####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS242_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS242_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 351 - 365 4.93 14.76 LONGEST_CONTINUOUS_SEGMENT: 15 352 - 366 4.90 14.66 LONGEST_CONTINUOUS_SEGMENT: 15 363 - 377 4.87 15.41 LONGEST_CONTINUOUS_SEGMENT: 15 364 - 378 4.97 15.47 LCS_AVERAGE: 47.76 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 2.00 24.67 LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.93 27.14 LCS_AVERAGE: 18.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.87 14.84 LCS_AVERAGE: 11.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 15 0 3 3 3 3 3 4 4 8 9 9 10 12 12 15 16 17 18 18 21 LCS_GDT A 352 A 352 3 3 15 0 3 3 3 3 3 7 7 9 10 11 13 14 14 15 16 17 18 18 19 LCS_GDT E 353 E 353 3 3 15 3 3 3 3 3 4 7 8 10 11 11 13 14 14 15 16 17 18 18 19 LCS_GDT E 354 E 354 3 4 15 3 3 4 4 4 5 7 8 10 11 11 13 14 14 15 16 17 18 19 21 LCS_GDT L 355 L 355 3 4 15 3 3 4 4 4 5 5 7 10 11 11 13 14 14 15 16 17 18 18 19 LCS_GDT G 356 G 356 3 4 15 3 3 4 4 4 5 5 7 10 11 11 12 14 14 15 16 17 18 18 19 LCS_GDT N 357 N 357 3 4 15 3 3 4 4 4 5 7 8 10 11 11 13 14 14 15 16 17 18 19 21 LCS_GDT I 358 I 358 4 6 15 3 3 4 5 6 6 7 8 10 11 11 13 14 14 15 16 17 18 19 21 LCS_GDT I 359 I 359 4 6 15 3 3 4 5 6 6 7 8 10 11 11 13 14 14 15 16 17 18 18 21 LCS_GDT V 360 V 360 4 6 15 3 3 4 5 6 6 7 8 10 11 11 13 14 14 15 16 17 18 19 21 LCS_GDT A 361 A 361 4 6 15 3 3 4 5 6 6 7 8 10 11 11 13 14 14 15 16 18 18 19 21 LCS_GDT W 362 W 362 4 6 15 3 3 4 5 6 7 8 9 10 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT N 363 N 363 4 6 15 3 3 4 6 7 7 8 9 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT P 364 P 364 4 4 15 3 3 4 6 7 7 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT N 365 N 365 4 4 15 3 3 4 4 5 7 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT L 366 L 366 3 4 15 3 3 4 4 4 6 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT W 367 W 367 3 6 15 3 3 4 4 6 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT K 368 K 368 5 7 15 3 4 5 5 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT K 369 K 369 5 7 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT G 370 G 370 5 7 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT T 371 T 371 5 8 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT N 372 N 372 5 8 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 20 LCS_GDT G 373 G 373 4 8 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 19 LCS_GDT Y 374 Y 374 4 8 15 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 19 LCS_GDT P 375 P 375 4 8 15 3 4 4 6 7 8 10 10 10 11 12 12 12 14 14 16 18 18 18 19 LCS_GDT I 376 I 376 4 8 15 3 4 4 5 7 8 10 10 10 11 12 12 13 15 16 16 18 18 19 19 LCS_GDT F 377 F 377 3 8 15 3 3 4 6 7 8 10 10 10 11 12 12 14 15 16 16 18 18 19 19 LCS_GDT Q 378 Q 378 3 8 15 3 3 4 6 7 8 10 10 10 11 12 12 14 15 16 16 18 18 19 21 LCS_GDT W 379 W 379 3 8 13 3 3 4 6 7 7 10 10 10 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT S 380 S 380 3 4 