####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS220_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS220_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 351 - 363 4.84 10.45 LCS_AVERAGE: 39.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 1.88 12.56 LCS_AVERAGE: 18.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 352 - 356 0.16 22.20 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.62 13.35 LCS_AVERAGE: 13.11 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 6 13 3 3 3 3 3 6 10 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT A 352 A 352 5 6 13 5 5 5 7 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT E 353 E 353 5 6 13 5 5 5 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT E 354 E 354 5 6 13 5 5 6 7 8 8 11 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT L 355 L 355 5 6 13 5 5 5 5 5 6 6 6 9 13 15 18 21 21 21 22 23 24 25 25 LCS_GDT G 356 G 356 5 6 13 5 5 5 5 5 6 6 6 8 14 15 18 21 21 21 22 23 24 25 25 LCS_GDT N 357 N 357 3 4 13 3 3 3 3 4 8 8 10 12 16 18 19 21 21 21 22 23 24 25 25 LCS_GDT I 358 I 358 3 4 13 3 4 4 5 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT I 359 I 359 3 4 13 1 4 4 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT V 360 V 360 3 4 13 3 3 4 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT A 361 A 361 3 4 13 0 3 3 5 5 6 6 7 8 11 13 16 18 19 20 22 23 24 25 25 LCS_GDT W 362 W 362 4 4 13 3 3 4 5 5 6 6 7 9 11 13 16 17 19 20 21 23 24 25 25 LCS_GDT N 363 N 363 4 4 13 3 3 4 5 5 6 6 7 9 11 13 16 16 17 20 21 22 24 25 25 LCS_GDT P 364 P 364 4 4 11 3 4 4 4 4 5 6 7 8 11 13 14 15 16 18 18 21 22 24 25 LCS_GDT N 365 N 365 4 4 11 3 4 4 4 4 5 6 7 8 11 13 14 15 16 18 18 20 22 24 25 LCS_GDT L 366 L 366 3 4 11 3 4 4 4 4 5 6 7 8 9 12 14 15 16 18 18 20 22 24 25 LCS_GDT W 367 W 367 3 6 11 3 3 3 4 5 6 6 6 7 8 8 9 11 12 15 15 17 18 20 20 LCS_GDT K 368 K 368 4 6 11 3 4 4 5 5 6 6 6 7 8 8 9 11 12 14 15 17 18 20 20 LCS_GDT K 369 K 369 4 6 11 3 4 4 5 5 6 6 7 8 8 9 9 11 12 15 16 17 18 20 21 LCS_GDT G 370 G 370 4 6 12 3 4 4 5 5 6 6 7 8 11 13 14 15 16 19 21 22 24 25 25 LCS_GDT T 371 T 371 4 8 12 3 4 4 5 7 8 11 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT N 372 N 372 5 8 12 0 5 6 7 8 9 11 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT G 373 G 373 5 8 12 2 5 6 7 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT Y 374 Y 374 5 8 12 3 5 6 7 8 8 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT P 375 P 375 5 8 12 3 5 6 7 8 8 11 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT I 376 I 376 5 8 12 3 5 6 7 8 8 11 14 14 16 18 19 21 21 21 22 23 24 25 25 LCS_GDT F 377 F 377 4 8 12 3 4 5 6 7 9 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT Q 378 Q 378 4 8 12 3 4 5 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT W 379 W 379 4 6 12 3 4 4 5 6 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT S 380 S 380 4 4 12 3 3 4 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_GDT E 381 E 381 4 4 12 3 4 4 6 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 LCS_AVERAGE LCS_A: 23.69 ( 13.11 18.52 39.