####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS182_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS182_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 351 - 366 4.77 13.90 LCS_AVERAGE: 46.20 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 352 - 360 1.98 12.98 LCS_AVERAGE: 21.85 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 352 - 359 0.81 14.35 LCS_AVERAGE: 15.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 16 3 3 3 5 7 8 9 11 12 13 14 14 16 16 18 20 22 24 25 25 LCS_GDT A 352 A 352 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 16 16 18 22 24 25 25 LCS_GDT E 353 E 353 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 16 17 20 22 24 25 25 LCS_GDT E 354 E 354 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT L 355 L 355 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT G 356 G 356 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT N 357 N 357 8 9 16 4 7 8 8 8 8 9 11 11 12 14 14 16 16 16 18 22 24 25 25 LCS_GDT I 358 I 358 8 9 16 4 7 8 8 8 8 9 11 11 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT I 359 I 359 8 9 16 4 7 8 8 8 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT V 360 V 360 3 9 16 3 3 4 6 7 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT A 361 A 361 3 4 16 3 3 4 6 6 7 8 10 12 13 14 14 16 18 19 20 22 24 25 25 LCS_GDT W 362 W 362 4 5 16 3 4 4 4 7 8 9 11 12 13 14 14 16 16 19 20 22 24 25 25 LCS_GDT N 363 N 363 4 5 16 0 4 4 4 5 7 8 10 11 12 13 14 16 18 19 20 22 24 25 25 LCS_GDT P 364 P 364 4 6 16 1 4 4 4 6 7 8 10 10 10 12 13 16 18 19 20 22 24 25 25 LCS_GDT N 365 N 365 4 6 16 0 4 4 4 6 7 8 10 10 11 12 13 16 18 19 20 22 24 25 25 LCS_GDT L 366 L 366 4 7 16 1 3 4 6 6 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT W 367 W 367 4 7 13 0 3 4 5 6 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT K 368 K 368 4 7 13 3 4 5 6 6 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT K 369 K 369 4 7 13 3 4 5 6 6 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT G 370 G 370 4 7 13 3 4 5 6 6 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT T 371 T 371 4 7 13 3 4 5 6 6 7 8 10 10 10 11 12 15 18 19 20 22 24 25 25 LCS_GDT N 372 N 372 3 7 13 3 3 5 6 6 7 8 10 10 10 11 12 15 18 19 20 22 24 25 25 LCS_GDT G 373 G 373 4 5 13 3 4 4 5 5 7 8 10 10 10 11 13 16 18 19 20 22 24 25 25 LCS_GDT Y 374 Y 374 4 6 13 3 4 4 5 6 7 8 9 10 12 12 13 16 18 19 20 22 24 25 25 LCS_GDT P 375 P 375 4 6 12 3 4 4 6 7 8 9 10 12 13 14 14 16 16 16 19 22 24 25 25 LCS_GDT I 376 I 376 4 6 12 3 4 4 6 6 7 8 9 12 13 14 14 16 16 16 17 17 18 19 24 LCS_GDT F 377 F 377 3 6 12 3 3 4 6 6 7 8 9 9 10 12 13 14 14 15 16 16 18 19 21 LCS_GDT Q 378 Q 378 4 6 12 3 3 4 5 6 6 8 9 9 10 11 11 11 12 14 16 16 18 19 19 LCS_GDT W 379 W 379 4 6 12 3 3 4 6 6 7 8 9 9 10 11 11 11 12 14 16 16 18 19 20 LCS_GDT S 380 S 380 4 5 12 3 3 4 4 5 5 8 9 9 10 11 11 11 12 14 16 16 18 19 20 LCS_GDT E 381 E 381 4 5 12 3 3 4 4 5 5 5 7 7 7 8 11 11 12 13 16 16 18 19 20 LCS_AVERAGE LCS_A: 