####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 297), selected 31 , name T0537TS199_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS199_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 360 - 374 4.98 12.97 LONGEST_CONTINUOUS_SEGMENT: 15 361 - 375 4.86 12.85 LCS_AVERAGE: 45.47 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 361 - 368 1.96 16.19 LCS_AVERAGE: 18.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.15 22.89 LONGEST_CONTINUOUS_SEGMENT: 6 362 - 367 0.51 16.28 LCS_AVERAGE: 14.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 6 6 6 6 6 6 7 8 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT A 352 A 352 6 6 14 6 6 6 6 6 6 7 8 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT E 353 E 353 6 6 14 6 6 6 6 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT E 354 E 354 6 6 14 6 6 6 6 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT L 355 L 355 6 6 14 6 6 6 6 6 6 7 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT G 356 G 356 6 6 14 6 6 6 6 6 6 6 6 7 10 12 15 15 16 18 19 20 22 23 23 LCS_GDT N 357 N 357 3 4 14 3 3 4 4 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT I 358 I 358 3 4 14 3 3 3 4 4 7 8 9 10 11 12 15 16 17 17 18 20 22 23 23 LCS_GDT I 359 I 359 3 4 14 3 3 4 5 6 7 8 9 10 11 12 15 16 17 18 19 20 22 23 23 LCS_GDT V 360 V 360 3 4 15 1 3 4 4 5 5 7 8 10 11 12 15 16 17 18 19 20 22 23 23 LCS_GDT A 361 A 361 3 8 15 0 3 4 5 6 7 9 9 10 11 12 15 16 17 18 19 20 22 23 23 LCS_GDT W 362 W 362 6 8 15 4 6 6 7 7 7 9 9 10 11 12 15 16 17 18 19 20 22 23 23 LCS_GDT N 363 N 363 6 8 15 4 6 6 7 7 7 9 9 10 11 12 14 16 17 18 19 20 22 23 23 LCS_GDT P 364 P 364 6 8 15 4 6 6 7 7 7 9 9 9 10 12 14 16 17 18 19 20 22 23 23 LCS_GDT N 365 N 365 6 8 15 4 6 6 7 7 7 9 9 9 10 11 14 16 17 18 19 20 22 23 23 LCS_GDT L 366 L 366 6 8 15 4 6 6 7 7 7 9 9 10 10 12 14 16 17 18 19 20 22 23 23 LCS_GDT W 367 W 367 6 8 15 4 6 6 7 7 7 9 9 9 10 11 14 16 17 18 19 20 21 22 23 LCS_GDT K 368 K 368 3 8 15 0 3 4 7 7 7 9 9 9 10 11 14 16 17 18 18 19 20 21 23 LCS_GDT K 369 K 369 4 5 15 3 4 4 4 5 5 6 7 9 9 11 13 15 16 18 18 19 20 21 23 LCS_GDT G 370 G 370 4 5 15 3 4 4 4 5 6 9 9 9 10 11 14 16 17 18 18 19 20 21 23 LCS_GDT T 371 T 371 4 5 15 3 4 4 4 5 6 6 7 9 10 11 14 16 17 18 18 19 20 21 23 LCS_GDT N 372 N 372 4 5 15 3 4 4 5 5 6 8 9 10 10 11 14 16 17 18 18 19 20 21 23 LCS_GDT G 373 G 373 4 5 15 3 4 4 5 5 6 8 9 10 10 11 14 16 17 18 18 19 20 21 23 LCS_GDT Y 374 Y 374 4 5 15 3 4 4 5 5 6 8 9 10 10 11 14 16 17 18 18 19 20 22 23 LCS_GDT P 375 P 375 4 5 15 3 4 4 5 5 6 8 9 10 11 12 14 16 17 18 19 20 22 23 23 LCS_GDT I 376 I 376 4 5 12 1 4 4 5 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT F 377 F 377 4 5 12 4 4 4 5 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT Q 378 Q 378 4 5 12 4 4 4 5 6 7 8 9 10 11 12 15 16 16 18 19 20 22 23 23 LCS_GDT W 379 W 379 4 5 12 4 4 4 4 5 5 8 9 10 10 10 11 11 13 16 17 19 22 23 23 LCS_GDT S 380 S 380 4 5 12 4 4 4 5 5 6 8 9 10 10 10 11 11 13 16 17 19 22 23 23 LCS_GDT E 381 E 381 3 5 12 0 3 3 3 5 5 8 9 10 10 10 11 11 16 17 18 20 22 23 23 LCS_AVERAGE LCS_A: 26.33 ( 14.67 18.83 45.47 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 6 7 7 7 9 9 10 11 12 15 16 17 18 19 20 22 23 23 GDT PERCENT_AT 19.35 19.35 19.35 22.58 22.58 22.58 29.03 29.03 32.26 35.48 38.71 