13 3 3 3 4 6 6 7 9 10 12 12 13 14 15 16 16 18 18 19 21 LCS_GDT E 381 E 381 3 4 13 3 3 3 4 4 4 4 5 8 11 12 12 12 12 12 16 17 18 18 21 LCS_AVERAGE LCS_A: 26.15 ( 11.97 18.73 47.76 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 8 10 11 11 12 12 13 14 15 16 16 18 18 19 21 GDT PERCENT_AT 9.68 12.90 16.13 19.35 22.58 25.81 32.26 35.48 35.48 38.71 38.71 41.94 45.16 48.39 51.61 51.61 58.06 58.06 61.29 67.74 GDT RMS_LOCAL 0.07 0.56 0.87 1.44 1.61 2.00 2.48 2.86 2.86 3.31 3.31 3.61 3.93 4.20 4.56 4.56 5.31 5.31 5.70 7.33 GDT RMS_ALL_AT 21.96 28.88 14.84 12.09 26.35 24.67 25.28 17.68 17.68 12.34 12.34 12.46 12.75 12.89 13.34 13.34 12.74 12.74 12.99 10.43 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 32.537 0 0.068 0.667 33.938 0.000 0.000 LGA A 352 A 352 33.268 0 0.622 0.604 33.765 0.000 0.000 LGA E 353 E 353 29.597 0 0.615 0.866 31.332 0.000 0.000 LGA E 354 E 354 28.732 0 0.618 0.581 29.557 0.000 0.000 LGA L 355 L 355 32.982 0 0.022 0.212 40.618 0.000 0.000 LGA G 356 G 356 29.006 0 0.585 0.585 30.423 0.000 0.000 LGA N 357 N 357 22.853 0 0.593 1.406 25.324 0.000 0.000 LGA I 358 I 358 23.260 0 0.597 1.040 26.051 0.000 0.000 LGA I 359 I 359 24.503 0 0.590 0.867 30.155 0.000 0.000 LGA V 360 V 360 18.675 0 0.505 1.355 21.028 0.000 0.000 LGA A 361 A 361 13.996 0 0.107 0.104 15.939 0.000 0.000 LGA W 362 W 362 14.561 0 0.622 0.978 24.956 0.000 0.000 LGA N 363 N 363 8.403 0 0.282 0.856 10.624 6.310 6.071 LGA P 364 P 364 3.897 0 0.696 0.604 5.277 45.714 39.660 LGA N 365 N 365 2.935 0 0.701 0.576 6.795 61.429 42.857 LGA L 366 L 366 3.326 0 0.608 1.376 7.339 55.714 40.893 LGA W 367 W 367 3.111 0 0.579 1.326 11.725 52.500 18.741 LGA K 368 K 368 3.818 0 0.363 0.892 9.029 57.619 32.963 LGA K 369 K 369 2.385 0 0.057 0.828 10.335 66.905 39.259 LGA G 370 G 370 1.835 0 0.095 0.095 2.022 72.976 72.976 LGA T 371 T 371 1.763 0 0.097 1.151 3.222 68.929 67.347 LGA N 372 N 372 2.337 0 0.736 1.347 6.396 69.048 48.333 LGA G 373 G 373 2.082 0 0.719 0.719 4.944 56.548 56.548 LGA Y 374 Y 374 2.931 0 0.184 1.419 8.030 38.452 42.817 LGA P 375 P 375 8.547 0 0.120 0.284 10.142 12.143 8.435 LGA I 376 I 376 10.258 0 0.221 1.093 15.921 0.119 0.060 LGA F 377 F 377 10.654 0 0.083 1.276 12.859 0.000 11.602 LGA Q 378 Q 378 13.909 0 0.653 0.930 19.754 0.000 0.000 LGA W 379 W 379 14.331 0 0.687 1.403 16.839 0.000 0.612 LGA S 380 S 380 15.723 0 0.060 0.772 16.896 0.000 0.000 LGA E 381 E 381 19.453 1 0.198 1.093 24.787 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 10.250 10.162 10.905 21.432 17.070 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.86 29.839 27.688 0.372 LGA_LOCAL RMSD: 2.855 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.683 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 10.250 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.431476 * X + -0.883981 * Y + -0.180017 * Z + 85.133896 Y_new = -0.848878 * X + 0.330302 * Y + 0.412683 * Z + -18.935469 Z_new = -0.305344 * X + 0.330876 * Y + -0.892909 * Z + 144.842255 