####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS236_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS236_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 357 - 374 4.97 11.87 LCS_AVERAGE: 53.28 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 1.92 15.96 LCS_AVERAGE: 18.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 362 - 366 0.90 14.89 LCS_AVERAGE: 12.59 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 4 4 17 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT A 352 A 352 4 4 17 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT E 353 E 353 4 4 17 3 4 4 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT E 354 E 354 4 5 17 3 4 5 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT L 355 L 355 4 5 17 3 4 5 5 5 6 6 8 11 16 18 19 19 21 22 23 23 23 24 25 LCS_GDT G 356 G 356 4 5 17 3 4 5 5 5 6 6 8 9 9 11 12 13 16 18 19 21 22 24 25 LCS_GDT N 357 N 357 4 5 18 3 4 5 5 5 6 6 8 11 15 18 19 19 20 22 23 23 23 24 25 LCS_GDT I 358 I 358 4 5 18 3 3 5 5 5 6 7 11 12 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT I 359 I 359 3 4 18 3 3 3 4 6 6 8 11 12 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT V 360 V 360 3 4 18 3 3 5 6 6 7 8 8 11 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT A 361 A 361 3 4 18 3 3 5 6 6 7 10 10 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT W 362 W 362 5 5 18 2 4 5 6 6 8 9 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT N 363 N 363 5 5 18 1 3 5 5 7 9 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT P 364 P 364 5 5 18 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT N 365 N 365 5 5 18 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT L 366 L 366 5 5 18 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT W 367 W 367 3 6 18 3 3 4 5 6 7 8 9 12 13 16 18 20 21 22 23 23 23 24 25 LCS_GDT K 368 K 368 3 6 18 3 3 4 4 5 7 8 9 12 14 16 18 20 21 22 23 23 23 24 25 LCS_GDT K 369 K 369 4 6 18 3 3 4 5 6 7 8 10 12 14 17 18 20 21 22 23 23 23 24 25 LCS_GDT G 370 G 370 4 6 18 3 3 4 5 6 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT T 371 T 371 4 8 18 3 4 5 7 7 7 8 9 12 15 17 18 20 21 22 23 23 23 24 25 LCS_GDT N 372 N 372 4 8 18 3 4 5 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT G 373 G 373 4 8 18 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 LCS_GDT Y 374 Y 374 4 8 18 3 4 5 7 7 8 10 10 11 15 17 19 19 20 22 23 23 23 24 25 LCS_GDT P 375 P 375 4 8 14 3 4 5 7 7 8 8 9 9 10 13 15 17 18 18 19 21 23 24 25 LCS_GDT I 376 I 376 4 8 12 3 4 5 7 7 8 8 9 9 9 12 12 15 16 18 19 19 20 21 22 LCS_GDT F 377 F 377 4 8 12 3 4 5 7 7 8 8 9 9 9 10 11 12 16 18 19 19 20 20 22 LCS_GDT Q 378 Q 378 4 8 12 3 4 4 6 6 8 8 9 9 9 10 11 14 16 18 19 19 20 20 22 LCS_GDT W 379 W 379 3 7 12 3 3 5 6 6 8 8 9 9 9 10 11 14 16 18 19 19 20 20 22 LCS_GDT S 380 S 380 3 7 12 3 3 4 4 6 8 8 9 9 9 10 11 11 12 13 15 19 20 20 22 LCS_GDT E 381 E 381 3 5 12 0 3 4 4 6 7 8 9 9 9 10 11 11 12 12 15 18 18 20 22 LCS_AVERAGE LCS_A: 28.23 ( 12.59 18.83 53.28 