####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS279_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS279_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 360 - 374 4.90 14.01 LCS_AVERAGE: 41.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.91 18.30 LCS_AVERAGE: 17.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 367 - 371 0.59 19.29 LCS_AVERAGE: 11.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 11 0 0 3 3 4 5 6 6 8 9 10 12 12 14 17 17 18 19 19 20 LCS_GDT A 352 A 352 3 4 11 3 3 3 3 5 5 6 6 8 9 10 12 12 14 17 17 18 19 19 20 LCS_GDT E 353 E 353 3 4 11 3 3 3 3 5 5 6 6 8 9 10 11 12 13 17 17 18 19 19 20 LCS_GDT E 354 E 354 3 4 11 3 3 3 3 5 5 6 6 8 9 10 11 12 13 17 17 18 19 19 20 LCS_GDT L 355 L 355 3 4 11 1 3 3 3 5 5 6 6 7 9 10 11 12 13 17 17 18 19 19 20 LCS_GDT G 356 G 356 3 4 11 0 3 3 3 5 5 5 6 8 9 10 12 12 14 17 17 18 19 19 20 LCS_GDT N 357 N 357 3 3 11 3 3 3 3 3 4 5 6 8 9 10 12 14 15 17 17 18 19 19 20 LCS_GDT I 358 I 358 3 3 11 3 3 3 3 4 4 6 7 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT I 359 I 359 3 3 12 3 3 3 3 3 4 6 7 9 11 13 14 15 16 17 17 18 19 19 20 LCS_GDT V 360 V 360 3 4 15 3 3 4 4 5 5 6 8 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT A 361 A 361 3 5 15 3 3 4 4 5 5 7 8 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT W 362 W 362 4 5 15 4 4 4 4 6 7 7 8 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT N 363 N 363 4 5 15 4 4 4 4 6 7 7 8 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT P 364 P 364 4 5 15 4 4 4 4 6 7 7 8 10 12 13 14 15 16 16 17 18 19 19 20 LCS_GDT N 365 N 365 4 5 15 4 4 4 4 6 7 7 8 10 12 13 14 15 16 16 17 17 19 19 20 LCS_GDT L 366 L 366 3 7 15 3 3 3 4 6 7 7 8 10 11 13 14 15 16 16 17 17 18 19 20 LCS_GDT W 367 W 367 5 7 15 3 5 5 6 6 6 7 7 8 8 10 10 12 13 14 14 16 17 18 18 LCS_GDT K 368 K 368 5 7 15 4 5 5 6 6 7 7 8 9 11 12 12 14 16 16 17 17 17 18 20 LCS_GDT K 369 K 369 5 7 15 4 5 5 6 6 7 7 8 10 11 12 14 15 16 16 17 17 18 18 20 LCS_GDT G 370 G 370 5 7 15 4 5 5 6 6 6 7 8 10 12 13 14 15 16 16 17 17 18 19 20 LCS_GDT T 371 T 371 5 7 15 4 5 5 6 6 6 7 8 10 12 13 14 15 16 16 17 17 18 19 20 LCS_GDT N 372 N 372 3 7 15 3 3 5 6 6 7 9 9 10 12 13 14 15 16 16 17 17 18 19 20 LCS_GDT G 373 G 373 4 6 15 3 4 5 6 6 6 9 9 10 12 13 14 15 16 16 17 17 18 19 20 LCS_GDT Y 374 Y 374 4 6 15 3 4 5 6 6 7 9 9 10 12 13 14 15 16 17 17 18 19 19 20 LCS_GDT P 375 P 375 4 6 11 3 4 4 6 6 6 9 9 9 9 10 12 12 14 17 17 18 19 19 20 LCS_GDT I 376 I 376 4 6 11 3 4 5 6 6 7 9 9 9 9 11 13 13 14 17 17 18 19 19 20 LCS_GDT F 377 F 377 4 6 11 3 3 5 6 6 7 9 9 9 9 11 13 13 14 15 15 17 19 19 19 LCS_GDT Q 378 Q 378 3 6 11 3 3 5 6 6 7 9 9 9 9 11 13 13 14 15 15 16 19 19 19 LCS_GDT W 379 W 379 3 6 11 3 3 4 4 6 7 9 9 9 9 11 13 13 14 15 15 17 19 19 19 LCS_GDT S 380 S 380 3 6 11 3 3 3 4 6 7 9 9 9 9 11 13 13 14 15 16 18 19 19 19 LCS_GDT E 381 E 381 3 6 11 3 3 4 4 6 6 6 6 6 7 11 13 13 14 17 17 18 19 19 20 LCS_AVERAGE LCS_A: 23.55 ( 11.65 17.17 41.