48.39 51.61 54.84 58.06 61.29 64.52 70.97 74.19 74.19 GDT RMS_LOCAL 0.15 0.15 0.15 1.11 1.11 1.11 2.50 2.44 2.78 3.04 3.36 4.53 4.78 5.42 5.35 5.52 5.71 6.27 6.38 6.41 GDT RMS_ALL_AT 22.89 22.89 22.89 17.14 17.14 17.14 15.77 13.11 13.04 13.05 13.24 12.20 11.02 12.01 10.37 10.48 10.57 11.13 10.96 10.55 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 5.413 0 0.615 0.942 8.107 34.524 25.476 LGA A 352 A 352 5.482 0 0.003 0.017 7.671 33.214 28.000 LGA E 353 E 353 2.760 0 0.049 0.903 8.957 64.286 36.984 LGA E 354 E 354 3.024 0 0.053 0.223 9.166 50.833 31.376 LGA L 355 L 355 3.612 0 0.083 0.174 6.523 40.238 41.071 LGA G 356 G 356 5.534 0 0.357 0.357 5.797 29.286 29.286 LGA N 357 N 357 2.228 0 0.563 0.649 6.664 69.286 47.143 LGA I 358 I 358 3.510 0 0.550 0.600 10.356 59.405 33.631 LGA I 359 I 359 1.125 0 0.582 0.617 4.865 62.500 54.940 LGA V 360 V 360 6.374 0 0.606 1.443 8.914 13.571 14.014 LGA A 361 A 361 12.403 0 0.654 0.587 14.326 0.000 0.000 LGA W 362 W 362 12.480 0 0.623 0.502 14.862 0.000 0.000 LGA N 363 N 363 16.356 0 0.137 0.204 19.947 0.000 0.000 LGA P 364 P 364 20.645 0 0.090 0.295 23.102 0.000 0.000 LGA N 365 N 365 21.758 0 0.172 0.172 27.080 0.000 0.000 LGA L 366 L 366 14.973 0 0.095 1.416 17.300 0.000 0.000 LGA W 367 W 367 15.101 0 0.580 1.325 18.980 0.000 0.000 LGA K 368 K 368 21.115 0 0.633 1.017 24.341 0.000 0.000 LGA K 369 K 369 22.397 0 0.649 1.141 24.799 0.000 0.000 LGA G 370 G 370 21.601 0 0.597 0.597 23.233 0.000 0.000 LGA T 371 T 371 21.833 0 0.124 1.152 23.140 0.000 0.000 LGA N 372 N 372 20.878 0 0.657 1.413 20.925 0.000 0.000 LGA G 373 G 373 18.037 0 0.682 0.682 18.944 0.000 0.000 LGA Y 374 Y 374 11.570 0 0.084 1.113 18.420 1.071 0.357 LGA P 375 P 375 7.343 0 0.609 0.574 11.150 17.619 10.476 LGA I 376 I 376 0.295 0 0.653 1.176 7.190 86.905 60.417 LGA F 377 F 377 1.122 0 0.619 1.380 7.193 72.024 49.004 LGA Q 378 Q 378 1.914 0 0.027 0.289 9.022 54.405 34.921 LGA W 379 W 379 8.820 0 0.256 1.099 15.936 5.119 1.463 LGA S 380 S 380 10.426 0 0.657 0.788 12.647 0.714 1.746 LGA E 381 E 381 13.644 1 0.039 0.568 20.591 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.415 9.393 10.933 22.419 16.139 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.44 33.065 28.831 0.355 LGA_LOCAL RMSD: 2.435 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.107 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.415 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.653911 * X + 0.683579 * Y + -0.324222 * Z + 49.940575 Y_new = -0.622736 * X + -0.729674 * Y + -0.282446 * Z + 44.446606 Z_new = -0.429651 * X + 0.017210 * Y + 0.902831 * Z + 11.434662 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.380609 0.444106 0.019060 [DEG: -136.3989 25.4454 1.0921 ] ZXZ: -0.854151 0.444487 -1.530762 [DEG: -48.9392 25.4673 -87.7062 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS199_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS199_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.44 28.831 9.41 REMARK ---------------------------------------------------------- MOLECULE T0537TS199_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2UVEA ATOM 2991 N SER 351 9.299 17.645 50.731 1.00 1.00 N ATOM 2992 CA SER 351 9.072 16.280 50.269 1.00 1.00 C ATOM 2993 C SER 351 9.656 15.263 51.243 1.00 