27.92 ( 15.71 21.85 46.20 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 8 8 8 9 11 12 13 14 14 16 18 19 20 22 24 25 25 GDT PERCENT_AT 12.90 22.58 25.81 25.81 25.81 25.81 29.03 35.48 38.71 41.94 45.16 45.16 51.61 58.06 61.29 64.52 70.97 77.42 80.65 80.65 GDT RMS_LOCAL 0.21 0.66 0.81 0.81 0.81 0.81 2.09 2.67 3.10 3.35 3.57 3.57 4.27 5.50 5.66 5.87 6.22 6.53 6.70 6.70 GDT RMS_ALL_AT 13.48 14.33 14.35 14.35 14.35 14.35 12.33 12.41 12.75 12.98 13.08 13.08 12.36 12.23 12.07 11.88 11.88 11.63 11.43 11.43 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.819 0 0.604 0.866 5.955 53.929 45.714 LGA A 352 A 352 3.503 0 0.417 0.398 5.830 52.976 46.667 LGA E 353 E 353 1.639 0 0.057 1.358 5.328 81.667 65.608 LGA E 354 E 354 0.865 0 0.068 0.728 3.484 90.595 80.159 LGA L 355 L 355 0.520 0 0.078 1.173 3.702 95.238 78.869 LGA G 356 G 356 0.893 0 0.038 0.038 1.670 83.810 83.810 LGA N 357 N 357 2.626 0 0.236 1.323 3.571 57.619 57.440 LGA I 358 I 358 3.097 0 0.553 1.733 5.438 55.357 49.762 LGA I 359 I 359 3.191 0 0.528 1.839 8.616 57.500 38.929 LGA V 360 V 360 2.957 0 0.610 1.297 7.777 53.333 38.299 LGA A 361 A 361 6.149 0 0.379 0.358 8.381 24.405 20.476 LGA W 362 W 362 3.418 0 0.661 1.478 5.424 37.738 44.184 LGA N 363 N 363 8.711 0 0.186 1.139 11.322 4.048 5.357 LGA P 364 P 364 16.017 0 0.692 0.864 17.965 0.000 0.000 LGA N 365 N 365 18.318 0 0.643 1.305 18.621 0.000 0.000 LGA L 366 L 366 16.766 0 0.123 0.458 17.399 0.000 0.000 LGA W 367 W 367 14.958 0 0.641 1.415 15.607 0.000 4.592 LGA K 368 K 368 18.089 0 0.211 0.732 25.075 0.000 0.000 LGA K 369 K 369 17.398 0 0.236 0.692 23.543 0.000 0.000 LGA G 370 G 370 18.613 0 0.312 0.312 19.284 0.000 0.000 LGA T 371 T 371 18.718 0 0.582 0.630 19.995 0.000 0.000 LGA N 372 N 372 19.247 0 0.140 0.222 23.024 0.000 0.000 LGA G 373 G 373 14.360 0 0.686 0.686 15.596 0.000 0.000 LGA Y 374 Y 374 13.504 0 0.237 0.577 23.348 0.000 0.000 LGA P 375 P 375 10.250 0 0.496 0.583 12.508 0.000 0.000 LGA I 376 I 376 10.650 0 0.347 0.815 13.215 2.143 1.071 LGA F 377 F 377 9.491 0 0.587 1.471 10.929 0.357 0.130 LGA Q 378 Q 378 13.279 0 0.044 1.545 16.483 0.000 0.000 LGA W 379 W 379 15.735 0 0.452 0.990 20.409 0.000 0.000 LGA S 380 S 380 17.161 0 0.030 0.795 17.741 0.000 0.000 LGA E 381 E 381 19.369 1 0.522 1.661 23.778 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.947 9.811 10.838 24.217 21.325 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.67 37.097 32.416 0.397 LGA_LOCAL RMSD: 2.671 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.414 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.947 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.809129 * X + 0.563613 * Y + -0.166286 * Z + 29.299902 Y_new = -0.350473 * X + -0.689992 * Y + -0.633309 * Z + 19.358507 Z_new = -0.471677 * X + -0.454150 * Y + 0.755823 * Z + 24.560566 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.732840 0.491192 -0.541057 [DEG: -156.5802 28.1432 -31.0003 ] ZXZ: -0.256771 0.713886 -2.337265 [DEG: -14.7119 40.9026 -133.9154 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS182_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS182_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.67 32.416 9.95 REMARK ---------------------------------------------------------- MOLECULE T0537TS182_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 2529 N SER 351 6.106 17.053 49.576 1.00 5.05 N ATOM 2530 CA SER 351 5.500 16.900 50.887 1.00 5.05 C ATOM 2531 C SER 351 5.686 15.458 51.365 1.00 5.05 C ATOM 2532 O SER 351 5.980 15.223 52.536 1.00 5.05 O ATOM 2533 CB SER 351 4.013 17.260 50.853 1.00 5.14 C ATOM 2534 OG SER 351 3.670 18.209 51.860 1.00 5.14 O ATOM 2535 N ALA 352 5.506 14.533 50.433 1.00 5.09 N ATOM 2536 CA ALA 352 5.651 13.121 50.744 1.00 5.09 C ATOM 2537 C ALA 352 6.094 12.968 52.200 1.00 5.09 C ATOM 2538 O ALA 352 6.993 12.183 52.497 1.00 5.09 O ATOM 2539 CB ALA 352 6.636 12.480 49.764 1.00 5.06 C ATOM 2540 N GLU 353 5.444 13.730 53.066 1.00 5.46 N ATOM 2541 CA GLU 353 5.760 13.690 54.485 1.00 5.46 C ATOM 2542 C GLU 353 7.085 12.974 54.751 1.00 5.46 C ATOM 2543 O GLU 353 7.995 13.550 55.346 1.00 5.46 O ATOM 2544 CB GLU 353 4.622 13.050 55.282 1.00 5.54 C ATOM 2545 CG GLU 353 3.883 14.096 56.120 1.00 5.54 C ATOM 2546 CD GLU 353 4.478 15.490 55.904 1.00 5.54 C ATOM 2547 OE1 GLU 353 5.420 15.647 55.113 1.00 5.54 O ATOM 2548 OE2 GLU 353 3.927 16.430 56.594 1.00 5.54 O ATOM 2549 N GLU 354 7.151 11.730 54.298 1.00 5.32 N ATOM 2550 CA GLU 354 8.351 10.931 54.480 1.00 5.32 C ATOM 2551 C GLU 354 9.589 11.583 53.864 1.00 5.32 C ATOM 2552 O GLU 354 10.704 11.382 54.346 1.00 5.32 O ATOM 2553 CB GLU 354 8.151 9.513 53.940 1.00 5.27 C ATOM 2554 CG GLU 354 6.758 9.351 53.327 1.00 5.27 C ATOM 2555 CD GLU 354 6.562 7.936 52.780 1.00 5.27 C ATOM 2556 OE1 GLU 354 5.494 7.627 52.229 1.00 5.27 O ATOM 2557 OE2 GLU 354 7.567 7.143 52.942 1.00 5.27 O ATOM 2558 N LEU 355 9.353 12.349 52.809 1.00 4.83 N ATOM 2559 CA LEU 355 10.436 13.033 52.121 1.00 4.83 C ATOM 2560 C LEU 355 11.156 14.010 53.051 1.00 4.83 C ATOM 2561 O LEU 355 12.373 13.937 53.210 1.00 4.83 O ATOM 2562 CB LEU 355 9.929 13.673 50.828 1.00 4.71 C ATOM 2563 CG LEU 355 9.076 12.779 49.925 1.00 4.71 C ATOM 2564 CD1 LEU 355 9.883 11.583 49.418 1.00 4.71 C ATOM 2565 CD2 LEU 355 7.794 12.346 50.637 1.00 4.71 C ATOM 2566 N GLY 356 10.373 14.902 53.640 1.00 5.01 N ATOM 2567 CA GLY 356 10.921 15.893 54.551 1.00 5.01 C ATOM 2568 C GLY 356 11.083 15.308 55.955 1.00 5.01 C ATOM 2569 O GLY 356 12.052 15.614 56.648 1.00 5.01 O ATOM 2570 N ASN 357 10.122 14.477 56.331 1.00 5.46 N ATOM 2571 CA ASN 357 10.147 13.846 57.639 1.00 5.46 C ATOM 2572 C ASN 357 11.446 13.056 57.810 1.00 5.46 C ATOM 2573 O ASN 357 11.662 12.431 58.847 1.00 5.46 O ATOM 2574 CB ASN 357 8.978 12.874 57.804 1.00 5.73 C ATOM 2575 CG ASN 357 8.497 12.836 59.256 1.00 5.73 C ATOM 2576 OD1 ASN 357 7.568 12.129 59.611 1.00 5.73 O ATOM 2577 ND2 ASN 357 9.180 13.631 60.073 1.00 5.73 N