####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 297), selected 31 , name T0537TS248_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS248_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 357 - 374 4.97 9.98 LCS_AVERAGE: 51.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 363 - 368 1.23 19.63 LONGEST_CONTINUOUS_SEGMENT: 6 371 - 376 1.90 17.72 LCS_AVERAGE: 15.92 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 363 - 367 0.58 20.86 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.78 19.28 LCS_AVERAGE: 12.49 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 12 0 3 3 4 4 5 6 7 8 9 10 13 17 18 20 22 22 23 24 25 LCS_GDT A 352 A 352 3 4 12 3 3 3 4 4 5 6 6 8 8 10 12 17 18 20 22 22 23 24 25 LCS_GDT E 353 E 353 3 4 16 3 3 4 4 5 6 6 8 10 12 14 15 17 18 20 22 22 23 24 25 LCS_GDT E 354 E 354 3 4 16 3 3 4 4 5 6 6 7 10 10 11 14 17 18 20 22 22 23 24 25 LCS_GDT L 355 L 355 3 4 16 3 3 4 4 5 6 6 8 10 10 11 14 17 18 20 22 22 23 24 25 LCS_GDT G 356 G 356 3 4 16 3 3 4 4 5 6 6 8 10 10 12 15 17 18 20 22 22 23 24 25 LCS_GDT N 357 N 357 3 4 18 3 3 4 4 5 6 6 8 10 10 13 15 17 18 20 22 22 23 24 25 LCS_GDT I 358 I 358 3 3 18 3 3 4 4 4 5 6 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT I 359 I 359 3 3 18 3 3 4 4 6 7 8 8 10 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT V 360 V 360 3 4 18 3 3 4 4 6 7 8 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT A 361 A 361 3 4 18 1 3 4 5 6 7 8 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT W 362 W 362 3 4 18 0 3 4 5 5 6 6 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT N 363 N 363 5 6 18 4 5 5 6 6 6 7 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT P 364 P 364 5 6 18 4 5 5 6 6 6 7 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT N 365 N 365 5 6 18 4 5 5 6 6 6 7 8 10 12 14 15 17 18 20 22 22 23 24 25 LCS_GDT L 366 L 366 5 6 18 4 5 5 6 6 6 7 8 9 12 14 15 17 18 20 22 22 23 24 25 LCS_GDT W 367 W 367 5 6 18 2 5 5 6 6 6 7 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT K 368 K 368 3 6 18 1 3 4 6 6 6 8 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT K 369 K 369 3 5 18 1 3 3 3 6 7 8 8 11 13 14 15 17 18 20 22 22 23 24 25 LCS_GDT G 370 G 370 4 5 18 4 4 4 4 4 5 7 8 11 13 14 15 17 17 19 21 21 23 24 25 LCS_GDT T 371 T 371 4 6 18 4 4 4 4 6 7 8 8 10 13 14 15 17 17 18 21 21 22 24 25 LCS_GDT N 372 N 372 5 6 18 4 4 5 5 5 7 8 8 11 13 14 15 17 17 19 21 21 22 24 25 LCS_GDT G 373 G 373 5 6 18 4 4 5 5 6 7 8 8 11 13 14 15 17 17 18 21 21 23 24 25 LCS_GDT Y 374 Y 374 5 6 18 3 4 5 5 6 6 7 7 8 10 11 14 17 17 18 19 21 22 23 25 LCS_GDT P 375 P 375 5 6 12 3 4 5 5 6 6 7 7 8 9 9 11 12 12 14 16 17 19 21 24 LCS_GDT I 376 I 376 5 6 12 3 4 5 5 6 6 7 7 8 9 9 11 12 12 13 16 17 19 21 24 LCS_GDT F 377 F 377 4 5 12 3 3 4 5 5 6 7 7 8 9 9 11 12 12 14 21 22 23 24 25 LCS_GDT Q 378 Q 378 4 5 12 3 3 4 5 6 6 7 7 8 9 9 11 12 13 14 16 19 20 24 24 LCS_GDT W 379 W 379 4 5 12 3 3 4 4 5 5 6 7 8 10 11 12 17 18 20 22 22 23 24 25 LCS_GDT S 380 S 380 4 5 12 3 3 4 5 5 6 7 8 10 12 14 15 17 18 20 22 22 23 24 25 LCS_GDT E 381 E 381 4 5 12 3 3 4 5 5 6 7 7 8 10 11 13 17 18 20 22 22 23 24 25 LCS_AVERAGE LCS_A: 26.67 ( 12.49 15.92 51.