####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS253_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS253_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 358 - 375 4.72 11.66 LCS_AVERAGE: 53.90 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.81 15.42 LCS_AVERAGE: 18.21 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.43 19.83 LCS_AVERAGE: 14.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 16 5 6 6 6 6 6 7 9 10 12 13 14 17 20 21 24 24 24 24 25 LCS_GDT A 352 A 352 6 6 16 5 6 6 6 6 7 7 9 10 12 13 17 19 20 22 24 24 24 24 25 LCS_GDT E 353 E 353 6 6 16 5 6 6 6 6 7 7 9 10 12 13 17 19 20 22 24 24 24 24 25 LCS_GDT E 354 E 354 6 6 16 5 6 6 6 6 8 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT L 355 L 355 6 6 16 5 6 6 6 6 7 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT G 356 G 356 6 6 16 4 6 6 6 6 6 7 9 10 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT N 357 N 357 4 5 16 3 4 4 4 5 7 7 9 10 12 13 17 19 20 21 24 24 24 24 25 LCS_GDT I 358 I 358 4 5 18 3 4 4 6 7 7 8 9 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT I 359 I 359 4 5 18 3 5 6 6 7 8 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT V 360 V 360 4 5 18 4 5 6 6 7 9 9 11 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT A 361 A 361 4 5 18 4 5 6 6 7 8 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT W 362 W 362 4 7 18 4 4 6 6 6 8 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT N 363 N 363 5 7 18 4 5 5 6 7 7 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT P 364 P 364 5 7 18 4 5 5 6 6 7 8 10 11 12 14 16 18 19 22 24 24 24 24 25 LCS_GDT N 365 N 365 5 7 18 4 5 5 6 6 7 8 10 11 12 14 16 18 19 22 24 24 24 24 25 LCS_GDT L 366 L 366 5 7 18 4 5 5 6 7 7 8 10 12 12 15 17 19 20 22 24 24 24 24 25 LCS_GDT W 367 W 367 5 7 18 3 5 5 6 6 7 8 10 11 12 14 16 18 19 22 24 24 24 24 25 LCS_GDT K 368 K 368 4 7 18 4 4 4 6 6 7 8 9 9 12 14 16 18 18 20 22 23 24 24 25 LCS_GDT K 369 K 369 4 5 18 4 4 4 4 5 5 7 8 9 11 13 16 18 18 20 22 23 24 24 24 LCS_GDT G 370 G 370 4 5 18 4 4 4 4 5 6 8 9 9 12 14 16 18 18 20 22 23 24 24 24 LCS_GDT T 371 T 371 4 5 18 4 4 4 5 6 9 9 11 11 12 14 16 18 18 20 22 23 24 24 24 LCS_GDT N 372 N 372 4 5 18 3 3 4 4 4 9 9 11 11 12 13 14 18 18 19 22 23 24 24 24 LCS_GDT G 373 G 373 4 5 18 3 3 4 5 7 9 9 11 11 12 14 16 18 18 20 22 23 24 24 24 LCS_GDT Y 374 Y 374 4 5 18 3 3 4 5 7 9 9 11 11 12 14 16 18 18 20 22 23 24 24 25 LCS_GDT P 375 P 375 4 5 18 3 3 4 6 7 9 9 11 11 12 14 16 18 20 22 24 24 24 24 25 LCS_GDT I 376 I 376 3 5 17 3 3 3 4 7 9 9 11 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT F 377 F 377 3 5 13 3 3 4 4 5 7 8 11 11 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT Q 378 Q 378 3 5 13 4 5 6 6 6 8 8 10 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT W 379 W 379 3 5 13 3 3 4 4 5 5 9 11 11 12 15 17 19 20 22 24 24 24 24 24 LCS_GDT S 380 S 380 3 5 13 3 5 6 6 7 9 9 11 12 13 15 17 19 20 22 24 24 24 24 25 LCS_GDT E 381 E 381 3 5 13 1 3 3 5 7 9 9 11 12 13 15 17 19 20 22 