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 6 7 8 10 11 11 13 16 18 19 20 21 22 23 23 23 24 25 GDT PERCENT_AT 9.68 12.90 19.35 22.58 25.81 32.26 35.48 35.48 41.94 51.61 58.06 61.29 64.52 67.74 70.97 74.19 74.19 74.19 77.42 80.65 GDT RMS_LOCAL 0.05 0.49 0.88 1.31 1.46 2.01 2.22 2.22 2.82 3.56 4.03 4.26 4.24 4.41 4.63 4.87 4.87 4.87 5.26 5.69 GDT RMS_ALL_AT 18.90 11.65 12.05 11.50 11.79 12.13 11.98 11.98 11.89 11.64 11.36 11.16 12.16 12.05 11.89 11.73 11.73 11.73 11.58 11.40 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.252 0 0.061 0.589 2.546 71.190 76.111 LGA A 352 A 352 1.772 0 0.089 0.087 2.982 86.429 80.571 LGA E 353 E 353 2.301 0 0.436 1.419 4.271 60.119 57.725 LGA E 354 E 354 2.603 0 0.599 1.104 6.902 47.619 36.720 LGA L 355 L 355 7.798 0 0.026 1.380 11.120 8.452 4.464 LGA G 356 G 356 11.662 0 0.406 0.406 11.662 0.119 0.119 LGA N 357 N 357 7.655 0 0.609 0.610 9.480 8.333 8.810 LGA I 358 I 358 7.274 0 0.560 0.651 10.324 7.976 5.000 LGA I 359 I 359 7.176 0 0.607 1.516 10.010 10.952 7.798 LGA V 360 V 360 6.681 0 0.101 0.232 8.506 13.214 12.857 LGA A 361 A 361 4.902 0 0.721 0.650 6.932 26.905 25.810 LGA W 362 W 362 5.676 0 0.646 1.262 14.515 30.595 9.558 LGA N 363 N 363 3.346 0 0.283 0.590 5.893 52.262 45.119 LGA P 364 P 364 1.230 0 0.663 0.646 3.597 72.024 71.293 LGA N 365 N 365 1.557 0 0.240 0.232 3.184 75.119 67.143 LGA L 366 L 366 1.764 0 0.576 0.936 7.753 69.048 44.405 LGA W 367 W 367 5.740 0 0.088 1.087 15.205 21.429 6.497 LGA K 368 K 368 6.980 0 0.496 0.906 7.807 16.190 13.175 LGA K 369 K 369 5.882 0 0.033 1.498 7.374 31.429 20.265 LGA G 370 G 370 2.645 0 0.038 0.038 5.488 40.952 40.952 LGA T 371 T 371 6.195 0 0.639 0.574 10.098 27.857 17.279 LGA N 372 N 372 1.861 0 0.324 1.009 3.990 61.905 58.750 LGA G 373 G 373 2.956 0 0.636 0.636 6.259 49.048 49.048 LGA Y 374 Y 374 8.577 0 0.224 1.179 10.117 5.000 9.921 LGA P 375 P 375 13.171 0 0.138 0.299 14.803 0.000 0.000 LGA I 376 I 376 16.504 0 0.100 0.241 18.618 0.000 0.000 LGA F 377 F 377 21.463 0 0.044 0.351 24.145 0.000 0.000 LGA Q 378 Q 378 23.714 0 0.605 0.860 25.491 0.000 0.000 LGA W 379 W 379 26.119 0 0.585 1.027 30.355 0.000 0.000 LGA S 380 S 380 25.898 0 0.536 0.548 28.191 0.000 0.000 LGA E 381 E 381 29.788 1 0.546 0.915 33.026 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.743 9.711 10.776 28.844 24.819 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.22 36.290 33.642 0.474 LGA_LOCAL RMSD: 2.220 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.984 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.743 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.466718 * X + -0.558354 * Y + 0.685868 * Z + 4.634838 Y_new = -0.649181 * X + -0.742948 * Y + -0.163068 * Z + 25.434118 Z_new = 0.600614 * X + -0.369146 * Y + -0.709221 * Z + 18.555822 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.947476 -0.644269 -2.661684 [DEG: -54.2864 -36.9139 -152.5032 ] ZXZ: 1.337376 2.359188 2.121892 [DEG: 76.6260 135.1715 121.5755 