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 6 7 8 8 11 13 14 15 17 18 20 22 22 23 24 25 GDT PERCENT_AT 12.90 16.13 16.13 19.35 19.35 22.58 25.81 25.81 35.48 41.94 45.16 48.39 54.84 58.06 64.52 70.97 70.97 74.19 77.42 80.65 GDT RMS_LOCAL 0.19 0.58 0.58 1.23 1.23 2.19 2.42 2.42 3.42 3.71 3.89 4.14 4.69 5.06 5.45 5.73 5.73 5.95 6.14 6.60 GDT RMS_ALL_AT 21.53 20.86 20.86 19.63 19.63 11.16 10.83 10.83 10.51 10.43 10.20 10.20 9.95 8.32 8.48 8.62 8.62 8.52 8.61 8.13 # Checking swapping # possible swapping detected: E 353 E 353 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 17.173 0 0.176 0.686 19.692 0.000 0.000 LGA A 352 A 352 16.137 0 0.314 0.332 16.576 0.000 0.000 LGA E 353 E 353 15.317 0 0.594 0.996 17.523 0.000 0.000 LGA E 354 E 354 15.260 0 0.169 0.922 16.395 0.000 0.000 LGA L 355 L 355 12.606 0 0.612 1.385 13.301 0.000 0.000 LGA G 356 G 356 12.701 0 0.492 0.492 13.128 0.000 0.000 LGA N 357 N 357 11.361 0 0.146 1.107 15.701 0.476 0.238 LGA I 358 I 358 5.983 0 0.541 0.586 8.507 28.810 20.714 LGA I 359 I 359 2.491 0 0.568 1.511 8.843 61.071 38.512 LGA V 360 V 360 2.097 0 0.606 0.603 4.332 69.286 59.184 LGA A 361 A 361 2.245 0 0.683 0.636 5.433 50.238 50.190 LGA W 362 W 362 8.262 0 0.535 1.050 16.890 6.905 2.075 LGA N 363 N 363 9.835 0 0.559 1.048 13.061 2.738 1.369 LGA P 364 P 364 5.898 0 0.041 0.118 7.635 19.405 15.578 LGA N 365 N 365 8.293 0 0.143 1.386 12.876 4.643 2.381 LGA L 366 L 366 11.369 0 0.052 1.007 16.868 0.119 0.060 LGA W 367 W 367 8.620 0 0.576 1.291 18.574 6.548 1.973 LGA K 368 K 368 3.335 0 0.604 1.185 4.716 43.690 51.746 LGA K 369 K 369 2.379 0 0.592 1.169 4.617 52.738 55.608 LGA G 370 G 370 5.017 0 0.616 0.616 5.017 44.167 44.167 LGA T 371 T 371 1.697 0 0.103 1.104 4.721 64.881 56.871 LGA N 372 N 372 2.947 0 0.273 0.653 5.701 65.000 47.679 LGA G 373 G 373 1.746 0 0.702 0.702 6.350 52.976 52.976 LGA Y 374 Y 374 8.466 0 0.138 1.217 13.989 7.381 2.540 LGA P 375 P 375 13.862 0 0.093 0.260 16.260 0.000 0.000 LGA I 376 I 376 15.904 0 0.418 0.526 16.579 0.000 0.000 LGA F 377 F 377 15.480 0 0.571 1.297 16.384 0.000 0.000 LGA Q 378 Q 378 17.396 0 0.248 1.351 23.887 0.000 0.000 LGA W 379 W 379 17.282 0 0.253 1.647 21.845 0.000 0.000 LGA S 380 S 380 10.251 0 0.066 0.718 12.590 0.000 1.667 LGA E 381 E 381 10.991 1 0.615 1.245 13.851 1.190 0.476 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 7.897 7.783 9.498 18.783 16.323 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 8 2.42 33.065 28.131 0.317 LGA_LOCAL RMSD: 2.425 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.830 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.897 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.629749 * X + 0.755900 * Y + 0.178970 * Z + -32.380333 Y_new = -0.719319 * X + -0.480486 * Y + -0.501711 * Z + 52.978798 Z_new = -0.293251 * X + -0.444689 * Y + 0.846319 * Z + 45.967304 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.289898 0.297625 -0.483791 [DEG: -131.2015 17.0527 -27.7192 ] ZXZ: 0.342649 0.561760 -2.558602 [DEG: 19.6323 32.1865 -146.5971 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS248_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS248_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 8 2.42 28.131 7.90 REMARK ---------------------------------------------------------- MOLECULE T0537TS248_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2991 N SER 351 13.313 0.490 41.063 1.00 1.00 N