####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS174_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS174_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 351 - 369 4.99 10.46 LCS_AVERAGE: 56.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 371 - 377 2.00 24.24 LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.53 21.84 LCS_AVERAGE: 17.59 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 352 - 355 0.85 25.86 LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.75 24.16 LONGEST_CONTINUOUS_SEGMENT: 4 368 - 371 0.80 16.53 LONGEST_CONTINUOUS_SEGMENT: 4 369 - 372 0.63 16.46 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.81 22.89 LCS_AVERAGE: 11.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 19 0 3 3 3 5 5 5 6 9 10 10 12 13 15 16 18 20 21 22 23 LCS_GDT A 352 A 352 4 4 19 3 4 4 4 4 5 8 9 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT E 353 E 353 4 5 19 3 4 5 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT E 354 E 354 4 5 19 3 4 4 4 4 9 9 11 12 13 16 17 17 17 18 19 20 22 22 23 LCS_GDT L 355 L 355 4 5 19 3 4 4 4 5 5 6 8 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT G 356 G 356 3 5 19 3 3 3 4 5 7 8 9 10 12 15 17 17 17 18 19 20 22 22 23 LCS_GDT N 357 N 357 3 5 19 3 3 3 4 7 7 8 9 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT I 358 I 358 3 4 19 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT I 359 I 359 3 4 19 3 3 4 5 6 7 9 9 10 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT V 360 V 360 3 4 19 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT A 361 A 361 3 5 19 3 3 3 5 6 8 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT W 362 W 362 4 5 19 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT N 363 N 363 4 5 19 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT P 364 P 364 4 5 19 3 3 4 4 6 7 9 10 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT N 365 N 365 4 5 19 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT L 366 L 366 3 5 19 3 3 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT W 367 W 367 3 6 19 3 3 5 5 5 7 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT K 368 K 368 4 6 19 3 4 5 5 5 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 LCS_GDT K 369 K 369 4 6 19 3 4 4 5 5 6 8 9 11 12 13 15 16 16 18 19 20 20 22 22 LCS_GDT G 370 G 370 4 6 18 3 4 5 5 6 7 8 9 11 12 13 15 16 16 18 19 20 20 21 22 LCS_GDT T 371 T 371 4 7 17 3 4 5 6 7 8 9 10 11 12 13 15 16 16 18 19 20 20 21 22 LCS_GDT N 372 N 372 4 7 17 3 4 5 6 7 8 9 10 11 12 13 14 15 16 18 18 19 20 20 22 LCS_GDT G 373 G 373 4 7 17 3 4 4 6 7 8 9 10 11 12 13 14 15 15 17 17 18 20 20 21 LCS_GDT Y 374 Y 374 4 7 17 3 4 4 6 7 8 9 10 11 12 12 14 15 16 18 18 19 20 20 22 LCS_GDT P 375 P 375 4 7 16 3 4 4 6 7 8 9 10 11 11 11 12 12 13 13 16 16 20 20 21 LCS_GDT I 376 I 376 4 7 13 3 4 4 6 7 8 9 10 11 11 11 12 12 13 13 13 15 17 18 22 LCS_GDT F 377 F 377 3 7 13 3 3 5 6 7 8 9 10 11 11 11 12 12 13 13 13 14 22 22 23 LCS_GDT Q 378 Q 378 3 7 13 3 3 5 6 7 8 9 10 11 11 11 12 12 13 13 15 17 22 22 23 LCS_GDT W 379 W 379 3 7 13 3 3 5 6 7 8 9 10 11 11 11 12 12 13 13 16 17 22 22 23 LCS_GDT S 380 S 380 3 4 13 3 3 3 4 5 7 9 10 11 12 13 14 17 17 18 19 20 22 22 23 LCS_GDT E 381 E 381 3 4 13 0 3 3 4 6 7 7 8 11 12 13 14 17 17 18 19 20 22 22 23 LCS_AVERAGE LCS_A: 28.44 ( 11.45 17.59 56.