####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS186_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS186_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 352 - 368 4.90 9.30 LONGEST_CONTINUOUS_SEGMENT: 17 359 - 375 4.95 15.69 LONGEST_CONTINUOUS_SEGMENT: 17 360 - 376 4.91 14.66 LONGEST_CONTINUOUS_SEGMENT: 17 361 - 377 4.95 11.07 LCS_AVERAGE: 52.24 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 365 - 371 1.92 17.64 LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.93 16.82 LCS_AVERAGE: 17.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 365 - 369 0.79 17.87 LCS_AVERAGE: 10.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 0 3 12 0 0 3 4 4 4 5 5 7 7 7 17 20 21 24 25 27 28 28 28 LCS_GDT A 352 A 352 3 4 17 0 3 3 4 4 5 7 9 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT E 353 E 353 3 4 17 1 3 4 4 6 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT E 354 E 354 3 4 17 0 3 3 4 4 4 5 5 5 8 12 15 18 22 24 25 27 28 28 28 LCS_GDT L 355 L 355 0 4 17 0 0 3 4 4 5 7 9 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT G 356 G 356 0 4 17 0 1 3 4 6 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT N 357 N 357 0 3 17 0 2 4 4 6 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT I 358 I 358 3 5 17 0 3 3 4 6 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT I 359 I 359 3 5 17 0 3 3 4 5 7 7 8 10 10 15 17 20 22 24 25 27 28 28 28 LCS_GDT V 360 V 360 3 5 17 3 3 3 4 5 7 7 8 10 10 12 15 20 21 24 25 27 28 28 28 LCS_GDT A 361 A 361 3 5 17 3 3 4 4 6 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT W 362 W 362 3 5 17 3 3 4 6 7 8 9 11 12 14 15 17 20 22 24 25 27 28 28 28 LCS_GDT N 363 N 363 4 4 17 3 3 4 6 8 8 9 11 12 14 14 15 18 22 24 25 27 28 28 28 LCS_GDT P 364 P 364 4 4 17 1 3 4 4 5 7 11 12 12 14 14 15 17 22 24 25 27 28 28 28 LCS_GDT N 365 N 365 5 7 17 2 4 5 6 6 7 11 12 12 14 14 15 18 22 24 25 27 28 28 28 LCS_GDT L 366 L 366 5 7 17 1 4 5 6 6 8 11 12 12 14 15 17 20 22 24 25 27 28 28 28 LCS_GDT W 367 W 367 5 7 17 2 4 5 6 8 8 11 12 12 14 15 17 20 22 24 25 27 28 28 28 LCS_GDT K 368 K 368 5 7 17 3 3 5 6 8 8 11 12 12 14 14 17 20 22 24 25 27 28 28 28 LCS_GDT K 369 K 369 5 7 17 3 4 5 6 8 8 11 12 12 14 14 15 17 20 22 25 27 28 28 28 LCS_GDT G 370 G 370 4 7 17 3 4 5 6 6 8 9 12 12 14 14 14 17 20 21 24 27 28 28 28 LCS_GDT T 371 T 371 4 7 17 3 4 4 6 8 8 11 12 12 14 14 15 17 20 21 24 27 28 28 28 LCS_GDT N 372 N 372 4 7 17 3 4 4 6 8 8 11 12 12 14 14 15 17 20 21 24 24 24 24 27 LCS_GDT G 373 G 373 4 7 17 3 4 4 6 8 8 11 12 12 14 14 15 17 20 21 24 24 24 24 25 LCS_GDT Y 374 Y 374 4 7 17 0 4 4 6 8 8 11 12 12 14 14 14 15 20 21 24 24 24 24 26 LCS_GDT P 375 P 375 4 7 17 2 3 4 6 7 8 11 12 12 14 14 15 17 20 21 24 27 28 28 28 LCS_GDT I 376 I 376 3 7 17 2 3 4 4 5 7 8 9 10 13 14 17 20 22 24 25 27 28 28 28 LCS_GDT F 377 F 377 3 7 17 3 3 3 6 7 7 8 10 11 13 15 17 20 22 24 25 27 28 28 28 LCS_GDT Q 378 Q 378 3 7 12 3 3 3 6 7 7 8 10 10 12 15 17 20 22 24 25 27 28 28 28 LCS_GDT W 379 W 379 3 6 12 3 3 3 5 7 7 8 10 10 12 15 17 20 22 24 25 27 28 28 28 LCS_GDT S 380 S 380 3 4 12 3 3 3 3 3 4 5 6 7 10 12 14 20 22 24 25 27 28 28 28 LCS_GDT E 381 E 381 3 4 12 3 3 3 3 3 4 8 10 10 12 15 17 20 22 24 25 26 28 28 28 LCS_AVERAGE LCS_A: 26.78 ( 10.30 17.79 52.24 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 8 8 11 12 12 14 15 17 20 22 24 25 27 28 28 28 GDT PERCENT_AT 9.68 12.90 16.13 19.35 25.81 25.81 35.48 38.71 38.71 45.16 48.39 54.84 64.52 70.97 