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 6 7 9 9 10 12 13 14 15 16 17 17 18 19 19 20 GDT PERCENT_AT 12.90 16.13 16.13 19.35 19.35 22.58 29.03 29.03 32.26 38.71 41.94 45.16 48.39 51.61 54.84 54.84 58.06 61.29 61.29 64.52 GDT RMS_LOCAL 0.16 0.59 0.59 1.12 1.12 2.12 2.75 2.75 3.55 3.92 4.10 4.38 4.56 4.80 5.66 5.12 5.84 6.17 6.17 6.50 GDT RMS_ALL_AT 16.81 19.29 19.29 18.61 18.61 17.24 18.67 18.67 14.31 12.79 12.63 13.20 12.99 13.22 10.93 13.02 11.21 10.95 10.95 11.69 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 26.543 0 0.675 0.896 28.601 0.000 0.000 LGA A 352 A 352 25.671 0 0.595 0.586 27.204 0.000 0.000 LGA E 353 E 353 25.252 0 0.569 1.201 30.628 0.000 0.000 LGA E 354 E 354 24.590 0 0.602 1.123 31.105 0.000 0.000 LGA L 355 L 355 18.932 0 0.601 1.342 21.335 0.000 0.000 LGA G 356 G 356 16.704 0 0.610 0.610 17.194 0.000 0.000 LGA N 357 N 357 18.252 0 0.577 0.532 24.903 0.000 0.000 LGA I 358 I 358 12.996 0 0.580 0.674 14.734 0.000 0.060 LGA I 359 I 359 12.336 0 0.569 0.644 13.634 0.000 0.000 LGA V 360 V 360 13.850 0 0.574 0.587 17.895 0.000 0.000 LGA A 361 A 361 17.686 0 0.606 0.543 18.061 0.000 0.000 LGA W 362 W 362 19.306 0 0.623 1.092 23.763 0.000 0.000 LGA N 363 N 363 25.739 0 0.044 0.957 28.725 0.000 0.000 LGA P 364 P 364 27.666 0 0.428 0.611 30.839 0.000 0.000 LGA N 365 N 365 33.579 0 0.358 0.949 37.977 0.000 0.000 LGA L 366 L 366 32.783 0 0.582 1.465 32.977 0.000 0.000 LGA W 367 W 367 30.965 0 0.658 1.381 34.835 0.000 0.000 LGA K 368 K 368 25.973 0 0.082 0.842 29.103 0.000 0.000 LGA K 369 K 369 19.048 0 0.061 0.201 22.897 0.000 0.000 LGA G 370 G 370 13.952 0 0.109 0.109 15.423 0.000 0.000 LGA T 371 T 371 9.058 0 0.631 0.518 12.051 11.190 7.007 LGA N 372 N 372 2.964 0 0.614 1.300 8.135 61.667 38.274 LGA G 373 G 373 3.193 0 0.644 0.644 3.193 61.905 61.905 LGA Y 374 Y 374 2.180 0 0.090 1.244 10.000 64.762 39.524 LGA P 375 P 375 3.353 0 0.026 0.063 5.748 57.381 44.830 LGA I 376 I 376 1.804 0 0.356 1.110 5.997 67.143 49.702 LGA F 377 F 377 2.627 0 0.391 1.344 7.549 55.595 38.355 LGA Q 378 Q 378 1.221 0 0.229 0.550 3.451 81.429 69.894 LGA W 379 W 379 3.087 0 0.652 0.929 8.373 44.881 24.830 LGA S 380 S 380 3.435 0 0.132 0.131 5.277 43.929 41.984 LGA E 381 E 381 7.616 0 0.054 1.052 14.746 17.262 7.667 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 10.278 10.180 12.045 18.295 13.678 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.75 29.839 27.043 0.316 LGA_LOCAL RMSD: 2.748 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.669 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 10.278 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.296316 * X + 0.843681 * Y + 0.447660 * Z + -74.069618 Y_new = -0.948470 * X + 0.204847 * Y + 0.241749 * Z + 8.439837 Z_new = 0.112257 * X + -0.496226 * Y + 0.860906 * Z + -26.513214 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.267989 -0.112494 -0.522886 [DEG: -72.6504 -6.4454 -29.9591 ] ZXZ: 2.065952 0.533749 2.919115 [DEG: 118.3703 30.5816 167.2530 