####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 304), selected 31 , name T0537TS214_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS214_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 351 - 369 4.80 12.17 LONGEST_CONTINUOUS_SEGMENT: 19 359 - 377 4.67 12.03 LONGEST_CONTINUOUS_SEGMENT: 19 360 - 378 4.91 11.46 LONGEST_CONTINUOUS_SEGMENT: 19 361 - 379 4.70 10.97 LCS_AVERAGE: 60.15 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.98 12.74 LCS_AVERAGE: 18.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.19 17.69 LONGEST_CONTINUOUS_SEGMENT: 4 371 - 374 0.92 13.65 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.63 21.05 LCS_AVERAGE: 10.72 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 19 0 3 3 3 4 5 5 7 7 9 14 16 16 17 18 20 20 22 23 24 LCS_GDT A 352 A 352 3 4 19 1 3 3 4 5 6 8 11 13 14 15 16 16 17 18 20 20 20 22 23 LCS_GDT E 353 E 353 3 4 19 0 3 3 4 5 7 9 11 13 15 15 16 16 17 18 20 20 23 25 26 LCS_GDT E 354 E 354 3 4 19 0 3 3 4 4 6 7 8 11 15 15 15 16 17 20 21 24 24 25 26 LCS_GDT L 355 L 355 3 4 19 0 3 3 4 4 6 7 8 13 15 15 16 16 17 18 20 21 23 25 26 LCS_GDT G 356 G 356 3 4 19 0 3 3 4 5 7 9 11 13 15 15 16 16 17 18 20 21 23 25 26 LCS_GDT N 357 N 357 3 3 19 1 3 3 4 5 7 9 11 13 15 15 16 16 19 22 22 24 24 25 26 LCS_GDT I 358 I 358 3 5 19 3 3 4 4 5 7 9 11 13 15 15 16 17 19 22 22 24 24 25 26 LCS_GDT I 359 I 359 3 5 19 3 3 4 4 5 7 9 11 13 15 15 16 18 19 22 22 24 24 25 26 LCS_GDT V 360 V 360 3 5 19 3 3 4 4 5 6 7 8 9 12 12 12 15 16 18 20 24 24 25 26 LCS_GDT A 361 A 361 3 5 19 3 3 4 4 5 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT W 362 W 362 3 5 19 3 3 4 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT N 363 N 363 3 4 19 3 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT P 364 P 364 3 4 19 3 4 4 4 8 8 9 11 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT N 365 N 365 3 7 19 3 3 5 6 8 8 9 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT L 366 L 366 4 7 19 4 4 5 6 8 8 9 11 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT W 367 W 367 4 7 19 4 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT K 368 K 368 4 7 19 4 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT K 369 K 369 4 7 19 4 4 5 6 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT G 370 G 370 3 7 19 3 3 5 6 8 8 9 11 13 14 17 17 18 19 22 22 24 24 25 26 LCS_GDT T 371 T 371 4 7 19 3 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT N 372 N 372 4 8 19 3 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT G 373 G 373 4 8 19 3 4 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT Y 374 Y 374 4 8 19 3 4 5 5 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT P 375 P 375 4 8 19 3 4 4 5 8 8 8 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT I 376 I 376 4 8 19 3 4 4 5 8 8 9 12 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT F 377 F 377 3 8 19 3 3 4 5 8 8 8 11 13 15 17 17 18 19 22 22 24 24 25 26 LCS_GDT Q 378 Q 378 3 8 19 3 3 4 5 8 8 8 9 9 10 11 11 17 19 22 22 24 24 25 26 LCS_GDT W 379 W 379 3 8 19 3 3 4 5 8 8 8 9 9 10 11 16 18 19 22 22 24 24 25 26 LCS_GDT S 380 S 380 3 4 14 3 3 4 4 4 4 4 5 8 8 10 11 12 17 18 21 22 23 25 25 LCS_GDT E 381 E 381 3 4 13 3 3 4 4 4 4 4 6 6 7 8 13 16 19 20 21 22 23 25 25 LCS_AVERAGE LCS_A: 29.90 ( 10.72 18.83 60.15 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 7 8 8 10 12 13 15 17 17 18 19 22 22 24 24 25 26 GDT PERCENT_AT 