####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS275_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS275_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 357 - 373 4.75 11.15 LONGEST_CONTINUOUS_SEGMENT: 17 358 - 374 4.73 10.88 LCS_AVERAGE: 48.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 361 - 365 1.96 10.19 LONGEST_CONTINUOUS_SEGMENT: 5 364 - 368 1.35 21.57 LONGEST_CONTINUOUS_SEGMENT: 5 366 - 370 1.81 19.29 LONGEST_CONTINUOUS_SEGMENT: 5 367 - 371 1.70 14.98 LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 1.27 13.63 LONGEST_CONTINUOUS_SEGMENT: 5 371 - 375 1.49 21.55 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 1.85 23.00 LONGEST_CONTINUOUS_SEGMENT: 5 377 - 381 1.37 23.15 LCS_AVERAGE: 15.09 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 368 - 371 0.46 14.93 LONGEST_CONTINUOUS_SEGMENT: 4 372 - 375 0.56 22.94 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.65 15.54 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 0.48 22.10 LCS_AVERAGE: 11.13 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 12 3 3 3 4 4 4 4 6 7 9 11 14 14 16 18 20 20 21 22 23 LCS_GDT A 352 A 352 3 4 12 3 3 3 4 4 4 4 5 7 9 9 10 14 15 17 20 20 21 22 23 LCS_GDT E 353 E 353 3 4 14 3 3 3 4 4 4 6 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT E 354 E 354 3 4 14 3 3 3 4 4 5 6 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT L 355 L 355 3 4 14 3 3 3 3 4 5 6 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT G 356 G 356 3 4 14 3 3 3 4 4 4 6 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT N 357 N 357 3 4 17 3 3 3 4 4 5 6 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT I 358 I 358 3 4 17 3 3 3 4 4 5 6 8 10 11 14 15 16 17 18 20 20 21 24 27 LCS_GDT I 359 I 359 3 4 17 3 3 3 4 4 5 6 8 10 11 13 15 16 17 18 20 20 21 24 27 LCS_GDT V 360 V 360 3 4 17 3 3 3 4 4 4 6 8 10 11 14 15 16 17 18 20 20 21 24 27 LCS_GDT A 361 A 361 3 5 17 3 3 3 4 5 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT W 362 W 362 3 5 17 3 3 4 4 5 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT N 363 N 363 3 5 17 3 3 4 4 5 6 8 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT P 364 P 364 3 5 17 3 3 4 5 5 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT N 365 N 365 3 5 17 3 3 4 5 5 6 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT L 366 L 366 3 5 17 3 3 4 5 6 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT W 367 W 367 3 5 17 2 3 3 5 6 7 8 9 10 11 13 13 15 17 17 19 19 21 23 27 LCS_GDT K 368 K 368 4 5 17 3 4 4 5 6 7 8 9 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT K 369 K 369 4 5 17 3 4 4 5 5 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT G 370 G 370 4 5 17 3 4 4 5 6 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT T 371 T 371 4 5 17 3 4 4 5 6 7 9 10 11 12 14 15 16 17 18 20 20 21 23 27 LCS_GDT N 372 N 372 4 5 17 3 4 4 5 6 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 LCS_GDT G 373 G 373 4 5 17 3 4 4 4 5 6 6 7 10 12 14 15 16 17 17 20 20 21 23 27 LCS_GDT Y 374 Y 374 4 5 17 3 4 4 4 5 6 6 7 8 9 10 13 16 17 18 20 20 21 24 27 LCS_GDT