ATOM 2578 N ILE 358 12.275 13.111 56.778 1.00 5.17 N ATOM 2579 CA ILE 358 13.547 12.408 56.801 1.00 5.17 C ATOM 2580 C ILE 358 14.622 13.261 56.124 1.00 5.17 C ATOM 2581 O ILE 358 14.940 13.050 54.955 1.00 5.17 O ATOM 2582 CB ILE 358 13.398 11.012 56.195 1.00 5.05 C ATOM 2583 CG1 ILE 358 13.562 11.054 54.674 1.00 5.05 C ATOM 2584 CG2 ILE 358 12.072 10.372 56.610 1.00 5.05 C ATOM 2585 CD1 ILE 358 12.556 12.017 54.040 1.00 5.05 C ATOM 2586 N ILE 359 15.150 14.207 56.889 1.00 4.90 N ATOM 2587 CA ILE 359 16.183 15.092 56.378 1.00 4.90 C ATOM 2588 C ILE 359 17.510 14.331 56.405 1.00 4.90 C ATOM 2589 O ILE 359 18.409 14.676 57.171 1.00 4.90 O ATOM 2590 CB ILE 359 16.207 16.400 57.171 1.00 5.05 C ATOM 2591 CG1 ILE 359 16.619 16.153 58.624 1.00 5.05 C ATOM 2592 CG2 ILE 359 14.864 17.126 57.073 1.00 5.05 C ATOM 2593 CD1 ILE 359 18.048 15.612 58.704 1.00 5.05 C ATOM 2594 N VAL 360 17.589 13.314 55.560 1.00 4.71 N ATOM 2595 CA VAL 360 18.792 12.501 55.478 1.00 4.71 C ATOM 2596 C VAL 360 19.538 12.913 54.207 1.00 4.71 C ATOM 2597 O VAL 360 19.061 12.672 53.099 1.00 4.71 O ATOM 2598 CB VAL 360 18.423 11.017 55.500 1.00 4.56 C ATOM 2599 CG1 VAL 360 16.905 10.829 55.496 1.00 4.56 C ATOM 2600 CG2 VAL 360 19.070 10.274 54.329 1.00 4.56 C ATOM 2601 N ALA 361 20.695 13.526 54.411 1.00 4.25 N ATOM 2602 CA ALA 361 21.513 13.974 53.296 1.00 4.25 C ATOM 2603 C ALA 361 22.619 12.993 52.902 1.00 4.25 C ATOM 2604 O ALA 361 23.793 13.357 52.879 1.00 4.25 O ATOM 2605 CB ALA 361 22.052 15.376 53.589 1.00 4.25 C ATOM 2606 N TRP 362 22.202 11.772 52.600 1.00 4.17 N ATOM 2607 CA TRP 362 23.143 10.736 52.208 1.00 4.17 C ATOM 2608 C TRP 362 23.399 11.032 50.729 1.00 4.17 C ATOM 2609 O TRP 362 22.457 11.235 49.963 1.00 4.17 O ATOM 2610 CB TRP 362 22.557 9.344 52.446 1.00 4.02 C ATOM 2611 CG TRP 362 21.625 8.862 51.333 1.00 4.02 C ATOM 2612 CD1 TRP 362 21.742 7.761 50.577 1.00 4.02 C ATOM 2613 CD2 TRP 362 20.420 9.514 50.877 1.00 4.02 C ATOM 2614 NE1 TRP 362 20.705 7.657 49.671 1.00 4.02 N ATOM 2615 CE2 TRP 362 19.876 8.757 49.860 1.00 4.02 C ATOM 2616 CE3 TRP 362 19.810 10.705 51.311 1.00 4.02 C ATOM 2617 CZ2 TRP 362 18.697 9.105 49.191 1.00 4.02 C ATOM 2618 CZ3 TRP 362 18.632 11.039 50.632 1.00 4.02 C ATOM 2619 CH2 TRP 362 18.072 10.288 49.607 1.00 4.02 H ATOM 2620 N ASN 363 24.675 11.048 50.373 1.00 3.66 N ATOM 2621 CA ASN 363 25.065 11.316 48.999 1.00 3.66 C ATOM 2622 C ASN 363 26.362 10.951 48.272 1.00 3.66 C ATOM 2623 O ASN 363 27.446 11.045 48.846 1.00 3.66 O ATOM 2624 CB ASN 363 24.672 12.734 48.580 1.00 3.76 C ATOM 2625 CG ASN 363 24.765 13.700 49.763 1.00 3.76 C ATOM 2626 OD1 ASN 363 24.497 14.884 49.652 1.00 3.76 O ATOM 2627 ND2 ASN 363 25.160 13.130 50.898 1.00 3.76 N ATOM 2628 N PRO 364 26.239 10.535 47.009 1.00 3.32 N ATOM 2629 CA PRO 364 27.398 10.160 46.217 1.00 3.32 C ATOM 2630 C PRO 364 27.946 11.352 45.429 1.00 3.32 C ATOM 2631 O PRO 364 27.215 12.301 45.147 1.00 3.32 O ATOM 2632 CB PRO 364 26.802 9.526 44.957 1.00 