####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 250), selected 31 , name T0537TS207_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS207_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 360 - 375 4.51 16.81 LONGEST_CONTINUOUS_SEGMENT: 16 361 - 376 4.62 16.64 LCS_AVERAGE: 48.70 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.82 17.29 LCS_AVERAGE: 19.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.94 16.70 LCS_AVERAGE: 12.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 0 3 13 0 1 3 4 4 4 4 5 9 9 10 11 12 13 14 15 16 19 19 19 LCS_GDT A 352 A 352 3 4 13 0 3 3 4 5 6 6 7 9 10 11 12 13 14 16 16 17 19 19 19 LCS_GDT E 353 E 353 3 4 15 0 3 3 5 5 6 7 7 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT E 354 E 354 3 4 15 1 3 3 5 5 6 7 7 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT L 355 L 355 3 4 15 3 3 3 5 5 6 7 7 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT G 356 G 356 4 4 15 3 4 4 4 5 6 7 7 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT N 357 N 357 4 4 15 3 4 4 4 5 6 6 8 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT I 358 I 358 4 4 15 3 4 4 4 4 5 7 8 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT I 359 I 359 4 6 15 3 4 4 4 5 6 7 8 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT V 360 V 360 4 6 16 3 3 4 4 5 6 7 7 9 11 11 12 15 15 16 16 17 19 19 19 LCS_GDT A 361 A 361 4 6 16 3 3 4 4 5 6 7 8 9 12 14 14 15 15 16 16 17 19 19 19 LCS_GDT W 362 W 362 4 6 16 3 3 4 5 7 9 9 11 13 13 14 14 15 15 16 16 17 19 19 19 LCS_GDT N 363 N 363 4 6 16 3 3 4 4 5 6 8 11 13 13 14 14 15 15 16 16 17 19 19 19 LCS_GDT P 364 P 364 3 6 16 3 3 4 4 5 6 7 11 13 13 14 14 15 15 16 16 17 19 19 19 LCS_GDT N 365 N 365 3 7 16 1 3 4 4 6 7 8 11 13 13 14 14 15 15 16 16 17 17 18 19 LCS_GDT L 366 L 366 3 7 16 3 4 5 5 7 9 9 11 13 13 14 14 15 15 16 16 17 17 18 19 LCS_GDT W 367 W 367 4 7 16 3 4 5 5 7 9 9 11 13 13 14 14 15 15 16 16 17 19 19 19 LCS_GDT K 368 K 368 4 7 16 3 4 5 5 7 9 9 11 13 13 14 14 15 15 16 16 17 19 19 19 LCS_GDT K 369 K 369 4 7 16 3 4 5 5 6 9 9 11 13 13 14 14 15 15 16 16 16 19 19 19 LCS_GDT G 370 G 370 4 7 16 3 4 5 5 6 7 9 10 13 13 14 14 15 15 16 16 16 19 19 19 LCS_GDT T 371 T 371 4 7 16 3 4 5 5 7 9 10 11 13 13 14 14 15 15 16 16 16 19 19 19 LCS_GDT N 372 N 372 3 8 16 3 3 5 6 7 9 10 11 13 13 14 14 15 15 16 16 16 17 18 19 LCS_GDT G 373 G 373 5 8 16 4 4 5 6 7 9 10 11 13 13 14 14 15 15 16 16 16 17 18 19 LCS_GDT Y 374 Y 374 5 8 16 4 4 5 6 7 9 10 11 13 13 14 14 15 15 16 16 16 17 18 19 LCS_GDT P 375 P 375 5 8 16 4 4 5 6 7 8 10 11 11 11 12 14 15 15 16 16 16 17 18 19 LCS_GDT I 376 I 376 5 8 16 4 4 5 6 7 8 10 11 11 11 11 12 12 15 16 16 16 17 17 19 LCS_GDT F 377 F 377 5 8 13 3 4 5 6 7 8 10 11 11 11 11 12 12 12 13 15 15 17 17 17 LCS_GDT Q 378 Q 378 4 8 13 3 4 4 6 7 8 10 11 11 11 11 12 12 12 13 15 15 16 16 17 LCS_GDT W 379 W 379 4 8 13 3 4 4 5 7 8 10 11 11 11 11 12 12 12 13 15 15 16 16 17 LCS_GDT S 380 S 380 4 4 13 3 4 4 4 7 8 10 11 11 11 11 