77.42 80.65 87.10 90.32 90.32 90.32 GDT RMS_LOCAL 0.06 0.56 0.79 1.11 1.92 1.82 2.64 2.82 2.82 3.31 4.16 4.50 4.81 5.12 5.39 5.60 6.38 6.45 6.45 6.45 GDT RMS_ALL_AT 21.46 16.12 17.87 17.74 15.55 15.52 16.15 16.28 16.28 15.69 9.52 9.14 9.08 9.34 9.22 8.88 7.82 7.89 7.89 7.89 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 29.234 0 0.388 0.645 29.234 0.000 0.000 LGA A 352 A 352 28.209 0 0.555 0.558 29.676 0.000 0.000 LGA E 353 E 353 25.237 0 0.573 1.324 26.861 0.000 0.000 LGA E 354 E 354 27.855 0 0.360 1.038 32.665 0.000 0.000 LGA L 355 L 355 25.736 0 0.789 0.694 32.193 0.000 0.000 LGA G 356 G 356 20.708 0 0.578 0.578 21.970 0.000 0.000 LGA N 357 N 357 18.463 0 0.450 0.546 22.655 0.000 0.000 LGA I 358 I 358 17.966 0 0.520 0.583 19.430 0.000 0.000 LGA I 359 I 359 14.838 0 0.655 0.947 16.844 0.000 0.000 LGA V 360 V 360 11.308 0 0.534 0.824 12.835 0.000 0.000 LGA A 361 A 361 12.057 0 0.859 0.777 14.717 0.238 0.190 LGA W 362 W 362 7.353 0 0.620 0.902 11.319 9.524 5.238 LGA N 363 N 363 6.031 0 0.522 0.758 8.578 21.786 15.833 LGA P 364 P 364 3.176 0 0.272 0.272 4.892 50.833 54.694 LGA N 365 N 365 3.164 0 0.562 0.481 7.118 63.333 41.667 LGA L 366 L 366 1.951 0 0.804 1.022 3.789 59.524 67.500 LGA W 367 W 367 1.646 0 0.216 1.375 11.700 58.571 23.673 LGA K 368 K 368 2.063 0 0.348 0.668 2.991 64.881 61.429 LGA K 369 K 369 3.408 0 0.301 1.105 7.863 46.667 31.905 LGA G 370 G 370 4.049 0 0.223 0.223 4.049 48.810 48.810 LGA T 371 T 371 1.971 0 0.039 1.151 6.163 70.833 55.374 LGA N 372 N 372 1.398 0 0.747 1.322 3.416 73.690 69.405 LGA G 373 G 373 2.697 0 0.545 0.545 3.329 57.262 57.262 LGA Y 374 Y 374 3.259 0 0.077 0.307 10.346 48.571 23.492 LGA P 375 P 375 3.588 0 0.250 0.355 6.636 33.810 42.789 LGA I 376 I 376 8.879 0 0.558 1.268 13.569 4.286 2.143 LGA F 377 F 377 12.247 0 0.209 0.604 16.919 0.000 0.000 LGA Q 378 Q 378 16.944 0 0.653 1.320 20.802 0.000 0.000 LGA W 379 W 379 23.113 0 0.602 1.195 26.143 0.000 0.000 LGA S 380 S 380 26.401 0 0.072 0.646 28.008 0.000 0.000 LGA E 381 E 381 31.173 0 0.659 1.175 32.929 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.516 7.476 8.817 22.988 19.400 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.82 37.903 32.349 0.411 LGA_LOCAL RMSD: 2.821 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.280 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.516 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.540364 * X + 0.617107 * Y + 0.572002 * Z + 48.555103 Y_new = 0.005033 * X + -0.677413 * Y + 0.735586 * Z + 39.927544 Z_new = 0.841417 * X + 0.400363 * Y + 0.362944 * Z + 11.549599 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.132279 -0.999899 0.834381 [DEG: 179.4664 -57.2900 47.8065 ] ZXZ: 2.480652 1.199371 1.126679 [DEG: 142.1309 68.7189 64.5540 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS186_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS186_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.82 32.349 7.52 REMARK ---------------------------------------------------------- MOLECULE T0537TS186_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 3113 N SER 351 29.160 13.794 66.114 1.00 50.00 N ATOM 3114 CA SER 351 28.478 14.541 67.517 1.00 50.00 C ATOM 3115 C SER 351 28.398 14.587 69.029 1.00 50.00 C ATOM 3116 O SER 351 29.203 13.951 69.714 1.00 50.00 O ATOM 3117 H SER 351 28.621 13.439 65.487 1.00 50.00 H ATOM 3118 CB SER 351 26.951 14.462 67.478 1.00 50.00 C ATOM 3119 HG SER 351 