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS236_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS236_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.22 33.642 9.74 REMARK ---------------------------------------------------------- MOLECULE T0537TS236_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 4.294 14.334 49.886 1.00 31.97 N ATOM 2530 CA SER 351 4.319 14.203 51.293 1.00 36.98 C ATOM 2531 C SER 351 5.183 15.307 51.775 1.00 39.87 C ATOM 2532 O SER 351 6.091 15.749 51.074 1.00 38.63 O ATOM 2533 CB SER 351 4.919 12.863 51.753 1.00 39.94 C ATOM 2534 OG SER 351 4.928 12.780 53.168 1.00 46.63 O ATOM 2535 N ALA 352 4.901 15.804 52.990 1.00 44.67 N ATOM 2536 CA ALA 352 5.809 16.752 53.541 1.00 47.90 C ATOM 2537 C ALA 352 7.051 15.946 53.641 1.00 48.47 C ATOM 2538 O ALA 352 8.159 16.429 53.420 1.00 50.21 O ATOM 2539 CB ALA 352 5.417 17.205 54.957 1.00 51.49 C ATOM 2540 N GLU 353 6.838 14.657 53.966 1.00 47.85 N ATOM 2541 CA GLU 353 7.831 13.643 54.098 1.00 48.94 C ATOM 2542 C GLU 353 7.768 12.856 52.831 1.00 44.67 C ATOM 2543 O GLU 353 7.791 13.433 51.747 1.00 43.51 O ATOM 2544 CB GLU 353 7.562 12.674 55.266 1.00 52.39 C ATOM 2545 CG GLU 353 7.736 13.295 56.656 1.00 54.95 C ATOM 2546 CD GLU 353 6.488 14.094 57.002 1.00 58.90 C ATOM 2547 OE1 GLU 353 5.539 14.103 56.174 1.00 61.82 O ATOM 2548 OE2 GLU 353 6.464 14.704 58.106 1.00 62.19 O ATOM 2549 N GLU 354 7.725 11.511 52.936 1.00 44.10 N ATOM 2550 CA GLU 354 7.708 10.677 51.767 1.00 40.82 C ATOM 2551 C GLU 354 6.717 9.577 51.974 1.00 36.70 C ATOM 2552 O GLU 354 6.230 9.350 53.078 1.00 38.46 O ATOM 2553 CB GLU 354 9.055 9.985 51.502 1.00 42.87 C ATOM 2554 CG GLU 354 10.195 10.941 51.150 1.00 47.74 C ATOM 2555 CD GLU 354 10.097 11.281 49.671 1.00 49.57 C ATOM 2556 OE1 GLU 354 9.032 10.996 49.063 1.00 50.98 O ATOM 2557 OE2 GLU 354 11.091 11.829 49.125 1.00 53.56 O ATOM 2558 N LEU 355 6.405 8.850 50.886 1.00 33.04 N ATOM 2559 CA LEU 355 5.403 7.831 50.914 1.00 30.00 C ATOM 2560 C LEU 355 5.762 6.673 51.779 1.00 28.73 C ATOM 2561 O LEU 355 4.897 6.137 52.462 1.00 30.57 O ATOM 2562 CB LEU 355 5.051 7.226 49.552 1.00 28.19 C ATOM 2563 CG LEU 355 3.810 6.333 49.713 1.00 26.83 C ATOM 2564 CD1 LEU 355 2.576 7.192 50.021 1.00 31.83 C ATOM 2565 CD2 LEU 355 3.591 5.381 48.535 1.00 26.29 C ATOM 2566 N GLY 356 7.033 6.244 51.796 1.00 26.47 N ATOM 2567 CA GLY 356 7.353 5.073 52.558 1.00 25.31 C ATOM 2568 C GLY 356 7.401 5.515 53.977 1.00 24.77 C ATOM 2569 O GLY 356 6.409 6.025 54.495 1.00 26.80 O ATOM 2570 N ASN 357 8.538 5.306 54.661 1.00 25.96 N ATOM 2571 CA ASN 357 8.615 5.753 56.019 1.00 25.61 C ATOM 2572 C ASN 357 8.382 7.228 55.967 1.00 25.93 C ATOM 2573 O ASN 357 8.511 7.842 54.911 1.00 26.11 O ATOM 2574 CB ASN 357 9.964 5.456 56.689 1.00 26.69 C ATOM 2575 CG ASN 357 10.067 3.938 56.807 1.00 28.38 C ATOM 2576 OD1 ASN 357 9.082 3.255 57.082 1.00 31.08 O ATOM 2577 ND2 ASN 357 11.291 3.392 56.579 1.00 33.06 N ATOM 2578 N ILE 358 7.988 7.850 57.091 