ATOM 2992 CA SER 351 13.695 1.784 41.528 1.00 1.00 C ATOM 2993 C SER 351 12.619 2.821 41.223 1.00 1.00 C ATOM 2994 O SER 351 12.320 3.094 40.060 1.00 1.00 O ATOM 2995 H SER 351 13.960 0.015 40.449 1.00 1.00 H ATOM 2996 CB SER 351 15.019 2.195 40.903 1.00 1.00 C ATOM 2997 OG SER 351 16.091 1.432 41.429 1.00 1.00 O ATOM 2998 N ALA 352 12.041 3.393 42.273 1.00 1.00 N ATOM 2999 CA ALA 352 10.997 4.399 42.119 1.00 1.00 C ATOM 3000 C ALA 352 11.595 5.792 41.947 1.00 1.00 C ATOM 3001 O ALA 352 12.117 6.128 40.885 1.00 1.00 O ATOM 3002 H ALA 352 12.286 3.168 43.227 1.00 1.00 H ATOM 3003 CB ALA 352 10.059 4.368 43.316 1.00 1.00 C ATOM 3004 N GLU 353 11.514 6.599 43.000 1.00 1.00 N ATOM 3005 CA GLU 353 12.046 7.956 42.969 1.00 1.00 C ATOM 3006 C GLU 353 12.637 8.284 41.602 1.00 1.00 C ATOM 3007 O GLU 353 13.354 7.475 41.014 1.00 1.00 O ATOM 3008 H GLU 353 11.085 6.323 43.873 1.00 1.00 H ATOM 3009 CB GLU 353 13.095 8.132 44.056 1.00 1.00 C ATOM 3010 CG GLU 353 12.541 8.056 45.470 1.00 1.00 C ATOM 3011 CD GLU 353 13.632 8.024 46.521 1.00 1.00 C ATOM 3012 OE1 GLU 353 14.736 7.524 46.217 1.00 1.00 O ATOM 3013 OE2 GLU 353 13.385 8.499 47.650 1.00 1.00 O ATOM 3014 N GLU 354 12.331 9.476 41.102 1.00 1.00 N ATOM 3015 CA GLU 354 12.830 9.915 39.804 1.00 1.00 C ATOM 3016 C GLU 354 14.229 10.511 39.924 1.00 1.00 C ATOM 3017 O GLU 354 15.218 9.875 39.559 1.00 1.00 O ATOM 3018 H GLU 354 11.742 10.141 41.584 1.00 1.00 H ATOM 3019 CB GLU 354 11.875 10.925 39.189 1.00 1.00 C ATOM 3020 CG GLU 354 10.453 10.414 39.023 1.00 1.00 C ATOM 3021 CD GLU 354 10.319 9.427 37.880 1.00 1.00 C ATOM 3022 OE1 GLU 354 11.259 9.332 37.064 1.00 1.00 O ATOM 3023 OE2 GLU 354 9.274 8.748 37.801 1.00 1.00 O ATOM 3024 N LEU 355 14.304 11.734 40.439 1.00 1.00 N ATOM 3025 CA LEU 355 15.580 12.418 40.607 1.00 1.00 C ATOM 3026 C LEU 355 15.611 13.213 41.908 1.00 1.00 C ATOM 3027 O LEU 355 14.579 13.680 42.387 1.00 1.00 O ATOM 3028 H LEU 355 13.491 12.255 40.738 1.00 1.00 H ATOM 3029 CB LEU 355 15.847 13.332 39.421 1.00 1.00 C ATOM 3030 CG LEU 355 17.080 14.231 39.520 1.00 1.00 C ATOM 3031 CD1 LEU 355 18.349 13.395 39.594 1.00 1.00 C ATOM 3032 CD2 LEU 355 17.147 15.185 38.339 1.00 1.00 C ATOM 3033 N GLY 356 16.804 13.363 42.476 1.00 1.00 N ATOM 3034 CA GLY 356 16.973 14.102 43.721 1.00 1.00 C ATOM 3035 C GLY 356 16.076 13.542 44.819 1.00 1.00 C ATOM 3036 O GLY 356 15.215 14.245 45.349 1.00 1.00 O ATOM 3037 H GLY 356 17.652 12.980 42.082 1.00 1.00 H ATOM 3038 N ASN 357 16.283 12.274 45.156 1.00 1.00 N ATOM 3039 CA ASN 357 15.494 11.618 46.193 1.00 1.00 C ATOM 3040 C ASN 357 15.175 12.577 47.334 1.00 1.00 C ATOM 3041 O ASN 357 14.048 13.056 47.460 1.00 1.00 O ATOM 3042 H ASN 357 16.988 11.697 44.722 1.00 1.00 H ATOM 3043 CB ASN 357 16.230 10.395 46.717 1.00 1.00 C ATOM 3044 CG ASN 357 16.426 9.332 45.653 1.00 1.00 C ATOM 3045 OD1 ASN 357 17.488 8.675 45.659 1.00 1.00 O ATOM 3046 ND2 ASN 357 15.437 9.180 44.781 1.00 1.00 N ATOM 3047 HD21 ASN 357 14.635 9.740 44.848 1.00 1.00 H ATOM 3048 HD22 ASN 357 15.508 8.509 44.071 1.00 1.00 H ATOM 3049 N ILE 358 16.176 12.854 48.165 1.00 1.00 N ATOM 3050 CA ILE 358 16.005 13.756 49.297 1.00 1.00 C ATOM 3051 C ILE 358 15.812 12.980 50.596 1.00 1.00 C ATOM 3052 O ILE 358 14.696 12.867 51.103 1.00 1.00 O ATOM 3053 H ILE 358 17.101 