24 24 24 24 25 LCS_AVERAGE LCS_A: 28.72 ( 14.05 18.21 53.90 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 6 7 9 9 11 12 13 15 17 19 20 22 24 24 24 24 25 GDT PERCENT_AT 16.13 19.35 19.35 19.35 22.58 29.03 29.03 35.48 38.71 41.94 48.39 54.84 61.29 64.52 70.97 77.42 77.42 77.42 77.42 80.65 GDT RMS_LOCAL 0.22 0.43 0.43 0.43 1.53 2.05 2.05 2.83 3.20 3.53 3.84 4.17 4.59 4.76 5.35 5.60 5.60 5.60 5.60 6.42 GDT RMS_ALL_AT 20.54 19.83 19.83 19.83 9.82 11.32 11.32 11.65 10.36 10.75 11.00 10.84 10.75 10.58 9.77 9.78 9.78 9.78 9.78 9.16 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 19.772 0 0.623 0.562 20.047 0.000 0.000 LGA A 352 A 352 19.347 0 0.027 0.034 19.816 0.000 0.000 LGA E 353 E 353 20.654 0 0.041 0.703 22.097 0.000 0.000 LGA E 354 E 354 19.162 0 0.076 0.966 20.508 0.000 0.000 LGA L 355 L 355 17.613 0 0.104 0.188 18.229 0.000 0.000 LGA G 356 G 356 17.242 0 0.172 0.172 17.602 0.000 0.000 LGA N 357 N 357 13.137 0 0.152 1.317 16.380 0.357 0.179 LGA I 358 I 358 9.016 0 0.267 0.304 13.118 5.476 3.095 LGA I 359 I 359 7.084 0 0.434 1.378 9.874 24.405 13.571 LGA V 360 V 360 1.885 0 0.476 0.503 4.753 51.071 50.068 LGA A 361 A 361 5.468 0 0.049 0.053 9.821 19.286 22.857 LGA W 362 W 362 11.202 0 0.373 0.858 13.222 1.190 0.782 LGA N 363 N 363 13.857 0 0.368 0.635 16.458 0.000 0.000 LGA P 364 P 364 14.885 0 0.284 0.421 15.721 0.000 0.000 LGA N 365 N 365 17.401 0 0.146 0.260 19.430 0.000 0.000 LGA L 366 L 366 14.743 0 0.000 1.431 15.389 0.000 0.000 LGA W 367 W 367 13.539 0 0.616 1.292 18.186 0.000 0.000 LGA K 368 K 368 13.467 0 0.644 0.675 20.003 0.000 0.000 LGA K 369 K 369 9.340 0 0.579 0.582 10.287 0.714 3.228 LGA G 370 G 370 8.017 0 0.395 0.395 8.139 18.214 18.214 LGA T 371 T 371 2.711 0 0.485 0.466 5.205 59.048 54.898 LGA N 372 N 372 3.019 0 0.562 1.177 7.826 60.238 37.619 LGA G 373 G 373 1.604 0 0.076 0.076 2.087 72.976 72.976 LGA Y 374 Y 374 2.426 0 0.029 0.240 4.784 66.786 51.548 LGA P 375 P 375 2.933 0 0.611 0.613 4.785 50.714 48.503 LGA I 376 I 376 2.534 0 0.643 0.549 9.450 59.524 36.131 LGA F 377 F 377 4.928 0 0.671 1.259 7.514 34.048 20.693 LGA Q 378 Q 378 6.746 0 0.271 0.365 14.564 20.714 9.365 LGA W 379 W 379 3.937 0 0.104 0.118 5.369 48.810 44.694 LGA S 380 S 380 1.411 0 0.642 0.813 3.300 81.786 72.381 LGA E 381 E 381 1.769 0 0.104 0.805 8.160 61.905 40.667 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.515 8.419 9.782 23.783 19.402 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.83 37.903 31.746 0.375 LGA_LOCAL RMSD: 2.835 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.653 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.515 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.533945 * X + 0.429248 * Y + -0.728456 * Z + 38.258915 Y_new = 0.841434 * X + -0.185175 * Y + 0.507641 * Z + 61.006428 Z_new = 0.083012 * X + -0.884000 * Y + -0.460057 * Z + 13.518643 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.005348 -0.083108 -2.050651 [DEG: 57.6022 -4.7617 -117.4937 ] ZXZ: -2.179420 2.048856 3.047962 [DEG: -124.8716 117.3908 174.6354 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS253_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS253_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.83 31.746 8.52 REMARK ---------------------------------------------------------- MOLECULE T0537TS253_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1tbg_A 1rmg__ 1gxr_A 1dbg_A 2aq5_A ATOM 4971 N SER 351 18.374 8.015 64.685 1.00 0.50 N ATOM 4972 CA SER 351 18.831 7.798 63.318 1.00 0.50 C ATOM 4973 C SER 351 19.991 8.723 62.971 1.00 0.50 C ATOM 4974 O SER 351 20.917 8.333 62.260 1.00 0.50 O ATOM 4975 CB SER 351 17.682 8.016 62.331 1.00 0.50 C ATOM 4976 OG SER 351 17.381 9.397 62.216 1.00 0.50 O ATOM 4982 N ALA 352 19.935 9.950 63.478 1.00 0.50 N ATOM 4983 CA ALA 352 21.001 10.919 63.260 1.00 0.50 C ATOM 4984 C ALA 352 22.307 10.451 63.890 1.00 0.50 C ATOM 4985 O ALA 352 23.365 10.507 63.264 1.00 0.50 O ATOM 4986 CB ALA 352 20.604 12.277 63.830 1.00 0.50 C ATOM 4992 N GLU 353 22.226 9.992 65.135 1.00 0.50 N ATOM 4993 CA GLU 353 23.395 9.478 65.839 1.00 0.50 C ATOM 4994 C GLU 353 23.928 8.217 65.173 1.00 0.50 C ATOM 4995 O GLU 353 25.139 8.013 65.089 1.00 0.50 O ATOM 4996 CB GLU 353 23.051 9.188 67.303 1.00 0.50 C ATOM 4997 CG GLU 353 22.037 8.067 67.486 1.00 0.50 C ATOM 4998 CD GLU 353 21.664 7.824 68.937 1.00 0.50 C ATOM 4999 OE1 GLU 353 21.528 6.652 69.346 1.00 0.50 O ATOM 5000 OE2 GLU 353 21.494 8.825 69.674 1.00 0.50 O ATOM 5007 N GLU 354 23.017 7.371 64.704 1.00 0.50 N ATOM 5008 CA GLU 354 23.392 6.096 64.104 1.00 0.50 C ATOM 5009 C GLU 354 24.321 6.299 62.913 1.00 0.50 C ATOM 5010 O GLU 354 25.432 5.771 62.883 1.00 0.50 O ATOM 5011 CB GLU 354 22.143 5.326 63.664 1.00 0.50 C ATOM 5012 CG GLU 354 22.447 3.963 63.055 1.00 0.50 C ATOM 5013 CD GLU 354 21.207 3.229 62.576 1.00 0.50 C ATOM 5014 OE1 GLU 354 20.085 3.761 62.725 1.00 0.50 O ATOM 5015 OE2 GLU 354 21.360 2.099 62.053 1.00 0.50 O ATOM 5022 N LEU 355 23.858 7.068 61.933 1.00 0.50 N ATOM 5023 CA LEU 355 24.646 7.343 60.738 1.00 0.50 C ATOM 5024 C LEU 355 25.653 8.459 60.986 1.00 0.50 C ATOM 5025 O LEU 355 26.631 8.600 60.253 1.00 0.50 O ATOM 5026 CB LEU 355 23.726 7.727 59.573 1.00 0.50 C ATOM 5027 CG LEU 355 22.916 6.589 58.947 1.00 0.50 C ATOM 5028 CD1 LEU 355 21.731 7.152 58.174 1.00 0.50 C ATOM 5029 CD2 LEU 355 23.803 5.755 58.031 1.00 0.50 C ATOM 5041 N GLY 356 25.405 9.252 62.023 1.00 0.50 N ATOM 5042 CA GLY 356 26.290 10.358 62.369 1.00 0.50 C ATOM 5043 C GLY 356 25.594 11.700 62.179 1.00 0.50 C ATOM 5044 O GLY 356 25.144 12.320 63.143 1.00 0.50 O ATOM 5048 N ASN 357 25.510 12.145 60.930 1.00 0.50 N ATOM 5049 CA ASN 357 24.869 13.416 60.611 1.00 0.50 C ATOM 5050 C ASN 357 23.417 13.212 60.199 1.00 0.50 C ATOM 5051 O ASN 357 22.498 13.476 60.975 1.00 0.50 O ATOM 5052 CB ASN 357 25.638 14.140 59.501 1.00 0.50 C ATOM 5053 CG ASN 357 25.114 15.541 59.248 1.00 0.50 C ATOM 5054 OD1 ASN 357 25.273 16.087 58.152 1.00 0.50 O ATOM 