1.00 28.59 N ATOM 2579 CA ILE 358 7.581 9.212 56.933 1.00 30.82 C ATOM 2580 C ILE 358 8.588 10.169 57.481 1.00 30.03 C ATOM 2581 O ILE 358 8.546 10.540 58.654 1.00 32.80 O ATOM 2582 CB ILE 358 6.296 9.466 57.635 1.00 36.71 C ATOM 2583 CG1 ILE 358 5.227 8.496 57.098 1.00 42.41 C ATOM 2584 CG2 ILE 358 5.974 10.956 57.448 1.00 41.59 C ATOM 2585 CD1 ILE 358 4.054 8.254 58.046 1.00 47.88 C ATOM 2586 N ILE 359 9.525 10.587 56.612 1.00 30.11 N ATOM 2587 CA ILE 359 10.470 11.625 56.894 1.00 31.14 C ATOM 2588 C ILE 359 10.817 12.234 55.574 1.00 29.54 C ATOM 2589 O ILE 359 10.963 11.525 54.579 1.00 28.09 O ATOM 2590 CB ILE 359 11.720 11.138 57.568 1.00 32.49 C ATOM 2591 CG1 ILE 359 12.410 10.056 56.730 1.00 36.78 C ATOM 2592 CG2 ILE 359 11.365 10.702 58.994 1.00 39.24 C ATOM 2593 CD1 ILE 359 13.730 9.582 57.337 1.00 43.27 C ATOM 2594 N VAL 360 10.942 13.573 55.518 1.00 31.68 N ATOM 2595 CA VAL 360 11.288 14.187 54.266 1.00 31.23 C ATOM 2596 C VAL 360 12.616 13.617 53.920 1.00 33.11 C ATOM 2597 O VAL 360 12.861 13.102 52.829 1.00 34.38 O ATOM 2598 CB VAL 360 11.505 15.661 54.423 1.00 33.36 C ATOM 2599 CG1 VAL 360 11.862 16.254 53.053 1.00 39.42 C ATOM 2600 CG2 VAL 360 10.287 16.281 55.128 1.00 39.72 C ATOM 2601 N ALA 361 13.518 13.718 54.899 1.00 36.92 N ATOM 2602 CA ALA 361 14.811 13.130 54.824 1.00 40.87 C ATOM 2603 C ALA 361 15.312 13.256 56.217 1.00 44.87 C ATOM 2604 O ALA 361 15.093 14.277 56.865 1.00 45.70 O ATOM 2605 CB ALA 361 15.789 13.871 53.896 1.00 42.54 C ATOM 2606 N TRP 362 15.981 12.217 56.734 1.00 48.75 N ATOM 2607 CA TRP 362 16.437 12.343 58.079 1.00 53.07 C ATOM 2608 C TRP 362 17.886 12.032 58.084 1.00 56.97 C ATOM 2609 O TRP 362 18.322 11.069 57.455 1.00 58.70 O ATOM 2610 CB TRP 362 15.708 11.384 59.041 1.00 57.73 C ATOM 2611 CG TRP 362 16.133 11.453 60.488 1.00 61.21 C ATOM 2612 CD1 TRP 362 16.949 10.606 61.175 1.00 64.88 C ATOM 2613 CD2 TRP 362 15.740 12.479 61.415 1.00 64.52 C ATOM 2614 NE1 TRP 362 17.088 11.031 62.474 1.00 68.56 N ATOM 2615 CE2 TRP 362 16.351 12.185 62.635 1.00 68.44 C ATOM 2616 CE3 TRP 362 14.941 13.576 61.265 1.00 67.04 C ATOM 2617 CZ2 TRP 362 16.170 12.987 63.726 1.00 72.84 C ATOM 2618 CZ3 TRP 362 14.759 14.380 62.369 1.00 72.48 C ATOM 2619 CH2 TRP 362 15.361 14.092 63.576 1.00 74.67 H ATOM 2620 N ASN 363 18.683 12.885 58.755 1.00 59.48 N ATOM 2621 CA ASN 363 20.071 12.579 58.805 1.00 64.58 C ATOM 2622 C ASN 363 20.726 13.667 59.602 1.00 65.76 C ATOM 2623 O ASN 363 20.217 14.777 59.759 1.00 64.94 O ATOM 2624 CB ASN 363 20.663 12.498 57.389 1.00 65.76 C ATOM 2625 CG ASN 363 21.815 11.508 57.304 1.00 71.35 C ATOM 2626 OD1 ASN 363 22.624 11.329 58.209 1.00 74.44 O ATOM 2627 ND2 ASN 363 21.904 10.824 56.132 1.00 75.36 N ATOM 2628 N PRO 364 21.836 13.320 60.162 1.00 69.73 N ATOM 2629 CA PRO 364 22.570 14.288 60.936 1.00 72.15 C ATOM 2630 C PRO 364 23.550 15.126 60.175 1.00 71.93 C ATOM 2631 O PRO 364 23.698 14.954 58.968 1.00 70.11 O ATOM 2632 CB PRO 364 23.233 13.521 62.082 1.00 