1.00 C ATOM 2994 O SER 351 9.055 14.219 51.498 1.00 1.00 O ATOM 2995 H SER 351 9.828 18.279 50.150 1.00 1.00 H ATOM 2996 CB SER 351 9.669 16.091 48.888 1.00 1.00 C ATOM 2997 OG SER 351 9.016 16.866 47.921 1.00 1.00 O ATOM 2998 N ALA 352 10.828 15.574 51.784 1.00 1.00 N ATOM 2999 CA ALA 352 11.478 14.704 52.754 1.00 1.00 C ATOM 3000 C ALA 352 10.597 14.486 53.977 1.00 1.00 C ATOM 3001 O ALA 352 10.472 13.369 54.474 1.00 1.00 O ATOM 3002 H ALA 352 11.280 16.437 51.517 1.00 1.00 H ATOM 3003 CB ALA 352 12.825 15.281 53.164 1.00 1.00 C ATOM 3004 N GLU 353 9.987 15.564 54.461 1.00 1.00 N ATOM 3005 CA GLU 353 9.087 15.488 55.605 1.00 1.00 C ATOM 3006 C GLU 353 7.844 14.672 55.275 1.00 1.00 C ATOM 3007 O GLU 353 7.332 13.937 56.117 1.00 1.00 O ATOM 3008 H GLU 353 10.152 16.459 54.024 1.00 1.00 H ATOM 3009 CB GLU 353 8.688 16.891 56.067 1.00 1.00 C ATOM 3010 CG GLU 353 9.811 17.681 56.723 1.00 1.00 C ATOM 3011 CD GLU 353 9.377 19.084 57.045 1.00 1.00 C ATOM 3012 OE1 GLU 353 8.273 19.437 56.704 1.00 1.00 O ATOM 3013 OE2 GLU 353 10.102 19.766 57.731 1.00 1.00 O ATOM 3014 N GLU 354 7.365 14.808 54.044 1.00 1.00 N ATOM 3015 CA GLU 354 6.218 14.034 53.579 1.00 1.00 C ATOM 3016 C GLU 354 6.562 12.555 53.464 1.00 1.00 C ATOM 3017 O GLU 354 5.707 11.694 53.667 1.00 1.00 O ATOM 3018 H GLU 354 7.805 15.463 53.413 1.00 1.00 H ATOM 3019 CB GLU 354 5.724 14.566 52.232 1.00 1.00 C ATOM 3020 CG GLU 354 5.054 15.931 52.302 1.00 1.00 C ATOM 3021 CD GLU 354 4.685 16.428 50.933 1.00 1.00 C ATOM 3022 OE1 GLU 354 4.999 15.764 49.974 1.00 1.00 O ATOM 3023 OE2 GLU 354 3.991 17.414 50.848 1.00 1.00 O ATOM 3024 N LEU 355 7.817 12.269 53.138 1.00 1.00 N ATOM 3025 CA LEU 355 8.281 10.892 53.013 1.00 1.00 C ATOM 3026 C LEU 355 8.678 10.318 54.368 1.00 1.00 C ATOM 3027 O LEU 355 8.676 9.103 54.564 1.00 1.00 O ATOM 3028 H LEU 355 8.467 13.025 52.973 1.00 1.00 H ATOM 3029 CB LEU 355 9.461 10.816 52.037 1.00 1.00 C ATOM 3030 CG LEU 355 9.136 11.206 50.589 1.00 1.00 C ATOM 3031 CD1 LEU 355 10.403 11.184 49.744 1.00 1.00 C ATOM 3032 CD2 LEU 355 8.096 10.249 50.026 1.00 1.00 C ATOM 3033 N GLY 356 9.018 11.201 55.301 1.00 1.00 N ATOM 3034 CA GLY 356 9.404 10.785 56.644 1.00 1.00 C ATOM 3035 C GLY 356 10.886 10.440 56.708 1.00 1.00 C ATOM 3036 O GLY 356 11.307 9.626 57.530 1.00 1.00 O ATOM 3037 H GLY 356 9.010 12.185 55.074 1.00 1.00 H ATOM 3038 N ASN 357 11.672 11.063 55.838 1.00 1.00 N ATOM 3039 CA ASN 357 13.102 10.791 55.768 1.00 1.00 C ATOM 3040 C ASN 357 13.911 12.080 55.837 1.00 1.00 C ATOM 3041 O ASN 357 13.359 13.177 55.755 1.00 1.00 O ATOM 3042 H ASN 357 11.269 11.742 55.208 1.00 1.00 H ATOM 3043 CB ASN 357 13.458 10.013 54.514 1.00 1.00 C ATOM 3044 CG ASN 357 12.794 8.667 54.427 1.00 1.00 C ATOM 3045 OD1 ASN 357 13.058 7.769 55.234 1.00 1.00 O ATOM 3046 ND2 ASN 357 11.996 8.498 53.405 1.00 1.00 N ATOM 3047 HD21 ASN 357 11.518 7.627 53.283 1.00 1.00 H ATOM 3048 HD22 ASN 357 11.861 9.237 52.746 1.00 1.00 H ATOM 3049 N ILE 358 15.223 11.941 55.990 1.00 1.00 N ATOM 3050 CA ILE 358 16.121 13.091 55.992 1.00 1.00 C ATOM 3051 C ILE 358 16.781 13.277 54.633 1.00 1.00 C ATOM 3052 O ILE 358 17.923 12.865 54.425 1.00 1.00 O ATOM 3053 H ILE 358 15.610 11.015 56.108 1.00 1.00 H ATOM 3054 CB ILE 358 17.214 12.953 57.068 1.00 1.00 C ATOM 3055 CG1 ILE 358 