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS279_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS279_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.75 27.043 10.28 REMARK ---------------------------------------------------------- MOLECULE T0537TS279_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1P4D ATOM 2531 N SER 351 29.082 15.443 45.261 1.00 99.99 N ATOM 2532 CA SER 351 30.557 15.274 45.265 1.00 99.99 C ATOM 2533 C SER 351 31.331 16.442 45.899 1.00 99.99 C ATOM 2534 O SER 351 32.447 16.269 46.385 1.00 99.99 O ATOM 2535 CB SER 351 31.107 14.969 43.870 1.00 99.99 C ATOM 2536 OG SER 351 31.524 13.606 43.771 1.00 99.99 O ATOM 2537 N ALA 352 30.731 17.630 45.854 1.00 99.99 N ATOM 2538 CA ALA 352 31.288 18.857 46.454 1.00 99.99 C ATOM 2539 C ALA 352 30.211 19.694 47.153 1.00 99.99 C ATOM 2540 O ALA 352 29.027 19.625 46.823 1.00 99.99 O ATOM 2541 CB ALA 352 31.959 19.719 45.385 1.00 99.99 C ATOM 2542 N GLU 353 30.678 20.485 48.116 1.00 99.99 N ATOM 2543 CA GLU 353 29.874 21.486 48.848 1.00 99.99 C ATOM 2544 C GLU 353 29.550 22.673 47.919 1.00 99.99 C ATOM 2545 O GLU 353 30.336 23.608 47.769 1.00 99.99 O ATOM 2546 CB GLU 353 30.666 21.944 50.081 1.00 99.99 C ATOM 2547 CG GLU 353 30.909 20.804 51.077 1.00 99.99 C ATOM 2548 CD GLU 353 32.067 21.137 52.017 1.00 99.99 C ATOM 2549 OE1 GLU 353 33.212 20.823 51.623 1.00 99.99 O ATOM 2550 OE2 GLU 353 31.791 21.708 53.093 1.00 99.99 O ATOM 2551 N GLU 354 28.448 22.510 47.189 1.00 99.99 N ATOM 2552 CA GLU 354 28.000 23.435 46.125 1.00 99.99 C ATOM 2553 C GLU 354 26.504 23.199 45.831 1.00 99.99 C ATOM 2554 O GLU 354 25.945 22.163 46.188 1.00 99.99 O ATOM 2555 CB GLU 354 28.841 23.128 44.878 1.00 99.99 C ATOM 2556 CG GLU 354 28.763 24.173 43.760 1.00 99.99 C ATOM 2557 CD GLU 354 28.988 23.567 42.368 1.00 99.99 C ATOM 2558 OE1 GLU 354 28.354 24.108 41.438 1.00 99.99 O ATOM 2559 OE2 GLU 354 29.706 22.543 42.271 1.00 99.99 O ATOM 2560 N LEU 355 25.872 24.200 45.219 1.00 99.99 N ATOM 2561 CA LEU 355 24.439 24.187 44.854 1.00 99.99 C ATOM 2562 C LEU 355 24.046 23.014 43.936 1.00 99.99 C ATOM 2563 O LEU 355 24.684 22.762 42.915 1.00 99.99 O ATOM 2564 CB LEU 355 24.107 25.527 44.179 1.00 99.99 C ATOM 2565 CG LEU 355 22.635 25.702 43.776 1.00 99.99 C ATOM 2566 CD1 LEU 355 21.723 25.868 44.994 1.00 99.99 C ATOM 2567 CD2 LEU 355 22.494 26.886 42.817 1.00 99.99 C ATOM 2568 N GLY 356 22.960 22.353 44.353 1.00 99.99 N ATOM 2569 CA GLY 356 22.287 21.274 43.603 1.00 99.99 C ATOM 2570 C GLY 356 20.768 21.503 43.627 1.00 99.99 C ATOM 2571 O GLY 356 20.231 21.994 44.620 1.00 99.99 O ATOM 2572 N ASN 357 20.093 20.992 42.600 1.00 99.99 N ATOM 2573 CA ASN 357 18.645 21.221 42.406 1.00 99.99 C ATOM 2574 C ASN 357 17.812 19.988 42.781 1.00 99.99 C ATOM 2575 O ASN 357 17.947 18.916 42.190 1.00 99.99 O ATOM 2576 CB ASN 357 18.357 21.647 40.960 1.00 99.99 C ATOM 2577 CG ASN 357 18.990 22.996 40.596 1.00 99.99 C ATOM 2578 OD1 ASN 357 19.124 23.915 41.392 1.00 99.99 O ATOM 2579 ND2 ASN 357 19.373 23.145 39.348 1.00 99.99 N ATOM 2580 N ILE 358 16.899 20.211 43.721 1.00 