####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 169), selected 21 , name T0537TS273_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 21 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS273_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 351 - 366 4.64 7.74 LCS_AVERAGE: 47.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 356 - 361 1.38 17.35 LONGEST_CONTINUOUS_SEGMENT: 6 357 - 362 1.82 17.35 LONGEST_CONTINUOUS_SEGMENT: 6 365 - 375 1.77 20.46 LCS_AVERAGE: 16.74 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 357 - 360 0.15 16.86 LONGEST_CONTINUOUS_SEGMENT: 4 358 - 361 0.87 16.98 LONGEST_CONTINUOUS_SEGMENT: 4 365 - 368 0.58 22.68 LCS_AVERAGE: 11.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 16 3 3 3 4 4 4 5 6 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT A 352 A 352 3 4 16 3 3 3 4 4 4 5 5 7 9 14 14 15 16 16 16 17 18 19 19 LCS_GDT E 353 E 353 3 4 16 3 3 3 4 4 4 5 7 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT E 354 E 354 3 4 16 3 3 3 4 4 6 6 8 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT L 355 L 355 3 3 16 3 3 4 4 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT G 356 G 356 3 6 16 3 3 4 6 6 6 7 9 10 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT N 357 N 357 4 6 16 4 4 5 6 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT I 358 I 358 4 6 16 4 4 4 6 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT I 359 I 359 4 6 16 4 4 4 6 6 6 7 8 9 10 11 14 15 16 16 16 17 18 19 19 LCS_GDT V 360 V 360 4 6 16 4 4 4 6 6 6 7 8 9 10 11 14 15 16 16 16 17 18 19 19 LCS_GDT A 361 A 361 4 6 16 3 3 4 6 6 6 7 8 10 10 14 14 15 16 16 16 17 18 19 19 LCS_GDT W 362 W 362 3 6 16 3 4 5 5 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT N 363 N 363 3 4 16 3 4 5 5 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT P 364 P 364 3 4 16 3 4 5 5 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT N 365 N 365 4 6 16 3 4 5 5 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT L 366 L 366 4 6 16 3 4 4 5 5 6 6 9 11 12 14 14 15 16 16 16 17 18 19 19 LCS_GDT W 367 W 367 4 6 15 3 4 4 5 5 6 6 7 7 8 8 10 12 14 15 16 17 18 19 19 LCS_GDT K 368 K 368 4 6 10 3 4 4 5 5 6 6 7 7 8 8 9 10 12 14 15 17 18 19 19 LCS_GDT K 369 K 369 3 6 10 3 3 4 5 5 6 6 7 7 8 8 8 8 11 13 14 15 18 19 19 LCS_GDT P 375 P 375 3 6 10 3 3 3 4 4 6 6 7 7 7 8 8 8 9 9 10 13 13 14 16 LCS_GDT I 376 I 376 3 4 10 3 3 3 3 4 4 4 4 4 5 5 7 7 8 10 11 13 14 15 17 LCS_AVERAGE LCS_A: 25.19 ( 11.06 16.74 47.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 6 6 7 9 11 12 14 14 15 16 16 16 17 18 19 19 GDT PERCENT_AT 12.90 12.90 16.13 19.35 19.35 19.35 22.58 29.03 35.48 38.71 45.16 45.16 48.39 51.61 51.61 51.61 54.84 58.06 61.29 61.29 GDT RMS_LOCAL 0.15 0.15 1.09 1.38 1.38 1.38 2.08 2.90 3.61 3.74 4.08 4.08 4.41 4.64 4.64 4.64 5.05 5.49 5.96 5.96 GDT RMS_ALL_AT 16.86 16.86 9.51 17.35 17.35 17.35 17.18 7.92 7.43 7.47 7.53 7.53 7.63 7.74 7.74 7.74 7.50 7.34 7.26 7.26 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 