LYS 368 18.989 22.077 59.651 1.00 50.00 C ATOM 3280 C LYS 368 18.131 21.628 58.518 1.00 50.00 C ATOM 3281 O LYS 368 18.558 21.607 57.370 1.00 50.00 O ATOM 3282 H LYS 368 20.966 22.422 59.277 1.00 50.00 H ATOM 3283 CB LYS 368 18.815 23.580 59.879 1.00 50.00 C ATOM 3284 CD LYS 368 19.220 25.582 61.338 1.00 50.00 C ATOM 3285 CE LYS 368 19.875 26.097 62.610 1.00 50.00 C ATOM 3286 CG LYS 368 19.465 24.093 61.155 1.00 50.00 C ATOM 3287 HZ1 LYS 368 20.052 27.824 63.547 1.00 50.00 H ATOM 3288 HZ2 LYS 368 18.784 27.724 62.845 1.00 50.00 H ATOM 3289 HZ3 LYS 368 20.003 28.001 62.105 1.00 50.00 H ATOM 3290 NZ LYS 368 19.657 27.558 62.795 1.00 50.00 N ATOM 3291 N LYS 369 16.880 21.237 58.831 1.00 50.00 N ATOM 3292 CA LYS 369 15.937 20.825 57.830 1.00 50.00 C ATOM 3293 C LYS 369 15.240 22.058 57.348 1.00 50.00 C ATOM 3294 O LYS 369 15.303 23.107 57.985 1.00 50.00 O ATOM 3295 H LYS 369 16.642 21.238 59.698 1.00 50.00 H ATOM 3296 CB LYS 369 14.961 19.796 58.404 1.00 50.00 C ATOM 3297 CD LYS 369 13.156 19.252 60.060 1.00 50.00 C ATOM 3298 CE LYS 369 12.231 19.803 61.133 1.00 50.00 C ATOM 3299 CG LYS 369 14.088 20.329 59.528 1.00 50.00 C ATOM 3300 HZ1 LYS 369 10.807 19.109 62.309 1.00 50.00 H ATOM 3301 HZ2 LYS 369 11.822 18.102 62.047 1.00 50.00 H ATOM 3302 HZ3 LYS 369 10.831 18.416 61.032 1.00 50.00 H ATOM 3303 NZ LYS 369 11.333 18.753 61.686 1.00 50.00 N ATOM 3304 N GLY 370 14.552 21.960 56.195 1.00 50.00 N ATOM 3305 CA GLY 370 13.881 23.103 55.650 1.00 50.00 C ATOM 3306 C GLY 370 12.763 23.451 56.573 1.00 50.00 C ATOM 3307 O GLY 370 12.317 22.625 57.366 1.00 50.00 O ATOM 3308 H GLY 370 14.516 21.170 55.766 1.00 50.00 H ATOM 3309 N THR 371 12.247 24.690 56.447 1.00 50.00 N ATOM 3310 CA THR 371 11.234 25.180 57.335 1.00 50.00 C ATOM 3311 C THR 371 10.045 24.292 57.228 1.00 50.00 C ATOM 3312 O THR 371 10.028 23.338 56.456 1.00 50.00 O ATOM 3313 H THR 371 12.555 25.214 55.783 1.00 50.00 H ATOM 3314 CB THR 371 10.860 26.640 57.015 1.00 50.00 C ATOM 3315 HG1 THR 371 9.633 26.240 55.648 1.00 50.00 H ATOM 3316 OG1 THR 371 10.312 26.716 55.693 1.00 50.00 O ATOM 3317 CG2 THR 371 12.090 27.532 57.083 1.00 50.00 C ATOM 3318 N ASN 372 9.004 24.575 58.026 1.00 50.00 N ATOM 3319 CA ASN 372 7.873 23.701 58.015 1.00 50.00 C ATOM 3320 C ASN 372 7.240 23.765 56.669 1.00 50.00 C ATOM 3321 O ASN 372 7.360 24.753 55.948 1.00 50.00 O ATOM 3322 H ASN 372 9.009 25.299 58.561 1.00 50.00 H ATOM 3323 CB ASN 372 6.894 24.077 59.128 1.00 50.00 C ATOM 3324 CG ASN 372 7.443 23.784 60.511 1.00 50.00 C ATOM 3325 OD1 ASN 372 8.241 22.866 60.690 1.00 50.00 O ATOM 3326 HD21 ASN 372 7.309 24.436 62.334 1.00 50.00 H ATOM 3327 HD22 ASN 372 6.429 25.229 61.321 1.00 50.00 H ATOM 3328 ND2 ASN 372 7.015 24.568 61.494 1.00 50.00 N ATOM 3329 N GLY 373 6.575 22.659 56.292 1.00 50.00 N ATOM 3330 CA GLY 373 5.893 22.565 55.040 1.00 50.00 C ATOM 3331 C GLY 373 6.851 21.920 54.100 1.00 50.00 C ATOM 3332 O GLY 373 6.470 21.182 53.193 1.00 