P 375 P 375 4 5 12 3 4 4 4 5 6 6 7 8 9 10 11 11 14 15 18 20 21 24 27 LCS_GDT I 376 I 376 4 5 12 3 4 4 4 4 6 6 7 9 9 13 14 16 17 18 20 20 21 24 27 LCS_GDT F 377 F 377 4 5 12 3 4 4 4 5 6 7 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT Q 378 Q 378 4 5 12 3 4 4 4 5 6 7 8 9 11 13 14 16 17 18 20 20 21 24 27 LCS_GDT W 379 W 379 4 5 12 3 4 4 4 5 6 7 7 7 8 11 14 14 17 18 20 20 21 22 23 LCS_GDT S 380 S 380 4 5 12 3 4 4 4 5 6 7 7 8 9 10 13 16 17 18 20 20 21 24 27 LCS_GDT E 381 E 381 4 5 12 3 4 4 4 5 6 7 7 8 9 10 11 12 13 15 17 17 18 18 18 LCS_AVERAGE LCS_A: 25.04 ( 11.13 15.09 48.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 4 5 6 7 9 10 11 12 14 15 16 17 18 20 20 21 24 27 GDT PERCENT_AT 9.68 12.90 12.90 16.13 19.35 22.58 29.03 32.26 35.48 38.71 45.16 48.39 51.61 54.84 58.06 64.52 64.52 67.74 77.42 87.10 GDT RMS_LOCAL 0.05 0.46 0.46 1.27 1.73 2.43 2.73 2.90 3.08 3.36 3.87 4.10 4.49 5.05 5.21 5.57 5.57 5.80 6.98 7.39 GDT RMS_ALL_AT 23.44 14.93 14.93 13.63 20.29 12.09 12.32 12.18 12.25 12.09 11.53 11.18 10.75 9.06 9.25 9.73 9.73 9.78 8.42 8.61 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 23.783 0 0.608 0.549 24.040 0.000 0.000 LGA A 352 A 352 23.706 0 0.630 0.612 23.935 0.000 0.000 LGA E 353 E 353 18.117 0 0.610 1.074 20.148 0.000 0.000 LGA E 354 E 354 14.998 0 0.620 1.032 16.067 0.000 0.000 LGA L 355 L 355 15.181 0 0.627 0.698 19.497 0.000 0.000 LGA G 356 G 356 11.525 0 0.047 0.047 12.397 0.000 0.000 LGA N 357 N 357 9.562 0 0.297 1.144 11.490 0.595 1.131 LGA I 358 I 358 8.041 0 0.609 0.955 10.344 3.929 6.369 LGA I 359 I 359 8.851 0 0.581 1.573 13.210 4.405 2.202 LGA V 360 V 360 6.114 0 0.655 0.670 7.571 21.786 18.435 LGA A 361 A 361 2.062 0 0.661 0.634 3.937 55.714 62.667 LGA W 362 W 362 1.499 0 0.261 0.769 9.886 71.190 35.476 LGA N 363 N 363 3.871 0 0.173 0.174 8.983 57.500 34.167 LGA P 364 P 364 2.426 0 0.689 0.578 5.607 62.976 48.027 LGA N 365 N 365 2.737 0 0.505 0.985 7.856 66.905 44.940 LGA L 366 L 366 2.775 0 0.513 0.600 4.439 55.476 48.810 LGA W 367 W 367 6.260 0 0.577 0.449 15.594 22.738 6.701 LGA K 368 K 368 4.796 0 0.203 1.169 8.558 37.381 24.815 LGA K 369 K 369 4.116 0 0.051 1.082 6.758 45.357 31.217 LGA G 370 G 370 3.150 0 0.046 0.046 3.244 53.571 53.571 LGA T 371 T 371 3.023 0 0.664 0.956 4.411 48.571 47.415 LGA N 372 N 372 2.356 0 0.585 1.101 8.558 51.429 36.667 LGA G 373 G 373 6.164 0 0.061 0.061 10.225 17.976 17.976 LGA Y 374 Y 374 10.568 0 0.152 1.111 15.294 1.786 0.595 LGA P 375 P 375 15.174 0 0.658 0.630 17.516 0.000 0.000 LGA I 376 I 376 16.387 0 0.090 1.280 17.357 0.000 0.000 LGA F 377 F 377 15.635 0 0.595 0.945 22.168 0.000 0.000 LGA Q 378 Q 378 14.218 0 0.335 0.564 16.068 0.000 0.000 LGA W 379 W 379 19.174 0 0.205 1.253 24.775 0.000 0.000 LGA S 380 S 380 16.046 0 0.020 0.734 17.115 0.000 0.000 LGA E 381 E 381 20.330 0 0.368 1.461 28.173 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.330 8.210 9.604 21.912 16.812 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.90 31.452 27.004 0.333 LGA_LOCAL RMSD: 2.900 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.176 