8.133 0 0.514 0.783 10.860 4.524 3.492 LGA A 352 A 352 7.501 0 0.184 0.202 9.040 6.429 6.571 LGA E 353 E 353 7.271 0 0.583 0.911 10.496 9.286 5.344 LGA E 354 E 354 7.337 0 0.614 1.121 11.044 13.452 6.825 LGA L 355 L 355 3.414 0 0.608 1.336 4.448 46.905 57.976 LGA G 356 G 356 2.710 0 0.619 0.619 5.061 51.310 51.310 LGA N 357 N 357 3.706 0 0.287 0.431 8.918 57.500 33.036 LGA I 358 I 358 2.789 0 0.179 1.319 8.322 57.976 36.190 LGA I 359 I 359 6.842 0 0.327 1.375 11.034 14.881 7.976 LGA V 360 V 360 7.984 0 0.207 1.207 9.944 8.571 6.054 LGA A 361 A 361 5.456 0 0.216 0.230 6.420 32.024 29.048 LGA W 362 W 362 1.596 0 0.598 0.480 4.121 63.214 58.912 LGA N 363 N 363 2.032 0 0.257 1.070 5.786 68.929 50.595 LGA P 364 P 364 1.366 0 0.660 0.579 3.678 70.000 72.449 LGA N 365 N 365 3.378 0 0.646 0.848 9.867 63.333 36.190 LGA L 366 L 366 3.891 0 0.183 1.388 9.269 37.857 23.393 LGA W 367 W 367 8.786 0 0.019 0.185 16.263 6.548 1.905 LGA K 368 K 368 10.913 0 0.061 1.528 13.001 0.000 3.016 LGA K 369 K 369 13.859 0 0.105 0.762 17.698 0.000 0.000 LGA P 375 P 375 17.316 0 0.685 0.634 19.611 0.000 0.000 LGA I 376 I 376 13.607 0 0.129 1.059 14.424 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 169 169 100.00 31 SUMMARY(RMSD_GDC): 7.022 6.972 7.765 19.766 15.816 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 31 4.0 9 2.90 28.226 26.201 0.300 LGA_LOCAL RMSD: 2.898 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.923 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 7.022 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.262216 * X + -0.424762 * Y + -0.866499 * Z + 48.956867 Y_new = -0.035476 * X + 0.893068 * Y + -0.448522 * Z + -4.093396 Z_new = 0.964357 * X + 0.148350 * Y + 0.219107 * Z + 24.727779 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.134478 -1.303002 0.595167 [DEG: -7.7050 -74.6565 34.1005 ] ZXZ: -1.093148 1.349897 1.418160 [DEG: -62.6328 77.3434 81.2546 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS273_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS273_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 31 4.0 9 2.90 26.201 7.02 REMARK ---------------------------------------------------------- MOLECULE T0537TS273_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2032 N SER 351 5.462 18.558 45.331 1.00 1.00 N ATOM 2033 CA SER 351 4.165 18.716 44.696 1.00 1.00 C ATOM 2034 C SER 351 3.093 19.257 45.635 1.00 1.00 C ATOM 2035 O SER 351 1.964 18.755 45.671 1.00 1.00 O ATOM 2036 CB SER 351 3.727 17.390 44.066 1.00 1.00 C ATOM 2037 OG SER 351 4.662 16.988 43.075 1.00 1.00 O ATOM 2038 N ALA 352 3.471 20.274 46.403 1.00 1.00 N ATOM 2039 CA ALA 352 2.539 20.930 47.302 1.00 1.00 C ATOM 2040 C ALA 352 2.375 20.424 48.718 1.00 1.00 C ATOM 2041 O ALA 352 1.725 21.092 49.525 1.00 1.00 O ATOM 2042 CB ALA 352 1.164 20.914 46.641 1.00 1.00 C ATOM 2043 N GLU 353 2.943 19.265 49.034 1.00 1.00 N ATOM 2044 CA GLU 353 2.820 18.710 50.378 1.00 1.00 C ATOM 2045 C GLU 353 4.170 18.458 51.042 1.00 1.00 C ATOM 