12.461 48.061 1.00 1.00 H ATOM 3054 CB ILE 358 14.826 14.684 49.053 1.00 1.00 C ATOM 3055 CG1 ILE 358 15.014 15.453 47.744 1.00 1.00 C ATOM 3056 CG2 ILE 358 14.642 15.632 50.228 1.00 1.00 C ATOM 3057 CD1 ILE 358 13.786 16.221 47.306 1.00 1.00 C ATOM 3058 N ILE 359 16.906 12.447 51.129 1.00 1.00 N ATOM 3059 CA ILE 359 16.859 11.681 52.369 1.00 1.00 C ATOM 3060 C ILE 359 17.833 12.239 53.400 1.00 1.00 C ATOM 3061 O ILE 359 19.011 11.878 53.415 1.00 1.00 O ATOM 3062 H ILE 359 17.822 12.538 50.714 1.00 1.00 H ATOM 3063 CB ILE 359 17.162 10.216 52.091 1.00 1.00 C ATOM 3064 CG1 ILE 359 18.516 10.075 51.394 1.00 1.00 C ATOM 3065 CG2 ILE 359 16.049 9.589 51.267 1.00 1.00 C ATOM 3066 CD1 ILE 359 18.995 8.645 51.273 1.00 1.00 C ATOM 3067 N VAL 360 17.336 13.122 54.260 1.00 1.00 N ATOM 3068 CA VAL 360 18.161 13.732 55.296 1.00 1.00 C ATOM 3069 C VAL 360 18.000 13.008 56.628 1.00 1.00 C ATOM 3070 O VAL 360 16.992 12.341 56.864 1.00 1.00 O ATOM 3071 H VAL 360 16.370 13.418 54.248 1.00 1.00 H ATOM 3072 CB VAL 360 17.809 15.203 55.446 1.00 1.00 C ATOM 3073 CG1 VAL 360 18.583 15.821 56.601 1.00 1.00 C ATOM 3074 CG2 VAL 360 18.090 15.953 54.152 1.00 1.00 C ATOM 3075 N ALA 361 18.997 13.144 57.495 1.00 1.00 N ATOM 3076 CA ALA 361 18.967 12.503 58.805 1.00 1.00 C ATOM 3077 C ALA 361 19.399 13.471 59.901 1.00 1.00 C ATOM 3078 O ALA 361 20.012 14.502 59.627 1.00 1.00 O ATOM 3079 H ALA 361 19.824 13.691 57.301 1.00 1.00 H ATOM 3080 CB ALA 361 19.858 11.270 58.804 1.00 1.00 C ATOM 3081 N TRP 362 19.074 13.131 61.145 1.00 1.00 N ATOM 3082 CA TRP 362 19.435 13.635 62.478 1.00 1.00 C ATOM 3083 C TRP 362 18.437 14.481 63.261 1.00 1.00 C ATOM 3084 O TRP 362 17.301 14.668 62.829 1.00 1.00 O ATOM 3085 H TRP 362 18.570 12.285 61.369 1.00 1.00 H ATOM 3086 CB TRP 362 20.672 14.675 62.492 1.00 1.00 C ATOM 3087 CG TRP 362 22.003 14.028 62.265 1.00 1.00 C ATOM 3088 CD1 TRP 362 22.701 13.979 61.092 1.00 1.00 C ATOM 3089 CD2 TRP 362 22.798 13.336 63.235 1.00 1.00 C ATOM 3090 NE1 TRP 362 23.882 13.300 61.272 1.00 1.00 N ATOM 3091 CE2 TRP 362 23.965 12.894 62.580 1.00 1.00 C ATOM 3092 CE3 TRP 362 22.635 13.047 64.594 1.00 1.00 C ATOM 3093 CZ2 TRP 362 24.964 12.179 63.238 1.00 1.00 C ATOM 3094 CZ3 TRP 362 23.628 12.338 65.243 1.00 1.00 C ATOM 3095 CH2 TRP 362 24.832 11.879 64.579 1.00 1.00 H ATOM 3096 HH2 TRP 362 24.497 13.179 60.518 1.00 1.00 H ATOM 3097 N ASN 363 18.838 14.907 64.465 1.00 1.00 N ATOM 3098 CA ASN 363 17.953 15.702 65.248 1.00 1.00 C ATOM 3099 C ASN 363 17.659 16.900 64.390 1.00 1.00 C ATOM 3100 O ASN 363 16.517 17.356 64.344 1.00 1.00 O ATOM 3101 H ASN 363 19.766 14.742 64.826 1.00 1.00 H ATOM 3102 CB ASN 363 18.593 16.197 66.562 1.00 1.00 C ATOM 3103 CG ASN 363 19.111 14.996 67.343 1.00 1.00 C ATOM 3104 OD1 ASN 363 18.853 13.843 66.999 1.00 1.00 O ATOM 3105 ND2 ASN 363 19.878 15.276 68.430 1.00 1.00 N ATOM 3106 HD21 ASN 363 19.305 15.105 67.616 1.00 1.00 H ATOM 3107 HD22 ASN 363 19.312 15.032 67.630 1.00 1.00 H ATOM 3108 N PRO 364 18.642 17.431 63.693 1.00 1.00 N ATOM 3109 CA PRO 364 18.353 18.567 62.862 1.00 1.00 C ATOM 3110 C PRO 364 17.496 18.320 61.656 1.00 1.00 C ATOM 3111 O PRO 364 16.926 19.289 61.167 1.00 1.00 O ATOM 3112 H PRO 364 18.642 17.431 63.693 1.00 1.00 H ATOM 3113 CB PRO 364 19.691 19.224 62.536 1.00 1.00 C ATOM 