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.330 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.460024 * X + -0.753098 * Y + 0.470341 * Z + -4.359503 Y_new = -0.835624 * X + -0.546292 * Y + -0.057416 * Z + 15.800291 Z_new = 0.300184 * X + -0.366616 * Y + -0.880615 * Z + 75.242317 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.067558 -0.304885 -2.747098 [DEG: -61.1666 -17.4686 -157.3971 ] ZXZ: 1.449325 2.647954 2.455496 [DEG: 83.0402 151.7166 140.6895 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS275_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS275_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.90 27.004 8.33 REMARK ---------------------------------------------------------- MOLECULE T0537TS275_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1hg8A ATOM 2529 N SER 351 -4.493 0.253 67.093 1.00 15.00 N ATOM 2530 CA SER 351 -4.331 0.317 68.512 1.00 15.00 C ATOM 2531 CB SER 351 -4.584 -1.033 69.202 1.00 15.00 C ATOM 2532 OG SER 351 -3.616 -1.981 68.780 1.00 15.00 O ATOM 2533 C SER 351 -2.913 0.693 68.774 1.00 15.00 C ATOM 2534 O SER 351 -2.617 1.427 69.715 1.00 15.00 O ATOM 2535 N ALA 352 -1.993 0.214 67.918 1.00 15.00 N ATOM 2536 CA ALA 352 -0.614 0.533 68.118 1.00 15.00 C ATOM 2537 CB ALA 352 0.325 -0.088 67.069 1.00 15.00 C ATOM 2538 C ALA 352 -0.507 2.015 68.022 1.00 15.00 C ATOM 2539 O ALA 352 -1.314 2.665 67.360 1.00 15.00 O ATOM 2540 N GLU 353 0.497 2.593 68.706 1.00 15.00 N ATOM 2541 CA GLU 353 0.627 4.018 68.714 1.00 15.00 C ATOM 2542 CB GLU 353 1.852 4.512 69.501 1.00 15.00 C ATOM 2543 CG GLU 353 1.746 4.240 71.002 1.00 15.00 C ATOM 2544 CD GLU 353 3.076 4.606 71.647 1.00 15.00 C ATOM 2545 OE1 GLU 353 4.119 4.058 71.202 1.00 15.00 O ATOM 2546 OE2 GLU 353 3.066 5.438 72.592 1.00 15.00 O ATOM 2547 C GLU 353 0.758 4.464 67.298 1.00 15.00 C ATOM 2548 O GLU 353 1.446 3.840 66.492 1.00 15.00 O ATOM 2549 N GLU 354 0.060 5.565 66.962 1.00 15.00 N ATOM 2550 CA GLU 354 0.058 6.082 65.627 1.00 15.00 C ATOM 2551 CB GLU 354 -1.092 7.072 65.375 1.00 15.00 C ATOM 2552 CG GLU 354 -1.043 8.306 66.281 1.00 15.00 C ATOM 2553 CD GLU 354 -2.349 9.070 66.112 1.00 15.00 C ATOM 2554 OE1 GLU 354 -3.403 8.545 66.559 1.00 15.00 O ATOM 2555 OE2 GLU 354 -2.310 10.190 65.536 1.00 15.00 O ATOM 2556 C GLU 354 1.344 6.797 65.392 1.00 15.00 C ATOM 2557 O GLU 354 1.901 7.421 66.295 1.00 15.00 O ATOM 2558 N LEU 355 1.861 6.694 64.153 1.00 15.00 N ATOM 2559 CA LEU 355 3.070 7.370 63.791 1.00 15.00 C ATOM 2560 CB LEU 355 4.282 6.434 63.643 1.00 15.00 C ATOM 2561 CG LEU 355 4.688 5.747 64.962 1.00 15.00 C ATOM 2562 CD1 LEU 355 5.946 4.884 64.778 1.00 15.00 C ATOM 2563 CD2 LEU 355 4.819 6.765 66.106 1.00 15.00 C ATOM 2564 C LEU 355 2.822 8.023 62.467 1.00 15.00 C ATOM 2565 O LEU 355 1.849 7.709 61.783 1.00 15.00 O ATOM 2566 N GLY 356 3.693 8.974 62.086 1.00 15.00 N ATOM 2567 CA GLY 356 3.549 9.666 60.836 1.00 15.00 C ATOM 2568 C GLY 356 3.681 8.659 59.741 1.00 15.00 C ATOM 2569 O GLY 356 2.989 8.728 58.726 1.00 15.00 O ATOM 2570 N ASN 357 4.592 7.690 59.936 1.00 15.00 N