26.605 15.812 68.717 1.00 50.00 H ATOM 3120 OG SER 351 26.381 15.016 68.651 1.00 50.00 O ATOM 3121 N ALA 352 27.442 15.336 69.560 1.00 50.00 N ATOM 3122 CA ALA 352 27.095 15.302 70.949 1.00 50.00 C ATOM 3123 C ALA 352 25.651 15.429 71.449 1.00 50.00 C ATOM 3124 O ALA 352 24.829 16.100 70.835 1.00 50.00 O ATOM 3125 H ALA 352 27.003 15.886 69.000 1.00 50.00 H ATOM 3126 CB ALA 352 27.832 16.396 71.707 1.00 50.00 C ATOM 3127 N GLU 353 25.414 14.851 72.628 1.00 50.00 N ATOM 3128 CA GLU 353 24.173 14.850 73.333 1.00 50.00 C ATOM 3129 C GLU 353 24.280 13.463 73.935 1.00 50.00 C ATOM 3130 O GLU 353 23.672 12.533 73.411 1.00 50.00 O ATOM 3131 H GLU 353 26.130 14.433 72.978 1.00 50.00 H ATOM 3132 CB GLU 353 23.009 15.098 72.371 1.00 50.00 C ATOM 3133 CD GLU 353 21.517 16.361 73.971 1.00 50.00 C ATOM 3134 CG GLU 353 21.649 15.166 73.047 1.00 50.00 C ATOM 3135 OE1 GLU 353 22.319 17.309 73.835 1.00 50.00 O ATOM 3136 OE2 GLU 353 20.614 16.348 74.832 1.00 50.00 O ATOM 3137 N GLU 354 25.029 13.311 75.029 1.00 50.00 N ATOM 3138 CA GLU 354 24.420 12.974 76.612 1.00 50.00 C ATOM 3139 C GLU 354 23.950 11.575 76.195 1.00 50.00 C ATOM 3140 O GLU 354 23.031 11.000 76.816 1.00 50.00 O ATOM 3141 H GLU 354 25.916 13.397 74.896 1.00 50.00 H ATOM 3142 CB GLU 354 23.382 14.022 77.021 1.00 50.00 C ATOM 3143 CD GLU 354 22.883 16.444 77.534 1.00 50.00 C ATOM 3144 CG GLU 354 23.920 15.444 77.065 1.00 50.00 C ATOM 3145 OE1 GLU 354 21.724 16.037 77.760 1.00 50.00 O ATOM 3146 OE2 GLU 354 23.229 17.636 77.676 1.00 50.00 O ATOM 3147 N LEU 355 24.592 10.996 75.160 1.00 50.00 N ATOM 3148 CA LEU 355 25.587 12.491 73.010 1.00 50.00 C ATOM 3149 C LEU 355 25.537 11.734 71.683 1.00 50.00 C ATOM 3150 O LEU 355 25.995 10.590 71.549 1.00 50.00 O ATOM 3151 H LEU 355 24.698 10.103 75.174 1.00 50.00 H ATOM 3152 CB LEU 355 27.029 12.927 73.282 1.00 50.00 C ATOM 3153 CG LEU 355 27.247 13.823 74.503 1.00 50.00 C ATOM 3154 CD1 LEU 355 28.730 14.060 74.738 1.00 50.00 C ATOM 3155 CD2 LEU 355 26.519 15.148 74.334 1.00 50.00 C ATOM 3156 N GLY 356 24.880 12.334 70.698 1.00 50.00 N ATOM 3157 CA GLY 356 26.390 12.793 69.290 1.00 50.00 C ATOM 3158 C GLY 356 27.215 13.702 68.403 1.00 50.00 C ATOM 3159 O GLY 356 26.799 14.793 67.999 1.00 50.00 O ATOM 3160 H GLY 356 24.024 12.558 70.530 1.00 50.00 H ATOM 3161 N ASN 357 28.400 13.219 68.101 1.00 50.00 N ATOM 3162 CA ASN 357 28.262 13.846 66.155 1.00 50.00 C ATOM 3163 C ASN 357 28.419 13.808 64.651 1.00 50.00 C ATOM 3164 O ASN 357 27.536 13.338 63.941 1.00 50.00 O ATOM 3165 H ASN 357 29.136 12.784 68.383 1.00 50.00 H ATOM 3166 CB ASN 357 28.940 15.206 65.981 1.00 50.00 C ATOM 3167 CG ASN 357 28.171 16.330 66.648 1.00 50.00 C ATOM 3168 OD1 ASN 357 26.956 16.445 66.488 1.00 50.00 O ATOM 3169 HD21 ASN 357 28.471 17.849 67.818 1.00 50.00 H ATOM 3170 HD22 ASN 357 29.766 17.046 67.492 1.00 50.00 H ATOM 3171 ND2 ASN 357 28.879 17.165 67.400 1.00 50.00 N ATOM 3172 N ILE 358 29.535 14.318 64.162 1.00 50.00 N ATOM 3173 CA ILE 358 29.444 14.787 62.673 1.00 50.00 C ATOM 3174 C ILE 358 29.013 15.969 61.841 1.00 50.00 C ATOM 3175 O ILE 358 27.877 16.423 62.012 1.00 50.00 O ATOM 3176 H ILE 358 30.307 14.406 64.615 1.00 50.00 H ATOM 3177 CB ILE 358 28.597 13.817 61.828 1.00 50.00 C ATOM 3178 CD1 ILE 358 28.362 11.359 61.194 1.00 50.00 C ATOM 3179 CG1 ILE 358 29.241 12.429 61.804 1.00 50.00 C ATOM 3180 CG2 ILE 358 28.394 14.371 60.426 1.00 50.00 C ATOM 3181 N ILE 359 29.900 16.405 60.958 