3.32 C ATOM 2633 CG PRO 364 25.461 10.193 44.830 1.00 3.32 C ATOM 2634 CD PRO 364 24.983 10.390 46.239 1.00 3.32 C ATOM 2635 N ASN 365 29.226 11.264 45.097 1.00 2.96 N ATOM 2636 CA ASN 365 29.880 12.323 44.348 1.00 2.96 C ATOM 2637 C ASN 365 31.047 12.927 45.132 1.00 2.96 C ATOM 2638 O ASN 365 30.873 13.363 46.269 1.00 2.96 O ATOM 2639 CB ASN 365 28.899 13.450 44.017 1.00 2.96 C ATOM 2640 CG ASN 365 28.395 14.129 45.291 1.00 2.96 C ATOM 2641 OD1 ASN 365 27.512 14.971 45.269 1.00 2.96 O ATOM 2642 ND2 ASN 365 29.002 13.718 46.401 1.00 2.96 N ATOM 2643 N LEU 366 32.208 12.932 44.493 1.00 3.06 N ATOM 2644 CA LEU 366 33.403 13.475 45.116 1.00 3.06 C ATOM 2645 C LEU 366 32.959 14.350 46.290 1.00 3.06 C ATOM 2646 O LEU 366 33.717 14.553 47.236 1.00 3.06 O ATOM 2647 CB LEU 366 34.255 14.216 44.084 1.00 2.92 C ATOM 2648 CG LEU 366 35.202 15.282 44.638 1.00 2.92 C ATOM 2649 CD1 LEU 366 36.662 14.921 44.351 1.00 2.92 C ATOM 2650 CD2 LEU 366 34.839 16.669 44.105 1.00 2.92 C ATOM 2651 N TRP 367 31.733 14.843 46.188 1.00 3.24 N ATOM 2652 CA TRP 367 31.179 15.690 47.229 1.00 3.24 C ATOM 2653 C TRP 367 30.848 14.814 48.438 1.00 3.24 C ATOM 2654 O TRP 367 30.387 15.315 49.463 1.00 3.24 O ATOM 2655 CB TRP 367 29.971 16.476 46.712 1.00 3.27 C ATOM 2656 CG TRP 367 29.036 16.975 47.814 1.00 3.27 C ATOM 2657 CD1 TRP 367 29.129 16.765 49.134 1.00 3.27 C ATOM 2658 CD2 TRP 367 27.851 17.782 47.637 1.00 3.27 C ATOM 2659 NE1 TRP 367 28.097 17.375 49.818 1.00 3.27 N ATOM 2660 CE2 TRP 367 27.296 18.013 48.878 1.00 3.27 C ATOM 2661 CE3 TRP 367 27.270 18.300 46.466 1.00 3.27 C ATOM 2662 CZ2 TRP 367 26.131 18.767 49.069 1.00 3.27 C ATOM 2663 CZ3 TRP 367 26.107 19.049 46.673 1.00 3.27 C ATOM 2664 CH2 TRP 367 25.534 19.292 47.916 1.00 3.27 H ATOM 2665 N LYS 368 31.096 13.522 48.278 1.00 3.62 N ATOM 2666 CA LYS 368 30.831 12.571 49.344 1.00 3.62 C ATOM 2667 C LYS 368 30.500 13.358 50.613 1.00 3.62 C ATOM 2668 O LYS 368 31.380 13.975 51.211 1.00 3.62 O ATOM 2669 CB LYS 368 32.008 11.607 49.507 1.00 3.78 C ATOM 2670 CG LYS 368 32.643 11.748 50.892 1.00 3.78 C ATOM 2671 CD LYS 368 34.121 11.354 50.859 1.00 3.78 C ATOM 2672 CE LYS 368 34.957 12.418 50.145 1.00 3.78 C ATOM 2673 NZ LYS 368 36.401 12.131 50.297 1.00 3.78 N ATOM 2674 N LYS 369 29.229 13.311 50.985 1.00 3.95 N ATOM 2675 CA LYS 369 28.770 14.012 52.173 1.00 3.95 C ATOM 2676 C LYS 369 27.601 13.286 52.842 1.00 3.95 C ATOM 2677 O LYS 369 26.447 13.492 52.471 1.00 3.95 O ATOM 2678 CB LYS 369 28.481 15.480 51.851 1.00 3.91 C ATOM 2679 CG LYS 369 29.306 16.410 52.741 1.00 3.91 C ATOM 2680 CD LYS 369 30.458 17.042 51.955 1.00 3.91 C ATOM 2681 CE LYS 369 31.620 17.402 52.881 1.00 3.91 C ATOM 2682 NZ LYS 369 32.611 18.239 52.167 1.00 3.91 N ATOM 2683 N GLY 370 27.942 12.456 53.816 1.00 4.36 N ATOM 2684 CA GLY 370 26.935 11.699 54.541 1.00 4.36 C ATOM 2685 C GLY 370 26.401 12.630 55.631 1.00 4.36 C ATOM 2686 O GLY 370 26.872 12.593 56.767 1.00 4.36 O ATOM 2687 N THR 371 25.426 13.442 