ATOM 2571 CA ASN 357 4.868 6.656 58.984 1.00 15.00 C ATOM 2572 CB ASN 357 3.620 5.867 58.549 1.00 15.00 C ATOM 2573 CG ASN 357 3.219 4.974 59.714 1.00 15.00 C ATOM 2574 OD1 ASN 357 2.176 4.324 59.686 1.00 15.00 O ATOM 2575 ND2 ASN 357 4.072 4.936 60.773 1.00 15.00 N ATOM 2576 C ASN 357 5.510 7.259 57.786 1.00 15.00 C ATOM 2577 O ASN 357 5.608 6.625 56.737 1.00 15.00 O ATOM 2578 N ILE 358 5.996 8.503 57.923 1.00 15.00 N ATOM 2579 CA ILE 358 6.734 9.097 56.855 1.00 15.00 C ATOM 2580 CB ILE 358 6.238 10.471 56.483 1.00 15.00 C ATOM 2581 CG2 ILE 358 6.199 11.359 57.740 1.00 15.00 C ATOM 2582 CG1 ILE 358 7.053 11.047 55.315 1.00 15.00 C ATOM 2583 CD1 ILE 358 6.435 12.313 54.721 1.00 15.00 C ATOM 2584 C ILE 358 8.136 9.188 57.359 1.00 15.00 C ATOM 2585 O ILE 358 8.416 9.876 58.340 1.00 15.00 O ATOM 2586 N ILE 359 9.069 8.450 56.729 1.00 14.50 N ATOM 2587 CA ILE 359 10.397 8.537 57.245 1.00 14.50 C ATOM 2588 CB ILE 359 10.913 7.243 57.816 1.00 14.50 C ATOM 2589 CG2 ILE 359 10.021 6.875 59.014 1.00 14.50 C ATOM 2590 CG1 ILE 359 10.988 6.138 56.753 1.00 14.50 C ATOM 2591 CD1 ILE 359 11.759 4.909 57.236 1.00 14.50 C ATOM 2592 C ILE 359 11.317 8.999 56.167 1.00 14.50 C ATOM 2593 O ILE 359 11.554 8.310 55.176 1.00 14.50 O ATOM 2594 N VAL 360 11.859 10.214 56.352 1.00 15.00 N ATOM 2595 CA VAL 360 12.827 10.761 55.454 1.00 15.00 C ATOM 2596 CB VAL 360 12.449 12.106 54.904 1.00 15.00 C ATOM 2597 CG1 VAL 360 13.624 12.638 54.065 1.00 15.00 C ATOM 2598 CG2 VAL 360 11.135 11.960 54.117 1.00 15.00 C ATOM 2599 C VAL 360 14.029 10.955 56.310 1.00 15.00 C ATOM 2600 O VAL 360 13.910 11.373 57.460 1.00 15.00 O ATOM 2601 N ALA 361 15.230 10.653 55.788 1.00 15.00 N ATOM 2602 CA ALA 361 16.355 10.754 56.664 1.00 15.00 C ATOM 2603 CB ALA 361 16.588 9.489 57.507 1.00 15.00 C ATOM 2604 C ALA 361 17.582 10.970 55.854 1.00 15.00 C ATOM 2605 O ALA 361 17.529 11.223 54.651 1.00 15.00 O ATOM 2606 N TRP 362 18.735 10.870 56.538 1.00 15.00 N ATOM 2607 CA TRP 362 20.017 11.040 55.933 1.00 15.00 C ATOM 2608 CB TRP 362 20.185 10.230 54.639 1.00 15.00 C ATOM 2609 CG TRP 362 20.270 8.744 54.892 1.00 15.00 C ATOM 2610 CD2 TRP 362 19.127 7.887 55.045 1.00 15.00 C ATOM 2611 CD1 TRP 362 21.370 7.948 55.026 1.00 15.00 C ATOM 2612 NE1 TRP 362 20.985 6.649 55.254 1.00 15.00 N ATOM 2613 CE2 TRP 362 19.607 6.597 55.269 1.00 15.00 C ATOM 2614 CE3 TRP 362 17.790 8.154 55.002 1.00 15.00 C ATOM 2615 CZ2 TRP 362 18.750 5.551 55.455 1.00 15.00 C ATOM 2616 CZ3 TRP 362 16.926 7.098 55.191 1.00 15.00 C ATOM 2617 CH2 TRP 362 17.399 5.822 55.414 1.00 15.00 H ATOM 2618 C TRP 362 20.292 12.481 55.667 1.00 15.00 C ATOM 2619 O TRP 362 21.239 12.807 54.955 1.00 15.00 O ATOM 2620 N ASN 363 19.470 13.388 56.224 1.00 15.00 N ATOM 2621 CA ASN 363 19.876 14.760 56.177 1.00 15.00 C ATOM 2622 CB ASN 363 18.723 15.776 56.218 1.00 15.00 C ATOM 2623 CG ASN 363 19.337 17.168 56.150 1.00 15.00 C ATOM 2624 OD1 ASN 363 20.557 17.322 56.179 1.00 15.00 O ATOM 2625 ND2 ASN 363 18.470 18.213 56.075 1.00 15.00 N ATOM 2626 C ASN 363 20.621 14.882 57.460 1.00 15.00 C ATOM 2627 O ASN 363 