5055 ND2 ASN 357 24.486 16.134 60.256 1.00 0.50 N ATOM 5062 N ILE 358 23.216 12.740 58.973 1.00 0.50 N ATOM 5063 CA ILE 358 21.874 12.500 58.454 1.00 0.50 C ATOM 5064 C ILE 358 21.005 13.745 58.578 1.00 0.50 C ATOM 5065 O ILE 358 21.115 14.673 57.778 1.00 0.50 O ATOM 5066 CB ILE 358 21.193 11.322 59.191 1.00 0.50 C ATOM 5067 CG1 ILE 358 21.985 10.028 58.968 1.00 0.50 C ATOM 5068 CG2 ILE 358 19.746 11.159 58.724 1.00 0.50 C ATOM 5069 CD1 ILE 358 21.690 8.946 59.995 1.00 0.50 C ATOM 5081 N ILE 359 20.137 13.757 59.585 1.00 0.50 N ATOM 5082 CA ILE 359 19.247 14.888 59.815 1.00 0.50 C ATOM 5083 C ILE 359 18.066 14.864 58.852 1.00 0.50 C ATOM 5084 O ILE 359 17.571 13.798 58.488 1.00 0.50 O ATOM 5085 CB ILE 359 20.001 16.231 59.672 1.00 0.50 C ATOM 5086 CG1 ILE 359 20.569 16.373 58.254 1.00 0.50 C ATOM 5087 CG2 ILE 359 21.115 16.339 60.714 1.00 0.50 C ATOM 5088 CD1 ILE 359 21.132 17.754 57.955 1.00 0.50 C ATOM 5100 N VAL 360 17.620 16.046 58.442 1.00 0.50 N ATOM 5101 CA VAL 360 16.497 16.164 57.520 1.00 0.50 C ATOM 5102 C VAL 360 15.367 15.217 57.904 1.00 0.50 C ATOM 5103 O VAL 360 15.094 15.010 59.087 1.00 0.50 O ATOM 5104 CB VAL 360 16.933 15.879 56.065 1.00 0.50 C ATOM 5105 CG1 VAL 360 15.742 15.971 55.116 1.00 0.50 C ATOM 5106 CG2 VAL 360 18.024 16.853 55.637 1.00 0.50 C ATOM 5116 N ALA 361 14.713 14.645 56.900 1.00 0.50 N ATOM 5117 CA ALA 361 13.610 13.720 57.130 1.00 0.50 C ATOM 5118 C ALA 361 12.591 14.307 58.099 1.00 0.50 C ATOM 5119 O ALA 361 11.487 13.783 58.246 1.00 0.50 O ATOM 5120 CB ALA 361 14.140 12.395 57.671 1.00 0.50 C ATOM 5126 N TRP 362 12.968 15.398 58.757 1.00 0.50 N ATOM 5127 CA TRP 362 12.087 16.059 59.712 1.00 0.50 C ATOM 5128 C TRP 362 11.782 15.153 60.898 1.00 0.50 C ATOM 5129 O TRP 362 12.670 14.820 61.682 1.00 0.50 O ATOM 5130 CB TRP 362 10.781 16.482 59.030 1.00 0.50 C ATOM 5131 CG TRP 362 10.948 17.587 58.028 1.00 0.50 C ATOM 5132 CD1 TRP 362 10.853 18.932 58.263 1.00 0.50 C ATOM 5133 CD2 TRP 362 11.237 17.440 56.633 1.00 0.50 C ATOM 5134 NE1 TRP 362 11.067 19.628 57.098 1.00 0.50 N ATOM 5135 CE2 TRP 362 11.304 18.738 56.084 1.00 0.50 C ATOM 5136 CE3 TRP 362 11.447 16.336 55.798 1.00 0.50 C ATOM 5137 CZ2 TRP 362 11.573 18.964 54.732 1.00 0.50 C ATOM 5138 CZ3 TRP 362 11.713 16.559 54.453 1.00 0.50 C ATOM 5139 CH2 TRP 362 11.774 17.863 53.933 1.00 0.50 H ATOM 5150 N ASN 363 10.519 14.759 61.025 1.00 0.50 N ATOM 5151 CA ASN 363 10.094 13.891 62.116 1.00 0.50 C ATOM 5152 C ASN 363 8.774 14.363 62.713 1.00 0.50 C ATOM 5153 O ASN 363 8.450 14.044 63.857 1.00 0.50 O ATOM 5154 CB ASN 363 11.175 13.828 63.201 1.00 0.50 C ATOM 5155 CG ASN 363 10.934 12.709 64.196 1.00 0.50 C ATOM 5156 OD1 ASN 363 9.922 12.700 64.904 1.00 0.50 O ATOM 5157 ND2 ASN 363 11.858 11.759 64.263 1.00 0.50 N ATOM 5164 N PRO 364 8.017 15.126 61.933 1.00 0.50 N ATOM 5165 CA PRO 364 6.731 15.645 62.383 1.00 0.50 C ATOM 5166 C PRO 364 6.823 17.126 62.728 1.00 0.50 C ATOM 5167 O PRO 364 6.285 17.972 62.015 1.00 0.50 O ATOM 5168 