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.041054 0.310300 2.786721 [DEG: -116.9438 17.7789 159.6673 ] ZXZ: -2.730264 2.674561 -0.745289 [DEG: -156.4326 153.2411 -42.7019 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS242_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS242_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.86 27.688 10.25 REMARK ---------------------------------------------------------- MOLECULE T0537TS242_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1rmg_A 1pcl_A ATOM 2529 N SER 351 4.562 -0.751 80.839 1.00 99.90 N ATOM 2530 CA SER 351 5.245 0.482 80.588 1.00 99.90 C ATOM 2531 C SER 351 6.594 0.326 81.209 1.00 99.90 C ATOM 2532 O SER 351 6.729 -0.272 82.275 1.00 99.90 O ATOM 2533 CB SER 351 4.576 1.703 81.242 1.00 99.90 C ATOM 2534 OG SER 351 3.292 1.919 80.675 1.00 99.90 O ATOM 2535 N ALA 352 7.645 0.855 80.554 1.00 99.90 N ATOM 2536 CA ALA 352 8.952 0.693 81.121 1.00 99.90 C ATOM 2537 C ALA 352 9.605 2.032 81.176 1.00 99.90 C ATOM 2538 O ALA 352 9.375 2.886 80.323 1.00 99.90 O ATOM 2539 CB ALA 352 9.867 -0.229 80.298 1.00 99.90 C ATOM 2540 N GLU 353 10.436 2.251 82.211 1.00 99.90 N ATOM 2541 CA GLU 353 11.130 3.497 82.323 1.00 99.90 C ATOM 2542 C GLU 353 12.577 3.209 82.102 1.00 99.90 C ATOM 2543 O GLU 353 13.124 2.261 82.663 1.00 99.90 O ATOM 2544 CB GLU 353 11.002 4.160 83.705 1.00 99.90 C ATOM 2545 CG GLU 353 9.576 4.615 84.036 1.00 99.90 C ATOM 2546 CD GLU 353 9.593 5.249 85.421 1.00 99.90 C ATOM 2547 OE1 GLU 353 10.700 5.341 86.014 1.00 99.90 O ATOM 2548 OE2 GLU 353 8.497 5.644 85.901 1.00 99.90 O ATOM 2549 N GLU 354 13.233 4.023 81.253 1.00 99.90 N ATOM 2550 CA GLU 354 14.629 3.816 81.001 1.00 99.90 C ATOM 2551 C GLU 354 15.370 4.922 81.682 1.00 99.90 C ATOM 2552 O GLU 354 15.175 6.101 81.382 1.00 99.90 O ATOM 2553 CB GLU 354 14.998 3.867 79.507 1.00 99.90 C ATOM 2554 CG GLU 354 14.436 2.696 78.696 1.00 99.90 C ATOM 2555 CD GLU 354 14.873 2.874 77.249 1.00 99.90 C ATOM 2556 OE1 GLU 354 14.609 3.967 76.680 1.00 99.90 O ATOM 2557 OE2 GLU 354 15.481 1.919 76.693 1.00 99.90 O ATOM 2558 N LEU 355 16.215 4.538 82.655 1.00 99.90 N ATOM 2559 CA LEU 355 17.009 5.432 83.447 1.00 99.90 C ATOM 2560 C LEU 355 18.118 6.049 82.647 1.00 99.90 C ATOM 2561 O LEU 355 18.426 7.227 82.821 1.00 99.90 O ATOM 2562 CB LEU 355 17.667 4.729 84.648 1.00 99.90 C ATOM 2563 CG LEU 355 16.656 4.151 85.659 1.00 99.90 C ATOM 2564 CD1 LEU 355 17.373 3.481 86.843 1.00 99.90 C ATOM 2565 CD2 LEU 355 15.636 5.214 86.099 1.00 99.90 C ATOM 2566 N GLY 356 18.765 5.278 81.748 1.00 99.90 N ATOM 2567 CA GLY 356 19.920 5.834 81.100 1.00 99.90 C ATOM 2568 C GLY 356 19.805 5.693 79.618 1.00 99.90 C ATOM 2569 O GLY 356 18.999 4.925 79.101 1.00 99.90 O ATOM 2570 N ASN 357 20.668 6.440 78.900 1.00 99.90 N ATOM 2571 CA ASN 357 20.641 6.460 77.471 1.00 99.90 C ATOM 2572 C ASN 357 21.040 5.119 76.957 1.00 99.90 C ATOM 2573 O ASN 357 21.928 4.455 77.488 1.00 99.90 O ATOM 2574 CB ASN 357 21.594 7.495 76.852 1.00 99.90 C ATOM 2575 CG ASN 357 23.014 7.097 77.226 1.00 99.90 