20.036 14.692 58.526 1.00 15.00 O ATOM 2628 N PRO 364 21.885 15.180 57.431 1.00 15.00 N ATOM 2629 CA PRO 364 22.581 15.124 58.682 1.00 15.00 C ATOM 2630 CD PRO 364 22.735 14.746 56.335 1.00 15.00 C ATOM 2631 CB PRO 364 24.064 15.015 58.345 1.00 15.00 C ATOM 2632 CG PRO 364 24.057 14.304 56.981 1.00 15.00 C ATOM 2633 C PRO 364 22.234 16.221 59.618 1.00 15.00 C ATOM 2634 O PRO 364 21.826 17.291 59.169 1.00 15.00 O ATOM 2635 N ASN 365 22.381 15.956 60.930 1.00 15.00 N ATOM 2636 CA ASN 365 22.093 16.958 61.904 1.00 15.00 C ATOM 2637 CB ASN 365 22.039 16.399 63.338 1.00 15.00 C ATOM 2638 CG ASN 365 21.629 17.517 64.287 1.00 15.00 C ATOM 2639 OD1 ASN 365 22.172 18.619 64.248 1.00 15.00 O ATOM 2640 ND2 ASN 365 20.636 17.226 65.169 1.00 15.00 N ATOM 2641 C ASN 365 23.236 17.903 61.823 1.00 15.00 C ATOM 2642 O ASN 365 24.181 17.840 62.608 1.00 15.00 O ATOM 2643 N LEU 366 23.160 18.810 60.836 1.00 15.00 N ATOM 2644 CA LEU 366 24.191 19.771 60.619 1.00 15.00 C ATOM 2645 CB LEU 366 24.974 19.529 59.310 1.00 15.00 C ATOM 2646 CG LEU 366 26.239 20.397 59.130 1.00 15.00 C ATOM 2647 CD1 LEU 366 27.294 20.086 60.204 1.00 15.00 C ATOM 2648 CD2 LEU 366 26.794 20.286 57.703 1.00 15.00 C ATOM 2649 C LEU 366 23.475 21.077 60.531 1.00 15.00 C ATOM 2650 O LEU 366 22.372 21.230 61.055 1.00 15.00 O ATOM 2651 N TRP 367 24.101 22.064 59.872 1.00 15.00 N ATOM 2652 CA TRP 367 23.520 23.360 59.736 1.00 15.00 C ATOM 2653 CB TRP 367 24.399 24.301 58.894 1.00 15.00 C ATOM 2654 CG TRP 367 25.794 24.501 59.443 1.00 15.00 C ATOM 2655 CD2 TRP 367 26.168 25.478 60.428 1.00 15.00 C ATOM 2656 CD1 TRP 367 26.932 23.816 59.130 1.00 15.00 C ATOM 2657 NE1 TRP 367 27.991 24.305 59.855 1.00 15.00 N ATOM 2658 CE2 TRP 367 27.536 25.327 60.659 1.00 15.00 C ATOM 2659 CE3 TRP 367 25.434 26.422 61.087 1.00 15.00 C ATOM 2660 CZ2 TRP 367 28.192 26.122 61.556 1.00 15.00 C ATOM 2661 CZ3 TRP 367 26.100 27.222 61.990 1.00 15.00 C ATOM 2662 CH2 TRP 367 27.452 27.074 62.220 1.00 15.00 H ATOM 2663 C TRP 367 22.237 23.170 58.993 1.00 15.00 C ATOM 2664 O TRP 367 21.216 23.758 59.345 1.00 15.00 O ATOM 2665 N LYS 368 22.252 22.314 57.949 1.00 15.00 N ATOM 2666 CA LYS 368 21.079 22.152 57.146 1.00 15.00 C ATOM 2667 CB LYS 368 21.336 21.384 55.840 1.00 15.00 C ATOM 2668 CG LYS 368 20.095 21.251 54.956 1.00 15.00 C ATOM 2669 CD LYS 368 19.613 22.586 54.386 1.00 15.00 C ATOM 2670 CE LYS 368 20.694 23.340 53.607 1.00 15.00 C ATOM 2671 NZ LYS 368 20.155 24.620 53.103 1.00 15.00 N ATOM 2672 C LYS 368 20.054 21.392 57.917 1.00 15.00 C ATOM 2673 O LYS 368 20.197 20.198 58.175 1.00 15.00 O ATOM 2674 N LYS 369 18.973 22.093 58.300 1.00 15.00 N ATOM 2675 CA LYS 369 17.893 21.468 58.998 1.00 15.00 C ATOM 2676 CB LYS 369 17.638 22.053 60.400 1.00 15.00 C ATOM 2677 CG LYS 369 16.536 21.333 61.183 1.00 15.00 C ATOM 2678 CD LYS 369 16.909 19.912 61.613 1.00 15.00 C ATOM 2679 CE LYS 369 15.808 19.203 62.405 1.00 15.00 C ATOM 2680 NZ LYS 369 16.261 17.852 62.807 1.00 15.00 N ATOM 2681 C LYS 369 16.684 21.749 58.175 1.00 15.00 C ATOM 2682 O LYS 369 16.587 22.799 57.541 1.00 15.00 O