12.90 16.13 16.13 22.58 25.81 25.81 32.26 38.71 41.94 48.39 54.84 54.84 58.06 61.29 70.97 70.97 77.42 77.42 80.65 83.87 GDT RMS_LOCAL 0.19 0.95 0.95 1.50 1.65 1.65 2.28 2.83 3.03 3.41 3.79 3.79 4.24 4.72 5.51 5.51 6.09 6.09 6.14 6.71 GDT RMS_ALL_AT 17.69 14.53 14.53 14.98 15.23 15.23 14.21 13.11 12.99 12.56 12.79 12.79 12.08 10.79 9.49 9.49 8.90 8.90 9.89 8.52 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 27.815 0 0.072 0.710 27.815 0.000 0.000 LGA A 352 A 352 29.174 0 0.585 0.571 31.483 0.000 0.000 LGA E 353 E 353 25.970 0 0.512 1.194 28.300 0.000 0.000 LGA E 354 E 354 23.089 0 0.621 1.085 26.311 0.000 0.000 LGA L 355 L 355 22.968 0 0.623 1.311 24.366 0.000 0.000 LGA G 356 G 356 18.711 0 0.577 0.577 20.751 0.000 0.000 LGA N 357 N 357 14.013 0 0.571 1.268 15.740 0.000 0.000 LGA I 358 I 358 11.871 0 0.597 0.630 18.466 0.833 0.417 LGA I 359 I 359 8.118 0 0.595 0.763 11.284 6.429 5.238 LGA V 360 V 360 9.758 0 0.112 0.169 13.982 1.905 1.088 LGA A 361 A 361 3.448 0 0.190 0.201 4.368 53.571 50.286 LGA W 362 W 362 1.619 0 0.104 1.196 6.299 77.619 51.361 LGA N 363 N 363 1.840 0 0.149 0.899 3.854 71.310 60.833 LGA P 364 P 364 6.278 0 0.710 0.810 8.480 17.976 16.122 LGA N 365 N 365 5.349 0 0.055 0.145 6.989 20.595 22.321 LGA L 366 L 366 6.892 0 0.431 1.353 11.206 15.833 10.000 LGA W 367 W 367 2.778 0 0.059 0.852 9.936 48.690 27.653 LGA K 368 K 368 2.922 0 0.071 0.845 13.687 48.929 26.296 LGA K 369 K 369 3.640 0 0.108 0.844 13.569 53.810 29.048 LGA G 370 G 370 5.802 0 0.144 0.144 5.802 32.024 32.024 LGA T 371 T 371 0.927 0 0.584 0.540 3.793 77.619 72.585 LGA N 372 N 372 0.963 0 0.138 1.216 4.558 81.548 71.071 LGA G 373 G 373 2.007 0 0.221 0.221 3.346 61.190 61.190 LGA Y 374 Y 374 3.285 0 0.282 1.326 15.088 61.429 23.690 LGA P 375 P 375 3.720 0 0.127 0.367 6.995 61.667 43.333 LGA I 376 I 376 4.276 0 0.599 1.285 9.633 32.976 20.238 LGA F 377 F 377 7.015 0 0.595 0.974 9.981 16.548 7.532 LGA Q 378 Q 378 14.191 0 0.093 1.217 17.557 0.000 0.000 LGA W 379 W 379 16.186 0 0.671 1.284 17.750 0.000 0.000 LGA S 380 S 380 14.647 0 0.290 0.708 15.762 0.000 0.000 LGA E 381 E 381 12.066 1 0.675 1.188 12.674 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 8.246 8.125 8.647 27.177 20.398 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.83 37.097 32.411 0.410 LGA_LOCAL RMSD: 2.830 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.108 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.246 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.089967 * X + 0.640674 * Y + 0.762524 * Z + 29.061224 Y_new = -0.185093 * X + 0.741535 * Y + -0.644877 * Z + 9.105135 Z_new = -0.978594 * X + -0.199156 * Y + 0.051871 * Z + 49.310501 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.023230 1.363515 -1.316002 [DEG: -115.9225 78.1237 -75.4013 ] ZXZ: 0.868796 1.518902 -1.771567 [DEG: 49.7784 87.0267 -101.5033 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS214_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS214_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.83 32.411 8.25 REMARK ---------------------------------------------------------- MOLECULE T0537TS214_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 3082 N SER 351 27.253 4.683 64.751 1.00 50.00 N ATOM 3083 CA SER 351 26.920 5.844 65.596 1.00 50.00 C ATOM 3084 C SER 351 26.749 5.256 67.018 1.00 50.00 C ATOM 3085 O SER 351 26.342 4.070 