50.00 O ATOM 3333 H GLY 373 6.569 21.962 56.862 1.00 50.00 H ATOM 3334 N TYR 374 8.144 22.200 54.322 1.00 50.00 N ATOM 3335 CA TYR 374 9.237 21.646 53.577 1.00 50.00 C ATOM 3336 C TYR 374 9.338 20.176 53.828 1.00 50.00 C ATOM 3337 O TYR 374 9.493 19.395 52.886 1.00 50.00 O ATOM 3338 H TYR 374 8.303 22.780 54.992 1.00 50.00 H ATOM 3339 CB TYR 374 10.546 22.348 53.946 1.00 50.00 C ATOM 3340 CG TYR 374 10.641 23.771 53.446 1.00 50.00 C ATOM 3341 HH TYR 374 10.127 27.952 51.860 1.00 50.00 H ATOM 3342 OH TYR 374 10.886 27.686 52.066 1.00 50.00 O ATOM 3343 CZ TYR 374 10.806 26.390 52.523 1.00 50.00 C ATOM 3344 CD1 TYR 374 9.506 24.457 53.032 1.00 50.00 C ATOM 3345 CE1 TYR 374 9.583 25.757 52.573 1.00 50.00 C ATOM 3346 CD2 TYR 374 11.865 24.424 53.388 1.00 50.00 C ATOM 3347 CE2 TYR 374 11.962 25.725 52.932 1.00 50.00 C ATOM 3348 N PRO 375 9.224 19.753 55.063 1.00 50.00 N ATOM 3349 CA PRO 375 9.490 18.381 55.337 1.00 50.00 C ATOM 3350 C PRO 375 8.519 17.433 54.783 1.00 50.00 C ATOM 3351 O PRO 375 7.412 17.811 54.403 1.00 50.00 O ATOM 3352 CB PRO 375 9.475 18.299 56.864 1.00 50.00 C ATOM 3353 CD PRO 375 8.795 20.526 56.310 1.00 50.00 C ATOM 3354 CG PRO 375 8.573 19.408 57.290 1.00 50.00 C ATOM 3355 N ILE 376 8.976 16.180 54.718 1.00 50.00 N ATOM 3356 CA ILE 376 8.169 15.130 54.228 1.00 50.00 C ATOM 3357 C ILE 376 6.884 15.192 54.980 1.00 50.00 C ATOM 3358 O ILE 376 6.873 15.436 56.186 1.00 50.00 O ATOM 3359 H ILE 376 9.816 16.011 54.995 1.00 50.00 H ATOM 3360 CB ILE 376 8.866 13.765 54.377 1.00 50.00 C ATOM 3361 CD1 ILE 376 10.993 12.500 53.764 1.00 50.00 C ATOM 3362 CG1 ILE 376 10.124 13.711 53.506 1.00 50.00 C ATOM 3363 CG2 ILE 376 7.903 12.635 54.049 1.00 50.00 C ATOM 3364 N PHE 377 5.763 15.032 54.250 1.00 50.00 N ATOM 3365 CA PHE 377 4.473 15.075 54.867 1.00 50.00 C ATOM 3366 C PHE 377 4.357 13.810 55.643 1.00 50.00 C ATOM 3367 O PHE 377 4.810 12.760 55.188 1.00 50.00 O ATOM 3368 H PHE 377 5.833 14.898 53.363 1.00 50.00 H ATOM 3369 CB PHE 377 3.378 15.229 53.809 1.00 50.00 C ATOM 3370 CG PHE 377 1.994 15.345 54.381 1.00 50.00 C ATOM 3371 CZ PHE 377 -0.567 15.555 55.440 1.00 50.00 C ATOM 3372 CD1 PHE 377 1.550 16.541 54.917 1.00 50.00 C ATOM 3373 CE1 PHE 377 0.277 16.649 55.444 1.00 50.00 C ATOM 3374 CD2 PHE 377 1.136 14.259 54.384 1.00 50.00 C ATOM 3375 CE2 PHE 377 -0.137 14.367 54.912 1.00 50.00 C ATOM 3376 N GLN 378 3.722 13.893 56.831 1.00 50.00 N ATOM 3377 CA GLN 378 3.580 12.792 57.739 1.00 50.00 C ATOM 3378 C GLN 378 4.903 12.105 57.834 1.00 50.00 C ATOM 3379 O GLN 378 4.966 10.884 57.979 1.00 50.00 O ATOM 3380 H GLN 378 3.377 14.698 57.041 1.00 50.00 H ATOM 3381 CB GLN 378 2.478 11.843 57.262 1.00 50.00 C ATOM 3382 CD GLN 378 0.030 11.500 56.749 1.00 50.00 C ATOM 3383 CG GLN 378 1.099 12.478 57.193 1.00 50.00 C ATOM 3384 OE1 GLN 378 0.326 10.481 56.125 1.00 50.00 O ATOM 3385 HE21 GLN 378 -1.895 11.261 56.831 1.00 50.00 H ATOM 3386 HE22 GLN 378 -1.396 12.563 57.527 1.00 