####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 212), selected 31 , name T0537TS257_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS257_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.74 14.32 LCS_AVERAGE: 51.51 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 371 - 379 1.85 21.48 LCS_AVERAGE: 21.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 0.94 21.94 LCS_AVERAGE: 16.96 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 7 17 5 5 6 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT A 352 A 352 6 7 17 5 5 6 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT E 353 E 353 6 7 17 5 5 6 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT E 354 E 354 6 7 17 5 5 6 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT L 355 L 355 6 7 17 5 5 6 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT G 356 G 356 6 7 17 0 3 6 7 7 7 7 10 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT N 357 N 357 3 7 17 2 4 6 7 7 7 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT I 358 I 358 3 5 17 0 3 4 7 7 7 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT I 359 I 359 3 5 17 0 3 4 4 5 6 8 8 11 12 13 15 15 16 16 17 17 20 20 22 LCS_GDT V 360 V 360 3 5 17 2 3 4 4 5 6 6 8 10 11 11 12 14 15 16 18 19 20 20 22 LCS_GDT A 361 A 361 3 5 17 0 3 4 4 5 6 8 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT W 362 W 362 5 5 17 3 5 5 7 7 8 9 11 12 14 14 15 15 16 17 18 19 20 20 22 LCS_GDT N 363 N 363 5 5 17 3 5 5 7 7 8 9 11 12 14 14 15 16 17 17 18 19 20 20 22 LCS_GDT P 364 P 364 5 5 17 3 5 5 7 7 7 8 10 12 14 14 15 16 17 17 18 19 20 20 22 LCS_GDT N 365 N 365 6 6 17 3 5 6 7 7 7 8 10 12 14 14 15 16 17 17 18 19 20 20 22 LCS_GDT L 366 L 366 6 6 17 3 5 6 6 7 8 9 11 12 14 14 15 16 17 17 18 19 20 20 22 LCS_GDT W 367 W 367 6 6 17 4 5 6 6 6 6 7 8 9 12 12 15 16 17 17 18 19 20 20 22 LCS_GDT K 368 K 368 6 6 16 4 5 6 6 6 6 7 8 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT K 369 K 369 6 6 16 4 5 6 6 6 6 7 8 9 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT G 370 G 370 6 6 16 4 5 6 6 6 6 7 8 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT T 371 T 371 3 9 16 3 3 5 7 8 8 9 9 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT N 372 N 372 7 9 16 3 6 7 7 8 8 9 9 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT G 373 G 373 7 9 16 3 6 7 7 8 8 9 9 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT Y 374 Y 374 7 9 16 3 6 7 7 8 8 9 9 10 12 12 15 16 17 17 18 19 19 20 20 LCS_GDT P 375 P 375 7 9 16 3 6 7 7 8 8 9 9 9 9 9 12 14 17 17 18 19 19 20 20 LCS_GDT I 376 I 376 7 9 16 3 6 7 7 8 8 9 9 9 11 12 15 16 17 17 18 19 20 20 22 LCS_GDT F 377 F 377 7 9 16 3 6 7 7 8 8 9 9 9 9 12 14 16 17 17 18 19 20 20 22 LCS_GDT Q 378 Q 378 7 9 12 3 4 7 7 8 8 9 10 11 12 12 15 16 17 17 18 19 20 20 22 LCS_GDT W 379 W 379 3 9 12 3 3 4 6 8 8 9 9 9 9 12 15 16 17 17 18 19 19 20 22 LCS_GDT S 380 S 380 3 4 11 3 3 4 4 4 4 5 6 6 8 9 11 13 13 