2046 O GLU 353 5.142 18.090 50.381 1.00 1.00 O ATOM 2047 CB GLU 353 2.013 17.409 50.334 1.00 1.00 C ATOM 2048 CG GLU 353 0.561 17.607 49.894 1.00 1.00 C ATOM 2049 CD GLU 353 -0.135 16.254 49.945 1.00 1.00 C ATOM 2050 OE1 GLU 353 0.551 15.249 50.270 1.00 1.00 O ATOM 2051 OE2 GLU 353 -1.361 16.208 49.659 1.00 1.00 O ATOM 2052 N GLU 354 4.219 18.656 52.355 1.00 1.00 N ATOM 2053 CA GLU 354 5.444 18.451 53.115 1.00 1.00 C ATOM 2054 C GLU 354 6.022 17.078 52.810 1.00 1.00 C ATOM 2055 O GLU 354 5.289 16.098 52.672 1.00 1.00 O ATOM 2056 CB GLU 354 5.161 18.574 54.607 1.00 1.00 C ATOM 2057 CG GLU 354 6.403 18.388 55.481 1.00 1.00 C ATOM 2058 CD GLU 354 5.987 18.572 56.934 1.00 1.00 C ATOM 2059 OE1 GLU 354 4.779 18.842 57.174 1.00 1.00 O ATOM 2060 OE2 GLU 354 6.872 18.447 57.822 1.00 1.00 O ATOM 2061 N LEU 355 7.343 17.010 52.712 1.00 1.00 N ATOM 2062 CA LEU 355 8.004 15.749 52.423 1.00 1.00 C ATOM 2063 C LEU 355 8.986 15.348 53.502 1.00 1.00 C ATOM 2064 O LEU 355 9.693 16.185 54.056 1.00 1.00 O ATOM 2065 CB LEU 355 8.747 15.814 51.087 1.00 1.00 C ATOM 2066 CG LEU 355 9.489 14.523 50.737 1.00 1.00 C ATOM 2067 CD1 LEU 355 8.591 13.326 50.424 1.00 1.00 C ATOM 2068 CD2 LEU 355 10.400 14.613 49.514 1.00 1.00 C ATOM 2069 N GLY 356 9.016 14.055 53.798 1.00 1.00 N ATOM 2070 CA GLY 356 9.919 13.515 54.802 1.00 1.00 C ATOM 2071 C GLY 356 11.001 12.759 54.045 1.00 1.00 C ATOM 2072 O GLY 356 10.705 11.806 53.325 1.00 1.00 O ATOM 2073 N ASN 357 12.249 13.186 54.202 1.00 1.00 N ATOM 2074 CA ASN 357 13.360 12.537 53.519 1.00 1.00 C ATOM 2075 C ASN 357 14.323 11.924 54.529 1.00 1.00 C ATOM 2076 O ASN 357 15.427 11.511 54.176 1.00 1.00 O ATOM 2077 CB ASN 357 14.101 13.554 52.646 1.00 1.00 C ATOM 2078 CG ASN 357 13.147 14.024 51.558 1.00 1.00 C ATOM 2079 OD1 ASN 357 12.783 13.264 50.662 1.00 1.00 O ATOM 2080 ND2 ASN 357 12.688 15.304 51.576 1.00 1.00 N ATOM 2081 N ILE 358 13.890 11.858 55.786 1.00 1.00 N ATOM 2082 CA ILE 358 14.715 11.313 56.861 1.00 1.00 C ATOM 2083 C ILE 358 14.959 9.814 56.729 1.00 1.00 C ATOM 2084 O ILE 358 15.831 9.264 57.400 1.00 1.00 O ATOM 2085 CB ILE 358 14.063 11.596 58.217 1.00 1.00 C ATOM 2086 CG1 ILE 358 12.690 10.925 58.388 1.00 1.00 C ATOM 2087 CG2 ILE 358 13.816 13.091 58.479 1.00 1.00 C ATOM 2088 CD1 ILE 358 12.126 11.046 59.803 1.00 1.00 C ATOM 2089 N ILE 359 14.189 9.156 55.870 1.00 1.00 N ATOM 2090 CA ILE 359 14.354 7.725 55.685 1.00 1.00 C ATOM 2091 C ILE 359 15.013 7.367 54.369 1.00 1.00 C ATOM 2092 O ILE 359 14.984 6.208 53.948 1.00 1.00 O ATOM 2093 CB ILE 359 12.987 7.013 55.789 1.00 1.00 C ATOM 2094 CG1 ILE 359 11.979 7.461 54.717 1.00 1.00 C ATOM 2095 CG2 ILE 359 12.276 7.244 57.132 1.00 1.00 C ATOM 2096 CD1 ILE 359 10.722 6.595 54.663 1.00 1.00 C ATOM 2097 N VAL 360 15.616 8.355 53.716 1.00 1.00 N ATOM 2098 CA VAL 360 16.266 8.127 52.435 1.00 1.00 C ATOM 2099 C VAL 360 17.682 7.565 52.566 1.00 1.00 C ATOM 2100 O VAL 360 18.361 7.338 51.563 1.00 1.00 O ATOM 2101 CB VAL 360 16.278 9.420 51.617 1.00 1.00 C ATOM 