12 12 12 13 15 15 16 16 17 LCS_GDT E 381 E 381 4 4 13 2 4 4 4 7 8 10 11 11 11 11 12 12 12 13 15 15 16 16 17 LCS_AVERAGE LCS_A: 26.81 ( 12.17 19.56 48.70 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 7 9 10 11 13 13 14 14 15 15 16 16 17 19 19 19 GDT PERCENT_AT 12.90 12.90 16.13 19.35 22.58 29.03 32.26 35.48 41.94 41.94 45.16 45.16 48.39 48.39 51.61 51.61 54.84 61.29 61.29 61.29 GDT RMS_LOCAL 0.20 0.20 0.81 1.13 1.56 2.13 2.30 2.75 3.21 3.21 3.56 3.56 3.86 3.86 5.18 5.18 5.47 6.82 6.82 6.63 GDT RMS_ALL_AT 16.02 16.02 17.29 16.00 18.15 17.36 16.54 17.07 16.97 16.97 16.98 16.98 16.97 16.97 15.83 15.83 15.74 13.60 13.60 13.87 # Checking swapping # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 34.784 0 0.294 0.944 36.835 0.000 0.000 LGA A 352 A 352 31.717 0 0.387 0.416 33.388 0.000 0.000 LGA E 353 E 353 31.420 0 0.605 0.757 34.613 0.000 0.000 LGA E 354 E 354 28.479 0 0.568 1.145 34.099 0.000 0.000 LGA L 355 L 355 22.878 0 0.485 1.412 25.305 0.000 0.000 LGA G 356 G 356 19.188 0 0.053 0.053 20.527 0.000 0.000 LGA N 357 N 357 20.833 0 0.164 1.424 26.238 0.000 0.000 LGA I 358 I 358 17.442 0 0.616 1.470 20.060 0.000 0.000 LGA I 359 I 359 14.921 0 0.543 1.121 18.740 0.000 0.000 LGA V 360 V 360 11.069 0 0.746 0.987 14.536 1.071 0.612 LGA A 361 A 361 8.281 0 0.314 0.294 9.219 12.619 10.381 LGA W 362 W 362 2.173 1 0.439 1.328 10.868 55.952 30.986 LGA N 363 N 363 3.894 0 0.152 0.786 6.935 33.810 26.131 LGA P 364 P 364 5.521 0 0.514 0.403 7.710 20.357 21.633 LGA N 365 N 365 4.158 0 0.278 0.659 8.121 48.690 30.536 LGA L 366 L 366 1.405 0 0.634 1.121 3.815 77.143 69.345 LGA W 367 W 367 3.222 1 0.348 1.013 10.206 53.571 21.599 LGA K 368 K 368 1.995 0 0.178 1.260 3.505 70.833 69.841 LGA K 369 K 369 3.164 0 0.069 0.881 13.086 59.167 31.693 LGA G 370 G 370 5.102 0 0.658 0.658 5.102 35.952 35.952 LGA T 371 T 371 1.048 0 0.465 1.049 4.059 75.119 72.789 LGA N 372 N 372 2.023 0 0.443 0.832 8.305 84.167 51.905 LGA G 373 G 373 3.173 0 0.674 0.674 3.173 63.333 63.333 LGA Y 374 Y 374 2.115 1 0.103 0.253 6.075 45.952 38.770 LGA P 375 P 375 6.891 0 0.088 0.197 7.523 17.262 17.687 LGA I 376 I 376 11.105 0 0.209 1.349 15.386 0.119 0.060 LGA F 377 F 377 16.970 0 0.083 1.183 20.033 0.000 0.000 LGA Q 378 Q 378 22.766 0 0.654 1.271 24.316 0.000 0.000 LGA W 379 W 379 25.764 1 0.630 0.989 31.366 0.000 0.000 LGA S 380 S 380 23.794 0 0.136 0.671 24.075 0.000 0.000 LGA E 381 E 381 25.136 0 0.230 1.316 27.756 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 250 98.43 31 SUMMARY(RMSD_GDC): 10.472 10.385 11.173 24.359 19.137 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.75 29.839 28.999 0.386 LGA_LOCAL RMSD: 2.751 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.073 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 10.472 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.972723 * X + -0.008719 * Y + -0.231807 * Z + 14.918415 Y_new = -0.192358 * X + 0.528193 * Y + -0.827049 * Z + 35.762127 