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 6 7 9 9 11 12 15 16 17 17 17 18 19 20 22 22 23 GDT PERCENT_AT 9.68 16.13 19.35 19.35 22.58 29.03 29.03 35.48 38.71 48.39 51.61 54.84 54.84 54.84 58.06 61.29 64.52 70.97 70.97 74.19 GDT RMS_LOCAL 0.01 0.69 0.89 0.89 1.33 2.09 2.03 2.65 2.91 3.71 3.85 4.07 4.07 4.07 4.62 4.89 5.40 5.94 5.94 6.22 GDT RMS_ALL_AT 18.33 10.57 11.27 11.27 23.82 10.16 23.86 10.70 10.72 11.11 11.00 10.96 10.96 10.96 10.79 10.96 10.14 11.11 11.11 10.90 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 12.230 0 0.528 1.024 12.809 0.000 0.000 LGA A 352 A 352 8.131 0 0.614 0.565 9.963 14.643 11.810 LGA E 353 E 353 1.795 0 0.152 1.296 8.901 64.405 37.672 LGA E 354 E 354 2.682 0 0.493 1.349 7.217 55.595 39.524 LGA L 355 L 355 6.858 0 0.248 0.276 13.119 14.405 7.381 LGA G 356 G 356 7.857 0 0.152 0.152 8.926 7.619 7.619 LGA N 357 N 357 5.622 0 0.436 0.353 6.198 20.476 19.345 LGA I 358 I 358 3.005 0 0.592 0.855 4.652 40.476 43.929 LGA I 359 I 359 6.860 0 0.483 0.586 14.086 24.405 12.262 LGA V 360 V 360 2.218 0 0.293 1.217 5.974 61.429 54.558 LGA A 361 A 361 4.058 0 0.249 0.275 5.802 50.595 44.762 LGA W 362 W 362 1.607 0 0.729 0.928 11.549 77.262 31.088 LGA N 363 N 363 1.263 0 0.196 0.604 5.034 64.048 53.274 LGA P 364 P 364 5.293 0 0.515 0.596 7.587 33.690 25.034 LGA N 365 N 365 1.199 0 0.279 0.464 5.504 77.143 60.060 LGA L 366 L 366 2.356 0 0.623 1.324 6.280 61.429 51.786 LGA W 367 W 367 3.818 0 0.325 0.432 14.050 46.905 15.204 LGA K 368 K 368 3.286 0 0.691 0.900 6.249 41.786 42.275 LGA K 369 K 369 9.257 0 0.543 1.146 19.436 4.167 1.852 LGA G 370 G 370 10.562 0 0.069 0.069 13.172 0.000 0.000 LGA T 371 T 371 14.165 0 0.345 1.258 17.638 0.000 0.000 LGA N 372 N 372 18.160 0 0.621 1.500 18.481 0.000 0.000 LGA G 373 G 373 19.685 0 0.179 0.179 19.685 0.000 0.000 LGA Y 374 Y 374 14.584 0 0.174 1.203 15.875 0.000 0.000 LGA P 375 P 375 14.003 0 0.639 0.631 18.123 0.000 0.000 LGA I 376 I 376 13.225 0 0.190 0.243 17.591 0.000 0.000 LGA F 377 F 377 14.831 0 0.131 1.412 15.420 0.000 0.000 LGA Q 378 Q 378 17.347 0 0.549 1.341 21.773 0.000 0.000 LGA W 379 W 379 19.631 0 0.188 1.337 22.932 0.000 0.000 LGA S 380 S 380 14.697 0 0.287 0.466 15.728 0.000 0.000 LGA E 381 E 381 14.879 1 0.641 1.027 17.197 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.455 9.369 10.350 24.531 18.046 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.65 33.065 30.472 0.400 LGA_LOCAL RMSD: 2.652 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.703 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.455 