16.582 12.784 58.452 1.00 1.00 C ATOM 3056 CG2 ILE 358 18.139 14.159 57.044 1.00 1.00 C ATOM 3057 CD1 ILE 358 17.564 12.378 59.527 1.00 1.00 C ATOM 3058 N ILE 359 16.057 13.902 53.710 1.00 1.00 N ATOM 3059 CA ILE 359 16.559 14.109 52.355 1.00 1.00 C ATOM 3060 C ILE 359 16.732 15.593 52.054 1.00 1.00 C ATOM 3061 O ILE 359 15.800 16.380 52.207 1.00 1.00 O ATOM 3062 H ILE 359 15.138 14.243 53.951 1.00 1.00 H ATOM 3063 CB ILE 359 15.623 13.486 51.304 1.00 1.00 C ATOM 3064 CG1 ILE 359 15.506 11.975 51.521 1.00 1.00 C ATOM 3065 CG2 ILE 359 16.122 13.789 49.901 1.00 1.00 C ATOM 3066 CD1 ILE 359 14.441 11.317 50.675 1.00 1.00 C ATOM 3067 N VAL 360 17.935 15.967 51.627 1.00 1.00 N ATOM 3068 CA VAL 360 18.264 17.368 51.402 1.00 1.00 C ATOM 3069 C VAL 360 18.978 17.560 50.070 1.00 1.00 C ATOM 3070 O VAL 360 19.576 16.628 49.536 1.00 1.00 O ATOM 3071 H VAL 360 18.638 15.262 51.455 1.00 1.00 H ATOM 3072 CB VAL 360 19.148 17.930 52.532 1.00 1.00 C ATOM 3073 CG1 VAL 360 18.408 17.882 53.860 1.00 1.00 C ATOM 3074 CG2 VAL 360 20.454 17.155 52.622 1.00 1.00 C ATOM 3075 N ALA 361 18.912 18.776 49.540 1.00 1.00 N ATOM 3076 CA ALA 361 19.677 19.137 48.352 1.00 1.00 C ATOM 3077 C ALA 361 20.258 20.540 48.475 1.00 1.00 C ATOM 3078 O ALA 361 19.540 21.494 48.772 1.00 1.00 O ATOM 3079 H ALA 361 18.317 19.468 49.970 1.00 1.00 H ATOM 3080 CB ALA 361 18.809 19.027 47.109 1.00 1.00 C ATOM 3081 N TRP 362 21.561 20.659 48.244 1.00 1.00 N ATOM 3082 CA TRP 362 22.262 21.920 48.442 1.00 1.00 C ATOM 3083 C TRP 362 21.918 22.919 47.344 1.00 1.00 C ATOM 3084 O TRP 362 21.676 22.539 46.199 1.00 1.00 O ATOM 3085 H TRP 362 22.078 19.853 47.923 1.00 1.00 H ATOM 3086 CB TRP 362 23.774 21.689 48.486 1.00 1.00 C ATOM 3087 CG TRP 362 24.233 20.967 49.717 1.00 1.00 C ATOM 3088 CD1 TRP 362 23.443 20.416 50.681 1.00 1.00 C ATOM 3089 CD2 TRP 362 25.586 20.719 50.115 1.00 1.00 C ATOM 3090 NE1 TRP 362 24.219 19.839 51.656 1.00 1.00 N ATOM 3091 CE2 TRP 362 25.541 20.012 51.330 1.00 1.00 C ATOM 3092 CE3 TRP 362 26.835 21.026 49.560 1.00 1.00 C ATOM 3093 CZ2 TRP 362 26.685 19.609 51.999 1.00 1.00 C ATOM 3094 CZ3 TRP 362 27.982 20.622 50.230 1.00 1.00 C ATOM 3095 CH2 TRP 362 27.910 19.932 51.415 1.00 1.00 H ATOM 3096 HH2 TRP 362 28.834 19.632 51.908 1.00 1.00 H ATOM 3097 N ASN 363 21.895 24.200 47.701 1.00 1.00 N ATOM 3098 CA ASN 363 21.631 25.260 46.735 1.00 1.00 C ATOM 3099 C ASN 363 22.855 25.535 45.871 1.00 1.00 C ATOM 3100 O ASN 363 23.943 25.799 46.386 1.00 1.00 O ATOM 3101 H ASN 363 22.064 24.445 48.666 1.00 1.00 H ATOM 3102 CB ASN 363 21.177 26.536 47.421 1.00 1.00 C ATOM 3103 CG ASN 363 20.736 27.611 46.468 1.00 1.00 C ATOM 3104 OD1 ASN 363 20.954 27.521 45.254 1.00 1.00 O ATOM 3105 ND2 ASN 363 20.190 28.665 47.019 1.00 1.00 N ATOM 3106 HD21 ASN 363 19.873 29.420 46.445 1.00 1.00 H ATOM 3107 HD22 ASN 363 20.090 28.714 48.012 1.00 1.00 H ATOM 3108 N PRO 364 22.673 25.471 44.558 1.00 1.00 N ATOM 3109 CA PRO 364 23.772 25.677 43.620 1.00 1.00 C ATOM 3110 C PRO 364 24.392 27.057 43.792 1.00 1.00 C ATOM 3111 O PRO 364 25.590 27.240 43.579 1.00 1.00 O ATOM 3112 H PRO 364 22.673 25.471 44.558 1.00 1.00 H ATOM 3113 CB PRO 364 23.123 25.503 42.237 1.00 1.00 C ATOM 3114 CG PRO 364 21.657 25.749 42.462 1.00 1.00 C ATOM 3115 CD PRO 364 21.391 25.267 43.872 