17 18 19 19 20 22 LCS_GDT E 381 E 381 3 4 11 3 3 4 4 4 4 5 5 5 5 6 7 7 12 12 13 13 17 17 17 LCS_AVERAGE LCS_A: 30.07 ( 16.96 21.75 51.51 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 7 7 8 8 9 11 12 14 14 15 16 17 17 18 19 20 20 22 GDT PERCENT_AT 16.13 19.35 22.58 22.58 25.81 25.81 29.03 35.48 38.71 45.16 45.16 48.39 51.61 54.84 54.84 58.06 61.29 64.52 64.52 70.97 GDT RMS_LOCAL 0.06 0.56 0.94 0.94 1.36 1.36 1.85 2.81 3.12 3.51 3.51 3.89 4.95 5.16 5.16 5.38 5.74 5.96 5.96 6.57 GDT RMS_ALL_AT 15.76 22.55 21.94 21.94 22.24 22.24 21.48 13.05 14.93 14.97 14.97 15.36 17.15 17.22 17.22 16.72 16.65 12.14 12.14 12.84 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.959 1 0.125 0.160 3.905 61.548 50.556 LGA A 352 A 352 0.713 0 0.020 0.027 1.885 85.952 83.333 LGA E 353 E 353 1.339 4 0.033 0.032 2.449 88.333 46.455 LGA E 354 E 354 2.385 4 0.022 0.021 3.512 61.190 32.011 LGA L 355 L 355 3.136 3 0.613 0.599 5.054 46.071 26.964 LGA G 356 G 356 6.148 0 0.566 0.566 6.148 27.976 27.976 LGA N 357 N 357 4.086 3 0.588 0.574 5.243 33.214 23.750 LGA I 358 I 358 3.116 3 0.589 0.585 4.077 50.119 29.702 LGA I 359 I 359 7.857 3 0.573 0.583 9.947 7.143 3.631 LGA V 360 V 360 8.688 2 0.611 0.596 9.584 3.810 2.245 LGA A 361 A 361 4.030 0 0.666 0.599 6.660 41.190 38.190 LGA W 362 W 362 1.745 9 0.622 0.597 5.040 55.238 20.986 LGA N 363 N 363 3.493 3 0.151 0.175 4.310 55.833 32.560 LGA P 364 P 364 6.959 2 0.051 0.057 8.959 12.381 7.483 LGA N 365 N 365 6.675 3 0.600 0.538 8.649 30.000 15.357 LGA L 366 L 366 1.476 3 0.045 0.045 4.192 54.643 35.417 LGA W 367 W 367 7.419 9 0.050 0.068 10.033 11.429 3.265 LGA K 368 K 368 10.051 4 0.065 0.087 12.628 0.714 0.847 LGA K 369 K 369 16.159 4 0.051 0.072 18.342 0.000 0.000 LGA G 370 G 370 16.252 0 0.587 0.587 16.892 0.000 0.000 LGA T 371 T 371 15.735 2 0.290 0.294 18.839 0.000 0.000 LGA N 372 N 372 22.308 3 0.630 0.605 25.305 0.000 0.000 LGA G 373 G 373 24.347 0 0.573 0.573 24.426 0.000 0.000 LGA Y 374 Y 374 21.320 7 0.034 0.049 21.874 0.000 0.000 LGA P 375 P 375 19.097 2 0.065 0.081 20.597 0.000 0.000 LGA I 376 I 376 15.286 3 0.201 0.300 16.293 0.000 0.000 LGA F 377 F 377 15.218 6 0.159 0.196 17.685 0.000 0.000 LGA Q 378 Q 378 11.573 4 0.642 0.609 15.033 0.000 0.053 LGA W 379 W 379 18.134 9 0.649 0.600 19.697 0.000 0.000 LGA S 380 S 380 20.865 1 0.066 0.087 23.133 0.000 0.000 LGA E 381 E 381 26.810 5 0.521 0.527 28.231 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 152 59.84 31 SUMMARY(RMSD_GDC): 11.051 11.015 11.107 23.445 15.509 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.81 33.871 31.272 0.378 LGA_LOCAL RMSD: 2.807 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.045 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.051 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.272685 * X + 0.581634 * Y + -0.766384 * Z + 9.349936 Y_new = -0.868950 * X + -0.193053 * Y + -0.455693 * Z + 49.413555 Z_new = -0.412999 * X + 0.790210 * Y + 0.452768 * Z + 92.840950 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.266719 0.425745 1.050487 [DEG: -72.5776 24.3934 60.1885 ] ZXZ: -1.034356 1.100929 -0.481599 [DEG: -59.2642 63.0786 -27.5936 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS257_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS257_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.81 31.272 11.05 REMARK ---------------------------------------------------------- MOLECULE T0537TS257_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2390 N SER 351 2.527 14.740 50.643 1.00 0.00 N ATOM 2391 CA SER 351 3.186 15.547 51.664 1.00 0.00 C ATOM 2392 C SER 351 4.702 15.429 51.565 1.00 0.00 C ATOM 2393 O SER 351 5.248 14.327 51.534 1.00 0.00 O ATOM 2394 CB SER 351 2.713 15.129 53.043 1.00 0.00 C ATOM 2395 CEN SER 351 2.542 14.805 53.445 1.00 0.00 C ATOM 2396 H SER 351 2.483 13.738 50.760 1.00 0.00 H ATOM 2397 N ALA 352 5.376 16.573 51.516 1.00 0.00 N ATOM 2398 CA ALA 352 6.832 16.602 51.452 1.00 0.00 C ATOM 2399 C ALA 352 7.451 16.038 52.724 1.00 0.00 C ATOM 2400 O ALA 352 8.468 15.344 52.678 1.00 0.00 O ATOM 2401 CB ALA 352 7.324 18.020 51.203 1.00 0.00 C ATOM 2402 CEN ALA 352 7.324 18.019 51.204 1.00 0.00 C ATOM 2403 H ALA 352 4.867 17.445 51.523 1.00 0.00 H ATOM 2404 N GLU 353 6.831 16.338 53.861 1.00 0.00 N ATOM 2405 CA GLU 353 7.301 15.834 55.146 1.00 0.00 C ATOM 2406 C GLU 353 7.141 14.322 55.236 1.00 0.00 C ATOM 2407 O GLU 353 8.013 13.626 55.758 1.00 0.00 O ATOM 2408 CB GLU 353 6.549 16.512 56.294 1.00 0.00 C ATOM 2409 CEN GLU 353 6.478 17.699 57.515 1.00 0.00 C ATOM 2410 H GLU 353 6.015 16.931 53.834 1.00 0.00 H ATOM 2411 N GLU 354 6.023 13.818 54.725 1.00 0.00 N ATOM 2412 CA GLU 354 5.771 12.383 54.699 1.00 0.00 C ATOM 2413 C GLU 354 6.754 11.668 53.782 1.00 0.00 C ATOM 2414 O GLU 354 7.218 10.570 54.088 1.00 0.00 O ATOM 2415 CB GLU 354 4.335 12.099 54.253 1.00 0.00 C ATOM 2416 CEN GLU 354 2.717 11.724 54.635 1.00 0.00 C ATOM 2417 H GLU 354 5.329 14.447 54.345 1.00 0.00 H ATOM 2418 N LEU 355 7.070 12.298 52.655 1.00 0.00 N ATOM 2419 CA LEU 355 8.038 11.746 51.714 1.00 0.00 C ATOM 2420 C LEU 355 8.765 12.851 50.960 1.00 0.00 C ATOM 2421 O LEU 355 8.212 13.927 50.731 1.00 0.00 O ATOM 2422 CB LEU 355 7.339 10.799 50.729 1.00 0.00 C ATOM 2423 CEN LEU 355 7.286 9.264 50.615 1.00 0.00 C ATOM 2424 H LEU 355 6.628 13.181 52.445 1.00 0.00 H ATOM 2425 N GLY 356 10.008 12.580 50.577 1.00 0.00 N ATOM 2426 CA GLY 356 10.636 11.295 50.864 1.00 0.00 C ATOM 2427 C GLY 356 11.488 11.368 52.123 1.00 0.00 C ATOM 2428 O GLY 356 11.640 12.434 52.721 1.00 0.00 O ATOM 2429 CEN GLY 356 10.636 11.295 50.864 1.00 0.00 C ATOM 2430 H GLY 356 10.532 13.281 50.074 1.00 0.00 H ATOM 2431 N ASN 357 12.042 10.228 52.524 1.00 0.00 N ATOM 2432 CA ASN 357 12.905 10.167 53.698 1.00 0.00 C ATOM 2433 C ASN 357 14.097 9.249 53.457 1.00 0.00 C ATOM 2434 O ASN 357 