50.00 H ATOM 3387 NE2 GLN 378 -1.222 11.808 57.070 1.00 50.00 N ATOM 3388 N TRP 379 6.005 12.878 57.772 1.00 50.00 N ATOM 3389 CA TRP 379 7.278 12.227 57.836 1.00 50.00 C ATOM 3390 C TRP 379 8.319 13.299 57.925 1.00 50.00 C ATOM 3391 O TRP 379 8.008 14.450 58.227 1.00 50.00 O ATOM 3392 H TRP 379 5.961 13.773 57.692 1.00 50.00 H ATOM 3393 CB TRP 379 7.480 11.325 56.617 1.00 50.00 C ATOM 3394 HB2 TRP 379 7.887 11.848 55.822 1.00 50.00 H ATOM 3395 HB3 TRP 379 6.842 10.561 56.530 1.00 50.00 H ATOM 3396 CG TRP 379 8.701 10.461 56.707 1.00 50.00 C ATOM 3397 CD1 TRP 379 9.792 10.496 55.887 1.00 50.00 C ATOM 3398 HE1 TRP 379 11.537 9.399 55.863 1.00 50.00 H ATOM 3399 NE1 TRP 379 10.712 9.554 56.280 1.00 50.00 N ATOM 3400 CD2 TRP 379 8.957 9.434 57.672 1.00 50.00 C ATOM 3401 CE2 TRP 379 10.220 8.889 57.376 1.00 50.00 C ATOM 3402 CH2 TRP 379 10.062 7.375 59.180 1.00 50.00 C ATOM 3403 CZ2 TRP 379 10.783 7.858 58.125 1.00 50.00 C ATOM 3404 CE3 TRP 379 8.241 8.921 58.757 1.00 50.00 C ATOM 3405 CZ3 TRP 379 8.803 7.898 59.498 1.00 50.00 C ATOM 3406 N SER 380 9.600 12.938 57.710 1.00 50.00 N ATOM 3407 CA SER 380 10.664 13.895 57.814 1.00 50.00 C ATOM 3408 C SER 380 11.914 13.160 57.466 1.00 50.00 C ATOM 3409 O SER 380 11.916 12.287 56.602 1.00 50.00 O ATOM 3410 H SER 380 9.784 12.083 57.497 1.00 50.00 H ATOM 3411 CB SER 380 10.704 14.501 59.218 1.00 50.00 C ATOM 3412 HG SER 380 11.495 16.127 58.760 1.00 50.00 H ATOM 3413 OG SER 380 11.678 15.526 59.303 1.00 50.00 O ATOM 3414 N GLU 381 13.041 13.529 58.098 1.00 50.00 N ATOM 3415 CA GLU 381 14.231 12.783 57.832 1.00 50.00 C ATOM 3416 C GLU 381 14.160 11.556 58.731 1.00 50.00 C ATOM 3417 O GLU 381 14.169 10.419 58.187 1.00 50.00 O ATOM 3418 H GLU 381 13.062 14.221 58.673 1.00 50.00 H ATOM 3419 OXT GLU 381 14.097 11.735 59.977 1.00 50.00 O ATOM 3420 CB GLU 381 15.471 13.642 58.092 1.00 50.00 C ATOM 3421 CD GLU 381 16.835 15.671 57.460 1.00 50.00 C ATOM 3422 CG GLU 381 15.588 14.855 57.183 1.00 50.00 C ATOM 3423 OE1 GLU 381 17.782 15.123 58.062 1.00 50.00 O ATOM 3424 OE2 GLU 381 16.865 16.859 57.073 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.37 41.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 108.23 18.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.48 40.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 90.82 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.27 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 92.68 36.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 94.19 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 92.08 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 109.65 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.99 59.1 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 46.59 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 44.96 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 48.81 60.