99.99 N ATOM 2581 CA ILE 358 16.101 19.141 44.360 1.00 99.99 C ATOM 2582 C ILE 358 14.613 19.302 43.991 1.00 99.99 C ATOM 2583 O ILE 358 13.920 20.193 44.481 1.00 99.99 O ATOM 2584 CB ILE 358 16.337 19.159 45.888 1.00 99.99 C ATOM 2585 CG1 ILE 358 17.838 19.037 46.208 1.00 99.99 C ATOM 2586 CG2 ILE 358 15.579 18.012 46.576 1.00 99.99 C ATOM 2587 CD1 ILE 358 18.233 19.683 47.540 1.00 99.99 C ATOM 2588 N ILE 359 14.187 18.478 43.036 1.00 99.99 N ATOM 2589 CA ILE 359 12.792 18.448 42.541 1.00 99.99 C ATOM 2590 C ILE 359 11.898 17.687 43.543 1.00 99.99 C ATOM 2591 O ILE 359 11.808 16.460 43.531 1.00 99.99 O ATOM 2592 CB ILE 359 12.733 17.849 41.117 1.00 99.99 C ATOM 2593 CG1 ILE 359 13.686 18.598 40.170 1.00 99.99 C ATOM 2594 CG2 ILE 359 11.298 17.918 40.564 1.00 99.99 C ATOM 2595 CD1 ILE 359 14.076 17.795 38.921 1.00 99.99 C ATOM 2596 N VAL 360 11.344 18.455 44.477 1.00 99.99 N ATOM 2597 CA VAL 360 10.439 17.949 45.537 1.00 99.99 C ATOM 2598 C VAL 360 9.063 17.560 44.952 1.00 99.99 C ATOM 2599 O VAL 360 8.200 18.404 44.717 1.00 99.99 O ATOM 2600 CB VAL 360 10.321 18.966 46.696 1.00 99.99 C ATOM 2601 CG1 VAL 360 9.458 18.432 47.846 1.00 99.99 C ATOM 2602 CG2 VAL 360 11.692 19.351 47.266 1.00 99.99 C ATOM 2603 N ALA 361 8.961 16.282 44.598 1.00 99.99 N ATOM 2604 CA ALA 361 7.720 15.655 44.097 1.00 99.99 C ATOM 2605 C ALA 361 6.635 15.498 45.179 1.00 99.99 C ATOM 2606 O ALA 361 6.790 14.744 46.140 1.00 99.99 O ATOM 2607 CB ALA 361 8.056 14.303 43.460 1.00 99.99 C ATOM 2608 N TRP 362 5.622 16.354 45.072 1.00 99.99 N ATOM 2609 CA TRP 362 4.437 16.352 45.957 1.00 99.99 C ATOM 2610 C TRP 362 3.156 16.676 45.166 1.00 99.99 C ATOM 2611 O TRP 362 3.212 17.363 44.147 1.00 99.99 O ATOM 2612 CB TRP 362 4.659 17.346 47.105 1.00 99.99 C ATOM 2613 CG TRP 362 3.587 17.220 48.193 1.00 99.99 C ATOM 2614 CD1 TRP 362 3.473 16.227 49.070 1.00 99.99 C ATOM 2615 CD2 TRP 362 2.499 18.060 48.374 1.00 99.99 C ATOM 2616 NE1 TRP 362 2.363 16.394 49.792 1.00 99.99 N ATOM 2617 CE2 TRP 362 1.743 17.502 49.394 1.00 99.99 C ATOM 2618 CE3 TRP 362 2.136 19.274 47.811 1.00 99.99 C ATOM 2619 CZ2 TRP 362 0.609 18.162 49.853 1.00 99.99 C ATOM 2620 CZ3 TRP 362 1.015 19.943 48.285 1.00 99.99 C ATOM 2621 CH2 TRP 362 0.247 19.384 49.300 1.00 99.99 H ATOM 2622 N ASN 363 2.015 16.298 45.742 1.00 99.99 N ATOM 2623 CA ASN 363 0.697 16.393 45.079 1.00 99.99 C ATOM 2624 C ASN 363 -0.244 17.426 45.738 1.00 99.99 C ATOM 2625 O ASN 363 -0.907 17.110 46.733 1.00 99.99 O ATOM 2626 CB ASN 363 0.024 15.011 45.034 1.00 99.99 C ATOM 2627 CG ASN 363 0.809 13.964 44.236 1.00 99.99 C ATOM 2628 OD1 ASN 363 1.463 14.228 43.239 1.00 99.99 O ATOM 2629 ND2 ASN 363 0.716 12.722 44.654 1.00 99.99 N ATOM 2630 N PRO 364 -0.304 18.660 45.207 1.00 99.99 N ATOM 2631 CA PRO 364 -1.237 19.695 45.691 1.00 99.99 C ATOM 2632 C PRO 364 -2.665 19.491 45.154 1.00 99.99 C ATOM 2633 O PRO 364 -3.165 20.244 44.319 1.00 99.99 O ATOM 2634 CB PRO 364 -0.595 21.014 45.244 1.00 99.99 C ATOM 2635 CG PRO 364 0.106 20.641 