13.962 8.190 52.844 1.00 0.00 O ATOM 2435 CB ASN 357 12.138 9.719 54.927 1.00 0.00 C ATOM 2436 CEN ASN 357 11.616 10.157 55.726 1.00 0.00 C ATOM 2437 H ASN 357 11.861 9.383 52.001 1.00 0.00 H ATOM 2438 N ILE 358 15.263 9.661 53.943 1.00 0.00 N ATOM 2439 CA ILE 358 16.491 8.903 53.735 1.00 0.00 C ATOM 2440 C ILE 358 17.171 8.581 55.059 1.00 0.00 C ATOM 2441 O ILE 358 17.426 9.471 55.870 1.00 0.00 O ATOM 2442 CB ILE 358 17.479 9.665 52.833 1.00 0.00 C ATOM 2443 CEN ILE 358 17.770 9.873 51.803 1.00 0.00 C ATOM 2444 H ILE 358 15.299 10.521 54.471 1.00 0.00 H ATOM 2445 N ILE 359 17.462 7.302 55.272 1.00 0.00 N ATOM 2446 CA ILE 359 18.108 6.859 56.502 1.00 0.00 C ATOM 2447 C ILE 359 18.970 5.626 56.259 1.00 0.00 C ATOM 2448 O ILE 359 18.678 4.817 55.377 1.00 0.00 O ATOM 2449 CB ILE 359 17.076 6.543 57.600 1.00 0.00 C ATOM 2450 CEN ILE 359 16.473 6.964 58.406 1.00 0.00 C ATOM 2451 H ILE 359 17.232 6.620 54.564 1.00 0.00 H ATOM 2452 N VAL 360 20.033 5.490 57.044 1.00 0.00 N ATOM 2453 CA VAL 360 20.352 6.465 58.079 1.00 0.00 C ATOM 2454 C VAL 360 21.854 6.543 58.318 1.00 0.00 C ATOM 2455 O VAL 360 22.572 5.557 58.145 1.00 0.00 O ATOM 2456 CB VAL 360 19.647 6.133 59.406 1.00 0.00 C ATOM 2457 CEN VAL 360 19.144 6.335 59.833 1.00 0.00 C ATOM 2458 H VAL 360 20.635 4.688 56.921 1.00 0.00 H ATOM 2459 N ALA 361 22.325 7.719 58.718 1.00 0.00 N ATOM 2460 CA ALA 361 21.449 8.868 58.915 1.00 0.00 C ATOM 2461 C ALA 361 21.731 9.957 57.888 1.00 0.00 C ATOM 2462 O ALA 361 22.886 10.294 57.627 1.00 0.00 O ATOM 2463 CB ALA 361 21.600 9.414 60.328 1.00 0.00 C ATOM 2464 CEN ALA 361 21.601 9.414 60.326 1.00 0.00 C ATOM 2465 H ALA 361 23.315 7.820 58.891 1.00 0.00 H ATOM 2466 N TRP 362 20.669 10.505 57.308 1.00 0.00 N ATOM 2467 CA TRP 362 20.792 11.640 56.400 1.00 0.00 C ATOM 2468 C TRP 362 20.199 12.903 57.012 1.00 0.00 C ATOM 2469 O TRP 362 19.058 12.902 57.475 1.00 0.00 O ATOM 2470 CB TRP 362 20.108 11.331 55.066 1.00 0.00 C ATOM 2471 CEN TRP 362 20.433 11.140 53.354 1.00 0.00 C ATOM 2472 H TRP 362 19.753 10.127 57.501 1.00 0.00 H ATOM 2473 N ASN 363 20.980 13.977 57.010 1.00 0.00 N ATOM 2474 CA ASN 363 20.512 15.265 57.509 1.00 0.00 C ATOM 2475 C ASN 363 20.684 16.357 56.462 1.00 0.00 C ATOM 2476 O ASN 363 21.766 16.526 55.899 1.00 0.00 O ATOM 2477 CB ASN 363 21.221 15.653 58.794 1.00 0.00 C ATOM 2478 CEN ASN 363 21.074 15.555 59.828 1.00 0.00 C ATOM 2479 H ASN 363 21.922 13.900 56.654 1.00 0.00 H ATOM 2480 N PRO 364 19.611 17.097 56.204 1.00 0.00 N ATOM 2481 CA PRO 364 19.616 18.117 55.162 1.00 0.00 C ATOM 2482 C PRO 364 20.713 19.147 55.404 1.00 0.00 C ATOM 2483 O PRO 364 21.157 19.825 54.477 1.00 0.00 O ATOM 2484 CB PRO 364 18.212 18.738 55.236 1.00 0.00 C ATOM 2485 CEN PRO 364 17.995 17.610 56.603 1.00 0.00 C ATOM 2486 N ASN 365 21.144 19.261 56.656 1.00 0.00 N ATOM 2487 CA ASN 365 22.130 20.264 57.038 1.00 0.00 C ATOM 2488 C ASN 365 23.144 19.694 58.021 1.00 0.00 