1.00 50.00 N ATOM 3182 CA ILE 359 29.406 17.091 59.691 1.00 50.00 C ATOM 3183 C ILE 359 29.105 15.819 58.915 1.00 50.00 C ATOM 3184 O ILE 359 29.894 14.886 58.917 1.00 50.00 O ATOM 3185 H ILE 359 30.782 16.302 61.098 1.00 50.00 H ATOM 3186 CB ILE 359 30.472 18.040 59.110 1.00 50.00 C ATOM 3187 CD1 ILE 359 28.911 19.974 58.540 1.00 50.00 C ATOM 3188 CG1 ILE 359 29.863 18.919 58.017 1.00 50.00 C ATOM 3189 CG2 ILE 359 31.669 17.251 58.603 1.00 50.00 C ATOM 3190 N VAL 360 27.957 15.786 58.249 1.00 50.00 N ATOM 3191 CA VAL 360 28.437 16.537 56.024 1.00 50.00 C ATOM 3192 C VAL 360 28.107 17.532 57.143 1.00 50.00 C ATOM 3193 O VAL 360 28.005 18.754 56.902 1.00 50.00 O ATOM 3194 H VAL 360 27.117 15.553 58.474 1.00 50.00 H ATOM 3195 CB VAL 360 27.483 15.903 54.996 1.00 50.00 C ATOM 3196 CG1 VAL 360 26.093 16.511 55.113 1.00 50.00 C ATOM 3197 CG2 VAL 360 28.027 16.076 53.586 1.00 50.00 C ATOM 3198 N ALA 361 27.965 17.031 58.387 1.00 50.00 N ATOM 3199 CA ALA 361 28.843 16.099 59.833 1.00 50.00 C ATOM 3200 C ALA 361 27.383 15.644 59.842 1.00 50.00 C ATOM 3201 O ALA 361 26.457 16.448 60.015 1.00 50.00 O ATOM 3202 H ALA 361 27.105 17.284 58.471 1.00 50.00 H ATOM 3203 CB ALA 361 29.468 17.092 60.802 1.00 50.00 C ATOM 3204 N TRP 362 27.207 14.330 59.691 1.00 50.00 N ATOM 3205 CA TRP 362 26.052 13.602 59.341 1.00 50.00 C ATOM 3206 C TRP 362 25.538 13.324 60.749 1.00 50.00 C ATOM 3207 O TRP 362 25.915 12.298 61.285 1.00 50.00 O ATOM 3208 H TRP 362 27.980 13.897 59.850 1.00 50.00 H ATOM 3209 CB TRP 362 26.422 12.384 58.493 1.00 50.00 C ATOM 3210 HB2 TRP 362 25.586 11.956 58.057 1.00 50.00 H ATOM 3211 HB3 TRP 362 27.233 11.879 58.788 1.00 50.00 H ATOM 3212 CG TRP 362 26.974 12.738 57.146 1.00 50.00 C ATOM 3213 CD1 TRP 362 28.170 13.342 56.883 1.00 50.00 C ATOM 3214 HE1 TRP 362 29.077 13.896 55.118 1.00 50.00 H ATOM 3215 NE1 TRP 362 28.332 13.504 55.528 1.00 50.00 N ATOM 3216 CD2 TRP 362 26.353 12.507 55.876 1.00 50.00 C ATOM 3217 CE2 TRP 362 27.228 12.997 54.889 1.00 50.00 C ATOM 3218 CH2 TRP 362 25.740 12.366 53.167 1.00 50.00 C ATOM 3219 CZ2 TRP 362 26.931 12.933 53.529 1.00 50.00 C ATOM 3220 CE3 TRP 362 25.141 11.933 55.477 1.00 50.00 C ATOM 3221 CZ3 TRP 362 24.852 11.871 54.127 1.00 50.00 C ATOM 3222 N ASN 363 24.481 14.037 61.106 1.00 50.00 N ATOM 3223 CA ASN 363 24.796 14.941 62.725 1.00 50.00 C ATOM 3224 C ASN 363 23.955 13.659 62.762 1.00 50.00 C ATOM 3225 O ASN 363 23.849 12.996 63.815 1.00 50.00 O ATOM 3226 H ASN 363 23.689 14.126 60.687 1.00 50.00 H ATOM 3227 CB ASN 363 24.308 16.389 62.634 1.00 50.00 C ATOM 3228 CG ASN 363 24.746 17.227 63.820 1.00 50.00 C ATOM 3229 OD1 ASN 363 25.914 17.598 63.932 1.00 50.00 O ATOM 3230 HD21 ASN 363 24.013 18.021 65.432 1.00 50.00 H ATOM 3231 HD22 ASN 363 22.965 17.234 64.590 1.00 50.00 H ATOM 3232 ND2 ASN 363 23.807 17.526 64.710 1.00 50.00 N ATOM 3233 N PRO 364 23.369 13.277 61.610 1.00 50.00 N ATOM 3234 CA PRO 364 24.044 12.372 60.057 1.00 50.00 C ATOM 3235 C PRO 364 23.530 13.555 59.277 1.00 50.00 C ATOM 3236 O PRO 364 23.712 13.611 58.044 1.00 50.00 O ATOM 3237 CB PRO 364 23.279 11.047 60.038 1.00 50.00 C ATOM 3238 CD PRO 364 22.587 12.170 62.036 1.00 50.00 C ATOM 3239 CG PRO 364 22.898 10.817 61.462 1.00 50.00 C ATOM 3240 N ASN 365 22.872 14.504 59.933 1.00 50.00 N ATOM 3241 CA ASN 365 22.111 15.595 59.614 1.00 50.00 C ATOM 3242 C ASN 365 22.564 16.896 58.942 1.00 50.00 C ATOM 3243 O ASN 365 23.318 17.667 59.538 1.00 