76.99 C ATOM 2633 CG PRO 364 23.110 12.043 61.692 1.00 78.03 C ATOM 2634 CD PRO 364 21.856 12.021 60.815 1.00 72.96 C ATOM 2635 N ASN 365 24.238 16.025 60.912 1.00 74.36 N ATOM 2636 CA ASN 365 25.275 16.907 60.448 1.00 75.03 C ATOM 2637 C ASN 365 24.769 17.923 59.485 1.00 75.68 C ATOM 2638 O ASN 365 25.506 18.358 58.602 1.00 76.65 O ATOM 2639 CB ASN 365 26.440 16.176 59.759 1.00 74.83 C ATOM 2640 CG ASN 365 27.263 15.480 60.829 1.00 77.25 C ATOM 2641 OD1 ASN 365 27.400 15.980 61.945 1.00 78.65 O ATOM 2642 ND2 ASN 365 27.834 14.295 60.481 1.00 79.56 N ATOM 2643 N LEU 366 23.508 18.353 59.638 1.00 75.87 N ATOM 2644 CA LEU 366 23.009 19.352 58.744 1.00 76.74 C ATOM 2645 C LEU 366 23.293 20.703 59.286 1.00 79.57 C ATOM 2646 O LEU 366 23.419 20.900 60.492 1.00 80.69 O ATOM 2647 CB LEU 366 21.490 19.307 58.511 1.00 75.92 C ATOM 2648 CG LEU 366 20.619 19.209 59.763 1.00 77.29 C ATOM 2649 CD1 LEU 366 20.597 20.533 60.517 1.00 78.28 C ATOM 2650 CD2 LEU 366 19.215 18.693 59.427 1.00 80.04 C ATOM 2651 N TRP 367 23.429 21.672 58.369 1.00 80.82 N ATOM 2652 CA TRP 367 23.600 23.024 58.782 1.00 83.41 C ATOM 2653 C TRP 367 22.714 23.816 57.872 1.00 83.16 C ATOM 2654 O TRP 367 22.737 23.617 56.658 1.00 82.69 O ATOM 2655 CB TRP 367 25.051 23.500 58.601 1.00 85.58 C ATOM 2656 CG TRP 367 25.376 24.817 59.253 1.00 88.52 C ATOM 2657 CD1 TRP 367 25.325 26.079 58.742 1.00 89.98 C ATOM 2658 CD2 TRP 367 25.835 24.944 60.608 1.00 90.83 C ATOM 2659 NE1 TRP 367 25.722 26.987 59.695 1.00 92.04 N ATOM 2660 CE2 TRP 367 26.039 26.302 60.849 1.00 92.43 C ATOM 2661 CE3 TRP 367 26.070 24.007 61.572 1.00 91.75 C ATOM 2662 CZ2 TRP 367 26.482 26.745 62.062 1.00 94.15 C ATOM 2663 CZ3 TRP 367 26.514 24.456 62.797 1.00 93.70 C ATOM 2664 CH2 TRP 367 26.715 25.799 63.037 1.00 94.61 H ATOM 2665 N LYS 368 21.897 24.726 58.438 1.00 83.70 N ATOM 2666 CA LYS 368 21.033 25.552 57.641 1.00 83.84 C ATOM 2667 C LYS 368 20.204 24.655 56.781 1.00 81.36 C ATOM 2668 O LYS 368 20.054 24.887 55.582 1.00 81.06 O ATOM 2669 CB LYS 368 21.839 26.492 56.726 1.00 84.44 C ATOM 2670 CG LYS 368 21.114 27.776 56.322 1.00 87.78 C ATOM 2671 CD LYS 368 21.044 28.800 57.459 1.00 88.59 C ATOM 2672 CE LYS 368 20.574 30.187 57.014 1.00 90.71 C ATOM 2673 NZ LYS 368 20.680 31.144 58.137 1.00 91.70 N ATOM 2674 N LYS 369 19.641 23.594 57.385 1.00 79.45 N ATOM 2675 CA LYS 369 18.882 22.645 56.628 1.00 76.66 C ATOM 2676 C LYS 369 17.473 22.693 57.116 1.00 77.82 C ATOM 2677 O LYS 369 17.219 22.949 58.290 1.00 80.59 O ATOM 2678 CB LYS 369 19.437 21.221 56.825 1.00 73.76 C ATOM 2679 CG LYS 369 18.885 20.157 55.883 1.00 76.05 C ATOM 2680 CD LYS 369 17.416 19.817 56.124 1.00 76.95 C ATOM 2681 CE LYS 369 17.191 18.851 57.289 1.00 77.05 C ATOM 2682 NZ LYS 369 15.747 18.573 57.454 1.00 77.32 N ATOM 2683 N GLY 370 16.507 22.487 56.202 1.00 76.03 N ATOM 2684 CA GLY 370 15.145 22.449 56.622 1.00 77.15 C ATOM 2685 C GLY 370 14.301 22.456 55.402 1.00 74.41 C ATOM 2686 O GLY 370 14.755 22.777 54.305 