3114 CG PRO 364 20.553 18.886 63.758 1.00 1.00 C ATOM 3115 CD PRO 364 19.988 17.547 64.252 1.00 1.00 C ATOM 3116 N ASN 365 17.384 17.092 61.113 1.00 1.00 N ATOM 3117 CA ASN 365 16.533 16.993 59.962 1.00 1.00 C ATOM 3118 C ASN 365 15.164 17.302 60.466 1.00 1.00 C ATOM 3119 O ASN 365 14.336 17.913 59.788 1.00 1.00 O ATOM 3120 H ASN 365 17.862 16.282 61.480 1.00 1.00 H ATOM 3121 CB ASN 365 16.500 15.589 59.336 1.00 1.00 C ATOM 3122 CG ASN 365 15.875 15.720 57.953 1.00 1.00 C ATOM 3123 OD1 ASN 365 15.748 14.736 57.226 1.00 1.00 O ATOM 3124 ND2 ASN 365 15.489 16.968 57.573 1.00 1.00 N ATOM 3125 HD21 ASN 365 15.787 16.056 57.887 1.00 1.00 H ATOM 3126 HD22 ASN 365 15.764 16.029 57.823 1.00 1.00 H ATOM 3127 N LEU 366 14.911 16.862 61.710 1.00 1.00 N ATOM 3128 CA LEU 366 13.677 17.081 62.391 1.00 1.00 C ATOM 3129 C LEU 366 13.530 18.563 62.548 1.00 1.00 C ATOM 3130 O LEU 366 12.451 19.121 62.355 1.00 1.00 O ATOM 3131 H LEU 366 15.591 16.361 62.264 1.00 1.00 H ATOM 3132 CB LEU 366 13.720 16.457 63.804 1.00 1.00 C ATOM 3133 CG LEU 366 12.401 16.445 64.603 1.00 1.00 C ATOM 3134 CD1 LEU 366 11.866 17.858 64.877 1.00 1.00 C ATOM 3135 CD2 LEU 366 11.365 15.506 63.965 1.00 1.00 C ATOM 3136 N TRP 367 14.627 19.251 62.911 1.00 1.00 N ATOM 3137 CA TRP 367 14.527 20.665 63.123 1.00 1.00 C ATOM 3138 C TRP 367 14.254 21.362 61.825 1.00 1.00 C ATOM 3139 O TRP 367 13.385 22.230 61.750 1.00 1.00 O ATOM 3140 H TRP 367 15.521 18.813 63.076 1.00 1.00 H ATOM 3141 CB TRP 367 15.799 21.290 63.707 1.00 1.00 C ATOM 3142 CG TRP 367 15.535 22.689 64.192 1.00 1.00 C ATOM 3143 CD1 TRP 367 15.644 23.889 63.555 1.00 1.00 C ATOM 3144 CD2 TRP 367 15.048 22.966 65.512 1.00 1.00 C ATOM 3145 NE1 TRP 367 15.247 24.902 64.396 1.00 1.00 N ATOM 3146 CE2 TRP 367 14.879 24.346 65.605 1.00 1.00 C ATOM 3147 CE3 TRP 367 14.762 22.135 66.556 1.00 1.00 C ATOM 3148 CZ2 TRP 367 14.415 24.919 66.755 1.00 1.00 C ATOM 3149 CZ3 TRP 367 14.300 22.715 67.715 1.00 1.00 C ATOM 3150 CH2 TRP 367 14.130 24.081 67.811 1.00 1.00 H ATOM 3151 HH2 TRP 367 15.545 24.183 63.752 1.00 1.00 H ATOM 3152 N LYS 368 14.992 20.982 60.761 1.00 1.00 N ATOM 3153 CA LYS 368 14.890 21.622 59.481 1.00 1.00 C ATOM 3154 C LYS 368 13.518 21.477 58.941 1.00 1.00 C ATOM 3155 O LYS 368 12.984 22.427 58.374 1.00 1.00 O ATOM 3156 H LYS 368 15.700 20.264 60.810 1.00 1.00 H ATOM 3157 CB LYS 368 15.837 21.069 58.400 1.00 1.00 C ATOM 3158 CG LYS 368 17.138 21.858 58.249 1.00 1.00 C ATOM 3159 CD LYS 368 18.081 21.790 59.445 1.00 1.00 C ATOM 3160 CE LYS 368 19.220 22.808 59.348 1.00 1.00 C ATOM 3161 NZ LYS 368 19.802 22.790 57.986 1.00 1.00 N ATOM 3162 N LYS 369 12.905 20.292 59.096 1.00 1.00 N ATOM 3163 CA LYS 369 11.597 20.143 58.540 1.00 1.00 C ATOM 3164 C LYS 369 10.706 21.146 59.193 1.00 1.00 C ATOM 3165 O LYS 369 9.941 21.842 58.528 1.00 1.00 O ATOM 3166 H LYS 369 13.337 19.506 59.561 1.00 1.00 H ATOM 3167 CB LYS 369 10.976 18.758 58.796 1.00 1.00 C ATOM 3168 CG LYS 369 10.786 18.474 60.285 1.00 1.00 C ATOM 3169 CD LYS 369 9.831 17.331 60.620 1.00 1.00 C ATOM 3170 CE LYS 369 9.701 17.100 62.126 1.00 1.00 C ATOM 3171 NZ LYS 369 9.531 18.395 62.824 1.00 1.00 N ATOM 3172 N GLY 370 10.820 21.289 60.523 1.00 1.00 N ATOM 3173 CA GLY 370 9.945 22.196 61.198 1.00 1.00 C ATOM 3174 C GLY 370 10.176 23.569 60.653 1.00 