CB PRO 364 6.405 14.790 63.610 1.00 0.50 C ATOM 5169 CG PRO 364 7.752 14.440 64.172 1.00 0.50 C ATOM 5170 CD PRO 364 8.615 14.182 62.957 1.00 0.50 C ATOM 5178 N ASN 365 7.507 17.431 63.824 1.00 0.50 N ATOM 5179 CA ASN 365 7.672 18.811 64.265 1.00 0.50 C ATOM 5180 C ASN 365 8.261 19.676 63.159 1.00 0.50 C ATOM 5181 O ASN 365 7.812 20.799 62.929 1.00 0.50 O ATOM 5182 CB ASN 365 8.558 18.871 65.515 1.00 0.50 C ATOM 5183 CG ASN 365 7.860 18.331 66.748 1.00 0.50 C ATOM 5184 OD1 ASN 365 6.772 18.789 67.110 1.00 0.50 O ATOM 5185 ND2 ASN 365 8.476 17.356 67.405 1.00 0.50 N ATOM 5192 N LEU 366 9.272 19.148 62.477 1.00 0.50 N ATOM 5193 CA LEU 366 9.926 19.872 61.393 1.00 0.50 C ATOM 5194 C LEU 366 8.933 20.238 60.297 1.00 0.50 C ATOM 5195 O LEU 366 8.873 21.386 59.859 1.00 0.50 O ATOM 5196 CB LEU 366 11.062 19.030 60.801 1.00 0.50 C ATOM 5197 CG LEU 366 12.080 18.470 61.798 1.00 0.50 C ATOM 5198 CD1 LEU 366 13.162 17.691 61.062 1.00 0.50 C ATOM 5199 CD2 LEU 366 12.696 19.602 62.610 1.00 0.50 C ATOM 5211 N TRP 367 8.155 19.254 59.857 1.00 0.50 N ATOM 5212 CA TRP 367 7.162 19.471 58.812 1.00 0.50 C ATOM 5213 C TRP 367 5.869 20.031 59.387 1.00 0.50 C ATOM 5214 O TRP 367 5.209 20.862 58.764 1.00 0.50 O ATOM 5215 CB TRP 367 6.877 18.162 58.065 1.00 0.50 C ATOM 5216 CG TRP 367 5.869 18.298 56.961 1.00 0.50 C ATOM 5217 CD1 TRP 367 4.584 17.828 56.960 1.00 0.50 C ATOM 5218 CD2 TRP 367 6.065 18.946 55.700 1.00 0.50 C ATOM 5219 NE1 TRP 367 3.969 18.146 55.772 1.00 0.50 N ATOM 5220 CE2 TRP 367 4.855 18.831 54.983 1.00 0.50 C ATOM 5221 CE3 TRP 367 7.147 19.611 55.110 1.00 0.50 C ATOM 5222 CZ2 TRP 367 4.696 19.359 53.699 1.00 0.50 C ATOM 5223 CZ3 TRP 367 6.988 20.136 53.832 1.00 0.50 C ATOM 5224 CH2 TRP 367 5.772 20.007 53.142 1.00 0.50 H ATOM 5235 N LYS 368 5.509 19.569 60.580 1.00 0.50 N ATOM 5236 CA LYS 368 4.292 20.022 61.243 1.00 0.50 C ATOM 5237 C LYS 368 4.436 21.456 61.739 1.00 0.50 C ATOM 5238 O LYS 368 3.463 22.208 61.784 1.00 0.50 O ATOM 5239 CB LYS 368 3.946 19.101 62.415 1.00 0.50 C ATOM 5240 CG LYS 368 2.762 19.578 63.242 1.00 0.50 C ATOM 5241 CD LYS 368 2.332 18.526 64.256 1.00 0.50 C ATOM 5242 CE LYS 368 1.222 19.040 65.165 1.00 0.50 C ATOM 5243 NZ LYS 368 0.699 17.968 66.059 1.00 0.50 N ATOM 5257 N LYS 369 5.656 21.828 62.111 1.00 0.50 N ATOM 5258 CA LYS 369 5.930 23.172 62.603 1.00 0.50 C ATOM 5259 C LYS 369 5.418 24.230 61.635 1.00 0.50 C ATOM 5260 O LYS 369 4.646 25.112 62.015 1.00 0.50 O ATOM 5261 CB LYS 369 7.432 23.363 62.831 1.00 0.50 C ATOM 5262 CG LYS 369 7.934 22.771 64.139 1.00 0.50 C ATOM 5263 CD LYS 369 9.421 23.036 64.335 1.00 0.50 C ATOM 5264 CE LYS 369 9.960 22.337 65.579 1.00 0.50 C ATOM 5265 NZ LYS 369 11.444 22.443 65.673 1.00 0.50 N ATOM 5279 N GLY 370 5.851 24.137 60.382 1.00 0.50 N ATOM 5280 CA GLY 370 5.436 25.086 59.356 1.00 0.50 C ATOM 5281 C GLY 370 6.624 25.557 58.528 1.00 0.50 C ATOM 5282 O GLY 370 7.046 24.881 57.589 1.00 0.50 O ATOM 5286 N THR 371 7.160 26.720 58.878 1.00 0.50 N ATOM 5287 CA