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 50.79 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 35.83 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 30.10 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 33.68 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 35.83 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.52 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.52 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.52 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.14 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.14 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2627 CRMSCA SECONDARY STRUCTURE . . 5.34 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.45 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.32 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.31 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.42 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.60 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.43 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.78 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.98 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.82 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.97 120 100.0 120 CRMSSC BURIED . . . . . . . . 9.19 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.15 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.79 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.46 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.38 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.695 0.752 0.783 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 45.093 0.824 0.840 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.453 0.745 0.778 26 100.0 26 ERRCA BURIED . . . . . . . . 43.952 0.786 0.808 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.559 0.748 0.780 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 44.987 0.820 0.837 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.327 0.741 0.775 129 100.0 129 ERRMC BURIED . . . . . . . . 43.859 0.783 0.806 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.335 0.659 0.715 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 39.067 0.652 0.709 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 41.473 0.720 0.761 41 100.0 41 ERRSC SURFACE . . . . . . . . 39.146 0.654 0.711 120 100.0 120 ERRSC BURIED . . . . . . . . 41.604 0.719 0.758 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 40.997 0.705 0.748 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 43.366 0.774 0.802 85 100.0 85 ERRALL SURFACE . . . . . . . . 40.706 0.697 0.743 224 100.0 224 ERRALL BURIED . . . . . . . . 43.168 0.764 0.791 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 9 26 31 31 DISTCA CA (P) 0.00 0.00 6.45 29.03 83.87 31 DISTCA CA (RMS) 0.00 0.00 2.24 3.62 6.33 DISTCA ALL (N) 2 3 11 54 168 254 254 DISTALL ALL (P) 0.79 1.18 4.33 21.26 66.14 254 DISTALL ALL (RMS) 0.83 1.22 2.25 3.63 6.54 DISTALL END of the results output