43.938 1.00 99.99 C ATOM 2636 CD PRO 364 0.619 19.223 44.199 1.00 99.99 C ATOM 2637 N ASN 365 -3.348 18.502 45.728 1.00 99.99 N ATOM 2638 CA ASN 365 -4.748 18.181 45.372 1.00 99.99 C ATOM 2639 C ASN 365 -5.743 19.076 46.146 1.00 99.99 C ATOM 2640 O ASN 365 -6.649 18.612 46.841 1.00 99.99 O ATOM 2641 CB ASN 365 -4.975 16.678 45.595 1.00 99.99 C ATOM 2642 CG ASN 365 -6.237 16.169 44.889 1.00 99.99 C ATOM 2643 OD1 ASN 365 -6.393 16.243 43.679 1.00 99.99 O ATOM 2644 ND2 ASN 365 -7.181 15.659 45.646 1.00 99.99 N ATOM 2645 N LEU 366 -5.506 20.380 46.013 1.00 99.99 N ATOM 2646 CA LEU 366 -6.215 21.471 46.716 1.00 99.99 C ATOM 2647 C LEU 366 -6.096 22.780 45.923 1.00 99.99 C ATOM 2648 O LEU 366 -5.077 23.040 45.288 1.00 99.99 O ATOM 2649 CB LEU 366 -5.593 21.726 48.100 1.00 99.99 C ATOM 2650 CG LEU 366 -5.842 20.629 49.142 1.00 99.99 C ATOM 2651 CD1 LEU 366 -4.938 20.863 50.351 1.00 99.99 C ATOM 2652 CD2 LEU 366 -7.307 20.613 49.593 1.00 99.99 C ATOM 2653 N TRP 367 -7.136 23.604 46.037 1.00 99.99 N ATOM 2654 CA TRP 367 -7.177 24.962 45.450 1.00 99.99 C ATOM 2655 C TRP 367 -6.124 25.934 46.033 1.00 99.99 C ATOM 2656 O TRP 367 -5.698 26.875 45.366 1.00 99.99 O ATOM 2657 CB TRP 367 -8.598 25.517 45.614 1.00 99.99 C ATOM 2658 CG TRP 367 -8.837 26.772 44.769 1.00 99.99 C ATOM 2659 CD1 TRP 367 -8.957 26.804 43.443 1.00 99.99 C ATOM 2660 CD2 TRP 367 -8.739 28.086 45.202 1.00 99.99 C ATOM 2661 NE1 TRP 367 -8.919 28.068 43.019 1.00 99.99 N ATOM 2662 CE2 TRP 367 -8.785 28.879 44.066 1.00 99.99 C ATOM 2663 CE3 TRP 367 -8.605 28.665 46.456 1.00 99.99 C ATOM 2664 CZ2 TRP 367 -8.684 30.260 44.181 1.00 99.99 C ATOM 2665 CZ3 TRP 367 -8.499 30.045 46.571 1.00 99.99 C ATOM 2666 CH2 TRP 367 -8.539 30.843 45.434 1.00 99.99 H ATOM 2667 N LYS 368 -5.670 25.642 47.252 1.00 99.99 N ATOM 2668 CA LYS 368 -4.685 26.461 47.986 1.00 99.99 C ATOM 2669 C LYS 368 -3.373 25.697 48.209 1.00 99.99 C ATOM 2670 O LYS 368 -3.369 24.495 48.478 1.00 99.99 O ATOM 2671 CB LYS 368 -5.247 26.885 49.347 1.00 99.99 C ATOM 2672 CG LYS 368 -6.385 27.898 49.218 1.00 99.99 C ATOM 2673 CD LYS 368 -6.950 28.268 50.590 1.00 99.99 C ATOM 2674 CE LYS 368 -8.101 29.265 50.452 1.00 99.99 C ATOM 2675 NZ LYS 368 -8.645 29.625 51.769 1.00 99.99 N ATOM 2676 N LYS 369 -2.282 26.449 48.099 1.00 99.99 N ATOM 2677 CA LYS 369 -0.905 25.964 48.334 1.00 99.99 C ATOM 2678 C LYS 369 -0.624 25.614 49.805 1.00 99.99 C ATOM 2679 O LYS 369 -1.122 26.266 50.722 1.00 99.99 O ATOM 2680 CB LYS 369 0.116 27.020 47.895 1.00 99.99 C ATOM 2681 CG LYS 369 0.188 27.206 46.379 1.00 99.99 C ATOM 2682 CD LYS 369 1.282 28.220 46.040 1.00 99.99 C ATOM 2683 CE LYS 369 1.424 28.409 44.529 1.00 99.99 C ATOM 2684 NZ LYS 369 2.509 29.355 44.229 1.00 99.99 N ATOM 2685 N GLY 370 0.278 24.638 49.966 1.00 99.99 N ATOM 2686 CA GLY 370 0.827 24.244 51.279 1.00 99.99 C ATOM 2687 C GLY 370 2.336 24.524 51.294 1.00 99.99 C ATOM 2688 O GLY 370 3.049 24.161 50.358 1.00 99.99 O ATOM 2689 N THR 371 2.789 25.169 52.364 1.00 99.99 N ATOM 2690 CA THR 