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 6 7 8 10 12 14 16 17 18 19 21 21 21 22 23 24 25 25 GDT PERCENT_AT 16.13 16.13 19.35 22.58 25.81 32.26 38.71 45.16 51.61 54.84 58.06 61.29 67.74 67.74 67.74 70.97 74.19 77.42 80.65 80.65 GDT RMS_LOCAL 0.16 0.16 0.86 1.02 1.37 2.25 2.52 2.81 3.14 3.34 3.49 3.68 4.08 4.08 4.08 4.59 5.11 5.43 5.91 5.91 GDT RMS_ALL_AT 22.20 22.20 13.34 13.34 13.25 10.01 10.31 11.31 10.52 10.45 10.63 10.64 10.85 10.85 10.85 10.45 10.05 9.87 9.48 9.48 # Checking swapping # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 5.700 0 0.153 0.759 8.656 27.500 21.032 LGA A 352 A 352 1.616 0 0.624 0.593 3.947 69.286 64.095 LGA E 353 E 353 2.063 0 0.034 0.533 6.251 67.262 49.365 LGA E 354 E 354 2.787 0 0.044 0.261 5.727 50.476 39.735 LGA L 355 L 355 6.398 0 0.071 0.893 8.311 16.667 14.405 LGA G 356 G 356 7.148 0 0.228 0.228 8.110 10.476 10.476 LGA N 357 N 357 9.261 0 0.599 0.543 13.102 3.690 1.845 LGA I 358 I 358 6.811 0 0.597 0.914 8.451 9.524 16.429 LGA I 359 I 359 6.871 0 0.596 1.324 7.143 11.667 13.512 LGA V 360 V 360 7.969 0 0.622 0.661 11.452 3.571 6.190 LGA A 361 A 361 13.518 0 0.627 0.563 16.257 0.000 0.000 LGA W 362 W 362 15.883 0 0.644 1.282 19.879 0.000 0.000 LGA N 363 N 363 17.734 0 0.091 0.851 18.558 0.000 0.000 LGA P 364 P 364 21.032 0 0.696 0.749 23.245 0.000 0.000 LGA N 365 N 365 21.676 0 0.672 1.442 27.960 0.000 0.000 LGA L 366 L 366 21.053 0 0.572 1.394 21.237 0.000 0.000 LGA W 367 W 367 22.811 0 0.077 1.115 27.601 0.000 0.000 LGA K 368 K 368 21.574 0 0.413 0.735 22.365 0.000 0.000 LGA K 369 K 369 16.864 0 0.173 1.166 20.395 0.000 0.000 LGA G 370 G 370 10.468 0 0.125 0.125 12.656 1.905 1.905 LGA T 371 T 371 3.928 0 0.591 0.974 6.067 35.476 46.939 LGA N 372 N 372 1.976 0 0.669 1.411 4.352 68.929 59.643 LGA G 373 G 373 1.128 0 0.464 0.464 1.449 83.690 83.690 LGA Y 374 Y 374 2.247 0 0.202 1.332 10.509 61.190 35.357 LGA P 375 P 375 2.459 0 0.063 0.249 2.757 60.952 64.898 LGA I 376 I 376 3.658 0 0.187 0.325 9.387 55.714 32.857 LGA F 377 F 377 1.907 0 0.142 1.046 3.242 70.833 65.628 LGA Q 378 Q 378 3.922 0 0.634 1.215 6.219 39.524 30.688 LGA W 379 W 379 3.224 0 0.622 0.942 12.753 63.095 21.463 LGA S 380 S 380 3.359 0 0.070 0.099 6.232 57.262 45.397 LGA E 381 E 381 3.188 0 0.304 1.129 9.116 42.024 27.095 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.488 8.496 9.649 29.378 24.279 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 2.81 38.710 35.134 0.481 LGA_LOCAL RMSD: 2.810 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.306 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.488 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.386938 * X + 0.767352 * Y + -0.511322 * Z + 45.236507 Y_new = 0.351252 * X + -0.635366 * Y + -0.687701 * Z + 100.535645 Z_new = -0.852585 * X + 0.086495 * Y + -0.515382 * Z + 79.946938 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.737094 1.020911 2.975316 [DEG: 42.2323 58.4939 170.4730 ] ZXZ: -0.639343 2.112249 -1.469692 [DEG: -36.6317 121.0230 -84.2072 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS220_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS220_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 2.81 35.134 8.49 REMARK ---------------------------------------------------------- MOLECULE T0537TS220_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2uve_A ATOM 2529 N SER 351 6.327 19.707 50.302 1.00150.97 N ATOM 2530 CA SER 351 6.768 18.423 49.889 1.00150.97 C ATOM 2531 CB SER 351 8.189 18.077 50.363 1.00150.97 C ATOM 2532 OG SER 351 9.122 18.996 49.815 1.00150.97 O ATOM 2533 C SER 351 5.835 17.523 50.596 1.00150.97 C ATOM 2534 O SER 351 4.882 17.999 51.208 1.00150.97 O ATOM 2535 N ALA 352 6.025 16.202 50.457 1.00 72.82 N ATOM 2536 CA ALA 352 5.249 15.325 51.273 1.00 72.82 C ATOM 2537 CB ALA 352 4.332 14.384 50.474 1.00 72.82 C ATOM 2538 C ALA 352 6.270 14.484 51.953 1.00 72.82 C ATOM 2539 O ALA 352 6.926 13.669 51.313 1.00 72.82 O ATOM 2540 N GLU 353 6.442 14.656 53.275 1.00 88.43 N ATOM 2541 CA GLU 353 7.464 13.904 53.935 1.00 88.43 C ATOM 2542 CB GLU 353 7.715 14.343 55.389 1.00 88.43 C ATOM 2543 CG GLU 353 8.934 13.657 56.014 1.00 88.43 C ATOM 2544 CD GLU 353 9.194 14.285 57.374 1.00 88.43 C ATOM 2545 OE1 GLU 353 8.256 14.277 58.215 1.00 88.43 O ATOM 2546 OE2 GLU 353 10.331 14.784 57.590 1.00 88.43 O ATOM 2547 C GLU 353 7.074 12.467 53.948 1.00 88.43 C ATOM 2548 O GLU 353 7.895 11.592 53.679 1.00 88.43 O ATOM 2549 N GLU 354 5.789 12.192 54.238 1.00 28.88 N ATOM 2550 CA GLU 354 5.311 10.846 54.336 1.00 28.88 C ATOM 2551 CB GLU 354 3.828 10.789 54.736 1.00 28.88 C ATOM 2552 CG GLU 354 3.572 11.312 56.153 1.00 28.88 C ATOM 2553 CD GLU 354 2.078 11.219 56.438 1.00 28.88 C ATOM 2554 OE1 GLU 354 1.328 10.780 55.526 1.00 28.88 O ATOM 2555 OE2 GLU 354 1.667 11.593 57.569 1.00 28.88 O ATOM 2556 C GLU 354 5.459 10.199 52.998 1.00 28.88 C ATOM 2557 O GLU 354 5.891 9.051 52.892 1.00 28.88 O ATOM 2558 N LEU 355 5.124 10.949 51.936 1.00140.73 N ATOM 2559 CA LEU 355 5.181 10.468 50.591 1.00140.73 C ATOM 2560 CB LEU 355 4.585 11.470 49.586 1.00140.73 C ATOM 2561 CG LEU 355 4.415 10.914 48.159 1.00140.73 C ATOM 2562 CD1 LEU 355 5.755 10.747 47.423 1.00140.73 C ATOM 2563 CD2 LEU 355 3.586 9.619 48.180 1.00140.73 C ATOM 2564 C LEU 355 6.619 10.207 50.268 1.00140.73 C ATOM 2565 O LEU 355 6.940 9.348 49.451 1.00140.73 O ATOM 2566 N GLY 356 7.536 10.957 50.905 1.00 38.09 N ATOM 2567 CA GLY 356 8.924 10.744 50.627 1.00 38.09 C ATOM 2568 C GLY 356 9.377 11.842 49.727 1.00 38.09 C ATOM 2569 O GLY 356 10.536 11.880 49.316 1.00 38.09 O ATOM 2570 N ASN 357 8.460 12.766 49.391 1.00 66.42 N ATOM 2571 CA ASN 357 8.840 13.882 48.578 1.00 66.42 C ATOM 2572 CB ASN 357 7.649 14.631 47.955 1.00 66.42 C ATOM 2573 CG ASN 357 7.007 13.728 46.912 1.00 66.42 C ATOM 2574 OD1 ASN 357 7.684 12.931 46.264 1.00 66.42 O ATOM 2575 ND2 ASN 357 5.664 13.850 46.743 1.00 66.42 N ATOM 2576 C ASN 357 9.519 14.835 49.501 1.00 66.42 C ATOM 2577 O ASN 357 8.890 15.423 50.383 1.00 66.42 