1.00 71.95 O ATOM 2687 N THR 371 13.036 22.055 55.581 1.00 74.99 N ATOM 2688 CA THR 371 12.073 22.129 54.534 1.00 72.88 C ATOM 2689 C THR 371 11.271 23.337 54.878 1.00 73.77 C ATOM 2690 O THR 371 11.674 24.143 55.716 1.00 74.30 O ATOM 2691 CB THR 371 11.160 20.940 54.466 1.00 73.87 C ATOM 2692 OG1 THR 371 10.491 20.761 55.704 1.00 75.71 O ATOM 2693 CG2 THR 371 11.991 19.695 54.128 1.00 75.60 C ATOM 2694 N ASN 372 10.114 23.518 54.228 1.00 75.11 N ATOM 2695 CA ASN 372 9.339 24.673 54.563 1.00 77.03 C ATOM 2696 C ASN 372 8.980 24.574 56.012 1.00 79.60 C ATOM 2697 O ASN 372 9.126 25.542 56.753 1.00 82.85 O ATOM 2698 CB ASN 372 8.026 24.777 53.772 1.00 78.95 C ATOM 2699 CG ASN 372 8.364 25.013 52.308 1.00 82.69 C ATOM 2700 OD1 ASN 372 8.590 24.063 51.560 1.00 84.09 O ATOM 2701 ND2 ASN 372 8.393 26.305 51.884 1.00 85.99 N ATOM 2702 N GLY 373 8.520 23.392 56.460 1.00 79.72 N ATOM 2703 CA GLY 373 8.174 23.186 57.841 1.00 82.22 C ATOM 2704 C GLY 373 6.799 22.610 57.860 1.00 83.68 C ATOM 2705 O GLY 373 5.835 23.276 57.486 1.00 85.43 O ATOM 2706 N TYR 374 6.657 21.356 58.332 1.00 83.86 N ATOM 2707 CA TYR 374 5.348 20.772 58.284 1.00 85.54 C ATOM 2708 C TYR 374 5.131 19.912 59.488 1.00 86.50 C ATOM 2709 O TYR 374 5.967 19.776 60.380 1.00 86.99 O ATOM 2710 CB TYR 374 5.114 19.824 57.089 1.00 85.50 C ATOM 2711 CG TYR 374 5.244 20.531 55.781 1.00 85.00 C ATOM 2712 CD1 TYR 374 4.406 21.568 55.441 1.00 86.07 C ATOM 2713 CD2 TYR 374 6.182 20.114 54.866 1.00 85.39 C ATOM 2714 CE1 TYR 374 4.522 22.198 54.225 1.00 86.65 C ATOM 2715 CE2 TYR 374 6.303 20.739 53.646 1.00 85.88 C ATOM 2716 CZ TYR 374 5.474 21.786 53.325 1.00 86.22 C ATOM 2717 OH TYR 374 5.592 22.430 52.075 1.00 87.31 H ATOM 2718 N PRO 375 3.942 19.374 59.515 1.00 87.45 N ATOM 2719 CA PRO 375 3.570 18.384 60.488 1.00 88.36 C ATOM 2720 C PRO 375 4.177 17.107 60.005 1.00 87.85 C ATOM 2721 O PRO 375 4.614 17.070 58.858 1.00 87.29 O ATOM 2722 CB PRO 375 2.041 18.373 60.526 1.00 89.78 C ATOM 2723 CG PRO 375 1.613 19.137 59.262 1.00 89.61 C ATOM 2724 CD PRO 375 2.787 20.091 59.006 1.00 88.26 C ATOM 2725 N ILE 376 4.217 16.047 60.833 1.00 88.57 N ATOM 2726 CA ILE 376 4.904 14.862 60.405 1.00 88.17 C ATOM 2727 C ILE 376 3.948 13.724 60.366 1.00 88.67 C ATOM 2728 O ILE 376 2.905 13.748 61.014 1.00 90.12 O ATOM 2729 CB ILE 376 6.024 14.464 61.327 1.00 88.90 C ATOM 2730 CG1 ILE 376 5.477 14.159 62.733 1.00 88.78 C ATOM 2731 CG2 ILE 376 7.096 15.564 61.303 1.00 89.09 C ATOM 2732 CD1 ILE 376 6.516 13.544 63.669 1.00 89.67 C ATOM 2733 N PHE 377 4.274 12.705 59.546 1.00 87.55 N ATOM 2734 CA PHE 377 3.421 11.557 59.480 1.00 87.98 C ATOM 2735 C PHE 377 4.140 10.438 60.170 1.00 88.97 C ATOM 2736 O PHE 377 5.359 10.332 60.059 1.00 88.72 O ATOM 2737 CB PHE 377 3.106 11.038 58.065 1.00 86.18 C ATOM 2738 CG PHE 377 2.455 12.078 57.223 1.00 85.71 C ATOM 2739 CD1 PHE 377 1.170 12.497 57.476 1.00 86.92 C ATOM 2740 CD2 PHE 377 3.127 12.599 56.142 1.00 85.11 C ATOM 2741 CE1 PHE 377 0.581 13.448 