Z_new = 0.129650 * X + 0.849080 * Y + 0.512108 * Z + 30.819340 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.195233 -0.130016 1.028076 [DEG: -11.1860 -7.4494 58.9044 ] ZXZ: -0.273270 1.033159 0.151524 [DEG: -15.6572 59.1957 8.6817 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS207_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS207_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.75 28.999 10.47 REMARK ---------------------------------------------------------- MOLECULE T0537TS207_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 3CIO_A 2O04_A 1FP3_A 1PE9_A ATOM 2529 N SER 351 34.118 24.560 64.029 1.00 0.00 N ATOM 2530 CA SER 351 35.167 24.353 63.040 1.00 0.00 C ATOM 2531 CB SER 351 36.590 24.679 63.544 1.00 0.00 C ATOM 2532 OG SER 351 36.678 26.047 63.915 1.00 0.00 O ATOM 2533 C SER 351 35.169 22.950 62.438 1.00 0.00 C ATOM 2534 O SER 351 34.166 22.533 61.861 1.00 0.00 O ATOM 2535 N ALA 352 36.046 22.007 62.773 1.00 0.00 N ATOM 2536 CA ALA 352 36.017 20.674 62.173 1.00 0.00 C ATOM 2537 CB ALA 352 37.428 20.393 61.701 1.00 0.00 C ATOM 2538 C ALA 352 35.515 19.484 63.030 1.00 0.00 C ATOM 2539 O ALA 352 34.447 19.558 63.626 1.00 0.00 O ATOM 2540 N GLU 353 36.339 18.351 63.051 1.00 0.00 N ATOM 2541 CA GLU 353 36.632 17.015 63.710 1.00 0.00 C ATOM 2542 CB GLU 353 36.530 16.667 65.257 1.00 0.00 C ATOM 2543 CG GLU 353 37.274 15.423 65.766 1.00 0.00 C ATOM 2544 CD GLU 353 37.232 15.186 67.293 1.00 0.00 C ATOM 2545 OE1 GLU 353 36.349 15.731 68.007 1.00 0.00 O ATOM 2546 OE2 GLU 353 38.121 14.423 67.764 1.00 0.00 O ATOM 2547 C GLU 353 35.686 15.991 63.382 1.00 0.00 C ATOM 2548 O GLU 353 34.643 16.088 63.958 1.00 0.00 O ATOM 2549 N GLU 354 36.002 14.929 62.623 1.00 0.00 N ATOM 2550 CA GLU 354 35.175 13.754 62.342 1.00 0.00 C ATOM 2551 CB GLU 354 35.204 12.683 63.453 1.00 0.00 C ATOM 2552 CG GLU 354 34.702 13.134 64.825 1.00 0.00 C ATOM 2553 CD GLU 354 34.839 11.933 65.753 1.00 0.00 C ATOM 2554 OE1 GLU 354 34.464 10.810 65.322 1.00 0.00 O ATOM 2555 OE2 GLU 354 35.335 12.117 66.896 1.00 0.00 O ATOM 2556 C GLU 354 33.744 14.013 61.903 1.00 0.00 C ATOM 2557 O GLU 354 33.130 15.027 62.219 1.00 0.00 O ATOM 2558 N LEU 355 33.174 13.057 61.121 1.00 0.00 N ATOM 2559 CA LEU 355 31.853 13.171 60.547 1.00 0.00 C ATOM 2560 CB LEU 355 31.859 13.495 59.042 1.00 0.00 C ATOM 2561 CG LEU 355 32.564 12.504 58.096 1.00 0.00 C ATOM 2562 CD1 LEU 355 32.697 13.145 56.706 1.00 0.00 C ATOM 2563 CD2 LEU 355 33.914 11.992 58.625 1.00 0.00 C ATOM 2564 C LEU 355 31.065 11.913 60.757 1.00 0.00 C ATOM 2565 O LEU 355 31.177 11.260 61.792 1.00 0.00 O ATOM 2566 N GLY 356 30.215 11.551 59.767 1.00 0.00 N ATOM 2567 CA GLY 356 29.390 10.383 59.898 1.00 0.00 C ATOM 2568 C GLY 356 30.324 9.243 60.154 1.00 0.00 C ATOM 2569 O GLY 356 30.049 8.356 60.960 1.00 0.00 O ATOM 2570 N ASN 357 31.470 9.255 59.456 1.00 0.00 N ATOM 2571 CA ASN 357 32.524 8.292 59.620 1.00 0.00 C ATOM 2572 CB ASN 357 32.901 8.050 