55.246 1.00 4.54 N ATOM 2688 CA THR 371 24.824 14.381 56.177 1.00 4.54 C ATOM 2689 C THR 371 23.468 13.835 56.627 1.00 4.54 C ATOM 2690 O THR 371 22.459 14.042 55.953 1.00 4.54 O ATOM 2691 CB THR 371 24.731 15.742 55.483 1.00 4.41 C ATOM 2692 OG1 THR 371 25.545 15.596 54.322 1.00 4.41 O ATOM 2693 CG2 THR 371 25.415 16.854 56.280 1.00 4.41 C ATOM 2694 N ASN 372 23.488 13.150 57.761 1.00 4.95 N ATOM 2695 CA ASN 372 22.273 12.572 58.309 1.00 4.95 C ATOM 2696 C ASN 372 21.600 13.505 59.318 1.00 4.95 C ATOM 2697 O ASN 372 21.081 13.050 60.337 1.00 4.95 O ATOM 2698 CB ASN 372 22.562 11.244 59.012 1.00 5.14 C ATOM 2699 CG ASN 372 23.384 11.465 60.283 1.00 5.14 C ATOM 2700 OD1 ASN 372 23.736 12.578 60.641 1.00 5.14 O ATOM 2701 ND2 ASN 372 23.670 10.347 60.943 1.00 5.14 N ATOM 2702 N GLY 373 21.631 14.791 59.000 1.00 5.13 N ATOM 2703 CA GLY 373 21.030 15.791 59.866 1.00 5.13 C ATOM 2704 C GLY 373 20.186 14.938 60.815 1.00 5.13 C ATOM 2705 O GLY 373 20.368 13.725 60.890 1.00 5.13 O ATOM 2706 N TYR 374 19.283 15.609 61.516 1.00 5.58 N ATOM 2707 CA TYR 374 18.411 14.929 62.458 1.00 5.58 C ATOM 2708 C TYR 374 17.177 14.460 61.685 1.00 5.58 C ATOM 2709 O TYR 374 17.078 14.677 60.479 1.00 5.58 O ATOM 2710 CB TYR 374 17.987 15.986 63.480 1.00 5.77 C ATOM 2711 CG TYR 374 19.157 16.719 64.138 1.00 5.77 C ATOM 2712 CD1 TYR 374 18.938 17.906 64.808 1.00 5.77 C ATOM 2713 CD2 TYR 374 20.431 16.194 64.062 1.00 5.77 C ATOM 2714 CE1 TYR 374 20.040 18.596 65.428 1.00 5.77 C ATOM 2715 CE2 TYR 374 21.533 16.885 64.682 1.00 5.77 C ATOM 2716 CZ TYR 374 21.283 18.052 65.334 1.00 5.77 C ATOM 2717 OH TYR 374 22.322 18.704 65.920 1.00 5.77 H ATOM 2718 N PRO 375 16.241 13.817 62.390 1.00 5.67 N ATOM 2719 CA PRO 375 15.025 13.324 61.766 1.00 5.67 C ATOM 2720 C PRO 375 14.185 14.291 60.928 1.00 5.67 C ATOM 2721 O PRO 375 14.182 14.209 59.701 1.00 5.67 O ATOM 2722 CB PRO 375 14.373 12.460 62.849 1.00 5.79 C ATOM 2723 CG PRO 375 14.869 13.068 64.130 1.00 5.79 C ATOM 2724 CD PRO 375 16.274 13.511 63.838 1.00 5.79 C ATOM 2725 N ILE 376 13.495 15.182 61.626 1.00 5.65 N ATOM 2726 CA ILE 376 12.654 16.163 60.962 1.00 5.65 C ATOM 2727 C ILE 376 13.155 17.312 60.085 1.00 5.65 C ATOM 2728 O ILE 376 13.778 18.249 60.583 1.00 5.65 O ATOM 2729 CB ILE 376 11.467 16.540 61.850 1.00 5.91 C ATOM 2730 CG1 ILE 376 11.705 16.103 63.298 1.00 5.91 C ATOM 2731 CG2 ILE 376 10.161 15.976 61.289 1.00 5.91 C ATOM 2732 CD1 ILE 376 12.478 17.172 64.073 1.00 5.91 C ATOM 2733 N PHE 377 12.864 17.202 58.797 1.00 5.20 N ATOM 2734 CA PHE 377 13.278 18.219 57.846 1.00 5.20 C ATOM 2735 C PHE 377 11.886 18.855 57.844 1.00 5.20 C ATOM 2736 O PHE 377 11.633 19.798 57.097 1.00 5.20 O ATOM 2737 CB PHE 377 13.505 17.515 56.508 1.00 4.86 C ATOM 2738 CG PHE 377 13.597 18.466 55.312 1.00 4.86 C ATOM 2739 CD1 PHE 377 14.576 19.407 55.264 1.00 4.86 C ATOM 2740 CD2 PHE 377 12.697 18.368 54.297 1.00 4.86 C ATOM 2741 CE1 PHE 377 14.661 20.289 54.155 1.00 4.86 C ATOM 2742 CE2 PHE 