O ATOM 2578 N ILE 358 10.838 15.014 49.315 1.00148.39 N ATOM 2579 CA ILE 358 11.551 15.810 50.259 1.00148.39 C ATOM 2580 CB ILE 358 12.297 14.912 51.191 1.00148.39 C ATOM 2581 CG2 ILE 358 13.531 14.376 50.445 1.00148.39 C ATOM 2582 CG1 ILE 358 12.602 15.617 52.505 1.00148.39 C ATOM 2583 CD1 ILE 358 11.365 15.881 53.359 1.00148.39 C ATOM 2584 C ILE 358 12.523 16.678 49.517 1.00148.39 C ATOM 2585 O ILE 358 13.016 16.302 48.455 1.00148.39 O ATOM 2586 N ILE 359 12.816 17.874 50.069 1.00165.92 N ATOM 2587 CA ILE 359 13.712 18.824 49.461 1.00165.92 C ATOM 2588 CB ILE 359 12.998 20.109 49.112 1.00165.92 C ATOM 2589 CG2 ILE 359 12.279 20.593 50.383 1.00165.92 C ATOM 2590 CG1 ILE 359 13.915 21.168 48.464 1.00165.92 C ATOM 2591 CD1 ILE 359 14.881 21.873 49.410 1.00165.92 C ATOM 2592 C ILE 359 14.790 19.127 50.451 1.00165.92 C ATOM 2593 O ILE 359 14.549 19.134 51.652 1.00165.92 O ATOM 2594 N VAL 360 16.033 19.358 49.987 1.00108.00 N ATOM 2595 CA VAL 360 17.055 19.669 50.944 1.00108.00 C ATOM 2596 CB VAL 360 17.989 18.530 51.228 1.00108.00 C ATOM 2597 CG1 VAL 360 19.029 19.018 52.249 1.00108.00 C ATOM 2598 CG2 VAL 360 17.181 17.307 51.686 1.00108.00 C ATOM 2599 C VAL 360 17.928 20.767 50.405 1.00108.00 C ATOM 2600 O VAL 360 18.190 20.830 49.206 1.00108.00 O ATOM 2601 N ALA 361 18.372 21.678 51.300 1.00361.57 N ATOM 2602 CA ALA 361 19.376 22.679 51.026 1.00361.57 C ATOM 2603 CB ALA 361 20.431 22.202 50.015 1.00361.57 C ATOM 2604 C ALA 361 18.843 23.998 50.513 1.00361.57 C ATOM 2605 O ALA 361 18.192 24.034 49.469 1.00361.57 O ATOM 2606 N TRP 362 19.180 25.116 51.233 1.00308.42 N ATOM 2607 CA TRP 362 18.879 26.506 50.887 1.00308.42 C ATOM 2608 CB TRP 362 17.385 26.733 50.602 1.00308.42 C ATOM 2609 CG TRP 362 17.011 28.172 50.351 1.00308.42 C ATOM 2610 CD2 TRP 362 17.140 28.841 49.087 1.00308.42 C ATOM 2611 CD1 TRP 362 16.509 29.090 51.226 1.00308.42 C ATOM 2612 NE1 TRP 362 16.312 30.289 50.587 1.00308.42 N ATOM 2613 CE2 TRP 362 16.698 30.152 49.271 1.00308.42 C ATOM 2614 CE3 TRP 362 17.591 28.404 47.875 1.00308.42 C ATOM 2615 CZ2 TRP 362 16.699 31.047 48.239 1.00308.42 C ATOM 2616 CZ3 TRP 362 17.589 29.311 46.837 1.00308.42 C ATOM 2617 CH2 TRP 362 17.152 30.606 47.017 1.00308.42 C ATOM 2618 C TRP 362 19.266 27.469 52.056 1.00308.42 C ATOM 2619 O TRP 362 19.252 26.976 53.182 1.00308.42 O ATOM 2620 N ASN 363 19.603 28.824 51.858 1.00294.20 N ATOM 2621 CA ASN 363 19.984 29.786 52.939 1.00294.20 C ATOM 2622 CB ASN 363 21.380 29.525 53.517 1.00294.20 C ATOM 2623 CG ASN 363 21.261 28.341 54.435 1.00294.20 C ATOM 2624 OD1 ASN 363 20.685 28.437 55.516 1.00294.20 O ATOM 2625 ND2 ASN 363 21.787 27.181 53.975 1.00294.20 N ATOM 2626 C ASN 363 20.077 31.296 52.622 1.00294.20 C ATOM 2627 O ASN 363 21.064 31.752 52.039 1.00294.20 O ATOM 2628 N PRO 364 19.122 32.127 53.003 1.00160.96 N ATOM 2629 CA PRO 364 19.325 33.570 52.892 1.00160.96 C ATOM 2630 CD PRO 364 17.766 31.762 52.619 1.00160.96 C ATOM 2631 CB PRO 364 18.098 34.108 52.156 1.00160.96 C ATOM 2632 CG PRO 364 16.999 33.083 