50.00 O ATOM 3244 H ASN 365 23.021 14.297 60.797 1.00 50.00 H ATOM 3245 CB ASN 365 21.409 16.141 60.859 1.00 50.00 C ATOM 3246 CG ASN 365 20.362 15.188 61.402 1.00 50.00 C ATOM 3247 OD1 ASN 365 19.871 14.317 60.686 1.00 50.00 O ATOM 3248 HD21 ASN 365 19.401 14.814 63.047 1.00 50.00 H ATOM 3249 HD22 ASN 365 20.402 16.003 63.164 1.00 50.00 H ATOM 3250 ND2 ASN 365 20.018 15.353 62.674 1.00 50.00 N ATOM 3251 N LEU 366 22.084 17.147 57.724 1.00 50.00 N ATOM 3252 CA LEU 366 23.026 18.014 56.850 1.00 50.00 C ATOM 3253 C LEU 366 21.520 18.237 56.687 1.00 50.00 C ATOM 3254 O LEU 366 20.845 17.439 56.074 1.00 50.00 O ATOM 3255 H LEU 366 21.296 16.864 57.393 1.00 50.00 H ATOM 3256 CB LEU 366 23.931 17.125 55.995 1.00 50.00 C ATOM 3257 CG LEU 366 25.056 17.834 55.235 1.00 50.00 C ATOM 3258 CD1 LEU 366 24.491 18.678 54.104 1.00 50.00 C ATOM 3259 CD2 LEU 366 25.880 18.697 56.179 1.00 50.00 C ATOM 3260 N TRP 367 20.955 19.279 57.285 1.00 50.00 N ATOM 3261 CA TRP 367 19.788 19.727 57.781 1.00 50.00 C ATOM 3262 C TRP 367 18.872 20.930 57.754 1.00 50.00 C ATOM 3263 O TRP 367 19.398 22.051 57.690 1.00 50.00 O ATOM 3264 H TRP 367 21.688 19.799 57.320 1.00 50.00 H ATOM 3265 CB TRP 367 19.813 19.708 59.311 1.00 50.00 C ATOM 3266 HB2 TRP 367 20.285 18.860 59.672 1.00 50.00 H ATOM 3267 HB3 TRP 367 19.053 20.174 59.765 1.00 50.00 H ATOM 3268 CG TRP 367 20.875 20.583 59.904 1.00 50.00 C ATOM 3269 CD1 TRP 367 22.165 20.233 60.181 1.00 50.00 C ATOM 3270 HE1 TRP 367 23.740 21.291 60.985 1.00 50.00 H ATOM 3271 NE1 TRP 367 22.841 21.300 60.719 1.00 50.00 N ATOM 3272 CD2 TRP 367 20.737 21.955 60.294 1.00 50.00 C ATOM 3273 CE2 TRP 367 21.984 22.369 60.798 1.00 50.00 C ATOM 3274 CH2 TRP 367 21.156 24.538 61.232 1.00 50.00 C ATOM 3275 CZ2 TRP 367 22.205 23.662 61.271 1.00 50.00 C ATOM 3276 CE3 TRP 367 19.683 22.871 60.266 1.00 50.00 C ATOM 3277 CZ3 TRP 367 19.906 24.151 60.736 1.00 50.00 C ATOM 3278 N LYS 368 17.538 20.776 57.754 1.00 50.00 N ATOM 3279 CA LYS 368 16.699 21.502 58.960 1.00 50.00 C ATOM 3280 C LYS 368 15.308 21.672 59.535 1.00 50.00 C ATOM 3281 O LYS 368 14.430 20.839 59.295 1.00 50.00 O ATOM 3282 H LYS 368 17.103 20.298 57.126 1.00 50.00 H ATOM 3283 CB LYS 368 16.904 23.018 58.918 1.00 50.00 C ATOM 3284 CD LYS 368 16.522 25.256 59.986 1.00 50.00 C ATOM 3285 CE LYS 368 15.830 26.009 61.112 1.00 50.00 C ATOM 3286 CG LYS 368 16.219 23.768 60.049 1.00 50.00 C ATOM 3287 HZ1 LYS 368 15.692 27.877 61.730 1.00 50.00 H ATOM 3288 HZ2 LYS 368 15.823 27.800 60.285 1.00 50.00 H ATOM 3289 HZ3 LYS 368 16.989 27.606 61.131 1.00 50.00 H ATOM 3290 NZ LYS 368 16.112 27.470 61.060 1.00 50.00 N ATOM 3291 N LYS 369 15.096 22.736 60.298 1.00 50.00 N ATOM 3292 CA LYS 369 13.775 22.959 60.901 1.00 50.00 C ATOM 3293 C LYS 369 13.161 24.273 61.361 1.00 50.00 C ATOM 3294 O LYS 369 13.448 24.747 62.459 1.00 50.00 O ATOM 3295 H LYS 369 15.763 23.321 60.446 1.00 50.00 H ATOM 3296 CB LYS 369 13.619 22.124 62.174 1.00 50.00 C ATOM 3297 CD LYS 369 12.135 21.311 64.027 1.00 50.00 C ATOM 3298 CE LYS 369 10.761 21.408 64.669 1.00 50.00 C ATOM 3299 CG LYS 369 12.245 22.223 62.817 1.00 50.00 C ATOM 3300 HZ1 LYS 369 9.821 20.594 66.201 1.00 50.00 H ATOM 3301 HZ2 LYS 369 11.243 20.737 66.461 1.00 50.00 H ATOM 3302 HZ3 LYS 369 10.765 19.668 65.600 1.00 50.00 H ATOM 3303 NZ LYS 369 10.634 20.512 65.852 1.00 50.00 N ATOM 3304 N GLY 370 12.331 24.865 60.513 1.00 50.00 N ATOM 3305 CA GLY 370 11.576 26.016 60.744 