####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS244_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS244_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 362 - 378 4.92 16.05 LCS_AVERAGE: 47.14 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 365 - 370 1.57 18.50 LCS_AVERAGE: 14.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.73 16.79 LONGEST_CONTINUOUS_SEGMENT: 4 367 - 370 0.34 16.99 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.41 14.84 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 0.38 12.63 LCS_AVERAGE: 11.34 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 11 0 3 3 3 3 3 5 5 6 8 9 10 11 15 16 16 17 19 21 23 LCS_GDT A 352 A 352 3 3 11 3 3 4 4 7 7 7 7 10 11 12 14 15 16 16 18 20 21 22 23 LCS_GDT E 353 E 353 3 4 11 3 3 3 4 7 7 7 7 10 11 12 14 15 16 16 18 20 21 22 23 LCS_GDT E 354 E 354 3 4 11 3 4 4 4 7 7 7 7 10 11 12 14 15 16 16 18 20 21 22 23 LCS_GDT L 355 L 355 3 4 12 3 3 4 4 4 5 6 6 8 11 11 14 14 16 16 18 20 21 22 23 LCS_GDT G 356 G 356 3 4 12 3 3 4 4 4 5 6 6 8 10 11 12 14 16 16 18 20 21 22 23 LCS_GDT N 357 N 357 3 4 12 3 3 3 4 4 5 6 6 8 10 10 10 12 14 15 18 20 21 22 23 LCS_GDT I 358 I 358 3 4 12 3 3 3 4 4 5 6 6 7 10 11 12 13 16 16 18 19 21 22 23 LCS_GDT I 359 I 359 3 4 12 3 3 3 4 4 5 6 6 8 10 10 10 11 12 13 15 15 17 18 19 LCS_GDT V 360 V 360 3 4 12 3 3 4 4 4 5 5 6 8 10 10 12 12 16 16 18 20 21 22 23 LCS_GDT A 361 A 361 3 4 12 0 3 3 4 7 7 7 7 10 11 12 14 15 16 16 18 20 21 22 23 LCS_GDT W 362 W 362 4 4 17 3 4 5 5 7 7 7 8 10 11 12 14 16 17 19 19 20 21 22 23 LCS_GDT N 363 N 363 4 4 17 3 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT P 364 P 364 4 4 17 3 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT N 365 N 365 4 6 17 3 4 5 5 6 6 7 8 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT L 366 L 366 3 6 17 3 4 4 4 6 6 7 8 9 12 13 15 15 16 19 19 20 21 22 23 LCS_GDT W 367 W 367 4 6 17 4 4 4 5 6 6 7 8 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT K 368 K 368 4 6 17 4 4 4 5 6 6 7 8 11 12 13 15 16 17 19 19 20 21 21 22 LCS_GDT K 369 K 369 4 6 17 4 4 4 5 6 6 7 8 11 12 13 15 16 17 19 19 20 21 21 21 LCS_GDT G 370 G 370 4 6 17 4 4 4 5 6 6 7 8 9 12 13 15 15 16 19 19 20 21 21 21 LCS_GDT T 371 T 371 3 4 17 3 3 3 4 6 6 9 9 11 12 13 15 16 17 19 19 20 21 21 22 LCS_GDT N 372 N 372 3 5 17 3 3 3 4 5 6 9 9 11 12 13 15 16 17 19 19 20 21 21 22 LCS_GDT G 373 G 373 4 5 17 3 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 21 22 LCS_GDT Y 374 Y 374 4 5 17 3 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 21 22 LCS_GDT P 375 P 375 4 5 17 3 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT I 376 I 376 4 5 17 3 4 5 6 7 7 9 9 11 12 13 15 15 17 19 19 20 21 22 23 LCS_GDT F 377 F 377 3 5 17 0 3 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 22 23 LCS_GDT Q 378 Q 378 4 4 17 3 4 5 5 6 6 7 8 10 11 12 15 16 17 19 19 20 21 22 23 LCS_GDT W 379 W 379 4 4 12 3 4 5 5 6 6 7 8 10 11 12 14 16 17 19 19 20 21 22 23 LCS_GDT S 380 S 380 4 4 12 3 4 4 4 7 7 7 7 10 11 12 14 16 17 19 19 20 21 22 