1.00 C ATOM 3175 O GLY 370 9.242 24.354 60.491 1.00 1.00 O ATOM 3176 H GLY 370 11.471 20.755 61.080 1.00 1.00 H ATOM 3177 N THR 371 11.446 23.920 60.397 1.00 1.00 N ATOM 3178 CA THR 371 11.736 25.233 59.907 1.00 1.00 C ATOM 3179 C THR 371 11.208 25.448 58.510 1.00 1.00 C ATOM 3180 O THR 371 10.542 26.450 58.256 1.00 1.00 O ATOM 3181 H THR 371 12.230 23.304 60.557 1.00 1.00 H ATOM 3182 CB THR 371 13.209 25.509 59.878 1.00 1.00 C ATOM 3183 OG1 THR 371 13.754 25.363 61.182 1.00 1.00 O ATOM 3184 CG2 THR 371 13.435 26.944 59.374 1.00 1.00 C ATOM 3185 N ASN 372 11.511 24.524 57.569 1.00 1.00 N ATOM 3186 CA ASN 372 11.193 24.706 56.171 1.00 1.00 C ATOM 3187 C ASN 372 9.748 24.482 55.804 1.00 1.00 C ATOM 3188 O ASN 372 9.198 25.223 54.992 1.00 1.00 O ATOM 3189 H ASN 372 12.069 23.705 57.762 1.00 1.00 H ATOM 3190 CB ASN 372 12.016 23.817 55.219 1.00 1.00 C ATOM 3191 CG ASN 372 11.523 22.381 55.313 1.00 1.00 C ATOM 3192 OD1 ASN 372 11.804 21.655 56.264 1.00 1.00 O ATOM 3193 ND2 ASN 372 10.755 21.951 54.275 1.00 1.00 N ATOM 3194 HD21 ASN 372 11.328 22.303 55.029 1.00 1.00 H ATOM 3195 HD22 ASN 372 11.322 22.237 55.061 1.00 1.00 H ATOM 3196 N GLY 373 9.085 23.459 56.379 1.00 1.00 N ATOM 3197 CA GLY 373 7.766 23.101 55.912 1.00 1.00 C ATOM 3198 C GLY 373 6.792 24.177 56.252 1.00 1.00 C ATOM 3199 O GLY 373 7.086 24.982 57.131 1.00 1.00 O ATOM 3200 H GLY 373 9.511 22.833 57.047 1.00 1.00 H ATOM 3201 N TYR 374 5.619 24.203 55.553 1.00 1.00 N ATOM 3202 CA TYR 374 4.579 25.180 55.809 1.00 1.00 C ATOM 3203 C TYR 374 4.704 26.347 54.873 1.00 1.00 C ATOM 3204 O TYR 374 5.765 26.647 54.331 1.00 1.00 O ATOM 3205 H TYR 374 5.394 23.534 54.830 1.00 1.00 H ATOM 3206 CB TYR 374 4.470 25.600 57.305 1.00 1.00 C ATOM 3207 CG TYR 374 3.739 26.868 57.603 1.00 1.00 C ATOM 3208 CD1 TYR 374 2.366 26.956 57.587 1.00 1.00 C ATOM 3209 CD2 TYR 374 4.464 27.978 57.974 1.00 1.00 C ATOM 3210 CE1 TYR 374 1.736 28.144 57.887 1.00 1.00 C ATOM 3211 CE2 TYR 374 3.843 29.166 58.276 1.00 1.00 C ATOM 3212 CZ TYR 374 2.474 29.253 58.228 1.00 1.00 C ATOM 3213 OH TYR 374 1.831 30.470 58.537 1.00 1.00 H ATOM 3214 N PRO 375 3.573 26.942 54.606 1.00 1.00 N ATOM 3215 CA PRO 375 3.465 28.080 53.742 1.00 1.00 C ATOM 3216 C PRO 375 4.055 29.287 54.369 1.00 1.00 C ATOM 3217 O PRO 375 4.308 29.276 55.572 1.00 1.00 O ATOM 3218 H PRO 375 3.573 26.942 54.606 1.00 1.00 H ATOM 3219 CB PRO 375 1.990 28.193 53.356 1.00 1.00 C ATOM 3220 CG PRO 375 1.260 27.241 54.314 1.00 1.00 C ATOM 3221 CD PRO 375 2.339 26.207 54.662 1.00 1.00 C ATOM 3222 N ILE 376 4.259 30.332 53.551 1.00 1.00 N ATOM 3223 CA ILE 376 4.971 31.522 53.890 1.00 1.00 C ATOM 3224 C ILE 376 6.119 31.157 54.764 1.00 1.00 C ATOM 3225 O ILE 376 6.091 31.278 55.988 1.00 1.00 O ATOM 3226 H ILE 376 4.031 30.313 52.567 1.00 1.00 H ATOM 3227 CB ILE 376 4.112 32.563 54.559 1.00 1.00 C ATOM 3228 CG1 ILE 376 3.465 32.028 55.849 1.00 1.00 C ATOM 3229 CG2 ILE 376 3.104 33.065 53.517 1.00 1.00 C ATOM 3230 CD1 ILE 376 2.852 33.124 56.721 1.00 1.00 C ATOM 3231 N PHE 377 7.197 30.718 54.098 1.00 1.00 N ATOM 3232 CA PHE 377 8.439 30.448 54.741 1.00 1.00 C ATOM 3233 C PHE 377 9.411 30.717 53.646 1.00 1.00 C ATOM 3234 O PHE 377 10.568 30.303 53.678 1.00 1.00 O ATOM 3235 H PHE 377 7.228 30.641 53.091 1.00 1.00 H ATOM 3236 CB PHE 377 