52.477 1.00160.96 C ATOM 2633 C PRO 364 19.462 34.209 54.257 1.00160.96 C ATOM 2634 O PRO 364 19.318 33.511 55.259 1.00160.96 O ATOM 2635 N ASN 365 19.722 35.539 54.329 1.00125.46 N ATOM 2636 CA ASN 365 19.664 36.231 55.592 1.00125.46 C ATOM 2637 CB ASN 365 20.872 37.141 55.904 1.00125.46 C ATOM 2638 CG ASN 365 20.975 38.274 54.889 1.00125.46 C ATOM 2639 OD1 ASN 365 21.321 38.071 53.728 1.00125.46 O ATOM 2640 ND2 ASN 365 20.679 39.520 55.345 1.00125.46 N ATOM 2641 C ASN 365 18.423 37.058 55.499 1.00125.46 C ATOM 2642 O ASN 365 18.263 37.849 54.570 1.00125.46 O ATOM 2643 N LEU 366 17.492 36.886 56.460 1.00 73.22 N ATOM 2644 CA LEU 366 16.216 37.509 56.284 1.00 73.22 C ATOM 2645 CB LEU 366 15.078 36.476 56.195 1.00 73.22 C ATOM 2646 CG LEU 366 15.258 35.433 55.075 1.00 73.22 C ATOM 2647 CD1 LEU 366 14.089 34.436 55.042 1.00 73.22 C ATOM 2648 CD2 LEU 366 15.497 36.107 53.716 1.00 73.22 C ATOM 2649 C LEU 366 15.866 38.374 57.451 1.00 73.22 C ATOM 2650 O LEU 366 16.217 38.092 58.595 1.00 73.22 O ATOM 2651 N TRP 367 15.157 39.478 57.150 1.00111.79 N ATOM 2652 CA TRP 367 14.597 40.324 58.158 1.00111.79 C ATOM 2653 CB TRP 367 15.063 41.791 58.114 1.00111.79 C ATOM 2654 CG TRP 367 16.441 42.041 58.672 1.00111.79 C ATOM 2655 CD2 TRP 367 17.652 42.115 57.904 1.00111.79 C ATOM 2656 CD1 TRP 367 16.793 42.287 59.967 1.00111.79 C ATOM 2657 NE1 TRP 367 18.144 42.506 60.054 1.00111.79 N ATOM 2658 CE2 TRP 367 18.688 42.404 58.794 1.00111.79 C ATOM 2659 CE3 TRP 367 17.884 41.960 56.570 1.00111.79 C ATOM 2660 CZ2 TRP 367 19.975 42.544 58.360 1.00111.79 C ATOM 2661 CZ3 TRP 367 19.185 42.099 56.141 1.00111.79 C ATOM 2662 CH2 TRP 367 20.212 42.385 57.015 1.00111.79 C ATOM 2663 C TRP 367 13.127 40.322 57.906 1.00111.79 C ATOM 2664 O TRP 367 12.695 40.400 56.757 1.00111.79 O ATOM 2665 N LYS 368 12.325 40.246 58.987 0.50 95.23 N ATOM 2666 CA LYS 368 10.893 40.212 58.867 0.50 95.23 C ATOM 2667 CB LYS 368 10.280 41.559 58.448 0.50 95.23 C ATOM 2668 CG LYS 368 10.481 42.654 59.499 0.50 95.23 C ATOM 2669 CD LYS 368 10.113 44.052 59.003 1.00 95.23 C ATOM 2670 CE LYS 368 10.961 44.529 57.823 1.00 95.23 C ATOM 2671 NZ LYS 368 10.428 45.806 57.302 1.00 95.23 N ATOM 2672 C LYS 368 10.515 39.163 57.868 0.50 95.23 C ATOM 2673 O LYS 368 9.967 39.467 56.811 0.50 95.23 O ATOM 2674 N LYS 369 10.833 37.893 58.195 1.00153.47 N ATOM 2675 CA LYS 369 10.612 36.744 57.354 1.00153.47 C ATOM 2676 CB LYS 369 11.924 36.012 57.042 1.00153.47 C ATOM 2677 CG LYS 369 12.573 35.501 58.334 1.00153.47 C ATOM 2678 CD LYS 369 13.738 34.529 58.147 1.00153.47 C ATOM 2679 CE LYS 369 14.275 33.991 59.476 1.00153.47 C ATOM 2680 NZ LYS 369 14.544 35.114 60.403 1.00153.47 N ATOM 2681 C LYS 369 9.794 35.728 58.120 1.00153.47 C ATOM 2682 O LYS 369 9.294 36.021 59.206 1.00153.47 O ATOM 2683 N GLY 370 9.654 34.498 57.545 1.00 89.05 N ATOM 2684 CA GLY 370 8.906 33.379 58.102 1.00 89.05 C ATOM 2685 C GLY 370 9.732 32.087 58.037 1.00 89.05 C ATOM 2686 O GLY 370 10.924 32.146 57.745 1.00 89.05 O ATOM 2687 N THR 371 9.096 