23 LCS_GDT E 381 E 381 4 4 12 3 4 4 4 7 7 7 7 9 10 12 13 15 16 18 19 20 21 22 23 LCS_AVERAGE LCS_A: 24.35 ( 11.34 14.57 47.14 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 7 7 9 9 11 12 13 15 16 17 19 19 20 21 22 23 GDT PERCENT_AT 12.90 12.90 16.13 19.35 22.58 22.58 29.03 29.03 35.48 38.71 41.94 48.39 51.61 54.84 61.29 61.29 64.52 67.74 70.97 74.19 GDT RMS_LOCAL 0.34 0.34 0.84 1.22 1.67 1.67 2.60 2.60 3.57 3.61 3.86 4.33 4.98 5.13 5.40 5.40 5.59 6.05 6.28 6.61 GDT RMS_ALL_AT 16.99 16.99 16.42 15.74 15.34 15.34 15.13 15.13 15.71 15.75 16.01 16.43 15.04 15.12 15.46 15.46 14.98 11.26 11.16 10.84 # Checking swapping # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 24.979 0 0.132 0.552 25.457 0.000 0.000 LGA A 352 A 352 24.679 0 0.596 0.562 26.256 0.000 0.000 LGA E 353 E 353 24.096 0 0.575 0.522 25.265 0.000 0.000 LGA E 354 E 354 27.228 0 0.608 0.970 33.813 0.000 0.000 LGA L 355 L 355 25.971 0 0.630 1.339 28.939 0.000 0.000 LGA G 356 G 356 24.437 0 0.558 0.558 25.072 0.000 0.000 LGA N 357 N 357 26.294 0 0.271 0.291 31.782 0.000 0.000 LGA I 358 I 358 23.575 0 0.561 1.007 28.084 0.000 0.000 LGA I 359 I 359 20.439 0 0.591 0.599 26.775 0.000 0.000 LGA V 360 V 360 15.327 0 0.580 1.429 17.487 0.000 0.000 LGA A 361 A 361 10.112 0 0.654 0.639 12.252 5.119 4.095 LGA W 362 W 362 5.879 0 0.608 1.067 9.249 20.357 9.286 LGA N 363 N 363 2.391 0 0.038 0.150 3.538 70.000 65.476 LGA P 364 P 364 1.967 0 0.642 0.572 3.075 71.310 69.932 LGA N 365 N 365 6.208 0 0.627 0.842 10.196 15.357 9.167 LGA L 366 L 366 9.020 0 0.549 1.470 13.873 5.833 2.917 LGA W 367 W 367 7.853 0 0.062 1.222 13.929 6.548 2.279 LGA K 368 K 368 6.544 0 0.062 0.839 7.357 11.667 17.513 LGA K 369 K 369 6.327 0 0.045 1.108 8.716 17.262 13.439 LGA G 370 G 370 8.564 0 0.550 0.550 8.564 9.167 9.167 LGA T 371 T 371 3.438 0 0.124 0.148 4.972 52.738 52.857 LGA N 372 N 372 3.334 0 0.092 1.219 9.323 61.429 35.952 LGA G 373 G 373 3.400 0 0.663 0.663 4.101 56.429 56.429 LGA Y 374 Y 374 1.279 0 0.088 0.131 4.775 79.286 62.183 LGA P 375 P 375 1.968 0 0.042 0.371 2.534 79.405 72.041 LGA I 376 I 376 1.971 0 0.546 1.421 4.768 58.571 53.690 LGA F 377 F 377 2.752 0 0.599 1.471 7.315 42.500 44.545 LGA Q 378 Q 378 9.047 0 0.612 0.925 11.622 4.643 2.116 LGA W 379 W 379 13.692 0 0.046 1.134 16.176 0.000 0.136 LGA S 380 S 380 14.767 0 0.032 0.674 15.758 0.000 0.000 LGA E 381 E 381 18.572 1 0.100 1.149 25.693 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.317 9.189 10.544 21.536 18.814 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.60 30.645 27.241 0.333 LGA_LOCAL RMSD: 2.604 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.128 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.317 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.352058 * X + 0.393913 * Y + -0.849051 * Z + 19.848104 Y_new = 0.903257 * X + 0.094774 * Y + 0.418504 * Z + 22.336742 Z_new = 0.245322 * X + -0.914248 * Y + -0.322439 * Z + 83.141014 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.199144 -0.247852 -1.909858 [DEG: 68.7059 -14.2009 -109.4268 ] ZXZ: -2.028754 1.899101 2.879436 [DEG: -116.2390 108.8105 164.9795 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS244_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS244_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.60 27.241 9.32 REMARK ---------------------------------------------------------- MOLECULE T0537TS244_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 24.859 25.221 59.410 1.00999.00 N ATOM 2530 CA SER 351 25.309 23.870 59.744 1.00999.00 C ATOM 2531 CB SER 351 24.221 22.846 59.414 1.00999.00 C ATOM 2532 OG SER 351 24.662 21.528 59.690 1.00999.00 O ATOM 2533 O SER 351 26.589 23.739 57.751 1.00999.00 O ATOM 2534 C SER 351 26.582 23.624 58.967 1.00999.00 C ATOM 2535 N ALA 352 27.640 23.246 59.678 1.00999.00 N ATOM 2536 CA ALA 352 28.960 23.027 59.116 1.00999.00 C ATOM 2537 CB ALA 352 29.969 23.977 59.745 1.00999.00 C ATOM 2538 O ALA 352 29.644 21.164 60.451 1.00999.00 O ATOM 2539 C ALA 352 29.358 21.580 59.335 1.00999.00 C ATOM 2540 N GLU 353 29.387 20.808 58.253 1.00999.00 N ATOM 2541 CA GLU 353 29.891 19.439 58.271 1.00999.00 C ATOM 2542 CB GLU 353 29.198 18.268 58.301 1.00999.00 C ATOM 2543 CG GLU 353 30.115 17.046 57.946 1.00999.00 C ATOM 2544 CD GLU 353 29.425 15.726 58.245 1.00999.00 C ATOM 2545 OE1 GLU 353 28.174 15.788 57.844 1.00999.00 O ATOM 2546 OE2 GLU 353 29.918 14.747 58.865 1.00999.00 O ATOM 2547 O GLU 353 31.633 19.446 56.615 1.00999.00 O ATOM 2548 C GLU 353 31.346 19.456 57.805 1.00999.00 C ATOM 2549 N GLU 354 32.262 19.515 58.758 1.00999.00 N ATOM 2550 CA GLU 354 33.681 19.548 58.433 1.00999.00 C ATOM 2551 CB GLU 354 34.497 20.026 59.634 1.00999.00 C ATOM 2552 CG GLU 354 34.203 21.458 60.053 1.00999.00 C ATOM 2553 CD GLU 354 34.640 22.471 59.015 1.00999.00 C ATOM 2554 OE1 GLU 354 35.772 22.345 58.502 1.00999.00 O ATOM 2555 OE2 GLU 354 33.852 23.391 58.713 1.00999.00 O ATOM 2556 O GLU 354 33.470 17.164 58.372 1.00999.00 O ATOM 2557 C GLU 354 34.136 18.147 58.054 1.00999.00 C ATOM 2558 N LEU 355 35.345 18.062 57.320 1.00999.00 N ATOM 2559 CA LEU 355 35.901 16.777 56.914 1.00999.00 C ATOM 2560 CB LEU 355 37.218 16.981 56.162 1.00999.00 C ATOM 2561 CG LEU 355 37.917 15.715 55.664 1.00999.00 C ATOM 2562 CD1 LEU 355 37.081 15.023 54.599 1.00999.00 C ATOM 2563 CD2 LEU 355 39.300 16.042 55.122 1.00999.00 C ATOM 2564 O LEU 355 36.780 16.427 59.120 1.00999.00 O ATOM 2565 C LEU 355 36.101 15.978 58.204 1.00999.00 C ATOM 2566 N GLY 356 35.513 14.796 58.301 1.00999.00 N ATOM 2567 CA GLY 356 35.544 14.052 59.561 1.00999.00 C ATOM 2568 O GLY 356 37.721 13.272 58.963 1.00999.00 O ATOM 2569 C GLY 356 36.850 13.325 59.826 1.00999.00 C ATOM 2570 N ASN 357 36.967 12.767 61.025 1.00999.00 N ATOM 2571 CA ASN 357 38.180 12.092 61.479 1.00999.00 C ATOM 2572 CB ASN 357 38.867 12.843 62.612 1.00999.00 C ATOM 2573 CG ASN 357 39.621 14.037 62.112 1.00999.00 C ATOM 2574 ND2 ASN 357 40.355 14.663 62.994 1.00999.00 N ATOM 2575 OD1 ASN 357 39.600 14.353 60.917 1.00999.00 O ATOM 2576 