C ATOM 2576 OD1 ASN 357 23.293 6.767 78.377 1.00 99.90 O ATOM 2577 ND2 ASN 357 23.934 7.116 76.225 1.00 99.90 N ATOM 2578 N ILE 358 20.364 4.697 75.876 1.00 99.90 N ATOM 2579 CA ILE 358 20.593 3.436 75.245 1.00 99.90 C ATOM 2580 C ILE 358 21.868 3.517 74.473 1.00 99.90 C ATOM 2581 O ILE 358 22.252 4.585 73.997 1.00 99.90 O ATOM 2582 CB ILE 358 19.495 3.049 74.301 1.00 99.90 C ATOM 2583 CG1 ILE 358 19.700 1.614 73.793 1.00 99.90 C ATOM 2584 CG2 ILE 358 19.431 4.116 73.195 1.00 99.90 C ATOM 2585 CD1 ILE 358 19.560 0.559 74.889 1.00 99.90 C ATOM 2586 N ILE 359 22.574 2.372 74.380 1.00 99.90 N ATOM 2587 CA ILE 359 23.817 2.256 73.672 1.00 99.90 C ATOM 2588 C ILE 359 23.677 2.932 72.344 1.00 99.90 C ATOM 2589 O ILE 359 22.614 2.892 71.727 1.00 99.90 O ATOM 2590 CB ILE 359 24.247 0.838 73.430 1.00 99.90 C ATOM 2591 CG1 ILE 359 25.703 0.796 72.936 1.00 99.90 C ATOM 2592 CG2 ILE 359 23.239 0.189 72.467 1.00 99.90 C ATOM 2593 CD1 ILE 359 26.314 -0.606 72.958 1.00 99.90 C ATOM 2594 N VAL 360 24.790 3.546 71.891 1.00 99.90 N ATOM 2595 CA VAL 360 24.970 4.401 70.745 1.00 99.90 C ATOM 2596 C VAL 360 23.689 4.792 70.075 1.00 99.90 C ATOM 2597 O VAL 360 23.344 4.326 68.990 1.00 99.90 O ATOM 2598 CB VAL 360 25.895 3.812 69.717 1.00 99.90 C ATOM 2599 CG1 VAL 360 27.299 3.707 70.337 1.00 99.90 C ATOM 2600 CG2 VAL 360 25.333 2.457 69.252 1.00 99.90 C ATOM 2601 N ALA 361 22.954 5.691 70.751 1.00 99.90 N ATOM 2602 CA ALA 361 21.791 6.355 70.242 1.00 99.90 C ATOM 2603 C ALA 361 22.248 7.366 69.235 1.00 99.90 C ATOM 2604 O ALA 361 21.561 7.650 68.255 1.00 99.90 O ATOM 2605 CB ALA 361 21.010 7.110 71.330 1.00 99.90 C ATOM 2606 N TRP 362 23.442 7.940 69.490 1.00 99.90 N ATOM 2607 CA TRP 362 24.003 9.043 68.759 1.00 99.90 C ATOM 2608 C TRP 362 23.948 8.790 67.288 1.00 99.90 C ATOM 2609 O TRP 362 24.348 7.734 66.802 1.00 99.90 O ATOM 2610 CB TRP 362 25.480 9.298 69.106 1.00 99.90 C ATOM 2611 CG TRP 362 25.737 9.729 70.531 1.00 99.90 C ATOM 2612 CD1 TRP 362 25.822 8.968 71.659 1.00 99.90 C ATOM 2613 CD2 TRP 362 25.979 11.086 70.935 1.00 99.90 C ATOM 2614 NE1 TRP 362 26.100 9.767 72.744 1.00 99.90 N ATOM 2615 CE2 TRP 362 26.201 11.072 72.311 1.00 99.90 C ATOM 2616 CE3 TRP 362 26.019 12.245 70.216 1.00 99.90 C ATOM 2617 CZ2 TRP 362 26.466 12.225 72.994 1.00 99.90 C ATOM 2618 CZ3 TRP 362 26.283 13.406 70.907 1.00 99.90 C ATOM 2619 CH2 TRP 362 26.502 13.395 72.270 1.00 99.90 H ATOM 2620 N ASN 363 23.431 9.793 66.547 1.00 99.90 N ATOM 2621 CA ASN 363 23.362 9.737 65.116 1.00 99.90 C ATOM 2622 C ASN 363 23.536 11.140 64.615 1.00 99.90 C ATOM 2623 O ASN 363 23.271 12.102 65.334 1.00 99.90 O ATOM 2624 CB ASN 363 22.021 9.206 64.588 1.00 99.90 C ATOM 2625 CG ASN 363 22.195 8.887 63.112 1.00 99.90 C ATOM 2626 OD1 ASN 363 22.528 7.764 62.735 1.00 99.90 O ATOM 2627 ND2 ASN 363 21.959 9.906 62.246 1.00 99.90 N ATOM 2628 N PRO 364 23.996 11.263 63.395 1.00 99.90 N ATOM 2629 CA PRO 364 24.209 12.560 62.795 1.00 99.90 C ATOM 2630 C PRO 364 22.926 13.220 62.391 1.00 99.90 C ATOM 2631 O