67.051 1.00 50.00 O ATOM 3086 CB SER 351 25.667 6.547 65.072 1.00 50.00 C ATOM 3087 HG SER 351 25.194 7.460 63.516 1.00 50.00 H ATOM 3088 OG SER 351 25.886 7.085 63.780 1.00 50.00 O ATOM 3089 N ALA 352 27.194 6.014 68.016 1.00 50.00 N ATOM 3090 CA ALA 352 27.012 5.603 69.425 1.00 50.00 C ATOM 3091 C ALA 352 26.021 6.524 70.163 1.00 50.00 C ATOM 3092 O ALA 352 25.905 7.692 69.930 1.00 50.00 O ATOM 3093 H ALA 352 27.611 6.788 67.823 1.00 50.00 H ATOM 3094 CB ALA 352 28.348 5.594 70.152 1.00 50.00 C ATOM 3095 N GLU 353 25.232 5.847 71.030 1.00 50.00 N ATOM 3096 CA GLU 353 24.483 6.504 72.069 1.00 50.00 C ATOM 3097 C GLU 353 23.085 6.909 71.654 1.00 50.00 C ATOM 3098 O GLU 353 22.572 6.983 70.533 1.00 50.00 O ATOM 3099 H GLU 353 25.186 4.953 70.939 1.00 50.00 H ATOM 3100 CB GLU 353 25.225 7.748 72.561 1.00 50.00 C ATOM 3101 CD GLU 353 27.249 8.705 73.729 1.00 50.00 C ATOM 3102 CG GLU 353 26.540 7.449 73.261 1.00 50.00 C ATOM 3103 OE1 GLU 353 26.754 9.812 73.433 1.00 50.00 O ATOM 3104 OE2 GLU 353 28.301 8.581 74.393 1.00 50.00 O ATOM 3105 N GLU 354 22.322 7.072 72.772 1.00 50.00 N ATOM 3106 CA GLU 354 20.914 7.403 72.815 1.00 50.00 C ATOM 3107 C GLU 354 20.758 8.754 73.545 1.00 50.00 C ATOM 3108 O GLU 354 21.489 9.053 74.516 1.00 50.00 O ATOM 3109 H GLU 354 22.779 6.953 73.539 1.00 50.00 H ATOM 3110 CB GLU 354 20.124 6.291 73.508 1.00 50.00 C ATOM 3111 CD GLU 354 19.346 3.888 73.484 1.00 50.00 C ATOM 3112 CG GLU 354 20.165 4.955 72.784 1.00 50.00 C ATOM 3113 OE1 GLU 354 18.817 4.169 74.580 1.00 50.00 O ATOM 3114 OE2 GLU 354 19.233 2.772 72.935 1.00 50.00 O ATOM 3115 N LEU 355 21.901 7.115 71.234 1.00 50.00 N ATOM 3116 CA LEU 355 22.955 6.796 70.268 1.00 50.00 C ATOM 3117 C LEU 355 22.912 7.732 69.070 1.00 50.00 C ATOM 3118 O LEU 355 21.822 8.269 68.758 1.00 50.00 O ATOM 3119 CB LEU 355 22.831 5.345 69.800 1.00 50.00 C ATOM 3120 CG LEU 355 21.563 4.989 69.022 1.00 50.00 C ATOM 3121 CD1 LEU 355 21.701 5.383 67.559 1.00 50.00 C ATOM 3122 CD2 LEU 355 21.256 3.504 69.144 1.00 50.00 C ATOM 3123 N GLY 356 24.005 7.747 68.318 1.00 50.00 N ATOM 3124 CA GLY 356 24.060 8.459 67.048 1.00 50.00 C ATOM 3125 C GLY 356 23.721 7.530 65.894 1.00 50.00 C ATOM 3126 O GLY 356 23.536 6.310 66.104 1.00 50.00 O ATOM 3127 H GLY 356 24.727 7.299 68.614 1.00 50.00 H ATOM 3128 N ASN 357 23.799 8.051 64.687 1.00 50.00 N ATOM 3129 CA ASN 357 23.632 7.286 63.450 1.00 50.00 C ATOM 3130 C ASN 357 23.973 8.145 62.238 1.00 50.00 C ATOM 3131 O ASN 357 24.259 9.356 62.413 1.00 50.00 O ATOM 3132 H ASN 357 23.967 8.935 64.651 1.00 50.00 H ATOM 3133 CB ASN 357 22.208 6.738 63.348 1.00 50.00 C ATOM 3134 CG ASN 357 21.159 7.831 63.387 1.00 50.00 C ATOM 3135 OD1 ASN 357 21.215 8.787 62.614 1.00 50.00 O ATOM 3136 HD21 ASN 357 19.547 8.313 64.355 1.00 50.00 H ATOM 3137 HD22 ASN 357 20.190 6.978 64.837 1.00 50.00 H ATOM 3138 ND2 ASN 357 20.195 7.693 64.290 1.00 50.00 N ATOM 3139 N ILE 358 23.938 7.530 61.072 1.00 50.00 N ATOM 3140 CA ILE 358 24.221 8.213 59.801 1.00 50.00 C ATOM 3141 C ILE 358 23.131 7.984 58.774 1.00 50.00 C ATOM 3142 O ILE 358 22.791 6.808 58.497 1.00 50.00 O ATOM 3143 H ILE 358 23.728 6.655 61.076 1.00 50.00 H ATOM 3144 CB ILE 358 25.574 7.771 59.212 1.00 50.00 C ATOM 3145 CD1 ILE 358 28.044 7.501 59.783 1.00 50.00 C ATOM 3146 CG1 ILE 358 26.709 8.087 60.188 1.00 50.00 C ATOM 3147 CG2 ILE 358 25.799 8.415 57.853 1.00 50.00 C ATOM 