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.199838 * X + 0.962534 * Y + 0.183287 * Z + 32.680096 Y_new = -0.109335 * X + 0.163986 * Y + -0.980385 * Z + 66.672997 Z_new = -0.973710 * X + -0.215958 * Y + 0.072468 * Z + 182.920654 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.640964 1.340987 -1.247038 [DEG: -151.3161 76.8329 -71.4500 ] ZXZ: 0.184820 1.498265 -1.789052 [DEG: 10.5894 85.8442 -102.5051 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS174_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS174_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.65 30.472 9.46 REMARK ---------------------------------------------------------- MOLECULE T0537TS174_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 10.089 15.469 61.402 1.00 0.00 N ATOM 2530 CA SER 351 9.412 14.260 61.852 1.00 0.00 C ATOM 2531 CB SER 351 8.098 14.590 62.568 1.00 0.00 C ATOM 2532 C SER 351 9.596 13.223 60.744 1.00 0.00 C ATOM 2533 O SER 351 10.142 12.159 60.958 1.00 0.00 O ATOM 2534 OG SER 351 8.359 15.339 63.746 1.00 0.00 O ATOM 2535 N ALA 352 9.157 13.531 59.548 1.00 0.00 N ATOM 2536 CA ALA 352 9.337 12.596 58.437 1.00 0.00 C ATOM 2537 CB ALA 352 9.013 11.124 58.665 1.00 0.00 C ATOM 2538 C ALA 352 8.247 13.333 57.577 1.00 0.00 C ATOM 2539 O ALA 352 7.025 13.243 57.688 1.00 0.00 O ATOM 2540 N GLU 353 8.809 14.152 56.681 1.00 0.00 N ATOM 2541 CA GLU 353 8.171 14.969 55.708 1.00 0.00 C ATOM 2542 CB GLU 353 9.018 15.380 54.505 1.00 0.00 C ATOM 2543 C GLU 353 6.793 14.435 55.227 1.00 0.00 C ATOM 2544 O GLU 353 5.707 14.848 55.622 1.00 0.00 O ATOM 2545 CG GLU 353 10.211 16.264 54.873 1.00 0.00 C ATOM 2546 CD GLU 353 9.679 17.636 55.260 1.00 0.00 C ATOM 2547 OE1 GLU 353 8.459 17.877 55.053 1.00 0.00 O ATOM 2548 OE2 GLU 353 10.483 18.461 55.769 1.00 0.00 O ATOM 2549 N GLU 354 6.907 13.465 54.337 1.00 0.00 N ATOM 2550 CA GLU 354 5.646 12.908 53.756 1.00 0.00 C ATOM 2551 CB GLU 354 6.721 12.724 52.680 1.00 0.00 C ATOM 2552 C GLU 354 5.811 11.403 53.719 1.00 0.00 C ATOM 2553 O GLU 354 5.862 10.721 52.685 1.00 0.00 O ATOM 2554 CG GLU 354 7.249 14.044 52.113 1.00 0.00 C ATOM 2555 CD GLU 354 8.216 14.637 53.127 1.00 0.00 C ATOM 2556 OE1 GLU 354 9.128 13.896 53.579 1.00 0.00 O ATOM 2557 OE2 GLU 354 8.056 15.842 53.463 1.00 0.00 O ATOM 2558 N LEU 355 5.919 10.886 54.931 1.00 0.00 N ATOM 2559 CA LEU 355 6.021 9.388 55.136 1.00 0.00 C ATOM 2560 CB LEU 355 4.832 8.567 55.655 1.00 0.00 C ATOM 2561 C LEU 355 7.018 8.429 54.428 1.00 0.00 C ATOM 2562 O LEU 355 7.057 7.220 54.620 1.00 0.00 O ATOM 2563 CG LEU 355 4.355 8.997 57.043 1.00 0.00 C ATOM 2564 CD1 LEU 355 3.110 8.269 57.552 1.00 0.00 C ATOM 2565 CD2 LEU 355 5.369 8.793 58.167 1.00 0.00 C ATOM 2566 N GLY 356 7.930 9.068 53.683 1.00 0.00 N ATOM 2567 CA GLY 356 9.092 8.462 53.099 1.00 0.00 C ATOM 2568 C GLY 356 9.979 7.592 54.020 1.00 0.00 C ATOM 2569 O GLY 356 10.778 6.787 53.545 1.00 0.00 O ATOM 2570 N ASN 357 9.867 7.814 55.329 1.00 0.00 N ATOM 2571 CA ASN 357 