30.893 58.292 1.00115.67 N ATOM 2688 CA THR 371 9.682 29.552 58.453 1.00115.67 C ATOM 2689 CB THR 371 8.919 28.764 59.497 1.00115.67 C ATOM 2690 OG1 THR 371 8.774 29.569 60.658 1.00115.67 O ATOM 2691 CG2 THR 371 9.701 27.506 59.921 1.00115.67 C ATOM 2692 C THR 371 9.748 28.757 57.125 1.00115.67 C ATOM 2693 O THR 371 9.577 29.361 56.070 1.00115.67 O ATOM 2694 N ASN 372 10.007 27.395 57.140 1.00123.98 N ATOM 2695 CA ASN 372 10.260 26.525 55.973 1.00123.98 C ATOM 2696 CB ASN 372 11.759 26.225 55.773 1.00123.98 C ATOM 2697 CG ASN 372 12.507 27.514 55.459 1.00123.98 C ATOM 2698 OD1 ASN 372 12.077 28.329 54.645 1.00123.98 O ATOM 2699 ND2 ASN 372 13.675 27.702 56.129 1.00123.98 N ATOM 2700 C ASN 372 9.575 25.121 56.038 1.00123.98 C ATOM 2701 O ASN 372 8.431 25.039 56.482 1.00123.98 O ATOM 2702 N GLY 373 10.266 23.985 55.595 1.00196.81 N ATOM 2703 CA GLY 373 9.809 22.579 55.532 1.00196.81 C ATOM 2704 C GLY 373 10.647 21.742 54.589 1.00196.81 C ATOM 2705 O GLY 373 10.242 21.390 53.479 1.00196.81 O ATOM 2706 N TYR 374 11.853 21.346 55.064 1.00205.98 N ATOM 2707 CA TYR 374 12.718 20.471 54.322 1.00205.98 C ATOM 2708 CB TYR 374 13.341 21.138 53.077 1.00205.98 C ATOM 2709 CG TYR 374 14.136 22.354 53.419 1.00205.98 C ATOM 2710 CD1 TYR 374 13.535 23.588 53.508 1.00205.98 C ATOM 2711 CD2 TYR 374 15.488 22.263 53.639 1.00205.98 C ATOM 2712 CE1 TYR 374 14.278 24.705 53.815 1.00205.98 C ATOM 2713 CE2 TYR 374 16.240 23.370 53.947 1.00205.98 C ATOM 2714 CZ TYR 374 15.630 24.596 54.034 1.00205.98 C ATOM 2715 OH TYR 374 16.393 25.742 54.348 1.00205.98 O ATOM 2716 C TYR 374 13.774 19.939 55.246 1.00205.98 C ATOM 2717 O TYR 374 13.909 20.381 56.385 1.00205.98 O ATOM 2718 N PRO 375 14.505 18.964 54.779 1.00105.78 N ATOM 2719 CA PRO 375 15.571 18.423 55.567 1.00105.78 C ATOM 2720 CD PRO 375 13.850 17.893 54.057 1.00105.78 C ATOM 2721 CB PRO 375 15.926 17.062 54.973 1.00105.78 C ATOM 2722 CG PRO 375 15.006 16.929 53.754 1.00105.78 C ATOM 2723 C PRO 375 16.727 19.334 55.668 1.00105.78 C ATOM 2724 O PRO 375 16.883 20.237 54.846 1.00105.78 O ATOM 2725 N ILE 376 17.569 19.066 56.670 1.00146.71 N ATOM 2726 CA ILE 376 18.651 19.922 57.001 1.00146.71 C ATOM 2727 CB ILE 376 19.418 19.448 58.196 1.00146.71 C ATOM 2728 CG2 ILE 376 18.455 19.438 59.392 1.00146.71 C ATOM 2729 CG1 ILE 376 20.061 18.083 57.912 1.00146.71 C ATOM 2730 CD1 ILE 376 21.063 17.646 58.978 1.00146.71 C ATOM 2731 C ILE 376 19.608 20.086 55.875 1.00146.71 C ATOM 2732 O ILE 376 19.975 19.161 55.152 1.00146.71 O ATOM 2733 N PHE 377 19.981 21.354 55.684 1.00140.36 N ATOM 2734 CA PHE 377 21.050 21.732 54.830 1.00140.36 C ATOM 2735 CB PHE 377 20.650 22.650 53.672 1.00140.36 C ATOM 2736 CG PHE 377 21.880 22.877 52.856 1.00140.36 C ATOM 2737 CD1 PHE 377 22.441 21.842 52.142 1.00140.36 C ATOM 2738 CD2 PHE 377 22.454 24.123 52.777 1.00140.36 C ATOM 2739 CE1 PHE 377 23.569 22.041 51.381 1.00140.36 C ATOM 2740 CE2 PHE 377 23.581 24.326 52.017 1.00140.36 C ATOM 2741 CZ PHE 377 24.145 23.286 51.318 1.00140.36 C ATOM 2742 C PHE 377 