56.677 1.00 86.72 C ATOM 2742 CE2 PHE 377 2.544 13.549 55.339 1.00 85.22 C ATOM 2743 CZ PHE 377 1.267 13.977 55.610 1.00 85.56 C ATOM 2744 N GLN 378 3.356 9.593 60.879 1.00 90.31 N ATOM 2745 CA GLN 378 3.660 8.402 61.647 1.00 91.43 C ATOM 2746 C GLN 378 4.996 8.391 62.326 1.00 90.34 C ATOM 2747 O GLN 378 6.047 8.585 61.723 1.00 88.79 O ATOM 2748 CB GLN 378 3.541 7.101 60.835 1.00 93.66 C ATOM 2749 CG GLN 378 2.106 6.736 60.449 1.00 95.04 C ATOM 2750 CD GLN 378 1.455 6.068 61.651 1.00 96.19 C ATOM 2751 OE1 GLN 378 2.083 5.915 62.697 1.00 96.47 O ATOM 2752 NE2 GLN 378 0.168 5.652 61.499 1.00 96.96 N ATOM 2753 N TRP 379 4.992 8.094 63.642 1.00 91.45 N ATOM 2754 CA TRP 379 6.245 8.069 64.332 1.00 91.25 C ATOM 2755 C TRP 379 7.039 6.903 63.850 1.00 90.18 C ATOM 2756 O TRP 379 6.603 5.758 63.949 1.00 90.46 O ATOM 2757 CB TRP 379 6.133 7.948 65.857 1.00 92.88 C ATOM 2758 CG TRP 379 5.572 9.176 66.524 1.00 94.36 C ATOM 2759 CD1 TRP 379 4.712 10.120 66.045 1.00 95.18 C ATOM 2760 CD2 TRP 379 5.914 9.575 67.857 1.00 95.52 C ATOM 2761 NE1 TRP 379 4.489 11.079 67.003 1.00 96.26 N ATOM 2762 CE2 TRP 379 5.226 10.757 68.122 1.00 96.36 C ATOM 2763 CE3 TRP 379 6.739 9.004 68.780 1.00 96.06 C ATOM 2764 CZ2 TRP 379 5.353 11.389 69.326 1.00 97.21 C ATOM 2765 CZ3 TRP 379 6.862 9.640 69.994 1.00 97.08 C ATOM 2766 CH2 TRP 379 6.182 10.810 70.262 1.00 97.47 H ATOM 2767 N SER 380 8.243 7.182 63.308 1.00 89.20 N ATOM 2768 CA SER 380 9.091 6.122 62.857 1.00 88.30 C ATOM 2769 C SER 380 9.442 5.325 64.063 1.00 89.72 C ATOM 2770 O SER 380 9.171 4.129 64.146 1.00 90.88 O ATOM 2771 CB SER 380 10.409 6.627 62.246 1.00 86.75 C ATOM 2772 OG SER 380 10.147 7.359 61.059 1.00 86.15 O ATOM 2773 N GLU 381 10.034 5.997 65.064 1.00 90.56 N ATOM 2774 CA GLU 381 10.395 5.297 66.254 1.00 91.82 C ATOM 2775 C GLU 381 9.148 5.227 67.125 1.00 92.33 C ATOM 2776 O GLU 381 8.705 4.088 67.429 1.00 92.65 O ATOM 2777 CB GLU 381 11.497 5.997 67.063 1.00 92.82 C ATOM 2778 CG GLU 381 11.133 7.417 67.495 1.00 94.32 C ATOM 2779 CD GLU 381 12.293 7.954 68.315 1.00 95.38 C ATOM 2780 OE1 GLU 381 12.823 7.185 69.162 1.00 95.79 O ATOM 2781 OE2 GLU 381 12.670 9.138 68.107 1.00 95.97 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.08 38.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 94.48 36.4 22 100.0 22 ARMSMC SURFACE . . . . . . . . 89.51 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 73.75 60.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.08 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 82.66 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 78.05 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 81.73 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 75.91 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.23 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 86.37 31.