3148 N ILE 359 22.707 9.070 58.150 1.00 50.00 N ATOM 3149 CA ILE 359 21.716 9.005 57.083 1.00 50.00 C ATOM 3150 C ILE 359 22.361 8.623 55.752 1.00 50.00 C ATOM 3151 O ILE 359 23.289 9.343 55.304 1.00 50.00 O ATOM 3152 H ILE 359 23.047 9.864 58.401 1.00 50.00 H ATOM 3153 CB ILE 359 20.961 10.339 56.933 1.00 50.00 C ATOM 3154 CD1 ILE 359 19.299 9.712 58.761 1.00 50.00 C ATOM 3155 CG1 ILE 359 20.298 10.729 58.256 1.00 50.00 C ATOM 3156 CG2 ILE 359 19.953 10.254 55.797 1.00 50.00 C ATOM 3157 N VAL 360 22.034 7.463 55.226 1.00 50.00 N ATOM 3158 CA VAL 360 22.697 6.979 54.000 1.00 50.00 C ATOM 3159 C VAL 360 21.824 7.059 52.754 1.00 50.00 C ATOM 3160 O VAL 360 22.352 7.037 51.619 1.00 50.00 O ATOM 3161 H VAL 360 21.398 6.963 55.622 1.00 50.00 H ATOM 3162 CB VAL 360 23.181 5.525 54.156 1.00 50.00 C ATOM 3163 CG1 VAL 360 23.851 5.047 52.878 1.00 50.00 C ATOM 3164 CG2 VAL 360 24.131 5.404 55.337 1.00 50.00 C ATOM 3165 N ALA 361 19.631 9.333 57.360 1.00 50.00 N ATOM 3166 CA ALA 361 20.913 8.660 57.602 1.00 50.00 C ATOM 3167 C ALA 361 21.920 9.509 56.825 1.00 50.00 C ATOM 3168 O ALA 361 22.985 9.891 57.356 1.00 50.00 O ATOM 3169 CB ALA 361 20.844 7.210 57.145 1.00 50.00 C ATOM 3170 N TRP 362 21.548 9.789 55.585 1.00 50.00 N ATOM 3171 CA TRP 362 22.359 10.601 54.668 1.00 50.00 C ATOM 3172 C TRP 362 22.464 11.892 55.480 1.00 50.00 C ATOM 3173 O TRP 362 23.485 12.610 55.420 1.00 50.00 O ATOM 3174 H TRP 362 20.758 9.456 55.312 1.00 50.00 H ATOM 3175 CB TRP 362 21.669 10.724 53.309 1.00 50.00 C ATOM 3176 HB2 TRP 362 20.930 11.448 53.322 1.00 50.00 H ATOM 3177 HB3 TRP 362 21.638 9.889 52.759 1.00 50.00 H ATOM 3178 CG TRP 362 22.456 11.508 52.305 1.00 50.00 C ATOM 3179 CD1 TRP 362 23.423 11.032 51.467 1.00 50.00 C ATOM 3180 HE1 TRP 362 24.592 11.954 50.043 1.00 50.00 H ATOM 3181 NE1 TRP 362 23.920 12.049 50.690 1.00 50.00 N ATOM 3182 CD2 TRP 362 22.345 12.911 52.034 1.00 50.00 C ATOM 3183 CE2 TRP 362 23.273 13.214 51.020 1.00 50.00 C ATOM 3184 CH2 TRP 362 22.641 15.489 51.033 1.00 50.00 C ATOM 3185 CZ2 TRP 362 23.429 14.503 50.512 1.00 50.00 C ATOM 3186 CE3 TRP 362 21.550 13.940 52.549 1.00 50.00 C ATOM 3187 CZ3 TRP 362 21.709 15.216 52.041 1.00 50.00 C ATOM 3188 N ASN 363 21.399 12.150 56.223 1.00 50.00 N ATOM 3189 CA ASN 363 21.292 13.332 57.089 1.00 50.00 C ATOM 3190 C ASN 363 20.972 14.571 56.251 1.00 50.00 C ATOM 3191 O ASN 363 21.799 15.501 56.134 1.00 50.00 O ATOM 3192 H ASN 363 20.719 11.561 56.182 1.00 50.00 H ATOM 3193 CB ASN 363 22.579 13.526 57.892 1.00 50.00 C ATOM 3194 CG ASN 363 22.845 12.383 58.851 1.00 50.00 C ATOM 3195 OD1 ASN 363 21.976 12.004 59.636 1.00 50.00 O ATOM 3196 HD21 ASN 363 24.260 11.147 59.338 1.00 50.00 H ATOM 3197 HD22 ASN 363 24.658 12.136 58.201 1.00 50.00 H ATOM 3198 ND2 ASN 363 24.050 11.829 58.790 1.00 50.00 N ATOM 3199 N PRO 364 19.771 14.553 55.694 1.00 50.00 N ATOM 3200 CA PRO 364 19.255 15.645 54.861 1.00 50.00 C ATOM 3201 C PRO 364 18.221 16.414 55.686 1.00 50.00 C ATOM 3202 O PRO 364 17.612 15.864 56.629 1.00 50.00 O ATOM 3203 CB PRO 364 18.643 14.931 53.653 1.00 50.00 C ATOM 3204 CD PRO 364 19.109 13.219 55.260 1.00 50.00 C ATOM 3205 CG PRO 364 18.128 13.644 54.203 1.00 50.00 C ATOM 3206 N ASN 365 22.919 15.626 55.328 1.00 50.00 N ATOM 3207 CA ASN 365 22.588 15.044 56.649 1.00 50.00 C ATOM 3208 C ASN 365 21.081 14.668 56.739 1.00 50.00 C ATOM 3209 O ASN 365 20.687 14.062 