O ASN 357 38.881 9.885 62.024 1.00999.00 O ATOM 2577 C ASN 357 38.009 10.582 61.534 1.00999.00 C ATOM 2578 N ILE 358 36.949 10.065 60.935 1.00999.00 N ATOM 2579 CA ILE 358 36.539 8.681 61.095 1.00999.00 C ATOM 2580 CB ILE 358 35.825 8.455 62.441 1.00999.00 C ATOM 2581 CG1 ILE 358 35.730 6.959 62.750 1.00999.00 C ATOM 2582 CG2 ILE 358 34.458 9.121 62.438 1.00999.00 C ATOM 2583 CD1 ILE 358 37.067 6.307 63.018 1.00999.00 C ATOM 2584 O ILE 358 35.091 9.017 59.220 1.00999.00 O ATOM 2585 C ILE 358 35.639 8.217 59.970 1.00999.00 C ATOM 2586 N ILE 359 35.449 6.908 59.910 1.00999.00 N ATOM 2587 CA ILE 359 34.466 6.272 59.043 1.00999.00 C ATOM 2588 CB ILE 359 34.572 4.736 59.100 1.00999.00 C ATOM 2589 CG1 ILE 359 35.920 4.273 58.542 1.00999.00 C ATOM 2590 CG2 ILE 359 33.404 4.094 58.369 1.00999.00 C ATOM 2591 CD1 ILE 359 36.205 2.806 58.772 1.00999.00 C ATOM 2592 O ILE 359 32.751 6.792 60.674 1.00999.00 O ATOM 2593 C ILE 359 33.087 6.775 59.498 1.00999.00 C ATOM 2594 N VAL 360 32.254 7.107 58.535 1.00999.00 N ATOM 2595 CA VAL 360 30.997 7.797 58.804 1.00999.00 C ATOM 2596 CB VAL 360 30.797 8.989 57.850 1.00999.00 C ATOM 2597 CG1 VAL 360 31.910 10.010 58.029 1.00999.00 C ATOM 2598 CG2 VAL 360 30.733 8.512 56.406 1.00999.00 C ATOM 2599 O VAL 360 29.795 5.805 58.194 1.00999.00 O ATOM 2600 C VAL 360 29.768 6.905 58.737 1.00999.00 C ATOM 2601 N ALA 361 28.679 7.419 59.296 1.00999.00 N ATOM 2602 CA ALA 361 27.363 6.825 59.213 1.00999.00 C ATOM 2603 CB ALA 361 27.066 5.989 60.448 1.00999.00 C ATOM 2604 O ALA 361 26.691 9.082 58.722 1.00999.00 O ATOM 2605 C ALA 361 26.340 7.948 59.041 1.00999.00 C ATOM 2606 N TRP 362 25.066 7.671 59.297 1.00999.00 N ATOM 2607 CA TRP 362 24.039 8.636 58.927 1.00999.00 C ATOM 2608 CB TRP 362 22.647 8.021 59.084 1.00999.00 C ATOM 2609 CG TRP 362 22.353 6.941 58.086 1.00999.00 C ATOM 2610 CD1 TRP 362 22.362 5.597 58.311 1.00999.00 C ATOM 2611 CD2 TRP 362 22.003 7.119 56.708 1.00999.00 C ATOM 2612 CE2 TRP 362 21.817 5.837 56.158 1.00999.00 C ATOM 2613 CE3 TRP 362 21.832 8.236 55.885 1.00999.00 C ATOM 2614 NE1 TRP 362 22.041 4.921 57.156 1.00999.00 N ATOM 2615 CZ2 TRP 362 21.467 5.641 54.824 1.00999.00 C ATOM 2616 CZ3 TRP 362 21.485 8.036 54.563 1.00999.00 C ATOM 2617 CH2 TRP 362 21.305 6.751 54.041 1.00999.00 H ATOM 2618 O TRP 362 24.286 9.935 60.938 1.00999.00 O ATOM 2619 C TRP 362 24.080 9.933 59.720 1.00999.00 C ATOM 2620 N ASN 363 23.845 11.028 58.993 1.00999.00 N ATOM 2621 CA ASN 363 23.735 12.370 59.565 1.00999.00 C ATOM 2622 CB ASN 363 25.007 13.174 59.291 1.00999.00 C ATOM 2623 CG ASN 363 24.983 14.542 59.941 1.00999.00 C ATOM 2624 ND2 ASN 363 26.148 15.172 60.040 1.00999.00 N ATOM 2625 OD1 ASN 363 23.927 15.027 60.351 1.00999.00 O ATOM 2626 O ASN 363 22.516 13.737 57.982 1.00999.00 O ATOM 2627 C ASN 363 22.464 13.037 58.993 1.00999.00 C ATOM 2628 N PRO 364 21.333 12.856 59.649 1.00999.00 N ATOM 2629 CA PRO 364 20.101 13.510 59.209 1.00999.00 C ATOM 2630 CB PRO 364 19.013 12.833 59.239 1.00999.00 C ATOM 2631 CG PRO 364 