PRO 364 21.889 12.565 62.419 1.00 99.90 O ATOM 2632 CB PRO 364 25.151 12.326 61.616 1.00 99.90 C ATOM 2633 CG PRO 364 25.927 11.059 62.008 1.00 99.90 C ATOM 2634 CD PRO 364 24.949 10.282 62.902 1.00 99.90 C ATOM 2635 N ASN 365 22.974 14.525 62.037 1.00 99.90 N ATOM 2636 CA ASN 365 21.783 15.224 61.638 1.00 99.90 C ATOM 2637 C ASN 365 22.046 15.932 60.348 1.00 99.90 C ATOM 2638 O ASN 365 23.189 16.041 59.905 1.00 99.90 O ATOM 2639 CB ASN 365 21.324 16.291 62.647 1.00 99.90 C ATOM 2640 CG ASN 365 20.849 15.581 63.907 1.00 99.90 C ATOM 2641 OD1 ASN 365 20.129 14.586 63.840 1.00 99.90 O ATOM 2642 ND2 ASN 365 21.263 16.107 65.093 1.00 99.90 N ATOM 2643 N LEU 366 20.965 16.413 59.697 1.00 99.90 N ATOM 2644 CA LEU 366 21.094 17.121 58.458 1.00 99.90 C ATOM 2645 C LEU 366 21.031 18.571 58.837 1.00 99.90 C ATOM 2646 O LEU 366 20.147 19.001 59.575 1.00 99.90 O ATOM 2647 CB LEU 366 19.945 16.813 57.477 1.00 99.90 C ATOM 2648 CG LEU 366 20.173 17.266 56.018 1.00 99.90 C ATOM 2649 CD1 LEU 366 18.923 17.010 55.165 1.00 99.90 C ATOM 2650 CD2 LEU 366 20.677 18.710 55.913 1.00 99.90 C ATOM 2651 N TRP 367 21.980 19.374 58.329 1.00 99.90 N ATOM 2652 CA TRP 367 22.059 20.740 58.745 1.00 99.90 C ATOM 2653 C TRP 367 20.801 21.448 58.367 1.00 99.90 C ATOM 2654 O TRP 367 20.244 22.194 59.169 1.00 99.90 O ATOM 2655 CB TRP 367 23.239 21.500 58.112 1.00 99.90 C ATOM 2656 CG TRP 367 23.473 22.869 58.710 1.00 99.90 C ATOM 2657 CD1 TRP 367 24.259 23.210 59.773 1.00 99.90 C ATOM 2658 CD2 TRP 367 22.877 24.087 58.239 1.00 99.90 C ATOM 2659 NE1 TRP 367 24.187 24.565 59.994 1.00 99.90 N ATOM 2660 CE2 TRP 367 23.341 25.118 59.056 1.00 99.90 C ATOM 2661 CE3 TRP 367 22.015 24.328 57.208 1.00 99.90 C ATOM 2662 CZ2 TRP 367 22.947 26.410 58.856 1.00 99.90 C ATOM 2663 CZ3 TRP 367 21.619 25.633 57.009 1.00 99.90 C ATOM 2664 CH2 TRP 367 22.076 26.653 57.818 1.00 99.90 H ATOM 2665 N LYS 368 20.299 21.223 57.138 1.00 99.90 N ATOM 2666 CA LYS 368 19.146 21.972 56.744 1.00 99.90 C ATOM 2667 C LYS 368 17.913 21.226 57.115 1.00 99.90 C ATOM 2668 O LYS 368 17.249 20.636 56.264 1.00 99.90 O ATOM 2669 CB LYS 368 19.077 22.240 55.234 1.00 99.90 C ATOM 2670 CG LYS 368 17.990 23.246 54.849 1.00 99.90 C ATOM 2671 CD LYS 368 18.136 23.793 53.427 1.00 99.90 C ATOM 2672 CE LYS 368 17.049 24.797 53.039 1.00 99.90 C ATOM 2673 NZ LYS 368 15.729 24.132 53.001 1.00 99.90 N ATOM 2674 N LYS 369 17.555 21.256 58.409 1.00 99.90 N ATOM 2675 CA LYS 369 16.311 20.667 58.783 1.00 99.90 C ATOM 2676 C LYS 369 15.308 21.641 58.269 1.00 99.90 C ATOM 2677 O LYS 369 15.522 22.848 58.361 1.00 99.90 O ATOM 2678 CB LYS 369 16.101 20.583 60.304 1.00 99.90 C ATOM 2679 CG LYS 369 17.143 19.738 61.035 1.00 99.90 C ATOM 2680 CD LYS 369 17.137 19.972 62.546 1.00 99.90 C ATOM 2681 CE LYS 369 17.622 21.364 62.956 1.00 99.90 C ATOM 2682 NZ LYS 369 17.581 21.499 64.429 1.00 99.90 N ATOM 2683 N GLY 370 14.198 21.159 57.685 1.00 99.90 N ATOM 2684 CA GLY 370 13.249 22.093 57.160 1.00 99.90 C ATOM 2685 C GLY 370 12.578 22.785 58.298 1.00 