57.750 1.00 50.00 O ATOM 3210 CB ASN 365 22.968 16.011 57.772 1.00 50.00 C ATOM 3211 CG ASN 365 24.467 16.110 57.973 1.00 50.00 C ATOM 3212 OD1 ASN 365 25.218 15.223 57.567 1.00 50.00 O ATOM 3213 HD21 ASN 365 25.790 17.302 58.748 1.00 50.00 H ATOM 3214 HD22 ASN 365 24.325 17.819 58.884 1.00 50.00 H ATOM 3215 ND2 ASN 365 24.908 17.194 58.602 1.00 50.00 N ATOM 3216 N LEU 366 20.279 15.032 55.755 1.00 50.00 N ATOM 3217 CA LEU 366 18.835 14.827 55.707 1.00 50.00 C ATOM 3218 C LEU 366 18.129 15.455 56.902 1.00 50.00 C ATOM 3219 O LEU 366 17.220 14.918 57.537 1.00 50.00 O ATOM 3220 H LEU 366 20.699 15.439 55.070 1.00 50.00 H ATOM 3221 CB LEU 366 18.507 13.333 55.645 1.00 50.00 C ATOM 3222 CG LEU 366 19.103 12.556 54.470 1.00 50.00 C ATOM 3223 CD1 LEU 366 18.756 11.079 54.570 1.00 50.00 C ATOM 3224 CD2 LEU 366 18.616 13.126 53.146 1.00 50.00 C ATOM 3225 N TRP 367 18.627 16.645 57.234 1.00 50.00 N ATOM 3226 CA TRP 367 18.135 17.392 58.378 1.00 50.00 C ATOM 3227 C TRP 367 16.799 18.142 58.195 1.00 50.00 C ATOM 3228 O TRP 367 16.405 18.566 57.124 1.00 50.00 O ATOM 3229 H TRP 367 19.287 16.985 56.725 1.00 50.00 H ATOM 3230 CB TRP 367 19.170 18.425 58.828 1.00 50.00 C ATOM 3231 HB2 TRP 367 18.942 18.809 59.762 1.00 50.00 H ATOM 3232 HB3 TRP 367 19.620 18.937 58.096 1.00 50.00 H ATOM 3233 CG TRP 367 20.433 17.818 59.357 1.00 50.00 C ATOM 3234 CD1 TRP 367 20.665 16.496 59.606 1.00 50.00 C ATOM 3235 HE1 TRP 367 22.318 15.497 60.325 1.00 50.00 H ATOM 3236 NE1 TRP 367 21.941 16.321 60.086 1.00 50.00 N ATOM 3237 CD2 TRP 367 21.639 18.510 59.703 1.00 50.00 C ATOM 3238 CE2 TRP 367 22.558 17.546 60.153 1.00 50.00 C ATOM 3239 CH2 TRP 367 24.201 19.197 60.535 1.00 50.00 C ATOM 3240 CZ2 TRP 367 23.844 17.878 60.573 1.00 50.00 C ATOM 3241 CE3 TRP 367 22.031 19.852 59.675 1.00 50.00 C ATOM 3242 CZ3 TRP 367 23.307 20.178 60.092 1.00 50.00 C ATOM 3243 N LYS 368 15.895 18.409 59.396 1.00 50.00 N ATOM 3244 CA LYS 368 14.743 19.310 59.518 1.00 50.00 C ATOM 3245 C LYS 368 14.678 20.036 60.863 1.00 50.00 C ATOM 3246 O LYS 368 15.092 19.491 61.910 1.00 50.00 O ATOM 3247 CB LYS 368 13.437 18.542 59.310 1.00 50.00 C ATOM 3248 CD LYS 368 11.911 17.302 57.749 1.00 50.00 C ATOM 3249 CE LYS 368 11.719 16.777 56.335 1.00 50.00 C ATOM 3250 CG LYS 368 13.242 18.020 57.895 1.00 50.00 C ATOM 3251 HZ1 LYS 368 10.348 15.759 55.347 1.00 50.00 H ATOM 3252 HZ2 LYS 368 9.754 16.604 56.369 1.00 50.00 H ATOM 3253 HZ3 LYS 368 10.407 15.361 56.743 1.00 50.00 H ATOM 3254 NZ LYS 368 10.426 16.052 56.183 1.00 50.00 N ATOM 3255 N LYS 369 14.141 21.155 60.847 1.00 50.00 N ATOM 3256 CA LYS 369 13.941 22.092 61.961 1.00 50.00 C ATOM 3257 C LYS 369 12.517 22.631 61.874 1.00 50.00 C ATOM 3258 O LYS 369 11.858 22.414 60.822 1.00 50.00 O ATOM 3259 H LYS 369 13.856 21.370 60.022 1.00 50.00 H ATOM 3260 CB LYS 369 14.976 23.217 61.906 1.00 50.00 C ATOM 3261 CD LYS 369 15.945 25.175 60.669 1.00 50.00 C ATOM 3262 CE LYS 369 15.780 26.116 59.488 1.00 50.00 C ATOM 3263 CG LYS 369 14.871 24.099 60.673 1.00 50.00 C ATOM 3264 HZ1 LYS 369 16.708 27.698 58.761 1.00 50.00 H ATOM 3265 HZ2 LYS 369 17.635 26.783 59.404 1.00 50.00 H ATOM 3266 HZ3 LYS 369 16.791 27.649 60.210 1.00 50.00 H ATOM 3267 NZ LYS 369 16.834 27.167 59.463 1.00 50.00 N ATOM 3268 N GLY 370 11.747 23.151 62.816 1.00 50.00 N ATOM 3269 CA GLY 370 10.406 23.749 62.830 1.00 50.00 C ATOM 3270 C GLY 370 10.470 24.772 