ATOM 2683 N GLY 370 15.732 20.802 58.142 1.00 15.00 N ATOM 2684 CA GLY 370 14.563 21.026 57.351 1.00 15.00 C ATOM 2685 C GLY 370 13.747 22.072 58.034 1.00 15.00 C ATOM 2686 O GLY 370 13.706 22.141 59.261 1.00 15.00 O ATOM 2687 N THR 371 13.075 22.928 57.241 1.00 15.00 N ATOM 2688 CA THR 371 12.242 23.928 57.838 1.00 15.00 C ATOM 2689 CB THR 371 12.786 25.319 57.714 1.00 15.00 C ATOM 2690 OG1 THR 371 14.069 25.393 58.321 1.00 15.00 O ATOM 2691 CG2 THR 371 11.816 26.284 58.416 1.00 15.00 C ATOM 2692 C THR 371 10.923 23.898 57.142 1.00 15.00 C ATOM 2693 O THR 371 10.860 23.825 55.916 1.00 15.00 O ATOM 2694 N ASN 372 9.825 23.937 57.923 1.00 15.00 N ATOM 2695 CA ASN 372 8.519 23.944 57.334 1.00 15.00 C ATOM 2696 CB ASN 372 7.757 22.621 57.520 1.00 15.00 C ATOM 2697 CG ASN 372 8.481 21.535 56.743 1.00 15.00 C ATOM 2698 OD1 ASN 372 9.319 21.815 55.889 1.00 15.00 O ATOM 2699 ND2 ASN 372 8.138 20.253 57.035 1.00 15.00 N ATOM 2700 C ASN 372 7.720 25.004 58.025 1.00 15.00 C ATOM 2701 O ASN 372 7.661 25.056 59.253 1.00 15.00 O ATOM 2702 N GLY 373 7.129 25.909 57.224 1.00 15.00 N ATOM 2703 CA GLY 373 6.300 26.991 57.675 1.00 15.00 C ATOM 2704 C GLY 373 4.956 26.524 58.146 1.00 15.00 C ATOM 2705 O GLY 373 4.360 27.134 59.031 1.00 15.00 O ATOM 2706 N TYR 374 4.400 25.469 57.523 1.00 15.00 N ATOM 2707 CA TYR 374 3.046 25.104 57.843 1.00 15.00 C ATOM 2708 CB TYR 374 2.112 25.445 56.657 1.00 15.00 C ATOM 2709 CG TYR 374 0.672 25.262 57.000 1.00 15.00 C ATOM 2710 CD1 TYR 374 -0.036 26.274 57.607 1.00 15.00 C ATOM 2711 CD2 TYR 374 0.026 24.081 56.713 1.00 15.00 C ATOM 2712 CE1 TYR 374 -1.366 26.111 57.924 1.00 15.00 C ATOM 2713 CE2 TYR 374 -1.303 23.912 57.029 1.00 15.00 C ATOM 2714 CZ TYR 374 -2.002 24.928 57.635 1.00 15.00 C ATOM 2715 OH TYR 374 -3.366 24.757 57.958 1.00 15.00 H ATOM 2716 C TYR 374 3.011 23.625 58.059 1.00 15.00 C ATOM 2717 O TYR 374 3.842 22.905 57.509 1.00 15.00 O ATOM 2718 N PRO 375 2.104 23.130 58.867 1.00 15.00 N ATOM 2719 CA PRO 375 1.206 23.963 59.618 1.00 15.00 C ATOM 2720 CD PRO 375 1.484 21.857 58.551 1.00 15.00 C ATOM 2721 CB PRO 375 0.077 23.052 60.111 1.00 15.00 C ATOM 2722 CG PRO 375 0.519 21.630 59.722 1.00 15.00 C ATOM 2723 C PRO 375 1.901 24.716 60.698 1.00 15.00 C ATOM 2724 O PRO 375 1.385 25.745 61.132 1.00 15.00 O ATOM 2725 N ILE 376 3.056 24.213 61.161 1.00 15.00 N ATOM 2726 CA ILE 376 3.778 24.877 62.201 1.00 15.00 C ATOM 2727 CB ILE 376 3.734 24.132 63.508 1.00 15.00 C ATOM 2728 CG2 ILE 376 4.598 24.873 64.544 1.00 15.00 C ATOM 2729 CG1 ILE 376 2.272 23.983 63.962 1.00 15.00 C ATOM 2730 CD1 ILE 376 1.565 25.322 64.175 1.00 15.00 C ATOM 2731 C ILE 376 5.189 24.945 61.722 1.00 15.00 C ATOM 2732 O ILE 376 5.571 24.224 60.803 1.00 15.00 O ATOM 2733 N PHE 377 5.998 25.849 62.304 1.00 15.00 N ATOM 2734 CA PHE 377 7.354 25.940 61.865 1.00 15.00 C ATOM 2735 CB PHE 377 8.137 27.107 62.501 1.00 15.00 C ATOM 2736 CG PHE 377 8.209 26.961 63.980 1.00 15.00 C ATOM 2737 CD1 PHE 377 7.194 27.444 64.774 1.00 15.00 C ATOM 2738 CD2 PHE 377 9.287 26.347 64.575 1.00 15.00 C ATOM 2739 CE1 PHE 377 7.252 