C ATOM 2489 O ASN 365 22.811 19.393 59.167 1.00 0.00 O ATOM 2490 CB ASN 365 21.467 21.498 57.625 1.00 0.00 C ATOM 2491 CEN ASN 365 21.114 22.429 57.292 1.00 0.00 C ATOM 2492 H ASN 365 20.780 18.635 57.360 1.00 0.00 H ATOM 2493 N LEU 366 24.384 19.547 57.565 1.00 0.00 N ATOM 2494 CA LEU 366 25.451 19.021 58.406 1.00 0.00 C ATOM 2495 C LEU 366 25.856 20.025 59.478 1.00 0.00 C ATOM 2496 O LEU 366 26.097 19.659 60.627 1.00 0.00 O ATOM 2497 CB LEU 366 26.664 18.640 57.547 1.00 0.00 C ATOM 2498 CEN LEU 366 27.221 17.286 57.067 1.00 0.00 C ATOM 2499 H LEU 366 24.592 19.807 56.612 1.00 0.00 H ATOM 2500 N TRP 367 25.928 21.295 59.093 1.00 0.00 N ATOM 2501 CA TRP 367 26.248 22.363 60.033 1.00 0.00 C ATOM 2502 C TRP 367 25.864 23.726 59.470 1.00 0.00 C ATOM 2503 O TRP 367 25.659 23.875 58.265 1.00 0.00 O ATOM 2504 CB TRP 367 27.737 22.340 60.380 1.00 0.00 C ATOM 2505 CEN TRP 367 28.843 22.119 61.722 1.00 0.00 C ATOM 2506 H TRP 367 25.758 21.527 58.125 1.00 0.00 H ATOM 2507 N LYS 368 25.769 24.718 60.348 1.00 0.00 N ATOM 2508 CA LYS 368 25.413 26.072 59.938 1.00 0.00 C ATOM 2509 C LYS 368 26.137 27.110 60.785 1.00 0.00 C ATOM 2510 O LYS 368 26.353 26.910 61.981 1.00 0.00 O ATOM 2511 CB LYS 368 23.901 26.279 60.030 1.00 0.00 C ATOM 2512 CEN LYS 368 22.034 26.441 59.050 1.00 0.00 C ATOM 2513 H LYS 368 25.947 24.530 61.324 1.00 0.00 H ATOM 2514 N LYS 369 26.510 28.222 60.158 1.00 0.00 N ATOM 2515 CA LYS 369 27.209 29.296 60.854 1.00 0.00 C ATOM 2516 C LYS 369 26.375 29.841 62.005 1.00 0.00 C ATOM 2517 O LYS 369 25.174 30.069 61.860 1.00 0.00 O ATOM 2518 CB LYS 369 27.563 30.421 59.881 1.00 0.00 C ATOM 2519 CEN LYS 369 29.025 31.418 58.721 1.00 0.00 C ATOM 2520 H LYS 369 26.305 28.324 59.175 1.00 0.00 H ATOM 2521 N GLY 370 27.018 30.048 63.150 1.00 0.00 N ATOM 2522 CA GLY 370 26.378 30.714 64.278 1.00 0.00 C ATOM 2523 C GLY 370 25.338 29.813 64.932 1.00 0.00 C ATOM 2524 O GLY 370 24.362 30.294 65.508 1.00 0.00 O ATOM 2525 CEN GLY 370 26.378 30.714 64.278 1.00 0.00 C ATOM 2526 H GLY 370 27.974 29.736 63.239 1.00 0.00 H ATOM 2527 N THR 371 25.552 28.506 64.838 1.00 0.00 N ATOM 2528 CA THR 371 24.627 27.534 65.409 1.00 0.00 C ATOM 2529 C THR 371 25.274 26.757 66.547 1.00 0.00 C ATOM 2530 O THR 371 24.886 25.626 66.839 1.00 0.00 O ATOM 2531 CB THR 371 24.121 26.543 64.345 1.00 0.00 C ATOM 2532 CEN THR 371 23.847 26.423 63.843 1.00 0.00 C ATOM 2533 H THR 371 26.378 28.175 64.360 1.00 0.00 H ATOM 2534 N ASN 372 26.265 27.370 67.186 1.00 0.00 N ATOM 2535 CA ASN 372 26.817 26.844 68.429 1.00 0.00 C ATOM 2536 C ASN 372 27.341 27.964 69.317 1.00 0.00 C ATOM 2537 O ASN 372 27.786 29.002 68.825 1.00 0.00 O ATOM 2538 CB ASN 372 27.911 25.827 68.165 1.00 0.00 C ATOM 2539 CEN ASN 372 28.002 24.786 68.054 1.00 0.00 C ATOM 2540 H ASN 372 26.646 28.222 66.801 1.00 0.00 H ATOM 2541 N GLY 373 27.289 27.750 70.626 1.00 0.00 N ATOM 2542 CA GLY 373 26.757 26.509 71.178 1.00 0.00 C