371 4.193 25.608 52.509 1.00 99.99 C ATOM 2691 C THR 371 4.948 24.843 53.603 1.00 99.99 C ATOM 2692 O THR 371 4.457 24.645 54.712 1.00 99.99 O ATOM 2693 CB THR 371 4.284 27.117 52.784 1.00 99.99 C ATOM 2694 OG1 THR 371 3.365 27.494 53.816 1.00 99.99 O ATOM 2695 CG2 THR 371 4.059 27.931 51.506 1.00 99.99 C ATOM 2696 N ASN 372 6.188 24.507 53.261 1.00 99.99 N ATOM 2697 CA ASN 372 7.095 23.718 54.119 1.00 99.99 C ATOM 2698 C ASN 372 8.433 24.439 54.341 1.00 99.99 C ATOM 2699 O ASN 372 8.933 25.122 53.447 1.00 99.99 O ATOM 2700 CB ASN 372 7.352 22.350 53.473 1.00 99.99 C ATOM 2701 CG ASN 372 6.086 21.489 53.393 1.00 99.99 C ATOM 2702 OD1 ASN 372 5.374 21.265 54.360 1.00 99.99 O ATOM 2703 ND2 ASN 372 5.827 20.926 52.234 1.00 99.99 N ATOM 2704 N GLY 373 9.001 24.210 55.532 1.00 99.99 N ATOM 2705 CA GLY 373 10.325 24.745 55.910 1.00 99.99 C ATOM 2706 C GLY 373 11.394 23.669 55.676 1.00 99.99 C ATOM 2707 O GLY 373 11.332 22.593 56.266 1.00 99.99 O ATOM 2708 N TYR 374 12.391 24.026 54.873 1.00 99.99 N ATOM 2709 CA TYR 374 13.422 23.081 54.399 1.00 99.99 C ATOM 2710 C TYR 374 14.843 23.466 54.861 1.00 99.99 C ATOM 2711 O TYR 374 15.422 24.420 54.333 1.00 99.99 O ATOM 2712 CB TYR 374 13.321 22.984 52.872 1.00 99.99 C ATOM 2713 CG TYR 374 14.253 21.924 52.279 1.00 99.99 C ATOM 2714 CD1 TYR 374 13.843 20.598 52.220 1.00 99.99 C ATOM 2715 CD2 TYR 374 15.478 22.297 51.741 1.00 99.99 C ATOM 2716 CE1 TYR 374 14.656 19.646 51.620 1.00 99.99 C ATOM 2717 CE2 TYR 374 16.291 21.349 51.134 1.00 99.99 C ATOM 2718 CZ TYR 374 15.878 20.022 51.078 1.00 99.99 C ATOM 2719 OH TYR 374 16.674 19.080 50.512 1.00 99.99 H ATOM 2720 N PRO 375 15.337 22.837 55.938 1.00 99.99 N ATOM 2721 CA PRO 375 16.748 22.956 56.357 1.00 99.99 C ATOM 2722 C PRO 375 17.646 22.248 55.335 1.00 99.99 C ATOM 2723 O PRO 375 17.298 21.188 54.816 1.00 99.99 O ATOM 2724 CB PRO 375 16.839 22.217 57.693 1.00 99.99 C ATOM 2725 CG PRO 375 15.412 22.254 58.235 1.00 99.99 C ATOM 2726 CD PRO 375 14.548 22.149 56.979 1.00 99.99 C ATOM 2727 N ILE 376 18.831 22.807 55.126 1.00 99.99 N ATOM 2728 CA ILE 376 19.852 22.180 54.259 1.00 99.99 C ATOM 2729 C ILE 376 21.022 21.750 55.160 1.00 99.99 C ATOM 2730 O ILE 376 21.904 22.543 55.483 1.00 99.99 O ATOM 2731 CB ILE 376 20.268 23.125 53.110 1.00 99.99 C ATOM 2732 CG1 ILE 376 19.033 23.531 52.286 1.00 99.99 C ATOM 2733 CG2 ILE 376 21.309 22.440 52.205 1.00 99.99 C ATOM 2734 CD1 ILE 376 19.244 24.705 51.322 1.00 99.99 C ATOM 2735 N PHE 377 20.922 20.513 55.648 1.00 99.99 N ATOM 2736 CA PHE 377 21.849 19.911 56.638 1.00 99.99 C ATOM 2737 C PHE 377 21.812 20.691 57.974 1.00 99.99 C ATOM 2738 O PHE 377 20.897 20.474 58.767 1.00 99.99 O ATOM 2739 CB PHE 377 23.243 19.725 55.996 1.00 99.99 C ATOM 2740 CG PHE 377 24.382 19.390 56.966 1.00 99.99 C ATOM 2741 CD1 PHE 377 24.307 18.292 57.817 1.00 99.99 C ATOM 2742 CD2 PHE 377 25.416 20.308 57.111 1.00 99.99 C ATOM 2743 CE1 PHE 377 25.249 18.130 58.824 1.00 99.99 C ATOM 2744 CE2 PHE 377 26.352 20.151 58.125 1.00 99.99 C