61.695 1.00 50.00 C ATOM 3271 O GLY 370 11.302 25.704 61.713 1.00 50.00 O ATOM 3272 H GLY 370 12.218 23.086 63.579 1.00 50.00 H ATOM 3273 N THR 371 9.579 24.573 60.736 1.00 50.00 N ATOM 3274 CA THR 371 9.456 25.442 59.559 1.00 50.00 C ATOM 3275 C THR 371 8.495 24.916 58.493 1.00 50.00 C ATOM 3276 O THR 371 7.731 23.956 58.732 1.00 50.00 O ATOM 3277 H THR 371 9.032 23.864 60.831 1.00 50.00 H ATOM 3278 CB THR 371 10.821 25.676 58.885 1.00 50.00 C ATOM 3279 HG1 THR 371 11.426 23.903 59.027 1.00 50.00 H ATOM 3280 OG1 THR 371 11.334 24.430 58.394 1.00 50.00 O ATOM 3281 CG2 THR 371 11.815 26.252 59.881 1.00 50.00 C ATOM 3282 N ASN 372 8.564 25.558 57.337 1.00 50.00 N ATOM 3283 CA ASN 372 7.739 25.208 56.174 1.00 50.00 C ATOM 3284 C ASN 372 7.773 23.694 55.970 1.00 50.00 C ATOM 3285 O ASN 372 6.988 23.132 55.178 1.00 50.00 O ATOM 3286 H ASN 372 9.152 26.238 57.284 1.00 50.00 H ATOM 3287 CB ASN 372 8.223 25.956 54.931 1.00 50.00 C ATOM 3288 CG ASN 372 7.954 27.447 55.005 1.00 50.00 C ATOM 3289 OD1 ASN 372 7.076 27.892 55.744 1.00 50.00 O ATOM 3290 HD21 ASN 372 8.595 29.115 54.247 1.00 50.00 H ATOM 3291 HD22 ASN 372 9.345 27.857 53.715 1.00 50.00 H ATOM 3292 ND2 ASN 372 8.713 28.223 54.240 1.00 50.00 N ATOM 3293 N GLY 373 10.317 24.314 55.665 1.00 50.00 N ATOM 3294 CA GLY 373 10.665 22.929 55.346 1.00 50.00 C ATOM 3295 C GLY 373 11.988 22.427 55.997 1.00 50.00 C ATOM 3296 O GLY 373 12.063 21.499 56.867 1.00 50.00 O ATOM 3297 N TYR 374 12.938 22.891 55.385 1.00 50.00 N ATOM 3298 CA TYR 374 14.297 22.431 55.359 1.00 50.00 C ATOM 3299 C TYR 374 14.632 22.020 53.873 1.00 50.00 C ATOM 3300 O TYR 374 14.898 20.870 53.533 1.00 50.00 O ATOM 3301 H TYR 374 12.698 23.614 54.906 1.00 50.00 H ATOM 3302 CB TYR 374 14.487 21.266 56.331 1.00 50.00 C ATOM 3303 CG TYR 374 15.906 20.747 56.395 1.00 50.00 C ATOM 3304 HH TYR 374 20.180 19.632 57.260 1.00 50.00 H ATOM 3305 OH TYR 374 19.810 19.328 56.583 1.00 50.00 O ATOM 3306 CZ TYR 374 18.518 19.796 56.520 1.00 50.00 C ATOM 3307 CD1 TYR 374 16.751 21.108 57.437 1.00 50.00 C ATOM 3308 CE1 TYR 374 18.048 20.638 57.503 1.00 50.00 C ATOM 3309 CD2 TYR 374 16.397 19.896 55.412 1.00 50.00 C ATOM 3310 CE2 TYR 374 17.692 19.417 55.461 1.00 50.00 C ATOM 3311 N PRO 375 14.739 23.024 53.035 1.00 50.00 N ATOM 3312 CA PRO 375 15.233 22.909 51.638 1.00 50.00 C ATOM 3313 C PRO 375 16.691 22.685 51.762 1.00 50.00 C ATOM 3314 O PRO 375 17.320 22.886 52.916 1.00 50.00 O ATOM 3315 CB PRO 375 14.862 24.250 51.002 1.00 50.00 C ATOM 3316 CD PRO 375 14.347 24.452 53.331 1.00 50.00 C ATOM 3317 CG PRO 375 14.857 25.215 52.140 1.00 50.00 C ATOM 3318 N ILE 376 17.197 22.274 50.600 1.00 50.00 N ATOM 3319 CA ILE 376 18.554 21.998 50.585 1.00 50.00 C ATOM 3320 C ILE 376 19.211 23.251 50.859 1.00 50.00 C ATOM 3321 O ILE 376 20.306 23.188 51.502 1.00 50.00 O ATOM 3322 H ILE 376 16.708 22.172 49.851 1.00 50.00 H ATOM 3323 CB ILE 376 18.989 21.378 49.244 1.00 50.00 C ATOM 3324 CD1 ILE 376 20.507 19.646 50.335 1.00 50.00 C ATOM 3325 CG1 ILE 376 20.399 20.796 49.358 1.00 50.00 C ATOM 3326 CG2 ILE 376 18.888 22.404 48.126 1.00 50.00 C ATOM 3327 N PHE 377 18.549 24.363 50.461 1.00 50.00 N ATOM 3328 CA PHE 377 19.159 25.591 50.660 1.00 50.00 C ATOM 3329 C PHE 377 19.118 26.022 52.212 1.00 50.00 C ATOM 3330 O PHE 377 20.115 26.433 52.834 1.00 50.00 O ATOM 3331 H PHE 377 17.736 24.322 50.076 1.00 50.00 H ATOM 3332 CB