2102 CG1 VAL 360 14.880 9.966 51.319 1.00 1.00 C ATOM 2103 CG2 VAL 360 17.020 10.569 52.302 1.00 1.00 C ATOM 2104 N ALA 361 18.128 7.359 53.803 1.00 1.00 N ATOM 2105 CA ALA 361 19.441 6.777 54.037 1.00 1.00 C ATOM 2106 C ALA 361 20.642 7.670 54.285 1.00 1.00 C ATOM 2107 O ALA 361 21.778 7.235 54.077 1.00 1.00 O ATOM 2108 CB ALA 361 19.769 5.882 52.846 1.00 1.00 C ATOM 2109 N TRP 362 20.423 8.900 54.736 1.00 1.00 N ATOM 2110 CA TRP 362 21.542 9.801 54.988 1.00 1.00 C ATOM 2111 C TRP 362 21.733 10.165 56.455 1.00 1.00 C ATOM 2112 O TRP 362 20.815 10.039 57.266 1.00 1.00 O ATOM 2113 CB TRP 362 21.382 11.090 54.176 1.00 1.00 C ATOM 2114 CG TRP 362 21.518 10.898 52.684 1.00 1.00 C ATOM 2115 CD1 TRP 362 21.691 9.745 51.971 1.00 1.00 C ATOM 2116 CD2 TRP 362 21.496 11.919 51.676 1.00 1.00 C ATOM 2117 NE1 TRP 362 21.775 9.929 50.668 1.00 1.00 N ATOM 2118 CE2 TRP 362 21.658 11.273 50.422 1.00 1.00 C ATOM 2119 CE3 TRP 362 21.351 13.322 51.706 1.00 1.00 C ATOM 2120 CZ2 TRP 362 21.683 11.988 49.194 1.00 1.00 C ATOM 2121 CZ3 TRP 362 21.374 14.046 50.477 1.00 1.00 C ATOM 2122 CH2 TRP 362 21.539 13.368 49.243 1.00 1.00 H ATOM 2123 N ASN 363 22.941 10.612 56.784 1.00 1.00 N ATOM 2124 CA ASN 363 23.269 11.030 58.139 1.00 1.00 C ATOM 2125 C ASN 363 23.003 12.529 58.207 1.00 1.00 C ATOM 2126 O ASN 363 23.138 13.235 57.207 1.00 1.00 O ATOM 2127 CB ASN 363 24.737 10.736 58.451 1.00 1.00 C ATOM 2128 CG ASN 363 24.909 9.225 58.526 1.00 1.00 C ATOM 2129 OD1 ASN 363 23.959 8.493 58.801 1.00 1.00 O ATOM 2130 ND2 ASN 363 26.130 8.678 58.286 1.00 1.00 N ATOM 2131 N PRO 364 22.632 13.013 59.386 1.00 1.00 N ATOM 2132 CA PRO 364 22.310 14.423 59.564 1.00 1.00 C ATOM 2133 C PRO 364 23.455 15.408 59.358 1.00 1.00 C ATOM 2134 O PRO 364 24.621 15.109 59.621 1.00 1.00 O ATOM 2135 CB PRO 364 21.698 14.637 60.946 1.00 1.00 C ATOM 2136 CG PRO 364 21.056 13.377 61.530 1.00 1.00 C ATOM 2137 CD PRO 364 21.803 12.089 61.176 1.00 1.00 C ATOM 2138 N ASN 365 23.092 16.592 58.875 1.00 1.00 N ATOM 2139 CA ASN 365 24.033 17.682 58.653 1.00 1.00 C ATOM 2140 C ASN 365 24.168 18.300 60.043 1.00 1.00 C ATOM 2141 O ASN 365 23.202 18.842 60.584 1.00 1.00 O ATOM 2142 CB ASN 365 23.426 18.680 57.658 1.00 1.00 C ATOM 2143 CG ASN 365 24.481 19.732 57.346 1.00 1.00 C ATOM 2144 OD1 ASN 365 25.388 19.975 58.140 1.00 1.00 O ATOM 2145 ND2 ASN 365 24.419 20.414 56.170 1.00 1.00 N ATOM 2146 N LEU 366 25.360 18.210 60.624 1.00 1.00 N ATOM 2147 CA LEU 366 25.580 18.718 61.974 1.00 1.00 C ATOM 2148 C LEU 366 26.390 20.004 62.091 1.00 1.00 C ATOM 2149 O LEU 366 26.370 20.656 63.136 1.00 1.00 O ATOM 2150 CB LEU 366 26.261 17.643 62.844 1.00 1.00 C ATOM 2151 CG LEU 366 25.447 16.354 62.969 1.00 1.00 C ATOM 2152 CD1 LEU 366 26.128 15.234 63.757 1.00 1.00 C ATOM 2153 CD2 LEU 366 24.097 16.507 63.666 1.00 1.00 C ATOM 2154 N TRP 367 27.105 20.365 61.031 1.00 1.00 N ATOM 2155 CA TRP 367 27.910 21.580 61.048 1.00 1.00 C ATOM 2156 C TRP 367 27.016 22.794 61.268 1.00 1.00 C ATOM 2157 O TRP 367 25.869 22.825 