21.847 22.538 55.792 1.00140.36 C ATOM 2743 O PHE 377 21.336 22.849 56.866 1.00140.36 O ATOM 2744 N GLN 378 23.112 22.880 55.508 1.00153.01 N ATOM 2745 CA GLN 378 23.696 23.635 56.570 1.00153.01 C ATOM 2746 CB GLN 378 25.229 23.698 56.562 1.00153.01 C ATOM 2747 CG GLN 378 25.781 24.188 57.903 1.00153.01 C ATOM 2748 CD GLN 378 25.380 23.158 58.956 1.00153.01 C ATOM 2749 OE1 GLN 378 24.199 22.878 59.160 1.00153.01 O ATOM 2750 NE2 GLN 378 26.392 22.569 59.647 1.00153.01 N ATOM 2751 C GLN 378 23.134 25.003 56.448 1.00153.01 C ATOM 2752 O GLN 378 23.390 25.702 55.470 1.00153.01 O ATOM 2753 N TRP 379 22.351 25.416 57.461 1.00 90.73 N ATOM 2754 CA TRP 379 21.648 26.656 57.369 1.00 90.73 C ATOM 2755 CB TRP 379 20.255 26.626 58.024 1.00 90.73 C ATOM 2756 CG TRP 379 19.253 25.678 57.406 1.00 90.73 C ATOM 2757 CD2 TRP 379 17.878 25.600 57.818 1.00 90.73 C ATOM 2758 CD1 TRP 379 19.412 24.754 56.414 1.00 90.73 C ATOM 2759 NE1 TRP 379 18.226 24.093 56.197 1.00 90.73 N ATOM 2760 CE2 TRP 379 17.272 24.608 57.049 1.00 90.73 C ATOM 2761 CE3 TRP 379 17.179 26.298 58.762 1.00 90.73 C ATOM 2762 CZ2 TRP 379 15.952 24.298 57.213 1.00 90.73 C ATOM 2763 CZ3 TRP 379 15.847 25.986 58.921 1.00 90.73 C ATOM 2764 CH2 TRP 379 15.247 25.004 58.160 1.00 90.73 C ATOM 2765 C TRP 379 22.403 27.685 58.125 1.00 90.73 C ATOM 2766 O TRP 379 22.806 27.473 59.269 1.00 90.73 O ATOM 2767 N SER 380 22.620 28.839 57.477 1.00 43.29 N ATOM 2768 CA SER 380 23.230 29.939 58.142 1.00 43.29 C ATOM 2769 CB SER 380 24.539 30.408 57.486 1.00 43.29 C ATOM 2770 OG SER 380 25.517 29.383 57.554 1.00 43.29 O ATOM 2771 C SER 380 22.237 31.039 57.993 1.00 43.29 C ATOM 2772 O SER 380 21.663 31.225 56.920 1.00 43.29 O ATOM 2773 N GLU 381 21.982 31.790 59.076 1.00 73.16 N ATOM 2774 CA GLU 381 21.019 32.836 58.944 1.00 73.16 C ATOM 2775 CB GLU 381 20.488 33.354 60.290 1.00 73.16 C ATOM 2776 CG GLU 381 21.567 33.980 61.173 1.00 73.16 C ATOM 2777 CD GLU 381 20.941 34.249 62.533 1.00 73.16 C ATOM 2778 OE1 GLU 381 19.765 33.845 62.731 1.00 73.16 O ATOM 2779 OE2 GLU 381 21.631 34.855 63.395 1.00 73.16 O ATOM 2780 C GLU 381 21.716 33.977 58.221 1.00 73.16 C ATOM 2781 O GLU 381 22.415 33.684 57.216 1.00 73.16 O ATOM 2782 OXT GLU 381 21.564 35.149 58.660 1.00 73.16 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 92.66 33.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 111.58 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.04 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 100.37 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.61 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 97.49 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 73.27 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 98.73 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 67.07 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.04 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 79.29 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 77.92 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 