THR 371 8.302 27.284 58.168 1.00 0.50 C ATOM 5288 C THR 371 9.500 26.343 58.216 1.00 0.50 C ATOM 5289 O THR 371 10.503 26.634 58.868 1.00 0.50 O ATOM 5290 CB THR 371 8.706 28.653 58.759 1.00 0.50 C ATOM 5291 OG1 THR 371 9.069 28.473 60.134 1.00 0.50 O ATOM 5292 CG2 THR 371 7.558 29.650 58.670 1.00 0.50 C ATOM 5300 N ASN 372 9.387 25.214 57.525 1.00 0.50 N ATOM 5301 CA ASN 372 10.461 24.229 57.487 1.00 0.50 C ATOM 5302 C ASN 372 10.683 23.709 56.072 1.00 0.50 C ATOM 5303 O ASN 372 11.303 24.378 55.246 1.00 0.50 O ATOM 5304 CB ASN 372 10.152 23.065 58.436 1.00 0.50 C ATOM 5305 CG ASN 372 10.220 23.473 59.896 1.00 0.50 C ATOM 5306 OD1 ASN 372 9.361 23.096 60.698 1.00 0.50 O ATOM 5307 ND2 ASN 372 11.238 24.245 60.254 1.00 0.50 N ATOM 5314 N GLY 373 10.174 22.513 55.800 1.00 0.50 N ATOM 5315 CA GLY 373 10.316 21.901 54.485 1.00 0.50 C ATOM 5316 C GLY 373 11.783 21.759 54.099 1.00 0.50 C ATOM 5317 O GLY 373 12.165 20.809 53.414 1.00 0.50 O ATOM 5321 N TYR 374 12.600 22.709 54.540 1.00 0.50 N ATOM 5322 CA TYR 374 14.028 22.691 54.241 1.00 0.50 C ATOM 5323 C TYR 374 14.858 22.719 55.519 1.00 0.50 C ATOM 5324 O TYR 374 14.660 23.577 56.380 1.00 0.50 O ATOM 5325 CB TYR 374 14.404 23.885 53.353 1.00 0.50 C ATOM 5326 CG TYR 374 14.023 23.703 51.899 1.00 0.50 C ATOM 5327 CD1 TYR 374 14.898 23.096 51.001 1.00 0.50 C ATOM 5328 CD2 TYR 374 12.788 24.142 51.428 1.00 0.50 C ATOM 5329 CE1 TYR 374 14.552 22.929 49.663 1.00 0.50 C ATOM 5330 CE2 TYR 374 12.432 23.980 50.094 1.00 0.50 C ATOM 5331 CZ TYR 374 13.320 23.374 49.219 1.00 0.50 C ATOM 5332 OH TYR 374 12.969 23.212 47.897 1.00 0.50 H ATOM 5342 N PRO 375 15.786 21.776 55.635 1.00 0.50 N ATOM 5343 CA PRO 375 16.735 21.768 56.742 1.00 0.50 C ATOM 5344 C PRO 375 18.170 21.698 56.238 1.00 0.50 C ATOM 5345 O PRO 375 19.066 22.335 56.793 1.00 0.50 O ATOM 5346 CB PRO 375 16.348 20.523 57.542 1.00 0.50 C ATOM 5347 CG PRO 375 14.858 20.436 57.375 1.00 0.50 C ATOM 5348 CD PRO 375 14.636 20.580 55.885 1.00 0.50 C ATOM 5356 N ILE 376 18.384 20.917 55.184 1.00 0.50 N ATOM 5357 CA ILE 376 19.716 20.743 54.617 1.00 0.50 C ATOM 5358 C ILE 376 20.073 21.895 53.686 1.00 0.50 C ATOM 5359 O ILE 376 21.248 22.193 53.473 1.00 0.50 O ATOM 5360 CB ILE 376 19.825 19.406 53.847 1.00 0.50 C ATOM 5361 CG1 ILE 376 18.803 19.366 52.704 1.00 0.50 C ATOM 5362 CG2 ILE 376 19.625 18.220 54.793 1.00 0.50 C ATOM 5363 CD1 ILE 376 19.007 18.207 51.741 1.00 0.50 C ATOM 5375 N PHE 377 19.050 22.539 53.131 1.00 0.50 N ATOM 5376 CA PHE 377 19.248 23.737 52.324 1.00 0.50 C ATOM 5377 C PHE 377 19.225 24.992 53.187 1.00 0.50 C ATOM 5378 O PHE 377 19.738 26.039 52.791 1.00 0.50 O ATOM 5379 CB PHE 377 18.169 23.837 51.236 1.00 0.50 C ATOM 5380 CG PHE 377 18.224 22.720 50.225 1.00 0.50 C ATOM 5381 CD1 PHE 377 19.345 21.904 50.131 1.00 0.50 C ATOM 5382 CD2 PHE 377 17.152 22.490 49.369 1.00 0.50 C ATOM 5383 CE1 PHE 377 19.399 20.872 49.197 1.00 0.50 C ATOM 5384 CE2 PHE 377 17.196 21.461 48.432 1.00 0.50 C ATOM 5385 CZ PHE 377 