60.824 1.00 1.00 O ATOM 2158 CB TRP 367 28.677 21.728 59.732 1.00 1.00 C ATOM 2159 CG TRP 367 29.703 20.646 59.494 1.00 1.00 C ATOM 2160 CD1 TRP 367 29.705 19.640 58.571 1.00 1.00 C ATOM 2161 CD2 TRP 367 30.928 20.444 60.215 1.00 1.00 C ATOM 2162 NE1 TRP 367 30.764 18.857 58.632 1.00 1.00 N ATOM 2163 CE2 TRP 367 31.568 19.312 59.644 1.00 1.00 C ATOM 2164 CE3 TRP 367 31.553 21.111 61.290 1.00 1.00 C ATOM 2165 CZ2 TRP 367 32.816 18.824 60.118 1.00 1.00 C ATOM 2166 CZ3 TRP 367 32.806 20.627 61.770 1.00 1.00 C ATOM 2167 CH2 TRP 367 33.417 19.493 61.177 1.00 1.00 H ATOM 2168 N LYS 368 27.543 23.794 61.963 1.00 1.00 N ATOM 2169 CA LYS 368 26.772 24.996 62.234 1.00 1.00 C ATOM 2170 C LYS 368 26.812 25.979 61.075 1.00 1.00 C ATOM 2171 O LYS 368 27.812 26.082 60.360 1.00 1.00 O ATOM 2172 CB LYS 368 27.290 25.687 63.499 1.00 1.00 C ATOM 2173 CG LYS 368 27.138 24.883 64.792 1.00 1.00 C ATOM 2174 CD LYS 368 25.678 24.731 65.222 1.00 1.00 C ATOM 2175 CE LYS 368 24.932 23.691 64.395 1.00 1.00 C ATOM 2176 NZ LYS 368 23.487 23.626 64.759 1.00 1.00 N ATOM 2177 N LYS 369 25.700 26.675 60.873 1.00 1.00 N ATOM 2178 CA LYS 369 25.614 27.701 59.844 1.00 1.00 C ATOM 2179 C LYS 369 25.947 28.951 60.657 1.00 1.00 C ATOM 2180 O LYS 369 25.209 29.320 61.569 1.00 1.00 O ATOM 2181 CB LYS 369 24.195 27.791 59.254 1.00 1.00 C ATOM 2182 CG LYS 369 23.727 26.496 58.589 1.00 1.00 C ATOM 2183 CD LYS 369 24.585 26.077 57.393 1.00 1.00 C ATOM 2184 CE LYS 369 24.033 24.866 56.638 1.00 1.00 C ATOM 2185 NZ LYS 369 24.951 24.495 55.537 1.00 1.00 N ATOM 2186 N PRO 375 27.073 29.613 60.339 1.00 1.00 N ATOM 2187 CA PRO 375 27.546 30.815 61.033 1.00 1.00 C ATOM 2188 C PRO 375 26.764 32.111 60.881 1.00 1.00 C ATOM 2189 O PRO 375 26.867 32.998 61.734 1.00 1.00 O ATOM 2190 CB PRO 375 28.975 30.952 60.526 1.00 1.00 C ATOM 2191 CG PRO 375 28.843 30.516 59.101 1.00 1.00 C ATOM 2192 CD PRO 375 27.971 29.274 59.219 1.00 1.00 C ATOM 2193 N ILE 376 25.992 32.227 59.807 1.00 1.00 N ATOM 2194 CA ILE 376 25.222 33.439 59.573 1.00 1.00 C ATOM 2195 C ILE 376 23.753 33.291 59.927 1.00 1.00 C ATOM 2196 O ILE 376 23.199 32.191 59.911 1.00 1.00 O ATOM 2197 CB ILE 376 25.328 33.869 58.108 1.00 1.00 C ATOM 2198 CG1 ILE 376 26.764 34.206 57.670 1.00 1.00 C ATOM 2199 CG2 ILE 376 24.502 35.123 57.775 1.00 1.00 C ATOM 2200 CD1 ILE 376 26.926 34.329 56.156 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 169 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 92.71 26.3 38 63.3 60 ARMSMC SECONDARY STRUCTURE . . 100.58 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.73 29.0 31 62.0 50 ARMSMC BURIED . . . . . . . . 96.96 14.3 7 70.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.85 27.8 18 69.2 26 ARMSSC1 RELIABLE SIDE CHAINS . 97.83 29.4 17 68.0 25 ARMSSC1 SECONDARY STRUCTURE . . 103.66 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 97.33 33.3 15 65.2 23 ARMSSC1 BURIED . . . . . . . . 111.60 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.73 62.5 16 72.7 22 ARMSSC2 RELIABLE SIDE CHAINS . 