PHE 377 18.491 26.667 49.801 1.00 50.00 C ATOM 3333 CG PHE 377 18.678 26.466 48.324 1.00 50.00 C ATOM 3334 CZ PHE 377 19.031 26.099 45.592 1.00 50.00 C ATOM 3335 CD1 PHE 377 17.685 25.880 47.560 1.00 50.00 C ATOM 3336 CE1 PHE 377 17.858 25.696 46.201 1.00 50.00 C ATOM 3337 CD2 PHE 377 19.847 26.865 47.700 1.00 50.00 C ATOM 3338 CE2 PHE 377 20.019 26.681 46.341 1.00 50.00 C ATOM 3339 N GLN 378 19.012 27.826 47.946 1.00 50.00 N ATOM 3340 CA GLN 378 17.818 28.658 47.758 1.00 50.00 C ATOM 3341 C GLN 378 17.826 29.237 46.335 1.00 50.00 C ATOM 3342 O GLN 378 16.818 29.791 45.894 1.00 50.00 O ATOM 3343 CB GLN 378 17.769 29.772 48.806 1.00 50.00 C ATOM 3344 CD GLN 378 20.147 30.463 49.304 1.00 50.00 C ATOM 3345 CG GLN 378 18.841 30.835 48.631 1.00 50.00 C ATOM 3346 OE1 GLN 378 20.511 29.289 49.368 1.00 50.00 O ATOM 3347 HE21 GLN 378 21.641 31.299 50.221 1.00 50.00 H ATOM 3348 HE22 GLN 378 20.555 32.310 49.743 1.00 50.00 H ATOM 3349 NE2 GLN 378 20.857 31.465 49.811 1.00 50.00 N ATOM 3350 N TRP 379 18.922 29.120 45.589 1.00 50.00 N ATOM 3351 CA TRP 379 18.908 29.661 44.221 1.00 50.00 C ATOM 3352 C TRP 379 19.536 31.065 44.193 1.00 50.00 C ATOM 3353 O TRP 379 19.663 31.772 45.189 1.00 50.00 O ATOM 3354 H TRP 379 19.663 28.719 45.907 1.00 50.00 H ATOM 3355 CB TRP 379 17.479 29.703 43.676 1.00 50.00 C ATOM 3356 HB2 TRP 379 17.468 29.851 42.652 1.00 50.00 H ATOM 3357 HB3 TRP 379 16.783 30.042 44.309 1.00 50.00 H ATOM 3358 CG TRP 379 16.859 28.349 43.514 1.00 50.00 C ATOM 3359 CD1 TRP 379 16.085 27.688 44.424 1.00 50.00 C ATOM 3360 HE1 TRP 379 15.162 25.847 44.370 1.00 50.00 H ATOM 3361 NE1 TRP 379 15.698 26.470 43.920 1.00 50.00 N ATOM 3362 CD2 TRP 379 16.960 27.490 42.372 1.00 50.00 C ATOM 3363 CE2 TRP 379 16.223 26.327 42.661 1.00 50.00 C ATOM 3364 CH2 TRP 379 16.747 25.398 40.554 1.00 50.00 C ATOM 3365 CZ2 TRP 379 16.110 25.272 41.757 1.00 50.00 C ATOM 3366 CE3 TRP 379 17.602 27.592 41.134 1.00 50.00 C ATOM 3367 CZ3 TRP 379 17.487 26.544 40.241 1.00 50.00 C ATOM 3368 N SER 380 19.851 31.405 42.947 1.00 50.00 N ATOM 3369 CA SER 380 20.347 32.748 42.636 1.00 50.00 C ATOM 3370 C SER 380 21.599 33.048 43.478 1.00 50.00 C ATOM 3371 O SER 380 22.501 32.214 43.567 1.00 50.00 O ATOM 3372 H SER 380 19.756 30.797 42.290 1.00 50.00 H ATOM 3373 CB SER 380 19.258 33.793 42.887 1.00 50.00 C ATOM 3374 HG SER 380 19.767 35.001 41.562 1.00 50.00 H ATOM 3375 OG SER 380 19.639 35.060 42.379 1.00 50.00 O ATOM 3376 N GLU 381 21.616 34.244 44.055 1.00 50.00 N ATOM 3377 CA GLU 381 22.777 34.681 44.837 1.00 50.00 C ATOM 3378 C GLU 381 22.900 33.932 46.177 1.00 50.00 C ATOM 3379 O GLU 381 23.944 34.118 46.810 1.00 50.00 O ATOM 3380 H GLU 381 20.905 34.788 43.962 1.00 50.00 H ATOM 3381 CB GLU 381 22.709 36.186 45.102 1.00 50.00 C ATOM 3382 CD GLU 381 22.742 38.526 44.152 1.00 50.00 C ATOM 3383 CG GLU 381 22.809 37.042 43.850 1.00 50.00 C ATOM 3384 OE1 GLU 381 22.473 38.884 45.319 1.00 50.00 O ATOM 3385 OE2 GLU 381 22.958 39.331 43.223 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.62 30.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 107.76 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 98.45 30.