61.092 1.00 0.00 C ATOM 2573 CG ASN 357 34.227 7.298 61.119 1.00 0.00 C ATOM 2574 OD1 ASN 357 34.415 6.359 61.891 1.00 0.00 O ATOM 2575 ND2 ASN 357 35.184 7.732 60.255 1.00 0.00 N ATOM 2576 C ASN 357 32.101 6.992 59.029 1.00 0.00 C ATOM 2577 O ASN 357 32.917 6.094 58.830 1.00 0.00 O ATOM 2578 N ILE 358 30.806 6.871 58.705 1.00 0.00 N ATOM 2579 CA ILE 358 30.350 5.748 57.954 1.00 0.00 C ATOM 2580 CB ILE 358 29.650 4.633 58.702 1.00 0.00 C ATOM 2581 CG2 ILE 358 30.735 3.869 59.479 1.00 0.00 C ATOM 2582 CG1 ILE 358 28.500 5.112 59.592 1.00 0.00 C ATOM 2583 CD1 ILE 358 29.017 5.749 60.883 1.00 0.00 C ATOM 2584 C ILE 358 29.553 6.325 56.844 1.00 0.00 C ATOM 2585 O ILE 358 28.867 7.333 57.005 1.00 0.00 O ATOM 2586 N ILE 359 29.623 5.679 55.673 1.00 0.00 N ATOM 2587 CA ILE 359 29.158 6.305 54.477 1.00 0.00 C ATOM 2588 CB ILE 359 29.693 5.598 53.263 1.00 0.00 C ATOM 2589 CG2 ILE 359 29.382 4.096 53.389 1.00 0.00 C ATOM 2590 CG1 ILE 359 29.209 6.261 51.967 1.00 0.00 C ATOM 2591 CD1 ILE 359 29.944 5.752 50.727 1.00 0.00 C ATOM 2592 C ILE 359 27.675 6.329 54.380 1.00 0.00 C ATOM 2593 O ILE 359 27.071 5.536 53.665 1.00 0.00 O ATOM 2594 N VAL 360 27.048 7.311 55.053 1.00 0.00 N ATOM 2595 CA VAL 360 25.638 7.531 54.911 1.00 0.00 C ATOM 2596 CB VAL 360 25.012 7.013 56.207 1.00 0.00 C ATOM 2597 CG1 VAL 360 23.639 6.371 56.112 1.00 0.00 C ATOM 2598 CG2 VAL 360 26.045 6.052 56.819 1.00 0.00 C ATOM 2599 C VAL 360 25.778 9.052 54.551 1.00 0.00 C ATOM 2600 O VAL 360 26.691 9.564 55.185 1.00 0.00 O ATOM 2601 N ALA 361 25.123 9.651 53.394 1.00 0.00 N ATOM 2602 CA ALA 361 24.879 10.840 52.504 1.00 0.00 C ATOM 2603 CB ALA 361 24.083 10.467 51.259 1.00 0.00 C ATOM 2604 C ALA 361 24.041 11.350 53.425 1.00 0.00 C ATOM 2605 O ALA 361 24.028 12.489 53.773 1.00 0.00 O ATOM 2606 N TRP 362 23.401 10.326 53.876 1.00 0.00 N ATOM 2607 CA TRP 362 22.722 10.149 55.059 1.00 0.00 C ATOM 2608 CB TRP 362 21.705 9.091 55.143 1.00 0.00 C ATOM 2609 CG TRP 362 20.476 9.677 55.724 1.00 0.00 C ATOM 2610 CD2 TRP 362 20.149 9.618 57.123 1.00 0.00 C ATOM 2611 CD1 TRP 362 19.492 10.355 55.128 1.00 0.00 C ATOM 2612 NE1 TRP 362 18.639 10.818 56.073 1.00 0.00 N ATOM 2613 CE2 TRP 362 19.001 10.362 57.296 1.00 0.00 C ATOM 2614 CE3 TRP 362 20.725 8.973 58.169 1.00 0.00 C ATOM 2615 CZ2 TRP 362 18.392 10.490 58.495 1.00 0.00 C ATOM 2616 CZ3 TRP 362 20.151 9.138 59.396 1.00 0.00 C ATOM 2618 C TRP 362 23.519 9.811 56.260 1.00 0.00 C ATOM 2619 O TRP 362 23.100 8.881 56.911 1.00 0.00 O ATOM 2620 N ASN 363 24.721 10.300 56.540 1.00 0.00 N ATOM 2621 CA ASN 363 25.466 9.843 57.696 1.00 0.00 C ATOM 2622 CB ASN 363 26.606 8.799 57.717 1.00 0.00 C ATOM 2623 CG ASN 363 26.586 8.016 59.003 1.00 0.00 C ATOM 2624 OD1 ASN 363 25.567 7.482 59.439 1.00 0.00 O ATOM 2625 ND2 ASN 363 27.771 7.985 59.652 1.00 0.00 N ATOM 2626 C ASN 363 26.353 10.966 57.933 1.00 0.00 C ATOM 2627 O ASN 363 27.237 11.145 57.142 1.00 0.00 O ATOM 2628 N PRO 364 26.363 11.516 59.066 1.00 