27.319 66.142 1.00 15.00 C ATOM 2740 CE2 PHE 377 9.350 26.222 65.942 1.00 15.00 C ATOM 2741 CZ PHE 377 8.333 26.707 66.729 1.00 15.00 C ATOM 2742 C PHE 377 8.009 24.630 62.159 1.00 15.00 C ATOM 2743 O PHE 377 8.768 24.116 61.340 1.00 15.00 O ATOM 2744 N GLN 378 7.734 24.036 63.334 1.00 15.00 N ATOM 2745 CA GLN 378 8.332 22.756 63.580 1.00 15.00 C ATOM 2746 CB GLN 378 8.416 22.401 65.073 1.00 15.00 C ATOM 2747 CG GLN 378 9.373 23.277 65.878 1.00 15.00 C ATOM 2748 CD GLN 378 9.297 22.827 67.329 1.00 15.00 C ATOM 2749 OE1 GLN 378 9.502 21.655 67.639 1.00 15.00 O ATOM 2750 NE2 GLN 378 8.982 23.782 68.246 1.00 15.00 N ATOM 2751 C GLN 378 7.428 21.734 62.978 1.00 15.00 C ATOM 2752 O GLN 378 7.247 20.650 63.531 1.00 15.00 O ATOM 2753 N TRP 379 6.841 22.042 61.811 1.00 15.00 N ATOM 2754 CA TRP 379 5.975 21.089 61.185 1.00 15.00 C ATOM 2755 CB TRP 379 5.188 21.632 59.987 1.00 15.00 C ATOM 2756 CG TRP 379 4.302 20.582 59.364 1.00 15.00 C ATOM 2757 CD2 TRP 379 4.372 20.185 57.987 1.00 15.00 C ATOM 2758 CD1 TRP 379 3.287 19.862 59.925 1.00 15.00 C ATOM 2759 NE1 TRP 379 2.710 19.049 58.977 1.00 15.00 N ATOM 2760 CE2 TRP 379 3.370 19.239 57.778 1.00 15.00 C ATOM 2761 CE3 TRP 379 5.200 20.583 56.976 1.00 15.00 C ATOM 2762 CZ2 TRP 379 3.177 18.675 56.548 1.00 15.00 C ATOM 2763 CZ3 TRP 379 5.008 20.010 55.739 1.00 15.00 C ATOM 2764 CH2 TRP 379 4.015 19.076 55.530 1.00 15.00 H ATOM 2765 C TRP 379 6.781 19.935 60.704 1.00 15.00 C ATOM 2766 O TRP 379 6.323 18.794 60.744 1.00 15.00 O ATOM 2767 N SER 380 8.016 20.218 60.247 1.00 15.00 N ATOM 2768 CA SER 380 8.848 19.226 59.637 1.00 15.00 C ATOM 2769 CB SER 380 10.280 19.717 59.356 1.00 15.00 C ATOM 2770 OG SER 380 10.934 20.024 60.578 1.00 15.00 O ATOM 2771 C SER 380 8.938 18.027 60.516 1.00 15.00 C ATOM 2772 O SER 380 8.996 18.127 61.741 1.00 15.00 O ATOM 2773 N GLU 381 8.917 16.846 59.872 1.00 15.00 N ATOM 2774 CA GLU 381 8.987 15.597 60.563 1.00 15.00 C ATOM 2775 CB GLU 381 8.550 14.409 59.690 1.00 15.00 C ATOM 2776 CG GLU 381 7.070 14.452 59.301 1.00 15.00 C ATOM 2777 CD GLU 381 6.252 14.233 60.565 1.00 15.00 C ATOM 2778 OE1 GLU 381 6.573 13.273 61.314 1.00 15.00 O ATOM 2779 OE2 GLU 381 5.300 15.026 60.802 1.00 15.00 O ATOM 2780 C GLU 381 10.448 15.380 60.925 1.00 15.00 C ATOM 2781 O GLU 381 10.968 16.152 61.772 1.00 15.00 O ATOM 2782 OXT GLU 381 11.065 14.438 60.358 1.00 15.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.28 38.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 113.23 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 94.97 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 96.84 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.21 38.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 91.99 36.