56.43 72.7 11 68.8 16 ARMSSC2 SECONDARY STRUCTURE . . 49.60 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 64.58 64.3 14 70.0 20 ARMSSC2 BURIED . . . . . . . . 57.41 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.21 75.0 4 66.7 6 ARMSSC3 RELIABLE SIDE CHAINS . 51.21 75.0 4 80.0 5 ARMSSC3 SECONDARY STRUCTURE . . 6.86 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 51.21 75.0 4 66.7 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 2.01 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 2.01 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 2.01 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.02 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.02 21 67.7 31 CRMSCA CRN = ALL/NP . . . . . 0.3344 CRMSCA SECONDARY STRUCTURE . . 6.29 11 100.0 11 CRMSCA SURFACE . . . . . . . . 6.11 17 65.4 26 CRMSCA BURIED . . . . . . . . 10.02 4 80.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.17 104 68.4 152 CRMSMC SECONDARY STRUCTURE . . 6.43 54 100.0 54 CRMSMC SURFACE . . . . . . . . 6.26 85 65.9 129 CRMSMC BURIED . . . . . . . . 10.31 19 82.6 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.59 85 65.4 130 CRMSSC RELIABLE SIDE CHAINS . 8.68 73 64.0 114 CRMSSC SECONDARY STRUCTURE . . 7.51 41 100.0 41 CRMSSC SURFACE . . . . . . . . 7.83 75 62.5 120 CRMSSC BURIED . . . . . . . . 12.95 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.83 169 66.5 254 CRMSALL SECONDARY STRUCTURE . . 6.87 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.07 143 63.8 224 CRMSALL BURIED . . . . . . . . 11.13 26 86.7 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.261 0.653 0.327 21 67.7 31 ERRCA SECONDARY STRUCTURE . . 4.909 0.675 0.337 11 100.0 11 ERRCA SURFACE . . . . . . . . 4.460 0.619 0.309 17 65.4 26 ERRCA BURIED . . . . . . . . 8.664 0.801 0.400 4 80.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.422 0.668 0.337 104 68.4 152 ERRMC SECONDARY STRUCTURE . . 5.009 0.678 0.339 54 100.0 54 ERRMC SURFACE . . . . . . . . 4.645 0.638 0.323 85 65.9 129 ERRMC BURIED . . . . . . . . 8.894 0.803 0.401 19 82.6 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.752 0.707 0.354 85 65.4 130 ERRSC RELIABLE SIDE CHAINS . 6.767 0.701 0.350 73 64.0 114 ERRSC SECONDARY STRUCTURE . . 5.744 0.676 0.338 41 100.0 41 ERRSC SURFACE . . . . . . . . 6.086 0.688 0.344 75 62.5 120 ERRSC BURIED . . . . . . . . 11.753 0.850 0.425 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.001 0.684 0.344 169 66.5 254 ERRALL SECONDARY STRUCTURE . . 5.273 0.675 0.337 85 100.0 85 ERRALL SURFACE . . . . . . . . 5.328 0.661 0.333 143 63.8 224 ERRALL BURIED . . . . . . . . 9.704 0.816 0.408 26 86.7 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 3 9 18 21 31 DISTCA CA (P) 0.00 6.45 9.68 29.03 58.06 31 DISTCA CA (RMS) 0.00 1.55 1.76 3.58 5.85 DISTCA ALL (N) 1 12 23 60 136 169 254 DISTALL ALL (P) 0.39 4.72 9.06 23.62 53.54 254 DISTALL ALL (RMS) 0.46 1.62 2.07 3.47 6.27 DISTALL END of the results output