0.00 N ATOM 2629 CA PRO 364 26.675 12.893 59.355 1.00 0.00 C ATOM 2630 CD PRO 364 26.396 10.717 60.282 1.00 0.00 C ATOM 2631 CB PRO 364 27.341 12.891 60.733 1.00 0.00 C ATOM 2632 CG PRO 364 26.718 11.677 61.434 1.00 0.00 C ATOM 2633 C PRO 364 27.189 14.020 58.518 1.00 0.00 C ATOM 2634 O PRO 364 28.373 14.130 58.213 1.00 0.00 O ATOM 2635 N ASN 365 26.211 14.955 58.347 1.00 0.00 N ATOM 2636 CA ASN 365 26.035 16.145 57.604 1.00 0.00 C ATOM 2637 CB ASN 365 26.637 16.228 56.210 1.00 0.00 C ATOM 2638 CG ASN 365 27.919 16.766 56.598 1.00 0.00 C ATOM 2639 OD1 ASN 365 28.105 16.923 57.794 1.00 0.00 O ATOM 2640 ND2 ASN 365 28.750 17.115 55.615 1.00 0.00 N ATOM 2641 C ASN 365 24.910 17.058 58.102 1.00 0.00 C ATOM 2642 O ASN 365 25.357 18.094 58.529 1.00 0.00 O ATOM 2643 N LEU 366 23.525 16.955 58.079 1.00 0.00 N ATOM 2644 CA LEU 366 22.929 18.120 58.830 1.00 0.00 C ATOM 2645 CB LEU 366 23.086 19.360 57.954 1.00 0.00 C ATOM 2646 CG LEU 366 23.103 18.890 56.477 1.00 0.00 C ATOM 2647 CD1 LEU 366 21.883 19.412 55.665 1.00 0.00 C ATOM 2648 CD2 LEU 366 24.521 18.935 55.953 1.00 0.00 C ATOM 2649 C LEU 366 21.412 18.213 59.087 1.00 0.00 C ATOM 2650 O LEU 366 21.073 18.925 58.170 1.00 0.00 O ATOM 2651 N TRP 367 20.476 17.737 60.103 1.00 0.00 N ATOM 2652 CA TRP 367 18.899 17.489 60.070 1.00 0.00 C ATOM 2653 CB TRP 367 18.360 16.168 60.691 1.00 0.00 C ATOM 2654 CG TRP 367 17.154 15.433 60.049 1.00 0.00 C ATOM 2655 CD2 TRP 367 15.810 15.829 59.626 1.00 0.00 C ATOM 2656 CD1 TRP 367 17.267 14.128 59.665 1.00 0.00 C ATOM 2657 NE1 TRP 367 16.124 13.694 59.056 1.00 0.00 N ATOM 2658 CE2 TRP 367 15.226 14.725 59.009 1.00 0.00 C ATOM 2659 CE3 TRP 367 15.128 17.027 59.657 1.00 0.00 C ATOM 2660 CZ2 TRP 367 13.989 14.793 58.439 1.00 0.00 C ATOM 2661 CZ3 TRP 367 13.857 17.078 59.139 1.00 0.00 C ATOM 2663 C TRP 367 17.741 18.314 60.696 1.00 0.00 C ATOM 2664 O TRP 367 17.477 17.900 61.804 1.00 0.00 O ATOM 2665 N LYS 368 16.883 19.189 59.996 1.00 0.00 N ATOM 2666 CA LYS 368 16.013 20.283 60.457 1.00 0.00 C ATOM 2667 CB LYS 368 16.765 21.533 60.863 1.00 0.00 C ATOM 2668 CG LYS 368 16.510 22.649 61.900 1.00 0.00 C ATOM 2669 CD LYS 368 17.535 23.645 61.477 1.00 0.00 C ATOM 2670 CE LYS 368 17.273 23.492 60.000 1.00 0.00 C ATOM 2671 NZ LYS 368 18.404 23.070 59.177 1.00 0.00 N ATOM 2672 C LYS 368 14.994 20.922 59.532 1.00 0.00 C ATOM 2673 O LYS 368 14.614 20.491 58.452 1.00 0.00 O ATOM 2674 N LYS 369 14.551 22.057 60.107 1.00 0.00 N ATOM 2675 CA LYS 369 13.737 23.214 59.964 1.00 0.00 C ATOM 2676 CB LYS 369 13.436 23.759 58.582 1.00 0.00 C ATOM 2677 CG LYS 369 12.759 25.141 58.654 1.00 0.00 C ATOM 2678 CD LYS 369 12.929 26.019 57.414 1.00 0.00 C ATOM 2679 CE LYS 369 11.686 26.102 56.531 1.00 0.00 C ATOM 2680 NZ LYS 369 11.502 27.489 56.062 1.00 0.00 N ATOM 2681 C LYS 369 12.496 22.890 60.630 1.00 0.00 C ATOM 2682 O LYS 369 11.967 21.818 60.390 1.00 0.00 O ATOM 2683 N GLY 370 12.120 23.754 61.580 1.00 0.00 N ATOM 2684 CA GLY 