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 85.10 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 91.76 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 77.29 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.79 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 75.99 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 73.41 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.26 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 42.91 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.68 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 73.57 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 61.07 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 67.68 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.68 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.68 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.68 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.33 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.33 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2687 CRMSCA SECONDARY STRUCTURE . . 6.04 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.61 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.70 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.36 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.14 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.59 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.98 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.90 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.15 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 7.66 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.11 120 100.0 120 CRMSSC BURIED . . . . . . . . 7.95 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.68 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 6.84 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.97 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.21 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.233 0.343 0.381 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 9.379 0.474 0.561 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.935 0.324 0.362 26 100.0 26 ERRCA BURIED . . . . . . . . 8.780 0.442 0.481 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.223 0.342 0.379 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 9.263 0.466 0.547 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.992 0.327 0.362 129 100.0 129 ERRMC BURIED . . . . . . . . 8.518 0.426 0.473 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.766 0.253 0.285 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 5.664 0.247 0.278 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 7.505 0.344 0.422 41 100.0 41 ERRSC SURFACE . . . . . . . . 5.662 0.247 0.275 120 100.0 120 ERRSC BURIED . . . . . . . . 7.020 0.318 0.397 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.533 0.300 0.333 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 8.504 0.413 0.492 85 100.0 85 ERRALL SURFACE . . . . . . . . 6.318 0.286 0.317 224 100.0 224 ERRALL BURIED . . . . . . . . 8.145 0.399 0.454 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 10 22 31 31 DISTCA CA (P) 0.00 0.00 6.45 32.26 70.97 31 DISTCA CA (RMS) 0.00 0.00 2.68 4.10 6.72 DISTCA ALL (N) 0 0 9 43 167 254 254 DISTALL ALL (P) 0.00 0.00 3.54 16.93 65.75 254 DISTALL ALL (RMS) 0.00 0.00 2.74 3.81 7.11 DISTALL END of the results output