ATOM 2745 CZ PHE 377 26.267 19.062 58.983 1.00 99.99 C ATOM 2746 N GLN 378 22.761 21.600 58.192 1.00 99.99 N ATOM 2747 CA GLN 378 22.751 22.544 59.333 1.00 99.99 C ATOM 2748 C GLN 378 22.689 24.028 58.911 1.00 99.99 C ATOM 2749 O GLN 378 22.948 24.933 59.704 1.00 99.99 O ATOM 2750 CB GLN 378 23.967 22.279 60.231 1.00 99.99 C ATOM 2751 CG GLN 378 23.826 20.964 61.006 1.00 99.99 C ATOM 2752 CD GLN 378 25.035 20.675 61.903 1.00 99.99 C ATOM 2753 OE1 GLN 378 26.195 20.855 61.559 1.00 99.99 O ATOM 2754 NE2 GLN 378 24.770 20.133 63.070 1.00 99.99 N ATOM 2755 N TRP 379 22.212 24.253 57.690 1.00 99.99 N ATOM 2756 CA TRP 379 22.024 25.591 57.098 1.00 99.99 C ATOM 2757 C TRP 379 20.524 25.910 56.986 1.00 99.99 C ATOM 2758 O TRP 379 19.696 25.031 56.739 1.00 99.99 O ATOM 2759 CB TRP 379 22.690 25.614 55.717 1.00 99.99 C ATOM 2760 CG TRP 379 22.669 26.999 55.062 1.00 99.99 C ATOM 2761 CD1 TRP 379 23.621 27.925 55.153 1.00 99.99 C ATOM 2762 CD2 TRP 379 21.667 27.514 54.253 1.00 99.99 C ATOM 2763 NE1 TRP 379 23.268 28.996 54.442 1.00 99.99 N ATOM 2764 CE2 TRP 379 22.079 28.785 53.884 1.00 99.99 C ATOM 2765 CE3 TRP 379 20.424 27.036 53.861 1.00 99.99 C ATOM 2766 CZ2 TRP 379 21.243 29.585 53.113 1.00 99.99 C ATOM 2767 CZ3 TRP 379 19.583 27.840 53.102 1.00 99.99 C ATOM 2768 CH2 TRP 379 19.994 29.113 52.725 1.00 99.99 H ATOM 2769 N SER 380 20.250 27.201 57.158 1.00 99.99 N ATOM 2770 CA SER 380 18.928 27.867 57.150 1.00 99.99 C ATOM 2771 C SER 380 17.733 27.106 56.558 1.00 99.99 C ATOM 2772 O SER 380 17.746 26.629 55.425 1.00 99.99 O ATOM 2773 CB SER 380 19.043 29.225 56.449 1.00 99.99 C ATOM 2774 OG SER 380 20.023 30.027 57.115 1.00 99.99 O ATOM 2775 N GLU 381 16.651 27.154 57.327 1.00 99.99 N ATOM 2776 CA GLU 381 15.346 26.546 56.971 1.00 99.99 C ATOM 2777 C GLU 381 14.639 27.217 55.774 1.00 99.99 C ATOM 2778 O GLU 381 14.872 28.433 55.583 1.00 99.99 O ATOM 2779 CB GLU 381 14.410 26.554 58.187 1.00 99.99 C ATOM 2780 CG GLU 381 14.961 25.725 59.354 1.00 99.99 C ATOM 2781 CD GLU 381 13.974 25.659 60.519 1.00 99.99 C ATOM 2782 OE1 GLU 381 14.028 26.586 61.357 1.00 99.99 O ATOM 2783 OE2 GLU 381 13.183 24.692 60.537 1.00 99.99 O ATOM 2784 OXT GLU 381 13.748 26.555 55.195 1.00 99.99 O TER 2785 GLU 381 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 96.97 38.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 114.31 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 99.48 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 83.32 60.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.86 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 96.71 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 73.98 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 100.78 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 10.97 100.