19.286 11.541 59.940 1.00999.00 C ATOM 2632 CD PRO 364 20.690 11.210 59.439 1.00999.00 C ATOM 2633 O PRO 364 20.120 15.324 60.784 1.00999.00 O ATOM 2634 C PRO 364 19.919 14.967 59.624 1.00999.00 C ATOM 2635 N ASN 365 19.465 15.792 58.675 1.00999.00 N ATOM 2636 CA ASN 365 19.088 17.172 58.952 1.00999.00 C ATOM 2637 CB ASN 365 20.118 18.136 58.360 1.00999.00 C ATOM 2638 CG ASN 365 19.824 19.584 58.700 1.00999.00 C ATOM 2639 ND2 ASN 365 20.817 20.447 58.518 1.00999.00 N ATOM 2640 OD1 ASN 365 18.716 19.919 59.120 1.00999.00 O ATOM 2641 O ASN 365 17.550 17.276 57.133 1.00999.00 O ATOM 2642 C ASN 365 17.693 17.301 58.350 1.00999.00 C ATOM 2643 N LEU 366 16.664 17.409 59.174 1.00999.00 N ATOM 2644 CA LEU 366 15.271 17.400 58.713 1.00999.00 C ATOM 2645 CB LEU 366 14.369 16.788 59.787 1.00999.00 C ATOM 2646 CG LEU 366 14.688 15.350 60.201 1.00999.00 C ATOM 2647 CD1 LEU 366 13.775 14.900 61.333 1.00999.00 C ATOM 2648 CD2 LEU 366 14.560 14.408 59.014 1.00999.00 C ATOM 2649 O LEU 366 15.307 19.777 58.727 1.00999.00 O ATOM 2650 C LEU 366 14.726 18.769 58.356 1.00999.00 C ATOM 2651 N TRP 367 13.594 18.802 57.736 1.00999.00 N ATOM 2652 CA TRP 367 12.924 20.053 57.400 1.00999.00 C ATOM 2653 CB TRP 367 11.747 19.869 56.440 1.00999.00 C ATOM 2654 CG TRP 367 10.678 18.964 56.970 1.00999.00 C ATOM 2655 CD1 TRP 367 9.628 19.316 57.768 1.00999.00 C ATOM 2656 CD2 TRP 367 10.553 17.556 56.739 1.00999.00 C ATOM 2657 CE2 TRP 367 9.408 17.121 57.427 1.00999.00 C ATOM 2658 CE3 TRP 367 11.302 16.619 56.018 1.00999.00 C ATOM 2659 NE1 TRP 367 8.856 18.214 58.050 1.00999.00 N ATOM 2660 CZ2 TRP 367 8.988 15.791 57.416 1.00999.00 C ATOM 2661 CZ3 TRP 367 10.882 15.303 56.009 1.00999.00 C ATOM 2662 CH2 TRP 367 9.737 14.899 56.703 1.00999.00 H ATOM 2663 O TRP 367 12.245 19.936 59.722 1.00999.00 O ATOM 2664 C TRP 367 12.428 20.652 58.707 1.00999.00 C ATOM 2665 N LYS 368 12.148 21.952 58.698 1.00999.00 N ATOM 2666 CA LYS 368 11.802 22.648 59.960 1.00999.00 C ATOM 2667 CB LYS 368 11.843 24.164 59.767 1.00999.00 C ATOM 2668 CG LYS 368 13.232 24.719 59.495 1.00999.00 C ATOM 2669 CD LYS 368 13.205 26.231 59.351 1.00999.00 C ATOM 2670 CE LYS 368 14.593 26.784 59.074 1.00999.00 C ATOM 2671 NZ LYS 368 14.580 28.265 58.915 1.00999.00 N ATOM 2672 O LYS 368 9.524 21.968 59.736 1.00999.00 O ATOM 2673 C LYS 368 10.461 22.268 60.502 1.00999.00 C ATOM 2674 N LYS 369 10.374 22.246 61.831 1.00999.00 N ATOM 2675 CA LYS 369 9.083 22.014 62.447 1.00999.00 C ATOM 2676 CB LYS 369 9.256 21.434 63.852 1.00999.00 C ATOM 2677 CG LYS 369 7.950 21.198 64.594 1.00999.00 C ATOM 2678 CD LYS 369 7.196 20.012 64.017 1.00999.00 C ATOM 2679 CE LYS 369 5.945 19.707 64.826 1.00999.00 C ATOM 2680 NZ LYS 369 5.174 18.570 64.249 1.00999.00 N ATOM 2681 O LYS 369 8.949 24.442 62.472 1.00999.00 O ATOM 2682 C LYS 369 8.343 23.355 62.460 1.00999.00 C ATOM 2683 N GLY 370 6.933 23.109 62.268 1.00999.00 N ATOM 2684 CA GLY 370 5.953 24.198 62.306 1.00999.00 C ATOM 2685 O GLY 370 4.700 24.808 60.364 1.00999.00 O ATOM 2686 C GLY 