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 82.28 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 82.86 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 46.26 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.15 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 50.42 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 16.21 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 48.15 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.48 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.48 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.48 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.74 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.74 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3143 CRMSCA SECONDARY STRUCTURE . . 6.82 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.00 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.29 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.86 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.95 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.13 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.22 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.84 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 12.07 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.06 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.12 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.91 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.86 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.51 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.17 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.20 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 55.526 0.743 0.776 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 30.452 0.684 0.734 11 100.0 11 ERRCA SURFACE . . . . . . . . 57.967 0.752 0.783 26 100.0 26 ERRCA BURIED . . . . . . . . 42.836 0.694 0.740 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 55.773 0.743 0.777 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 31.021 0.686 0.735 54 100.0 54 ERRMC SURFACE . . . . . . . . 58.094 0.750 0.782 129 100.0 129 ERRMC BURIED . . . . . . . . 42.753 0.703 0.747 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 62.711 0.734 0.769 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 63.744 0.736 0.771 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 38.370 0.651 0.704 41 100.0 41 ERRSC SURFACE . . . . . . . . 64.157 0.735 0.770 119 99.2 120 ERRSC BURIED . . . . . . . . 45.501 0.724 0.760 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 59.214 0.739 0.773 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 34.323 0.670 0.721 85 100.0 85 ERRALL SURFACE . . . . . . . . 61.332 0.743 0.776 223 99.6 224 ERRALL BURIED . . . . . . . . 43.466 0.707 0.749 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 6 19 31 31 DISTCA CA (P) 0.00 3.23 6.45 19.35 61.29 31 DISTCA CA (RMS) 0.00 1.72 2.30 3.66 6.53 DISTCA ALL (N) 0 7 18 47 130 253 254 DISTALL ALL (P) 0.00 2.76 7.09 18.50 51.18 254 DISTALL ALL (RMS) 0.00 1.50 2.25 3.61 6.50 DISTALL END of the results output