1.00 50.00 C ATOM 3306 C GLY 370 10.992 25.934 59.336 1.00 50.00 C ATOM 3307 O GLY 370 11.673 26.276 58.358 1.00 50.00 O ATOM 3308 H GLY 370 12.281 24.446 59.718 1.00 50.00 H ATOM 3309 N THR 371 9.765 25.434 59.219 1.00 50.00 N ATOM 3310 CA THR 371 8.516 25.116 58.577 1.00 50.00 C ATOM 3311 C THR 371 8.540 24.809 57.088 1.00 50.00 C ATOM 3312 O THR 371 7.721 24.028 56.603 1.00 50.00 O ATOM 3313 H THR 371 9.908 25.185 60.072 1.00 50.00 H ATOM 3314 CB THR 371 7.490 26.252 58.748 1.00 50.00 C ATOM 3315 HG1 THR 371 7.923 26.652 60.532 1.00 50.00 H ATOM 3316 OG1 THR 371 7.220 26.450 60.141 1.00 50.00 O ATOM 3317 CG2 THR 371 6.187 25.901 58.045 1.00 50.00 C ATOM 3318 N ASN 372 9.476 25.402 56.360 1.00 50.00 N ATOM 3319 CA ASN 372 9.498 25.409 54.936 1.00 50.00 C ATOM 3320 C ASN 372 10.103 24.020 54.760 1.00 50.00 C ATOM 3321 O ASN 372 10.657 23.447 55.702 1.00 50.00 O ATOM 3322 H ASN 372 10.125 25.820 56.822 1.00 50.00 H ATOM 3323 CB ASN 372 10.295 26.609 54.419 1.00 50.00 C ATOM 3324 CG ASN 372 9.600 27.929 54.684 1.00 50.00 C ATOM 3325 OD1 ASN 372 8.410 28.082 54.407 1.00 50.00 O ATOM 3326 HD21 ASN 372 9.976 29.692 55.402 1.00 50.00 H ATOM 3327 HD22 ASN 372 11.208 28.736 55.413 1.00 50.00 H ATOM 3328 ND2 ASN 372 10.341 28.889 55.225 1.00 50.00 N ATOM 3329 N GLY 373 10.005 23.477 53.550 1.00 50.00 N ATOM 3330 CA GLY 373 11.031 22.163 53.601 1.00 50.00 C ATOM 3331 C GLY 373 12.429 21.597 53.490 1.00 50.00 C ATOM 3332 O GLY 373 12.884 21.305 52.377 1.00 50.00 O ATOM 3333 H GLY 373 9.545 23.661 52.797 1.00 50.00 H ATOM 3334 N TYR 374 13.100 21.397 54.620 1.00 50.00 N ATOM 3335 CA TYR 374 14.370 20.566 54.584 1.00 50.00 C ATOM 3336 C TYR 374 14.294 19.179 55.189 1.00 50.00 C ATOM 3337 O TYR 374 13.705 18.998 56.258 1.00 50.00 O ATOM 3338 H TYR 374 12.812 21.745 55.399 1.00 50.00 H ATOM 3339 CB TYR 374 15.511 21.300 55.291 1.00 50.00 C ATOM 3340 CG TYR 374 15.966 22.555 54.580 1.00 50.00 C ATOM 3341 HH TYR 374 17.473 26.567 53.203 1.00 50.00 H ATOM 3342 OH TYR 374 17.220 26.012 52.639 1.00 50.00 O ATOM 3343 CZ TYR 374 16.804 24.867 53.280 1.00 50.00 C ATOM 3344 CD1 TYR 374 16.441 23.646 55.297 1.00 50.00 C ATOM 3345 CE1 TYR 374 16.859 24.796 54.655 1.00 50.00 C ATOM 3346 CD2 TYR 374 15.918 22.645 53.195 1.00 50.00 C ATOM 3347 CE2 TYR 374 16.331 23.787 52.537 1.00 50.00 C ATOM 3348 N PRO 375 14.876 18.195 54.518 1.00 50.00 N ATOM 3349 CA PRO 375 15.962 17.185 55.144 1.00 50.00 C ATOM 3350 C PRO 375 16.582 15.827 54.835 1.00 50.00 C ATOM 3351 O PRO 375 16.226 15.276 53.808 1.00 50.00 O ATOM 3352 CB PRO 375 15.401 16.850 56.527 1.00 50.00 C ATOM 3353 CD PRO 375 13.726 18.150 55.417 1.00 50.00 C ATOM 3354 CG PRO 375 13.925 17.016 56.383 1.00 50.00 C ATOM 3355 N ILE 376 17.167 15.236 55.865 1.00 50.00 N ATOM 3356 CA ILE 376 17.911 13.973 55.733 1.00 50.00 C ATOM 3357 C ILE 376 16.694 13.073 56.026 1.00 50.00 C ATOM 3358 O ILE 376 16.571 11.990 55.473 1.00 50.00 O ATOM 3359 H ILE 376 17.098 15.636 56.668 1.00 50.00 H ATOM 3360 CB ILE 376 19.107 13.919 56.703 1.00 50.00 C ATOM 3361 CD1 ILE 376 20.708 12.978 54.956 1.00 50.00 C ATOM 3362 CG1 ILE 376 20.060 12.788 56.311 1.00 50.00 C ATOM 3363 CG2 ILE 376 18.623 13.780 58.138 1.00 50.00 C ATOM 3364 N PHE 377 15.799 13.518 56.904 1.00 50.00 N ATOM 3365 CA PHE 377 14.380 12.648 56.379 1.00 50.00 C ATOM 3366 C PHE 377 13.925 12.727 54.917 1.00 50.00 C ATOM 3367 O PHE 377 14.603 13.346 54.070 1.00 50.00 O ATOM 3368 H PHE 