76.05 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 95.65 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.46 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 67.48 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 47.70 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 72.46 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.75 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 90.75 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 90.75 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.49 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.49 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2738 CRMSCA SECONDARY STRUCTURE . . 5.93 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.74 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.07 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.66 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.09 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.92 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.05 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.75 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.94 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 7.00 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.06 120 100.0 120 CRMSSC BURIED . . . . . . . . 5.70 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.72 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 6.58 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.05 224 100.0 224 CRMSALL BURIED . . . . . . . . 6.73 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 127.012 0.854 0.869 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 133.567 0.866 0.881 11 100.0 11 ERRCA SURFACE . . . . . . . . 133.190 0.858 0.871 26 100.0 26 ERRCA BURIED . . . . . . . . 94.883 0.837 0.856 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 127.376 0.853 0.867 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 135.259 0.867 0.882 54 100.0 54 ERRMC SURFACE . . . . . . . . 132.575 0.854 0.868 129 100.0 129 ERRMC BURIED . . . . . . . . 98.218 0.847 0.864 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 130.195 0.835 0.852 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 130.651 0.832 0.850 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 152.555 0.870 0.886 41 100.0 41 ERRSC SURFACE . . . . . . . . 130.610 0.828 0.846 120 100.0 120 ERRSC BURIED . . . . . . . . 125.220 0.915 0.920 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 128.622 0.844 0.860 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 142.600 0.866 0.882 85 100.0 85 ERRALL SURFACE . . . . . . . . 131.795 0.842 0.857 224 100.0 224 ERRALL BURIED . . . . . . . . 104.929 0.863 0.877 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 8 23 31 31 DISTCA CA (P) 0.00 0.00 9.68 25.81 74.19 31 DISTCA CA (RMS) 0.00 0.00 2.76 3.35 6.69 DISTCA ALL (N) 2 6 15 52 160 254 254 DISTALL ALL (P) 0.79 2.36 5.91 20.47 62.99 254 DISTALL ALL (RMS) 0.81 1.19 2.04 3.64 6.89 DISTALL END of the results output