370 10.893 23.774 62.295 1.00 0.00 C ATOM 2685 C GLY 370 9.848 24.338 61.392 1.00 0.00 C ATOM 2686 O GLY 370 8.673 24.129 61.614 1.00 0.00 O ATOM 2687 N THR 371 10.217 25.085 60.345 1.00 0.00 N ATOM 2688 CA THR 371 9.261 25.796 59.518 1.00 0.00 C ATOM 2689 CB THR 371 9.882 26.906 58.716 1.00 0.00 C ATOM 2690 OG1 THR 371 10.579 27.789 59.582 1.00 0.00 O ATOM 2691 CG2 THR 371 8.771 27.699 58.000 1.00 0.00 C ATOM 2692 C THR 371 8.550 24.880 58.614 1.00 0.00 C ATOM 2693 O THR 371 7.976 23.940 59.045 1.00 0.00 O ATOM 2694 N ASN 372 8.466 24.992 57.321 1.00 0.00 N ATOM 2695 CA ASN 372 7.833 23.962 56.553 1.00 0.00 C ATOM 2696 CB ASN 372 6.419 24.418 56.254 1.00 0.00 C ATOM 2697 CG ASN 372 5.494 24.152 57.402 1.00 0.00 C ATOM 2698 OD1 ASN 372 5.615 24.683 58.502 1.00 0.00 O ATOM 2699 ND2 ASN 372 4.487 23.299 57.108 1.00 0.00 N ATOM 2700 C ASN 372 8.543 24.275 55.337 1.00 0.00 C ATOM 2701 O ASN 372 7.976 24.924 54.476 1.00 0.00 O ATOM 2702 N GLY 373 9.794 23.865 55.205 1.00 0.00 N ATOM 2703 CA GLY 373 10.373 24.521 54.088 1.00 0.00 C ATOM 2704 C GLY 373 11.007 23.507 53.245 1.00 0.00 C ATOM 2705 O GLY 373 11.764 22.660 53.714 1.00 0.00 O ATOM 2706 N TYR 374 10.685 23.569 51.952 1.00 0.00 N ATOM 2707 CA TYR 374 11.320 22.649 51.089 1.00 0.00 C ATOM 2708 CB TYR 374 10.362 21.752 50.325 1.00 0.00 C ATOM 2709 CG TYR 374 9.495 21.028 51.274 1.00 0.00 C ATOM 2710 CD1 TYR 374 9.985 19.985 52.017 1.00 0.00 C ATOM 2711 CD2 TYR 374 8.181 21.400 51.395 1.00 0.00 C ATOM 2712 CE1 TYR 374 9.154 19.313 52.870 1.00 0.00 C ATOM 2713 CE2 TYR 374 7.351 20.717 52.247 1.00 0.00 C ATOM 2714 CZ TYR 374 7.841 19.673 52.985 1.00 0.00 C ATOM 2716 C TYR 374 11.936 23.429 50.006 1.00 0.00 C ATOM 2717 O TYR 374 11.201 23.761 49.092 1.00 0.00 O ATOM 2718 N PRO 375 13.222 23.629 49.983 1.00 0.00 N ATOM 2719 CA PRO 375 13.851 24.459 48.991 1.00 0.00 C ATOM 2720 CD PRO 375 14.018 23.534 51.179 1.00 0.00 C ATOM 2721 CB PRO 375 15.340 24.299 49.248 1.00 0.00 C ATOM 2722 CG PRO 375 15.386 24.114 50.774 1.00 0.00 C ATOM 2723 C PRO 375 13.447 24.134 47.603 1.00 0.00 C ATOM 2724 O PRO 375 13.584 22.988 47.218 1.00 0.00 O ATOM 2725 N ILE 376 12.898 25.107 46.857 1.00 0.00 N ATOM 2726 CA ILE 376 12.558 24.940 45.475 1.00 0.00 C ATOM 2727 CB ILE 376 11.595 23.816 45.134 1.00 0.00 C ATOM 2728 CG2 ILE 376 10.147 24.191 45.507 1.00 0.00 C ATOM 2729 CG1 ILE 376 11.723 23.478 43.640 1.00 0.00 C ATOM 2730 CD1 ILE 376 11.370 24.636 42.706 1.00 0.00 C ATOM 2731 C ILE 376 11.944 26.245 45.106 1.00 0.00 C ATOM 2732 O ILE 376 11.046 26.736 45.785 1.00 0.00 O ATOM 2733 N PHE 377 12.411 26.922 44.050 1.00 0.00 N ATOM 2734 CA PHE 377 11.624 28.102 43.943 1.00 0.00 C ATOM 2735 CB PHE 377 12.356 29.401 43.550 1.00 0.00 C ATOM 2736 CG PHE 377 11.466 30.536 43.975 1.00 0.00 C ATOM 2737 CD1 PHE 377 10.368 30.909 43.242 1.00 0.00 C ATOM 2738 CD2 PHE 377 11.722 31.246 45.126 1.00 0.00 C ATOM 2739 CE1 PHE 377 9.552 31.944 43.631 1.00 0.00 C ATOM 2740 