99.90 C ATOM 2686 O GLY 370 12.146 22.155 59.260 1.00 99.90 O ATOM 2687 N THR 371 12.489 24.127 58.216 1.00 99.90 N ATOM 2688 CA THR 371 11.792 24.862 59.223 1.00 99.90 C ATOM 2689 C THR 371 10.337 24.534 59.092 1.00 99.90 C ATOM 2690 O THR 371 9.643 24.316 60.084 1.00 99.90 O ATOM 2691 CB THR 371 11.974 26.351 59.099 1.00 99.90 C ATOM 2692 OG1 THR 371 11.338 27.012 60.183 1.00 99.90 O ATOM 2693 CG2 THR 371 11.398 26.835 57.758 1.00 99.90 C ATOM 2694 N ASN 372 9.849 24.478 57.837 1.00 99.90 N ATOM 2695 CA ASN 372 8.475 24.185 57.556 1.00 99.90 C ATOM 2696 C ASN 372 8.472 23.493 56.233 1.00 99.90 C ATOM 2697 O ASN 372 9.507 23.006 55.785 1.00 99.90 O ATOM 2698 CB ASN 372 7.598 25.440 57.412 1.00 99.90 C ATOM 2699 CG ASN 372 7.530 26.127 58.769 1.00 99.90 C ATOM 2700 OD1 ASN 372 7.368 25.479 59.801 1.00 99.90 O ATOM 2701 ND2 ASN 372 7.667 27.479 58.771 1.00 99.90 N ATOM 2702 N GLY 373 7.297 23.412 55.576 1.00 99.90 N ATOM 2703 CA GLY 373 7.270 22.795 54.283 1.00 99.90 C ATOM 2704 C GLY 373 8.199 23.619 53.450 1.00 99.90 C ATOM 2705 O GLY 373 8.330 24.820 53.677 1.00 99.90 O ATOM 2706 N TYR 374 8.867 23.009 52.449 1.00 99.90 N ATOM 2707 CA TYR 374 9.884 23.779 51.790 1.00 99.90 C ATOM 2708 C TYR 374 9.853 23.648 50.298 1.00 99.90 C ATOM 2709 O TYR 374 9.130 22.855 49.696 1.00 99.90 O ATOM 2710 CB TYR 374 11.298 23.408 52.272 1.00 99.90 C ATOM 2711 CG TYR 374 11.448 21.928 52.157 1.00 99.90 C ATOM 2712 CD1 TYR 374 11.747 21.332 50.954 1.00 99.90 C ATOM 2713 CD2 TYR 374 11.291 21.128 53.265 1.00 99.90 C ATOM 2714 CE1 TYR 374 11.887 19.968 50.854 1.00 99.90 C ATOM 2715 CE2 TYR 374 11.429 19.763 53.176 1.00 99.90 C ATOM 2716 CZ TYR 374 11.727 19.180 51.967 1.00 99.90 C ATOM 2717 OH TYR 374 11.869 17.780 51.871 1.00 99.90 H ATOM 2718 N PRO 375 10.648 24.532 49.738 1.00 99.90 N ATOM 2719 CA PRO 375 10.894 24.638 48.322 1.00 99.90 C ATOM 2720 C PRO 375 11.832 23.551 47.903 1.00 99.90 C ATOM 2721 O PRO 375 12.365 22.859 48.768 1.00 99.90 O ATOM 2722 CB PRO 375 11.447 26.045 48.084 1.00 99.90 C ATOM 2723 CG PRO 375 11.868 26.539 49.476 1.00 99.90 C ATOM 2724 CD PRO 375 10.928 25.782 50.424 1.00 99.90 C ATOM 2725 N ILE 376 12.067 23.398 46.585 1.00 99.90 N ATOM 2726 CA ILE 376 12.826 22.290 46.074 1.00 99.90 C ATOM 2727 C ILE 376 14.228 22.251 46.614 1.00 99.90 C ATOM 2728 O ILE 376 14.956 23.243 46.583 1.00 99.90 O ATOM 2729 CB ILE 376 12.918 22.273 44.578 1.00 99.90 C ATOM 2730 CG1 ILE 376 11.513 22.163 43.959 1.00 99.90 C ATOM 2731 CG2 ILE 376 13.853 21.121 44.177 1.00 99.90 C ATOM 2732 CD1 ILE 376 11.488 22.413 42.453 1.00 99.90 C ATOM 2733 N PHE 377 14.611 21.066 47.151 1.00 99.90 N ATOM 2734 CA PHE 377 15.931 20.747 47.639 1.00 99.90 C ATOM 2735 C PHE 377 15.887 19.283 48.026 1.00 99.90 C ATOM 2736 O PHE 377 14.800 18.712 48.058 1.00 99.90 O ATOM 2737 CB PHE 377 16.347 21.557 48.880 1.00 99.90 C ATOM 2738 CG PHE 377 17.764 21.216 49.189 1.00 99.90 C ATOM 2739 CD1 PHE 377 18.784 21.744 48.431 1.00 99.90 C ATOM 2740 CD2 PHE 377 18.079 20.386 50.242 1.00 