ATOM 2543 C GLY 373 25.282 26.653 71.536 1.00 0.00 C ATOM 2544 O GLY 373 24.938 27.201 72.583 1.00 0.00 O ATOM 2545 CEN GLY 373 26.756 26.509 71.179 1.00 0.00 C ATOM 2546 H GLY 373 27.625 28.464 71.257 1.00 0.00 H ATOM 2547 N TYR 374 24.415 26.158 70.658 1.00 0.00 N ATOM 2548 CA TYR 374 22.976 26.323 70.827 1.00 0.00 C ATOM 2549 C TYR 374 22.305 24.995 71.149 1.00 0.00 C ATOM 2550 O TYR 374 22.524 23.995 70.465 1.00 0.00 O ATOM 2551 CB TYR 374 22.357 26.934 69.569 1.00 0.00 C ATOM 2552 CEN TYR 374 21.796 28.475 68.953 1.00 0.00 C ATOM 2553 H TYR 374 24.762 25.656 69.854 1.00 0.00 H ATOM 2554 N PRO 375 21.485 24.990 72.196 1.00 0.00 N ATOM 2555 CA PRO 375 20.709 23.809 72.556 1.00 0.00 C ATOM 2556 C PRO 375 19.800 23.377 71.413 1.00 0.00 C ATOM 2557 O PRO 375 19.067 24.189 70.849 1.00 0.00 O ATOM 2558 CB PRO 375 19.912 24.248 73.796 1.00 0.00 C ATOM 2559 CEN PRO 375 20.699 25.824 73.508 1.00 0.00 C ATOM 2560 N ILE 376 19.853 22.093 71.076 1.00 0.00 N ATOM 2561 CA ILE 376 19.046 21.553 69.988 1.00 0.00 C ATOM 2562 C ILE 376 18.432 20.213 70.370 1.00 0.00 C ATOM 2563 O ILE 376 19.111 19.340 70.911 1.00 0.00 O ATOM 2564 CB ILE 376 19.874 21.380 68.702 1.00 0.00 C ATOM 2565 CEN ILE 376 20.240 21.876 67.803 1.00 0.00 C ATOM 2566 H ILE 376 20.468 21.474 71.585 1.00 0.00 H ATOM 2567 N PHE 377 17.144 20.054 70.086 1.00 0.00 N ATOM 2568 CA PHE 377 16.466 18.779 70.286 1.00 0.00 C ATOM 2569 C PHE 377 15.892 18.250 68.978 1.00 0.00 C ATOM 2570 O PHE 377 15.027 18.879 68.369 1.00 0.00 O ATOM 2571 CB PHE 377 15.356 18.922 71.329 1.00 0.00 C ATOM 2572 CEN PHE 377 15.136 18.640 72.878 1.00 0.00 C ATOM 2573 H PHE 377 16.621 20.837 69.722 1.00 0.00 H ATOM 2574 N GLN 378 16.377 17.089 68.552 1.00 0.00 N ATOM 2575 CA GLN 378 15.963 16.505 67.281 1.00 0.00 C ATOM 2576 C GLN 378 15.157 15.232 67.497 1.00 0.00 C ATOM 2577 O GLN 378 15.256 14.593 68.545 1.00 0.00 O ATOM 2578 CB GLN 378 17.183 16.204 66.407 1.00 0.00 C ATOM 2579 CEN GLN 378 18.144 16.771 65.064 1.00 0.00 C ATOM 2580 H GLN 378 17.051 16.598 69.121 1.00 0.00 H ATOM 2581 N TRP 379 14.359 14.866 66.500 1.00 0.00 N ATOM 2582 CA TRP 379 13.562 13.647 66.564 1.00 0.00 C ATOM 2583 C TRP 379 14.009 12.639 65.513 1.00 0.00 C ATOM 2584 O TRP 379 14.405 13.014 64.409 1.00 0.00 O ATOM 2585 CB TRP 379 12.077 13.971 66.382 1.00 0.00 C ATOM 2586 CEN TRP 379 10.532 13.895 67.206 1.00 0.00 C ATOM 2587 H TRP 379 14.304 15.447 65.675 1.00 0.00 H ATOM 2588 N SER 380 13.943 11.359 65.862 1.00 0.00 N ATOM 2589 CA SER 380 14.114 10.290 64.886 1.00 0.00 C ATOM 2590 C SER 380 13.066 9.200 65.073 1.00 0.00 C ATOM 2591 O SER 380 12.458 9.087 66.137 1.00 0.00 O ATOM 2592 CB SER 380 15.509 9.704 64.994 1.00 0.00 C ATOM 2593 CEN SER 380 15.973 9.536 65.221 1.00 0.00 C ATOM 2594 H SER 380 13.769 11.121 66.828 1.00 0.00 H ATOM 2595 N GLU 381 12.859 8.400 64.033 1.00 0.00 N ATOM 2596 CA GLU 381 11.916 7.290 64.095 1.00 0.00 C ATOM 2597 C GLU 381 12.346 6.151 63.180 1.00 0.00 C ATOM 2598 O GLU 381 12.533 5.246 63.561 1.00 0.00 O ATOM 2599 CB GLU 381 10.508 7.761 63.724 1.00 0.00 C ATOM 2600 CEN GLU 381 8.950 8.267 64.191 1.00 0.00 C ATOM 2601 H GLU 381 13.368 8.566 63.176 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 152 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.30 35.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 108.29 27.3 22 100.0 22 ARMSMC SURFACE . . . . . . . . 82.72 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 116.76 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.05 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.05 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3565 CRMSCA SECONDARY STRUCTURE . . 6.61 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.12 26 100.0 26 CRMSCA BURIED . . . . . . . . 10.69 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.11 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.64 54 100.0 54 CRMSMC SURFACE . . . . . . . . 11.22 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.50 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.51 28 21.5 130 CRMSSC RELIABLE SIDE CHAINS . 11.51 28 24.6 114 CRMSSC SECONDARY STRUCTURE . . 7.15 10 24.4 41 CRMSSC SURFACE . . . . . . . . 11.49 25 20.8 120 CRMSSC BURIED . . . . . . . . 11.64 3 30.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.11 152 59.8 254 CRMSALL SECONDARY STRUCTURE . . 6.64 54 63.5 85 CRMSALL SURFACE . . . . . . . . 11.22 129 57.6 224 CRMSALL BURIED . . . . . . . . 10.50 23 76.7 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.079 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.188 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 10.011 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.433 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.122 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.275 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 10.114 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 10.167 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.297 1.000 0.500 28 21.5 130 ERRSC RELIABLE SIDE CHAINS . 10.297 1.000 0.500 28 24.6 114 ERRSC SECONDARY STRUCTURE . . 6.526 1.000 0.500 10 24.4 41 ERRSC SURFACE . . . . . . . . 10.185 1.000 0.500 25 20.8 120 ERRSC BURIED . . . . . . . . 11.234 1.000 0.500 3 30.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.122 1.000 0.500 152 59.8 254 ERRALL SECONDARY STRUCTURE . . 6.275 1.000 0.500 54 63.5 85 ERRALL SURFACE . . . . . . . . 10.114 1.000 0.500 129 57.6 224 ERRALL BURIED . . . . . . . . 10.167 1.000 0.500 23 76.7 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 3 17 31 31 DISTCA CA (P) 0.00 3.23 3.23 9.68 54.84 31 DISTCA CA (RMS) 0.00 1.64 1.64 3.58 7.02 DISTCA ALL (N) 0 1 4 16 85 152 254 DISTALL ALL (P) 0.00 0.39 1.57 6.30 33.46 254 DISTALL ALL (RMS) 0.00 1.64 2.11 3.69 7.11 DISTALL END of the results output