370 5.796 24.781 60.913 1.00999.00 C ATOM 2687 N THR 371 6.889 25.221 60.325 1.00999.00 N ATOM 2688 CA THR 371 6.836 25.813 59.024 1.00999.00 C ATOM 2689 CB THR 371 7.785 27.019 58.912 1.00999.00 C ATOM 2690 CG2 THR 371 7.434 28.070 59.954 1.00999.00 C ATOM 2691 OG1 THR 371 9.136 26.590 59.129 1.00999.00 O ATOM 2692 O THR 371 6.998 25.250 56.686 1.00999.00 O ATOM 2693 C THR 371 7.170 24.873 57.853 1.00999.00 C ATOM 2694 N ASN 372 7.628 23.687 58.159 1.00999.00 N ATOM 2695 CA ASN 372 7.961 22.712 57.119 1.00999.00 C ATOM 2696 CB ASN 372 6.690 22.197 56.440 1.00999.00 C ATOM 2697 CG ASN 372 5.795 21.422 57.387 1.00999.00 C ATOM 2698 ND2 ASN 372 4.496 21.675 57.311 1.00999.00 N ATOM 2699 OD1 ASN 372 6.271 20.607 58.177 1.00999.00 O ATOM 2700 O ASN 372 8.909 22.855 54.921 1.00999.00 O ATOM 2701 C ASN 372 8.937 23.261 56.082 1.00999.00 C ATOM 2702 N GLY 373 9.748 24.256 56.552 1.00999.00 N ATOM 2703 CA GLY 373 10.716 24.816 55.624 1.00999.00 C ATOM 2704 O GLY 373 12.401 23.229 56.281 1.00999.00 O ATOM 2705 C GLY 373 11.799 23.772 55.348 1.00999.00 C ATOM 2706 N TYR 374 12.033 23.440 54.092 1.00999.00 N ATOM 2707 CA TYR 374 12.981 22.372 53.816 1.00999.00 C ATOM 2708 CB TYR 374 13.050 22.093 52.313 1.00999.00 C ATOM 2709 CG TYR 374 11.815 21.419 51.757 1.00999.00 C ATOM 2710 CD1 TYR 374 10.908 22.126 50.978 1.00999.00 C ATOM 2711 CD2 TYR 374 11.560 20.079 52.015 1.00999.00 C ATOM 2712 CE1 TYR 374 9.778 21.518 50.467 1.00999.00 C ATOM 2713 CE2 TYR 374 10.435 19.454 51.513 1.00999.00 C ATOM 2714 CZ TYR 374 9.541 20.187 50.733 1.00999.00 C ATOM 2715 OH TYR 374 8.415 19.580 50.225 1.00999.00 H ATOM 2716 O TYR 374 14.801 23.808 54.282 1.00999.00 O ATOM 2717 C TYR 374 14.375 22.673 54.331 1.00999.00 C ATOM 2718 N PRO 375 15.091 21.655 54.818 1.00999.00 N ATOM 2719 CA PRO 375 16.426 21.910 55.299 1.00999.00 C ATOM 2720 CB PRO 375 16.865 20.575 55.902 1.00999.00 C ATOM 2721 CG PRO 375 16.047 19.554 55.184 1.00999.00 C ATOM 2722 CD PRO 375 14.728 20.210 54.892 1.00999.00 C ATOM 2723 O PRO 375 17.194 21.739 53.065 1.00999.00 O ATOM 2724 C PRO 375 17.311 22.320 54.135 1.00999.00 C ATOM 2725 N ILE 376 18.156 23.359 54.378 1.00999.00 N ATOM 2726 CA ILE 376 19.029 23.819 53.289 1.00999.00 C ATOM 2727 CB ILE 376 19.775 25.100 53.701 1.00999.00 C ATOM 2728 CG1 ILE 376 18.799 26.273 53.814 1.00999.00 C ATOM 2729 CG2 ILE 376 20.904 25.397 52.726 1.00999.00 C ATOM 2730 CD1 ILE 376 19.390 27.496 54.481 1.00999.00 C ATOM 2731 O ILE 376 20.133 22.451 51.715 1.00999.00 O ATOM 2732 C ILE 376 20.011 22.736 52.917 1.00999.00 C ATOM 2733 N PHE 377 20.397 22.317 54.319 1.00999.00 N ATOM 2734 CA PHE 377 21.297 21.204 54.074 1.00999.00 C ATOM 2735 CB PHE 377 21.885 20.689 55.390 1.00999.00 C ATOM 2736 CG PHE 377 22.840 19.543 55.219 1.00999.00 C ATOM 2737 CD1 PHE 377 24.141 19.762 54.806 1.00999.00 C ATOM 2738 CD2 PHE 377 22.436 18.244 55.475 1.00999.00 C ATOM 2739 CE1 PHE 377 25.020 18.707 54.650 1.00999.00 C ATOM 2740 CE2 PHE 377 23.314 17.189 55.320 1.00999.00 C ATOM 2741 CZ PHE 377 24.602 17.416 54.909 1.00999.00 C ATOM 2742 O PHE 377 21.052 19.489 52.394 1.00999.00 O ATOM 2743 C PHE 377 20.552 20.087 53.340 1.00999.00 C ATOM 2744 N GLN 378 19.417 19.699 53.763 1.00999.00 N ATOM 2745 CA GLN 378 18.617 18.622 53.171 1.00999.00 C ATOM 2746 CB GLN 378 17.804 17.904 54.248 1.00999.00 C ATOM 2747 CG GLN 378 16.996 16.722 53.733 1.00999.00 C ATOM 2748 CD GLN 378 16.246 16.003 54.837 1.00999.00 C ATOM 2749 OE1 GLN 378 16.126 16.511 55.951 1.00999.00 O ATOM 2750 NE2 GLN 378 15.734 14.817 54.527 1.00999.00 N ATOM 2751 O GLN 378 16.825 19.942 52.342 1.00999.00 O ATOM 2752 C GLN 378 17.695 19.135 52.095 1.00999.00 C ATOM 2753 N TRP 379 17.940 18.738 50.864 1.00999.00 N ATOM 2754 CA TRP 379 17.097 19.174 49.761 1.00999.00 C ATOM 2755 CB TRP 379 17.939 19.422 48.508 1.00999.00 C ATOM 2756 CG TRP 379 18.917 20.548 48.654 1.00999.00 C ATOM 2757 CD1 TRP 379 20.272 20.446 48.775 1.00999.00 C ATOM 2758 CD2 TRP 379 18.613 21.948 48.696 1.00999.00 C ATOM 2759 CE2 TRP 379 19.833 22.633 48.842 1.00999.00 C ATOM 2760 CE3 TRP 379 17.429 22.687 48.624 1.00999.00 C ATOM 2761 NE1 TRP 379 20.833 21.696 48.889 1.00999.00 N ATOM 2762 CZ2 TRP 379 19.903 24.024 48.918 1.00999.00 C ATOM 2763 CZ3 TRP 379 17.505 24.066 48.698 1.00999.00 C ATOM 2764 CH2 TRP 379 18.731 24.721 48.844 1.00999.00 H ATOM 2765 O TRP 379 15.142 18.391 48.610 1.00999.00 O ATOM 2766 C TRP 379 16.004 18.168 49.452 1.00999.00 C ATOM 2767 N SER 380 15.992 17.065 50.166 1.00999.00 N ATOM 2768 CA SER 380 14.911 16.088 50.132 1.00999.00 C ATOM 2769 CB SER 380 15.298 14.832 50.916 1.00999.00 C ATOM 2770 OG SER 380 14.230 13.903 50.950 1.00999.00 O ATOM 2771 O SER 380 13.663 17.499 51.544 1.00999.00 O ATOM 2772 C SER 380 13.624 16.655 50.684 1.00999.00 C ATOM 2773 N GLU 381 12.499 16.236 50.114 1.00999.00 N ATOM 2774 CA GLU 381 11.202 16.682 50.580 1.00999.00 C ATOM 2775 CB GLU 381 10.120 16.350 49.551 1.00999.00 C ATOM 2776 CG GLU 381 10.271 17.088 48.231 1.00999.00 C ATOM 2777 CD GLU 381 9.179 16.738 47.239 1.00999.00 C ATOM 2778 OE1 GLU 381 8.388 15.815 47.528 1.00999.00 O ATOM 2779 OE2 GLU 381 9.114 17.387 46.174 1.00999.00 O ATOM 2780 O GLU 381 11.535 15.090 52.402 1.00999.00 O ATOM 2781 C GLU 381 10.889 16.039 51.920 1.00999.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.53 43.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 111.05 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.98 44.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 114.61 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.63 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 90.91 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 66.68 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 94.19 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 79.64 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.38 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 77.23 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 89.99 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.49 