99.90 C ATOM 2741 CE1 PHE 377 20.097 21.439 48.708 1.00 99.90 C ATOM 2742 CE2 PHE 377 19.390 20.078 50.521 1.00 99.90 C ATOM 2743 CZ PHE 377 20.400 20.602 49.754 1.00 99.90 C ATOM 2744 N GLN 378 17.043 18.615 48.301 1.00 99.90 N ATOM 2745 CA GLN 378 16.989 17.214 48.683 1.00 99.90 C ATOM 2746 C GLN 378 18.251 16.797 49.414 1.00 99.90 C ATOM 2747 O GLN 378 19.309 17.368 49.160 1.00 99.90 O ATOM 2748 CB GLN 378 16.857 16.269 47.475 1.00 99.90 C ATOM 2749 CG GLN 378 18.077 16.310 46.553 1.00 99.90 C ATOM 2750 CD GLN 378 17.839 15.342 45.403 1.00 99.90 C ATOM 2751 OE1 GLN 378 18.691 15.166 44.534 1.00 99.90 O ATOM 2752 NE2 GLN 378 16.645 14.692 45.395 1.00 99.90 N ATOM 2753 N TRP 379 18.179 15.790 50.342 1.00 99.90 N ATOM 2754 CA TRP 379 19.366 15.345 51.055 1.00 99.90 C ATOM 2755 C TRP 379 19.122 14.046 51.792 1.00 99.90 C ATOM 2756 O TRP 379 17.989 13.607 51.960 1.00 99.90 O ATOM 2757 CB TRP 379 19.855 16.380 52.088 1.00 99.90 C ATOM 2758 CG TRP 379 21.098 15.988 52.855 1.00 99.90 C ATOM 2759 CD1 TRP 379 21.214 15.331 54.043 1.00 99.90 C ATOM 2760 CD2 TRP 379 22.435 16.277 52.417 1.00 99.90 C ATOM 2761 NE1 TRP 379 22.541 15.190 54.375 1.00 99.90 N ATOM 2762 CE2 TRP 379 23.304 15.768 53.382 1.00 99.90 C ATOM 2763 CE3 TRP 379 22.901 16.915 51.303 1.00 99.90 C ATOM 2764 CZ2 TRP 379 24.657 15.889 53.246 1.00 99.90 C ATOM 2765 CZ3 TRP 379 24.266 17.036 51.169 1.00 99.90 C ATOM 2766 CH2 TRP 379 25.127 16.532 52.122 1.00 99.90 H ATOM 2767 N SER 380 20.217 13.378 52.230 1.00 99.90 N ATOM 2768 CA SER 380 20.188 12.163 53.008 1.00 99.90 C ATOM 2769 C SER 380 21.449 12.180 53.805 1.00 99.90 C ATOM 2770 O SER 380 22.490 12.609 53.314 1.00 99.90 O ATOM 2771 CB SER 380 20.244 10.903 52.128 1.00 99.90 C ATOM 2772 OG SER 380 21.463 10.868 51.400 1.00 99.90 O ATOM 2773 N GLU 381 21.403 11.705 55.062 1.00 99.90 N ATOM 2774 CA GLU 381 22.604 11.710 55.840 1.00 99.90 C ATOM 2775 C GLU 381 23.487 10.598 55.300 1.00 99.90 C ATOM 2776 O GLU 381 23.113 10.017 54.248 1.00 99.90 O ATOM 2777 CB GLU 381 22.372 11.443 57.334 1.00 99.90 C ATOM 2778 CG GLU 381 21.576 12.539 58.037 1.00 99.90 C ATOM 2779 CD GLU 381 21.436 12.124 59.490 1.00 99.90 C ATOM 2780 OE1 GLU 381 20.646 12.783 60.216 1.00 99.90 O ATOM 2781 OE2 GLU 381 22.117 11.142 59.896 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 98.61 40.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 107.40 36.4 22 100.0 22 ARMSMC SURFACE . . . . . . . . 100.88 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 86.34 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.06 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 96.85 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 91.94 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 98.40 34.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 95.40 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.29 59.1 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 44.20 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 54.78 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 51.82 60.