CE2 PHE 377 10.915 32.283 45.533 1.00 0.00 C ATOM 2741 CZ PHE 377 9.823 32.638 44.783 1.00 0.00 C ATOM 2742 C PHE 377 10.520 27.765 43.011 1.00 0.00 C ATOM 2743 O PHE 377 10.735 27.200 41.940 1.00 0.00 O ATOM 2744 N GLN 378 9.292 28.067 43.462 1.00 0.00 N ATOM 2745 CA GLN 378 8.097 27.700 42.772 1.00 0.00 C ATOM 2746 CB GLN 378 7.407 26.513 43.455 1.00 0.00 C ATOM 2747 CG GLN 378 6.917 26.939 44.847 1.00 0.00 C ATOM 2748 CD GLN 378 6.399 25.747 45.637 1.00 0.00 C ATOM 2749 OE1 GLN 378 7.185 24.902 46.061 1.00 0.00 O ATOM 2750 NE2 GLN 378 5.060 25.691 45.869 1.00 0.00 N ATOM 2751 C GLN 378 7.136 28.820 42.976 1.00 0.00 C ATOM 2752 O GLN 378 7.381 29.747 43.746 1.00 0.00 O ATOM 2753 N TRP 379 6.015 28.766 42.242 1.00 0.00 N ATOM 2754 CA TRP 379 4.956 29.694 42.466 1.00 0.00 C ATOM 2755 CB TRP 379 4.734 30.705 41.331 1.00 0.00 C ATOM 2756 CG TRP 379 3.582 31.648 41.571 1.00 0.00 C ATOM 2757 CD2 TRP 379 2.230 31.357 41.189 1.00 0.00 C ATOM 2758 CD1 TRP 379 3.564 32.880 42.157 1.00 0.00 C ATOM 2759 NE1 TRP 379 2.282 33.376 42.160 1.00 0.00 N ATOM 2760 CE2 TRP 379 1.451 32.448 41.568 1.00 0.00 C ATOM 2761 CE3 TRP 379 1.686 30.267 40.573 1.00 0.00 C ATOM 2762 CZ2 TRP 379 0.106 32.466 41.334 1.00 0.00 C ATOM 2763 CZ3 TRP 379 0.330 30.289 40.338 1.00 0.00 C ATOM 2765 C TRP 379 3.744 28.839 42.574 1.00 0.00 C ATOM 2766 O TRP 379 3.466 28.027 41.692 1.00 0.00 O ATOM 2767 N SER 380 2.999 28.976 43.682 1.00 0.00 N ATOM 2768 CA SER 380 1.848 28.144 43.835 1.00 0.00 C ATOM 2769 CB SER 380 2.150 26.780 44.480 1.00 0.00 C ATOM 2770 OG SER 380 2.657 26.961 45.794 1.00 0.00 O ATOM 2771 C SER 380 0.893 28.859 44.724 1.00 0.00 C ATOM 2772 O SER 380 1.195 29.926 45.257 1.00 0.00 O ATOM 2773 N GLU 381 -0.309 28.277 44.894 1.00 0.00 N ATOM 2774 CA GLU 381 -1.302 28.894 45.716 1.00 0.00 C ATOM 2775 CB GLU 381 -2.688 28.232 45.621 1.00 0.00 C ATOM 2776 CG GLU 381 -2.773 26.842 46.259 1.00 0.00 C ATOM 2777 CD GLU 381 -2.065 25.828 45.371 1.00 0.00 C ATOM 2778 OE1 GLU 381 -0.808 25.763 45.426 1.00 0.00 O ATOM 2779 OE2 GLU 381 -2.776 25.095 44.633 1.00 0.00 O ATOM 2780 C GLU 381 -0.852 28.777 47.165 1.00 0.00 C ATOM 2781 O GLU 381 0.372 28.595 47.402 1.00 0.00 O ATOM 2782 OXT GLU 381 -1.733 28.870 48.061 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 250 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.41 30.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 98.62 27.3 22 100.0 22 ARMSMC SURFACE . . . . . . . . 87.94 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 90.73 60.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 104.82 19.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 106.53 20.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 99.39 12.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 108.58 17.