1.00 1.00 C ATOM 3116 N ASN 365 23.569 28.027 44.174 1.00 1.00 N ATOM 3117 CA ASN 365 24.038 29.391 44.389 1.00 1.00 C ATOM 3118 C ASN 365 24.950 29.475 45.607 1.00 1.00 C ATOM 3119 O ASN 365 26.036 30.050 45.542 1.00 1.00 O ATOM 3120 H ASN 365 22.592 27.815 44.319 1.00 1.00 H ATOM 3121 CB ASN 365 22.879 30.360 44.534 1.00 1.00 C ATOM 3122 CG ASN 365 22.158 30.639 43.245 1.00 1.00 C ATOM 3123 OD1 ASN 365 22.697 30.433 42.151 1.00 1.00 O ATOM 3124 ND2 ASN 365 20.973 31.182 43.366 1.00 1.00 N ATOM 3125 HD21 ASN 365 20.436 31.395 42.549 1.00 1.00 H ATOM 3126 HD22 ASN 365 20.606 31.383 44.273 1.00 1.00 H ATOM 3127 N LEU 366 24.499 28.899 46.716 1.00 1.00 N ATOM 3128 CA LEU 366 25.299 28.858 47.936 1.00 1.00 C ATOM 3129 C LEU 366 26.545 28.004 47.749 1.00 1.00 C ATOM 3130 O LEU 366 27.583 28.262 48.359 1.00 1.00 O ATOM 3131 H LEU 366 23.581 28.478 46.714 1.00 1.00 H ATOM 3132 CB LEU 366 24.457 28.326 49.104 1.00 1.00 C ATOM 3133 CG LEU 366 23.327 29.253 49.568 1.00 1.00 C ATOM 3134 CD1 LEU 366 22.471 28.548 50.612 1.00 1.00 C ATOM 3135 CD2 LEU 366 23.918 30.536 50.133 1.00 1.00 C ATOM 3136 N TRP 367 26.440 26.986 46.902 1.00 1.00 N ATOM 3137 CA TRP 367 27.578 26.133 46.584 1.00 1.00 C ATOM 3138 C TRP 367 28.678 26.919 45.886 1.00 1.00 C ATOM 3139 O TRP 367 29.852 26.812 46.240 1.00 1.00 O ATOM 3140 H TRP 367 25.547 26.799 46.467 1.00 1.00 H ATOM 3141 CB TRP 367 27.136 24.960 45.708 1.00 1.00 C ATOM 3142 CG TRP 367 28.223 23.961 45.452 1.00 1.00 C ATOM 3143 CD1 TRP 367 28.574 22.915 46.252 1.00 1.00 C ATOM 3144 CD2 TRP 367 29.101 23.913 44.320 1.00 1.00 C ATOM 3145 NE1 TRP 367 29.616 22.219 45.690 1.00 1.00 N ATOM 3146 CE2 TRP 367 29.956 22.813 44.501 1.00 1.00 C ATOM 3147 CE3 TRP 367 29.243 24.698 43.169 1.00 1.00 C ATOM 3148 CZ2 TRP 367 30.938 22.476 43.583 1.00 1.00 C ATOM 3149 CZ3 TRP 367 30.227 24.359 42.248 1.00 1.00 C ATOM 3150 CH2 TRP 367 31.051 23.279 42.448 1.00 1.00 H ATOM 3151 HH2 TRP 367 31.809 23.048 41.701 1.00 1.00 H ATOM 3152 N LYS 368 28.292 27.711 44.891 1.00 1.00 N ATOM 3153 CA LYS 368 29.244 28.544 44.162 1.00 1.00 C ATOM 3154 C LYS 368 29.916 29.552 45.087 1.00 1.00 C ATOM 3155 O LYS 368 31.092 29.873 44.921 1.00 1.00 O ATOM 3156 H LYS 368 27.316 27.737 44.632 1.00 1.00 H ATOM 3157 CB LYS 368 28.543 29.260 43.017 1.00 1.00 C ATOM 3158 CG LYS 368 28.192 28.360 41.844 1.00 1.00 C ATOM 3159 CD LYS 368 27.431 29.122 40.772 1.00 1.00 C ATOM 3160 CE LYS 368 27.100 28.227 39.588 1.00 1.00 C ATOM 3161 NZ LYS 368 26.273 28.935 38.572 1.00 1.00 N ATOM 3162 N LYS 369 29.160 30.048 46.062 1.00 1.00 N ATOM 3163 CA LYS 369 29.682 31.020 47.016 1.00 1.00 C ATOM 3164 C LYS 369 30.941 30.500 47.700 1.00 1.00 C ATOM 3165 O LYS 369 31.837 31.271 48.043 1.00 1.00 O ATOM 3166 H LYS 369 28.195 29.785 46.198 1.00 1.00 H ATOM 3167 CB LYS 369 28.619 31.362 48.049 1.00 1.00 C ATOM 3168 CG LYS 369 28.921 32.613 48.859 1.00 1.00 C ATOM 3169 CD LYS 369 27.895 32.818 49.961 1.00 1.00 C ATOM 3170 CE LYS 369 28.087 31.815 51.086 1.00 1.00 C ATOM 3171 NZ LYS 369 27.022 31.931 52.122 1.00 1.00 N ATOM 3172 N GLY 370 31.003 29.186 47.896 1.00 1.00 N ATOM 3173 CA GLY 370 32.152 28.561 48.540 1.00 1.00 C ATOM 3174 C GLY 370 31.762 27.245 49.205 1.00 1.00 C ATOM 3175 O GLY 370 32.401 26.808 50.162 1.00 1.00 O ATOM 3176 H GLY 