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.91 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 58.64 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 59.38 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 68.07 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 3.54 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 47.21 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 38.61 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 56.80 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 47.21 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.07 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.07 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.07 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.28 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.28 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3315 CRMSCA SECONDARY STRUCTURE . . 6.49 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.74 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.41 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.34 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.61 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.84 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.95 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.71 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.89 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.83 41 100.0 41 CRMSSC SURFACE . . . . . . . . 14.12 120 100.0 120 CRMSSC BURIED . . . . . . . . 7.15 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.12 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.25 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.64 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.09 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.762 0.834 0.849 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 94.186 0.892 0.898 11 100.0 11 ERRCA SURFACE . . . . . . . . 90.199 0.825 0.841 26 100.0 26 ERRCA BURIED . . . . . . . . 93.687 0.884 0.892 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.737 0.834 0.849 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 94.122 0.891 0.898 54 100.0 54 ERRMC SURFACE . . . . . . . . 90.111 0.823 0.840 129 100.0 129 ERRMC BURIED . . . . . . . . 94.244 0.894 0.901 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 87.746 0.787 0.811 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 87.466 0.782 0.807 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 91.139 0.840 0.854 41 100.0 41 ERRSC SURFACE . . . . . . . . 87.280 0.780 0.805 120 100.0 120 ERRSC BURIED . . . . . . . . 93.340 0.876 0.885 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 89.271 0.811 0.830 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 92.772 0.868 0.878 85 100.0 85 ERRALL SURFACE . . . . . . . . 88.646 0.801 0.822 224 100.0 224 ERRALL BURIED . . . . . . . . 93.941 0.888 0.896 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 7 18 31 31 DISTCA CA (P) 0.00 3.23 9.68 22.58 58.06 31 DISTCA CA (RMS) 0.00 1.87 2.52 3.69 6.39 DISTCA ALL (N) 1 5 17 44 133 254 254 DISTALL ALL (P) 0.39 1.97 6.69 17.32 52.36 254 DISTALL ALL (RMS) 0.85 1.55 2.41 3.65 6.72 DISTALL END of the results output