377 12.780 19.251 53.187 1.00 4.86 C ATOM 2743 CZ PHE 377 13.760 20.193 53.139 1.00 4.86 C ATOM 2744 N GLN 378 11.021 18.311 58.689 1.00 5.55 N ATOM 2745 CA GLN 378 9.662 18.813 58.794 1.00 5.55 C ATOM 2746 C GLN 378 9.259 19.442 57.459 1.00 5.55 C ATOM 2747 O GLN 378 8.109 19.329 57.040 1.00 5.55 O ATOM 2748 CB GLN 378 9.537 19.822 59.937 1.00 5.80 C ATOM 2749 CG GLN 378 8.121 19.822 60.517 1.00 5.80 C ATOM 2750 CD GLN 378 7.099 19.368 59.472 1.00 5.80 C ATOM 2751 OE1 GLN 378 7.428 19.067 58.336 1.00 5.80 O ATOM 2752 NE2 GLN 378 5.847 19.338 59.917 1.00 5.80 N ATOM 2753 N TRP 379 10.229 20.091 56.831 1.00 5.13 N ATOM 2754 CA TRP 379 9.990 20.739 55.553 1.00 5.13 C ATOM 2755 C TRP 379 8.574 20.432 55.062 1.00 5.13 C ATOM 2756 O TRP 379 8.354 19.432 54.379 1.00 5.13 O ATOM 2757 CB TRP 379 11.070 20.363 54.537 1.00 4.75 C ATOM 2758 CG TRP 379 10.800 20.876 53.122 1.00 4.75 C ATOM 2759 CD1 TRP 379 11.501 21.781 52.425 1.00 4.75 C ATOM 2760 CD2 TRP 379 9.719 20.476 52.253 1.00 4.75 C ATOM 2761 NE1 TRP 379 10.953 21.993 51.176 1.00 4.75 N ATOM 2762 CE2 TRP 379 9.834 21.174 51.068 1.00 4.75 C ATOM 2763 CE3 TRP 379 8.677 19.554 52.462 1.00 4.75 C ATOM 2764 CZ2 TRP 379 8.942 21.024 50.000 1.00 4.75 C ATOM 2765 CZ3 TRP 379 7.794 19.416 51.385 1.00 4.75 C ATOM 2766 CH2 TRP 379 7.897 20.112 50.185 1.00 4.75 H ATOM 2767 N SER 380 7.651 21.310 55.427 1.00 5.39 N ATOM 2768 CA SER 380 6.262 21.145 55.033 1.00 5.39 C ATOM 2769 C SER 380 5.921 22.057 53.852 1.00 5.39 C ATOM 2770 O SER 380 6.306 23.225 53.835 1.00 5.39 O ATOM 2771 CB SER 380 5.320 21.420 56.206 1.00 5.46 C ATOM 2772 OG SER 380 4.113 22.049 55.785 1.00 5.46 O ATOM 2773 N GLU 381 5.202 21.487 52.895 1.00 5.17 N ATOM 2774 CA GLU 381 4.805 22.234 51.713 1.00 5.17 C ATOM 2775 C GLU 381 3.407 22.822 51.914 1.00 5.17 C ATOM 2776 O GLU 381 3.248 24.039 51.989 1.00 5.17 O ATOM 2777 CB GLU 381 4.853 21.350 50.465 1.00 5.26 C ATOM 2778 CG GLU 381 3.560 21.472 49.657 1.00 5.26 C ATOM 2779 CD GLU 381 2.643 22.544 50.247 1.00 5.26 C ATOM 2780 OE1 GLU 381 3.003 23.189 51.244 1.00 5.26 O ATOM 2781 OE2 GLU 381 1.519 22.700 49.633 1.00 5.26 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.21 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 73.59 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 85.09 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 79.65 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 103.10 11.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 99.76 12.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 115.60 0.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.62 13.0 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 126.66 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 115.85 9.1 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 112.07 6.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 130.33 14.3 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 118.33 10.