370 30.268 28.553 47.615 1.00 1.00 H ATOM 3177 N THR 371 30.467 26.947 49.202 1.00 1.00 N ATOM 3178 CA THR 371 29.961 25.719 49.805 1.00 1.00 C ATOM 3179 C THR 371 29.985 25.802 51.327 1.00 1.00 C ATOM 3180 O THR 371 29.472 24.919 52.015 1.00 1.00 O ATOM 3181 H THR 371 29.765 27.545 48.788 1.00 1.00 H ATOM 3182 CB THR 371 30.777 24.527 49.326 1.00 1.00 C ATOM 3183 OG1 THR 371 30.587 24.350 47.916 1.00 1.00 O ATOM 3184 CG2 THR 371 30.363 23.266 50.069 1.00 1.00 C ATOM 3185 N ASN 372 29.220 26.739 51.876 1.00 1.00 N ATOM 3186 CA ASN 372 29.151 26.925 53.320 1.00 1.00 C ATOM 3187 C ASN 372 27.900 26.273 53.901 1.00 1.00 C ATOM 3188 O ASN 372 27.604 25.112 53.618 1.00 1.00 O ATOM 3189 H ASN 372 28.648 27.371 51.333 1.00 1.00 H ATOM 3190 CB ASN 372 29.184 28.406 53.660 1.00 1.00 C ATOM 3191 CG ASN 372 30.428 29.097 53.137 1.00 1.00 C ATOM 3192 OD1 ASN 372 31.535 28.554 53.333 1.00 1.00 O ATOM 3193 ND2 ASN 372 30.241 30.247 52.499 1.00 1.00 N ATOM 3194 HD21 ASN 372 29.336 30.604 52.389 1.00 1.00 H ATOM 3195 HD22 ASN 372 31.008 30.738 52.140 1.00 1.00 H ATOM 3196 N GLY 373 27.650 26.522 55.183 1.00 1.00 N ATOM 3197 CA GLY 373 26.487 25.960 55.859 1.00 1.00 C ATOM 3198 C GLY 373 25.206 26.246 55.083 1.00 1.00 C ATOM 3199 O GLY 373 25.131 27.214 54.325 1.00 1.00 O ATOM 3200 H GLY 373 28.242 27.106 55.756 1.00 1.00 H ATOM 3201 N TYR 374 24.258 25.319 55.152 1.00 1.00 N ATOM 3202 CA TYR 374 22.984 25.470 54.456 1.00 1.00 C ATOM 3203 C TYR 374 21.817 25.466 55.435 1.00 1.00 C ATOM 3204 O TYR 374 21.819 24.725 56.417 1.00 1.00 O ATOM 3205 H TYR 374 24.423 24.488 55.701 1.00 1.00 H ATOM 3206 CB TYR 374 22.804 24.358 53.421 1.00 1.00 C ATOM 3207 CG TYR 374 23.816 24.398 52.297 1.00 1.00 C ATOM 3208 CD1 TYR 374 25.110 23.933 52.486 1.00 1.00 C ATOM 3209 CD2 TYR 374 23.473 24.897 51.049 1.00 1.00 C ATOM 3210 CE1 TYR 374 26.038 23.968 51.462 1.00 1.00 C ATOM 3211 CE2 TYR 374 24.393 24.936 50.019 1.00 1.00 C ATOM 3212 CZ TYR 374 25.674 24.470 50.229 1.00 1.00 C ATOM 3213 OH TYR 374 26.593 24.505 49.206 1.00 1.00 H ATOM 3214 N PRO 375 20.821 26.301 55.160 1.00 1.00 N ATOM 3215 CA PRO 375 19.584 26.299 55.935 1.00 1.00 C ATOM 3216 C PRO 375 18.991 24.898 56.021 1.00 1.00 C ATOM 3217 O PRO 375 18.475 24.497 57.065 1.00 1.00 O ATOM 3218 H PRO 375 20.821 26.301 55.160 1.00 1.00 H ATOM 3219 CB PRO 375 18.665 27.271 55.178 1.00 1.00 C ATOM 3220 CG PRO 375 19.596 28.251 54.517 1.00 1.00 C ATOM 3221 CD PRO 375 20.714 27.125 53.949 1.00 1.00 C ATOM 3222 N ILE 376 19.066 24.161 54.919 1.00 1.00 N ATOM 3223 CA ILE 376 18.517 22.811 54.862 1.00 1.00 C ATOM 3224 C ILE 376 19.384 21.831 55.644 1.00 1.00 C ATOM 3225 O ILE 376 18.917 20.773 56.064 1.00 1.00 O ATOM 3226 H ILE 376 19.515 24.546 54.100 1.00 1.00 H ATOM 3227 CB ILE 376 18.381 22.317 53.411 1.00 1.00 C ATOM 3228 CG1 ILE 376 17.447 21.105 53.343 1.00 1.00 C ATOM 3229 CG2 ILE 376 19.746 21.974 52.834 1.00 1.00 C ATOM 3230 CD1 ILE 376 17.042 20.723 51.938 1.00 1.00 C ATOM 3231 N PHE 377 20.649 22.190 55.835 1.00 1.00 N ATOM 3232 CA PHE 377 21.538 21.430 56.706 1.00 1.00 C ATOM 3233 C PHE 377 21.148 21.596 58.170 1.00 1.00 C ATOM 3234 O PHE 377 21.191 20.640 58.946 1.00 1.00 O ATOM 3235 H PHE 377 21.004 23.010 55.364 1.00 1.00 H ATOM 3236 CB PHE 377 22.990 21.864 56.496 1.00 1.00 