18.323 20.652 48.348 1.00 0.50 C ATOM 5395 N GLN 378 18.628 24.881 54.369 1.00 0.50 N ATOM 5396 CA GLN 378 18.433 26.033 55.240 1.00 0.50 C ATOM 5397 C GLN 378 19.123 25.829 56.584 1.00 0.50 C ATOM 5398 O GLN 378 18.736 26.428 57.588 1.00 0.50 O ATOM 5399 CB GLN 378 16.940 26.295 55.457 1.00 0.50 C ATOM 5400 CG GLN 378 16.202 26.703 54.187 1.00 0.50 C ATOM 5401 CD GLN 378 14.738 27.016 54.436 1.00 0.50 C ATOM 5402 OE1 GLN 378 14.208 26.754 55.521 1.00 0.50 O ATOM 5403 NE2 GLN 378 14.068 27.575 53.433 1.00 0.50 N ATOM 5412 N TRP 379 20.144 24.980 56.596 1.00 0.50 N ATOM 5413 CA TRP 379 20.898 24.706 57.814 1.00 0.50 C ATOM 5414 C TRP 379 22.010 25.728 58.015 1.00 0.50 C ATOM 5415 O TRP 379 22.548 25.866 59.114 1.00 0.50 O ATOM 5416 CB TRP 379 21.491 23.292 57.769 1.00 0.50 C ATOM 5417 CG TRP 379 22.360 23.034 56.573 1.00 0.50 C ATOM 5418 CD1 TRP 379 21.975 22.485 55.380 1.00 0.50 C ATOM 5419 CD2 TRP 379 23.760 23.316 56.456 1.00 0.50 C ATOM 5420 NE1 TRP 379 23.052 22.408 54.530 1.00 0.50 N ATOM 5421 CE2 TRP 379 24.157 22.910 55.164 1.00 0.50 C ATOM 5422 CE3 TRP 379 24.712 23.872 57.319 1.00 0.50 C ATOM 5423 CZ2 TRP 379 25.473 23.043 54.712 1.00 0.50 C ATOM 5424 CZ3 TRP 379 26.020 24.004 56.869 1.00 0.50 C ATOM 5425 CH2 TRP 379 26.388 23.592 55.578 1.00 0.50 H ATOM 5436 N SER 380 22.351 26.442 56.947 1.00 0.50 N ATOM 5437 CA SER 380 23.287 27.556 57.038 1.00 0.50 C ATOM 5438 C SER 380 22.552 28.884 57.169 1.00 0.50 C ATOM 5439 O SER 380 23.174 29.941 57.270 1.00 0.50 O ATOM 5440 CB SER 380 24.199 27.587 55.807 1.00 0.50 C ATOM 5441 OG SER 380 23.430 27.735 54.625 1.00 0.50 O ATOM 5447 N GLU 381 21.225 28.822 57.164 1.00 0.50 N ATOM 5448 CA GLU 381 20.402 30.023 57.251 1.00 0.50 C ATOM 5449 C GLU 381 20.224 30.467 58.697 1.00 0.50 C ATOM 5450 O GLU 381 19.646 29.746 59.511 1.00 0.50 O ATOM 5451 CB GLU 381 19.032 29.779 56.611 1.00 0.50 C ATOM 5452 CG GLU 381 19.106 29.282 55.173 1.00 0.50 C ATOM 5453 CD GLU 381 17.743 29.051 54.546 1.00 0.50 C ATOM 5454 OE1 GLU 381 17.076 30.033 54.154 1.00 0.50 O ATOM 5455 OE2 GLU 381 17.331 27.869 54.454 1.00 0.50 O ATOM 5462 OXT GLU 381 20.658 31.559 59.075 1.00 0.50 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.62 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 78.06 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 80.75 44.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 120.51 0.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.88 57.7 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 76.35 56.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 81.22 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 74.91 56.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 74.68 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.29 68.2 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 47.78 81.