377 15.749 14.080 57.605 1.00 50.00 H ATOM 3369 CB PHE 377 13.159 13.071 57.198 1.00 50.00 C ATOM 3370 CG PHE 377 13.222 12.653 58.640 1.00 50.00 C ATOM 3371 CZ PHE 377 13.336 11.875 61.306 1.00 50.00 C ATOM 3372 CD1 PHE 377 13.715 13.515 59.604 1.00 50.00 C ATOM 3373 CE1 PHE 377 13.773 13.131 60.930 1.00 50.00 C ATOM 3374 CD2 PHE 377 12.789 11.399 59.031 1.00 50.00 C ATOM 3375 CE2 PHE 377 12.846 11.014 60.358 1.00 50.00 C ATOM 3376 N GLN 378 12.758 12.127 54.605 1.00 50.00 N ATOM 3377 CA GLN 378 11.055 11.381 55.164 1.00 50.00 C ATOM 3378 C GLN 378 11.079 9.885 54.863 1.00 50.00 C ATOM 3379 O GLN 378 11.239 9.426 53.716 1.00 50.00 O ATOM 3380 H GLN 378 12.985 12.126 53.733 1.00 50.00 H ATOM 3381 CB GLN 378 9.901 12.087 54.451 1.00 50.00 C ATOM 3382 CD GLN 378 8.134 11.762 56.227 1.00 50.00 C ATOM 3383 CG GLN 378 8.529 11.523 54.783 1.00 50.00 C ATOM 3384 OE1 GLN 378 8.033 12.905 56.672 1.00 50.00 O ATOM 3385 HE21 GLN 378 7.674 10.767 57.829 1.00 50.00 H ATOM 3386 HE22 GLN 378 7.996 9.862 56.600 1.00 50.00 H ATOM 3387 NE2 GLN 378 7.909 10.681 56.964 1.00 50.00 N ATOM 3388 N TRP 379 11.017 9.135 55.960 1.00 50.00 N ATOM 3389 CA TRP 379 10.885 7.625 55.878 1.00 50.00 C ATOM 3390 C TRP 379 9.568 6.888 55.761 1.00 50.00 C ATOM 3391 O TRP 379 8.546 7.325 56.301 1.00 50.00 O ATOM 3392 H TRP 379 11.056 9.540 56.764 1.00 50.00 H ATOM 3393 CB TRP 379 11.529 6.964 57.098 1.00 50.00 C ATOM 3394 HB2 TRP 379 11.612 5.939 56.975 1.00 50.00 H ATOM 3395 HB3 TRP 379 11.374 7.421 57.974 1.00 50.00 H ATOM 3396 CG TRP 379 13.020 7.105 57.141 1.00 50.00 C ATOM 3397 CD1 TRP 379 13.731 8.104 57.740 1.00 50.00 C ATOM 3398 HE1 TRP 379 15.756 8.455 57.895 1.00 50.00 H ATOM 3399 NE1 TRP 379 15.078 7.896 57.569 1.00 50.00 N ATOM 3400 CD2 TRP 379 13.983 6.219 56.559 1.00 50.00 C ATOM 3401 CE2 TRP 379 15.257 6.743 56.846 1.00 50.00 C ATOM 3402 CH2 TRP 379 16.314 4.964 55.707 1.00 50.00 C ATOM 3403 CZ2 TRP 379 16.431 6.122 56.423 1.00 50.00 C ATOM 3404 CE3 TRP 379 13.892 5.033 55.824 1.00 50.00 C ATOM 3405 CZ3 TRP 379 15.060 4.422 55.408 1.00 50.00 C ATOM 3406 N SER 380 9.587 5.783 55.026 1.00 50.00 N ATOM 3407 CA SER 380 8.400 4.969 54.702 1.00 50.00 C ATOM 3408 C SER 380 8.037 4.326 56.156 1.00 50.00 C ATOM 3409 O SER 380 8.913 3.798 56.835 1.00 50.00 O ATOM 3410 H SER 380 10.397 5.539 54.719 1.00 50.00 H ATOM 3411 CB SER 380 8.730 3.951 53.609 1.00 50.00 C ATOM 3412 HG SER 380 6.978 3.563 53.099 1.00 50.00 H ATOM 3413 OG SER 380 7.623 3.104 53.349 1.00 50.00 O ATOM 3414 N GLU 381 6.764 4.375 56.535 1.00 50.00 N ATOM 3415 CA GLU 381 6.413 3.824 57.754 1.00 50.00 C ATOM 3416 C GLU 381 5.255 2.744 57.173 1.00 50.00 C ATOM 3417 O GLU 381 4.959 1.958 58.071 1.00 50.00 O ATOM 3418 H GLU 381 6.137 4.757 56.016 1.00 50.00 H ATOM 3419 OXT GLU 381 5.006 3.021 56.003 1.00 50.00 O ATOM 3420 CB GLU 381 5.929 4.913 58.715 1.00 50.00 C ATOM 3421 CD GLU 381 6.483 6.986 60.046 1.00 50.00 C ATOM 3422 CG GLU 381 6.989 5.943 59.069 1.00 50.00 C ATOM 3423 OE1 GLU 381 5.279 6.955 60.378 1.00 50.00 O ATOM 3424 OE2 GLU 381 7.291 7.835 60.480 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 96.70 23.