C ATOM 3237 CG PHE 377 23.976 21.109 57.341 1.00 1.00 C ATOM 3238 CD1 PHE 377 24.359 19.820 57.002 1.00 1.00 C ATOM 3239 CD2 PHE 377 24.521 21.685 58.479 1.00 1.00 C ATOM 3240 CE1 PHE 377 25.267 19.124 57.779 1.00 1.00 C ATOM 3241 CE2 PHE 377 25.428 20.992 59.256 1.00 1.00 C ATOM 3242 CZ PHE 377 25.801 19.710 58.906 1.00 1.00 C ATOM 3243 N GLN 378 20.765 22.812 58.541 1.00 1.00 N ATOM 3244 CA GLN 378 20.228 23.074 59.871 1.00 1.00 C ATOM 3245 C GLN 378 18.922 22.324 60.096 1.00 1.00 C ATOM 3246 O GLN 378 18.641 21.867 61.203 1.00 1.00 O ATOM 3247 H GLN 378 20.848 23.576 57.885 1.00 1.00 H ATOM 3248 CB GLN 378 20.003 24.575 60.073 1.00 1.00 C ATOM 3249 CG GLN 378 21.282 25.386 60.188 1.00 1.00 C ATOM 3250 CD GLN 378 21.015 26.876 60.292 1.00 1.00 C ATOM 3251 OE1 GLN 378 19.867 27.322 60.210 1.00 1.00 O ATOM 3252 NE2 GLN 378 22.076 27.655 60.469 1.00 1.00 N ATOM 3253 HE21 GLN 378 21.961 28.647 60.545 1.00 1.00 H ATOM 3254 HE22 GLN 378 22.989 27.252 60.527 1.00 1.00 H ATOM 3255 N TRP 379 18.127 22.200 59.037 1.00 1.00 N ATOM 3256 CA TRP 379 16.931 21.369 59.073 1.00 1.00 C ATOM 3257 C TRP 379 17.277 19.917 59.372 1.00 1.00 C ATOM 3258 O TRP 379 16.658 19.284 60.228 1.00 1.00 O ATOM 3259 H TRP 379 18.359 22.695 58.187 1.00 1.00 H ATOM 3260 CB TRP 379 16.176 21.465 57.746 1.00 1.00 C ATOM 3261 CG TRP 379 14.920 20.646 57.711 1.00 1.00 C ATOM 3262 CD1 TRP 379 13.689 21.023 58.157 1.00 1.00 C ATOM 3263 CD2 TRP 379 14.775 19.313 57.204 1.00 1.00 C ATOM 3264 NE1 TRP 379 12.785 20.008 57.960 1.00 1.00 N ATOM 3265 CE2 TRP 379 13.429 18.947 57.374 1.00 1.00 C ATOM 3266 CE3 TRP 379 15.656 18.396 56.620 1.00 1.00 C ATOM 3267 CZ2 TRP 379 12.940 17.709 56.987 1.00 1.00 C ATOM 3268 CZ3 TRP 379 15.167 17.154 56.231 1.00 1.00 C ATOM 3269 CH2 TRP 379 13.848 16.821 56.408 1.00 1.00 H ATOM 3270 HH2 TRP 379 13.504 15.837 56.088 1.00 1.00 H ATOM 3271 N SER 380 18.273 19.391 58.666 1.00 1.00 N ATOM 3272 CA SER 380 18.651 17.990 58.796 1.00 1.00 C ATOM 3273 C SER 380 19.402 17.741 60.099 1.00 1.00 C ATOM 3274 O SER 380 19.423 16.622 60.611 1.00 1.00 O ATOM 3275 H SER 380 18.781 19.979 58.021 1.00 1.00 H ATOM 3276 CB SER 380 19.495 17.564 57.610 1.00 1.00 C ATOM 3277 OG SER 380 20.731 18.223 57.581 1.00 1.00 O ATOM 3278 N GLU 381 20.018 18.791 60.629 1.00 1.00 N ATOM 3279 CA GLU 381 20.778 18.688 61.870 1.00 1.00 C ATOM 3280 C GLU 381 21.141 20.066 62.411 1.00 1.00 C ATOM 3281 O GLU 381 21.313 21.017 61.649 1.00 1.00 O ATOM 3282 H GLU 381 19.959 19.684 60.160 1.00 1.00 H ATOM 3283 CB GLU 381 22.045 17.858 61.654 1.00 1.00 C ATOM 3284 CG GLU 381 22.868 17.629 62.915 1.00 1.00 C ATOM 3285 CD GLU 381 24.079 16.785 62.629 1.00 1.00 C ATOM 3286 OE1 GLU 381 24.225 16.346 61.514 1.00 1.00 O ATOM 3287 OE2 GLU 381 24.916 16.672 63.494 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 99.89 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 93.80 40.9 22 100.0 22 ARMSMC SURFACE . . . . . . . . 93.53 42.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 126.99 10.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.91 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 85.97 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 59.47 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 89.61 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 73.56 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.04 68.2 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 52.51 75.