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 61.92 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 68.40 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 10.19 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 28.89 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 24.38 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 36.99 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 28.89 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 8.34 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 8.34 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 8.34 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.52 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.52 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2747 CRMSCA SECONDARY STRUCTURE . . 7.91 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.60 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.04 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.50 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.97 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.65 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.66 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.24 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.46 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.20 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.60 120 100.0 120 CRMSSC BURIED . . . . . . . . 5.21 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.97 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.08 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.28 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.21 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.487 0.862 0.431 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.178 0.870 0.435 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.653 0.868 0.434 26 100.0 26 ERRCA BURIED . . . . . . . . 6.622 0.832 0.416 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.449 0.860 0.430 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.241 0.871 0.436 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.645 0.866 0.433 129 100.0 129 ERRMC BURIED . . . . . . . . 6.348 0.830 0.415 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.884 0.885 0.442 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 10.084 0.886 0.443 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.769 0.874 0.437 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.328 0.891 0.446 120 100.0 120 ERRSC BURIED . . . . . . . . 4.550 0.809 0.405 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.674 0.873 0.436 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 7.982 0.874 0.437 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.032 0.879 0.439 224 100.0 224 ERRALL BURIED . . . . . . . . 6.005 0.829 0.414 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 5 23 31 31 DISTCA CA (P) 0.00 0.00 6.45 16.13 74.19 31 DISTCA CA (RMS) 0.00 0.00 2.60 3.55 6.97 DISTCA ALL (N) 0 1 12 40 158 254 254 DISTALL ALL (P) 0.00 0.39 4.72 15.75 62.20 254 DISTALL ALL (RMS) 0.00 1.48 2.49 3.78 6.92 DISTALL END of the results output