8.608 28.982 55.181 1.00 1.00 C ATOM 3237 CG PHE 377 9.722 28.969 56.173 1.00 1.00 C ATOM 3238 CD1 PHE 377 9.465 29.295 57.485 1.00 1.00 C ATOM 3239 CD2 PHE 377 11.007 28.640 55.807 1.00 1.00 C ATOM 3240 CE1 PHE 377 10.471 29.294 58.420 1.00 1.00 C ATOM 3241 CE2 PHE 377 12.018 28.639 56.738 1.00 1.00 C ATOM 3242 CZ PHE 377 11.752 28.969 58.045 1.00 1.00 C ATOM 3243 N GLN 378 8.927 31.462 52.634 1.00 1.00 N ATOM 3244 CA GLN 378 9.693 31.755 51.463 1.00 1.00 C ATOM 3245 C GLN 378 10.029 30.454 50.821 1.00 1.00 C ATOM 3246 O GLN 378 10.956 30.374 50.015 1.00 1.00 O ATOM 3247 H GLN 378 7.980 31.813 52.613 1.00 1.00 H ATOM 3248 CB GLN 378 11.001 32.515 51.755 1.00 1.00 C ATOM 3249 CG GLN 378 10.791 33.980 52.145 1.00 1.00 C ATOM 3250 CD GLN 378 10.457 34.757 50.877 1.00 1.00 C ATOM 3251 OE1 GLN 378 9.603 35.641 50.873 1.00 1.00 O ATOM 3252 NE2 GLN 378 11.162 34.420 49.764 1.00 1.00 N ATOM 3253 HE21 GLN 378 10.658 34.644 50.609 1.00 1.00 H ATOM 3254 HE22 GLN 378 10.620 34.695 50.571 1.00 1.00 H ATOM 3255 N TRP 379 9.236 29.412 51.149 1.00 1.00 N ATOM 3256 CA TRP 379 9.399 28.096 50.606 1.00 1.00 C ATOM 3257 C TRP 379 10.839 27.719 50.641 1.00 1.00 C ATOM 3258 O TRP 379 11.404 27.260 49.648 1.00 1.00 O ATOM 3259 H TRP 379 8.458 29.493 51.788 1.00 1.00 H ATOM 3260 CB TRP 379 8.768 27.926 49.210 1.00 1.00 C ATOM 3261 CG TRP 379 9.057 29.049 48.249 1.00 1.00 C ATOM 3262 CD1 TRP 379 9.900 29.109 47.179 1.00 1.00 C ATOM 3263 CD2 TRP 379 8.434 30.337 48.352 1.00 1.00 C ATOM 3264 NE1 TRP 379 9.835 30.356 46.604 1.00 1.00 N ATOM 3265 CE2 TRP 379 8.937 31.123 47.319 1.00 1.00 C ATOM 3266 CE3 TRP 379 7.519 30.824 49.241 1.00 1.00 C ATOM 3267 CZ2 TRP 379 8.532 32.417 47.158 1.00 1.00 C ATOM 3268 CZ3 TRP 379 7.110 32.128 49.075 1.00 1.00 C ATOM 3269 CH2 TRP 379 7.606 32.908 48.053 1.00 1.00 H ATOM 3270 HH2 TRP 379 9.907 29.431 47.001 1.00 1.00 H ATOM 3271 N SER 380 11.470 27.903 51.816 1.00 1.00 N ATOM 3272 CA SER 380 12.856 27.580 51.924 1.00 1.00 C ATOM 3273 C SER 380 12.977 26.100 51.882 1.00 1.00 C ATOM 3274 O SER 380 12.057 25.362 52.235 1.00 1.00 O ATOM 3275 H SER 380 11.010 28.273 52.635 1.00 1.00 H ATOM 3276 CB SER 380 13.544 28.088 53.204 1.00 1.00 C ATOM 3277 OG SER 380 13.037 27.413 54.345 1.00 1.00 O ATOM 3278 N GLU 381 14.148 25.646 51.415 1.00 1.00 N ATOM 3279 CA GLU 381 14.440 24.261 51.246 1.00 1.00 C ATOM 3280 C GLU 381 15.562 23.945 52.225 1.00 1.00 C ATOM 3281 O GLU 381 16.034 22.778 52.236 1.00 1.00 O ATOM 3282 H GLU 381 14.894 26.256 51.113 1.00 1.00 H ATOM 3283 CB GLU 381 14.925 24.011 49.812 1.00 1.00 C ATOM 3284 CG GLU 381 16.100 24.920 49.445 1.00 1.00 C ATOM 3285 CD GLU 381 16.062 25.180 47.944 1.00 1.00 C ATOM 3286 OE1 GLU 381 15.095 24.711 47.286 1.00 1.00 O ATOM 3287 OE2 GLU 381 16.988 25.868 47.439 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 103.02 33.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 112.79 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.23 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 102.00 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.88 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 93.70 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 69.86 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 93.86 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 75.03 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.56 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 86.56 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 99.27 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 99.21 30.