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 23.64 85.7 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 55.58 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 7.50 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.77 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 63.15 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 5.30 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 59.77 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 4.48 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 4.48 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 4.48 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.41 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.41 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3037 CRMSCA SECONDARY STRUCTURE . . 7.94 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.45 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.20 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.42 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.10 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.53 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.82 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.36 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 12.73 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.97 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.68 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.58 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.01 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 9.60 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.29 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.66 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.654 0.752 0.376 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 6.721 0.759 0.379 11 100.0 11 ERRCA SURFACE . . . . . . . . 7.694 0.751 0.375 26 100.0 26 ERRCA BURIED . . . . . . . . 7.446 0.756 0.378 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.626 0.746 0.373 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.850 0.761 0.381 54 100.0 54 ERRMC SURFACE . . . . . . . . 7.744 0.751 0.376 129 100.0 129 ERRMC BURIED . . . . . . . . 6.962 0.719 0.359 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.461 0.801 0.400 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.951 0.815 0.407 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 9.459 0.808 0.404 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.805 0.805 0.403 119 99.2 120 ERRSC BURIED . . . . . . . . 6.357 0.747 0.373 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.058 0.773 0.387 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 8.126 0.785 0.392 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.341 0.779 0.389 223 99.6 224 ERRALL BURIED . . . . . . . . 6.950 0.729 0.365 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 8 20 31 31 DISTCA CA (P) 0.00 0.00 3.23 25.81 64.52 31 DISTCA CA (RMS) 0.00 0.00 2.24 4.04 6.70 DISTCA ALL (N) 0 2 15 41 128 253 254 DISTALL ALL (P) 0.00 0.79 5.91 16.14 50.39 254 DISTALL ALL (RMS) 0.00 1.66 2.42 3.53 6.73 DISTALL END of the results output