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 45.71 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.02 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 54.74 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 36.06 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 78.02 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.15 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 80.15 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.15 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.25 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.25 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3307 CRMSCA SECONDARY STRUCTURE . . 10.93 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.65 26 100.0 26 CRMSCA BURIED . . . . . . . . 12.94 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.26 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 10.75 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.78 129 100.0 129 CRMSMC BURIED . . . . . . . . 12.64 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.74 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.66 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 11.77 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.31 119 99.2 120 CRMSSC BURIED . . . . . . . . 16.04 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.00 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 11.22 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.61 223 99.6 224 CRMSALL BURIED . . . . . . . . 13.53 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.585 0.832 0.847 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 89.605 0.815 0.832 11 100.0 11 ERRCA SURFACE . . . . . . . . 91.151 0.842 0.855 26 100.0 26 ERRCA BURIED . . . . . . . . 87.640 0.784 0.806 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.573 0.832 0.847 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 89.850 0.819 0.836 54 100.0 54 ERRMC SURFACE . . . . . . . . 91.038 0.840 0.854 129 100.0 129 ERRMC BURIED . . . . . . . . 87.965 0.789 0.811 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 89.138 0.809 0.828 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 89.262 0.811 0.830 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 88.877 0.804 0.823 41 100.0 41 ERRSC SURFACE . . . . . . . . 89.550 0.815 0.833 119 99.2 120 ERRSC BURIED . . . . . . . . 84.236 0.730 0.763 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 89.882 0.821 0.838 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 89.389 0.812 0.830 85 100.0 85 ERRALL SURFACE . . . . . . . . 90.262 0.827 0.843 223 99.6 224 ERRALL BURIED . . . . . . . . 87.055 0.775 0.799 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 5 19 31 31 DISTCA CA (P) 0.00 0.00 6.45 16.13 61.29 31 DISTCA CA (RMS) 0.00 0.00 2.61 3.52 6.84 DISTCA ALL (N) 0 3 10 35 129 253 254 DISTALL ALL (P) 0.00 1.18 3.94 13.78 50.79 254 DISTALL ALL (RMS) 0.00 1.65 2.22 3.42 6.55 DISTALL END of the results output