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 69.49 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.77 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 73.70 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 75.84 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 75.23 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 8.30 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.43 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 76.58 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 35.49 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 71.43 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.59 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 50.59 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 50.59 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.47 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.47 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3378 CRMSCA SECONDARY STRUCTURE . . 9.06 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.59 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.85 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.52 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.06 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.59 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.13 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.15 126 96.9 130 CRMSSC RELIABLE SIDE CHAINS . 11.96 110 96.5 114 CRMSSC SECONDARY STRUCTURE . . 9.98 40 97.6 41 CRMSSC SURFACE . . . . . . . . 12.10 116 96.7 120 CRMSSC BURIED . . . . . . . . 12.69 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.32 250 98.4 254 CRMSALL SECONDARY STRUCTURE . . 9.40 84 98.8 85 CRMSALL SURFACE . . . . . . . . 11.37 220 98.2 224 CRMSALL BURIED . . . . . . . . 10.91 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.155 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.479 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 10.218 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 9.825 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.202 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 8.519 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 10.235 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 10.017 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.381 1.000 0.500 126 96.9 130 ERRSC RELIABLE SIDE CHAINS . 11.106 1.000 0.500 110 96.5 114 ERRSC SECONDARY STRUCTURE . . 8.961 1.000 0.500 40 97.6 41 ERRSC SURFACE . . . . . . . . 11.282 1.000 0.500 116 96.7 120 ERRSC BURIED . . . . . . . . 12.523 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.742 1.000 0.500 250 98.4 254 ERRALL SECONDARY STRUCTURE . . 8.644 1.000 0.500 84 98.8 85 ERRALL SURFACE . . . . . . . . 10.747 1.000 0.500 220 98.2 224 ERRALL BURIED . . . . . . . . 10.704 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 2 12 31 31 DISTCA CA (P) 0.00 0.00 6.45 6.45 38.71 31 DISTCA CA (RMS) 0.00 0.00 2.19 2.19 8.20 DISTCA ALL (N) 0 5 12 18 85 250 254 DISTALL ALL (P) 0.00 1.97 4.72 7.09 33.46 254 DISTALL ALL (RMS) 0.00 1.35 2.13 3.06 7.55 DISTALL END of the results output