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 117.03 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 96.61 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 97.13 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.81 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 82.16 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 50.29 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 82.32 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 86.48 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.49 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 88.74 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 68.67 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 83.59 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 82.44 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 33.51 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 34.86 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 20.72 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 33.51 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.52 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.52 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.52 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.52 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.52 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2425 CRMSCA SECONDARY STRUCTURE . . 6.59 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.55 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.34 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.57 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.67 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.65 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.12 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.98 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 9.76 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.26 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.01 120 100.0 120 CRMSSC BURIED . . . . . . . . 9.65 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.85 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.44 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.96 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.97 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.937 0.756 0.785 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 43.858 0.784 0.808 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.984 0.758 0.787 26 100.0 26 ERRCA BURIED . . . . . . . . 42.689 0.745 0.774 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.912 0.755 0.785 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 43.788 0.782 0.806 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.897 0.756 0.785 129 100.0 129 ERRMC BURIED . . . . . . . . 42.994 0.755 0.782 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 40.698 0.692 0.737 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 40.906 0.698 0.741 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 42.171 0.733 0.766 41 100.0 41 ERRSC SURFACE . . . . . . . . 40.696 0.692 0.737 120 100.0 120 ERRSC BURIED . . . . . . . . 40.733 0.691 0.734 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.826 0.725 0.761 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 43.034 0.759 0.787 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.759 0.723 0.760 224 100.0 224 ERRALL BURIED . . . . . . . . 42.326 0.736 0.768 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 5 28 31 31 DISTCA CA (P) 0.00 3.23 9.68 16.13 90.32 31 DISTCA CA (RMS) 0.00 1.79 2.26 3.04 6.83 DISTCA ALL (N) 0 6 12 34 190 254 254 DISTALL ALL (P) 0.00 2.36 4.72 13.39 74.80 254 DISTALL ALL (RMS) 0.00 1.67 2.13 3.64 6.88 DISTALL END of the results output