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 72.44 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.44 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 101.39 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 89.76 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 105.10 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 31.95 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.68 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 81.08 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 79.77 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 74.98 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 108.94 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 30.54 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 33.44 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 4.71 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 30.54 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.80 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.80 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.80 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.25 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.25 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2660 CRMSCA SECONDARY STRUCTURE . . 8.07 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.41 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.36 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.30 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.05 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.45 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.40 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.24 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 9.17 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 7.88 41 100.0 41 CRMSSC SURFACE . . . . . . . . 9.26 119 99.2 120 CRMSSC BURIED . . . . . . . . 9.01 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.72 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.86 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.83 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.82 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.282 0.737 0.770 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 42.804 0.755 0.786 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.152 0.733 0.767 26 100.0 26 ERRCA BURIED . . . . . . . . 42.956 0.756 0.784 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.253 0.736 0.770 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 42.784 0.754 0.785 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.123 0.732 0.767 129 100.0 129 ERRMC BURIED . . . . . . . . 42.982 0.757 0.785 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.295 0.708 0.748 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 41.409 0.712 0.751 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 42.792 0.753 0.784 41 100.0 41 ERRSC SURFACE . . . . . . . . 41.239 0.706 0.746 119 99.2 120 ERRSC BURIED . . . . . . . . 41.950 0.731 0.769 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.822 0.723 0.760 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 42.843 0.755 0.785 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.697 0.720 0.757 223 99.6 224 ERRALL BURIED . . . . . . . . 42.749 0.751 0.782 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 3 26 31 31 DISTCA CA (P) 0.00 3.23 6.45 9.68 83.87 31 DISTCA CA (RMS) 0.00 1.93 2.40 2.64 7.02 DISTCA ALL (N) 1 2 9 34 192 253 254 DISTALL ALL (P) 0.39 0.79 3.54 13.39 75.59 254 DISTALL ALL (RMS) 0.99 1.54 2.62 3.84 7.15 DISTALL END of the results output