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 44.82 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.19 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 30.52 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 14.00 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 51.19 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 134.46 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 134.46 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 134.46 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.90 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.90 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2547 CRMSCA SECONDARY STRUCTURE . . 6.46 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.89 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.93 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.97 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.52 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.95 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.10 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.97 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.03 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.73 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.07 119 99.2 120 CRMSSC BURIED . . . . . . . . 9.69 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.54 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.65 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.67 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.53 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.392 0.727 0.363 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.050 0.677 0.338 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.409 0.728 0.364 26 100.0 26 ERRCA BURIED . . . . . . . . 6.303 0.718 0.359 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.405 0.721 0.360 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.101 0.678 0.339 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.422 0.724 0.362 129 100.0 129 ERRMC BURIED . . . . . . . . 6.307 0.704 0.352 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.273 0.795 0.397 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 9.346 0.795 0.398 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 7.226 0.761 0.381 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.394 0.798 0.399 119 99.2 120 ERRSC BURIED . . . . . . . . 7.832 0.759 0.379 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.789 0.756 0.378 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 6.092 0.715 0.358 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.933 0.761 0.380 223 99.6 224 ERRALL BURIED . . . . . . . . 6.719 0.720 0.360 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 9 24 31 31 DISTCA CA (P) 0.00 0.00 3.23 29.03 77.42 31 DISTCA CA (RMS) 0.00 0.00 2.27 3.94 6.70 DISTCA ALL (N) 1 3 12 44 168 253 254 DISTALL ALL (P) 0.39 1.18 4.72 17.32 66.14 254 DISTALL ALL (RMS) 0.91 1.45 2.23 3.79 7.04 DISTALL END of the results output