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 49.46 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 42.52 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 45.54 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 47.77 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 42.52 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 2.64 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 2.64 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 2.64 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.32 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.32 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3005 CRMSCA SECONDARY STRUCTURE . . 8.89 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.91 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.18 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.33 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.86 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.94 129 100.0 129 CRMSMC BURIED . . . . . . . . 11.26 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.99 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 12.00 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.92 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.90 119 99.2 120 CRMSSC BURIED . . . . . . . . 13.06 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.71 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 9.84 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.54 223 99.6 224 CRMSALL BURIED . . . . . . . . 11.90 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.212 0.983 0.983 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 990.991 0.984 0.984 11 100.0 11 ERRCA SURFACE . . . . . . . . 990.596 0.983 0.983 26 100.0 26 ERRCA BURIED . . . . . . . . 988.215 0.979 0.979 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.215 0.983 0.983 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 991.019 0.984 0.984 54 100.0 54 ERRMC SURFACE . . . . . . . . 990.587 0.983 0.983 129 100.0 129 ERRMC BURIED . . . . . . . . 988.126 0.978 0.979 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 987.773 0.978 0.978 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 987.792 0.978 0.978 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 988.967 0.980 0.980 41 100.0 41 ERRSC SURFACE . . . . . . . . 987.857 0.978 0.978 119 99.2 120 ERRSC BURIED . . . . . . . . 986.774 0.976 0.976 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 989.036 0.980 0.981 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 990.099 0.982 0.983 85 100.0 85 ERRALL SURFACE . . . . . . . . 989.226 0.981 0.981 223 99.6 224 ERRALL BURIED . . . . . . . . 987.624 0.978 0.978 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 4 19 31 31 DISTCA CA (P) 0.00 3.23 3.23 12.90 61.29 31 DISTCA CA (RMS) 0.00 1.33 1.33 3.85 7.22 DISTCA ALL (N) 0 4 6 29 127 253 254 DISTALL ALL (P) 0.00 1.57 2.36 11.42 50.00 254 DISTALL ALL (RMS) 0.00 1.66 2.03 3.75 7.26 DISTALL END of the results output