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 87.23 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.06 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 55.94 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 9.56 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 53.06 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 9.76 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 9.76 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 9.76 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.95 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.95 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3209 CRMSCA SECONDARY STRUCTURE . . 7.28 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.29 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.95 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.99 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.28 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.32 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.88 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.84 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.88 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.68 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.11 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.82 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.90 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.90 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.24 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.91 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.739 0.308 0.155 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 2.355 0.186 0.095 11 100.0 11 ERRCA SURFACE . . . . . . . . 5.135 0.331 0.166 26 100.0 26 ERRCA BURIED . . . . . . . . 2.684 0.187 0.094 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.752 0.307 0.154 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 2.361 0.185 0.095 54 100.0 54 ERRMC SURFACE . . . . . . . . 5.118 0.327 0.164 129 100.0 129 ERRMC BURIED . . . . . . . . 2.702 0.194 0.099 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.437 0.376 0.197 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 6.500 0.377 0.191 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 3.625 0.257 0.143 41 100.0 41 ERRSC SURFACE . . . . . . . . 6.733 0.389 0.202 119 99.2 120 ERRSC BURIED . . . . . . . . 2.906 0.226 0.143 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.534 0.339 0.174 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 2.876 0.214 0.115 85 100.0 85 ERRALL SURFACE . . . . . . . . 5.903 0.357 0.183 223 99.6 224 ERRALL BURIED . . . . . . . . 2.789 0.203 0.112 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 19 31 31 DISTCA CA (P) 0.00 0.00 0.00 9.68 61.29 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.25 7.35 DISTCA ALL (N) 1 1 5 31 141 253 254 DISTALL ALL (P) 0.39 0.39 1.97 12.20 55.51 254 DISTALL ALL (RMS) 0.62 0.62 2.02 4.00 7.31 DISTALL END of the results output