10.599 7.085 56.303 1.00 0.00 C ATOM 2572 CB ASN 357 9.998 5.660 56.433 1.00 0.00 C ATOM 2573 C ASN 357 12.088 6.861 56.252 1.00 0.00 C ATOM 2574 O ASN 357 12.581 5.769 56.517 1.00 0.00 O ATOM 2575 CG ASN 357 8.591 5.792 56.998 1.00 0.00 C ATOM 2576 OD1 ASN 357 8.288 6.735 57.728 1.00 0.00 O ATOM 2577 ND2 ASN 357 7.655 4.854 56.692 1.00 0.00 N ATOM 2578 N ILE 358 12.796 7.896 55.826 1.00 0.00 N ATOM 2579 CA ILE 358 14.159 8.210 55.592 1.00 0.00 C ATOM 2580 CB ILE 358 14.357 9.168 54.404 1.00 0.00 C ATOM 2581 C ILE 358 14.993 8.508 56.700 1.00 0.00 C ATOM 2582 O ILE 358 14.380 8.936 57.674 1.00 0.00 O ATOM 2583 CG1 ILE 358 15.808 9.225 53.897 1.00 0.00 C ATOM 2584 CG2 ILE 358 13.986 10.626 54.723 1.00 0.00 C ATOM 2585 CD1 ILE 358 15.961 9.961 52.566 1.00 0.00 C ATOM 2586 N ILE 359 16.308 8.362 56.694 1.00 0.00 N ATOM 2587 CA ILE 359 17.183 8.686 57.844 1.00 0.00 C ATOM 2588 CB ILE 359 18.307 7.668 58.139 1.00 0.00 C ATOM 2589 C ILE 359 17.920 10.007 57.460 1.00 0.00 C ATOM 2590 O ILE 359 19.138 10.124 57.441 1.00 0.00 O ATOM 2591 CG1 ILE 359 17.787 6.257 58.463 1.00 0.00 C ATOM 2592 CG2 ILE 359 19.189 8.057 59.337 1.00 0.00 C ATOM 2593 CD1 ILE 359 18.888 5.199 58.519 1.00 0.00 C ATOM 2594 N VAL 360 17.094 11.027 57.252 1.00 0.00 N ATOM 2595 CA VAL 360 17.703 12.363 57.038 1.00 0.00 C ATOM 2596 CB VAL 360 18.613 12.860 58.212 1.00 0.00 C ATOM 2597 C VAL 360 18.406 12.417 55.755 1.00 0.00 C ATOM 2598 O VAL 360 19.273 13.237 55.491 1.00 0.00 O ATOM 2599 CG1 VAL 360 17.857 13.064 59.526 1.00 0.00 C ATOM 2600 CG2 VAL 360 19.751 11.895 58.551 1.00 0.00 C ATOM 2601 N ALA 361 18.057 11.468 54.883 1.00 0.00 N ATOM 2602 CA ALA 361 18.779 11.501 53.497 1.00 0.00 C ATOM 2603 CB ALA 361 18.532 12.795 52.671 1.00 0.00 C ATOM 2604 C ALA 361 20.022 10.637 53.692 1.00 0.00 C ATOM 2605 O ALA 361 20.163 9.641 53.013 1.00 0.00 O ATOM 2606 N TRP 362 20.894 10.957 54.617 1.00 0.00 N ATOM 2607 CA TRP 362 22.064 10.160 54.856 1.00 0.00 C ATOM 2608 CB TRP 362 23.140 10.910 54.070 1.00 0.00 C ATOM 2609 C TRP 362 22.592 11.249 55.759 1.00 0.00 C ATOM 2610 O TRP 362 22.736 12.387 55.329 1.00 0.00 O ATOM 2611 CG TRP 362 24.481 10.217 54.049 1.00 0.00 C ATOM 2612 CD1 TRP 362 24.789 8.919 54.336 1.00 0.00 C ATOM 2613 CD2 TRP 362 25.749 10.799 53.714 1.00 0.00 C ATOM 2614 NE1 TRP 362 26.072 8.634 54.219 1.00 0.00 N ATOM 2615 CE2 TRP 362 26.725 9.774 53.831 1.00 0.00 C ATOM 2616 CE3 TRP 362 26.161 12.091 53.322 1.00 0.00 C ATOM 2617 CZ2 TRP 362 28.103 10.002 53.569 1.00 0.00 C ATOM 2618 CZ3 TRP 362 27.543 12.327 53.058 1.00 0.00 C ATOM 2619 CH2 TRP 362 28.490 11.279 53.186 1.00 0.00 C ATOM 2620 N ASN 363 22.766 10.931 57.036 1.00 0.00 N ATOM 2621 CA ASN 363 23.246 11.857 58.044 1.00 0.00 C ATOM 2622 CB ASN 363 23.152 11.195 59.421 1.00 0.00 C ATOM 2623 C ASN 363 24.465 12.499 58.136 1.00 0.00 C ATOM 2624 O ASN 363 25.090 11.570 58.649 1.00 0.00 O ATOM 2625 CG ASN 363 23.581 12.216 60.465 1.00 0.00 C ATOM 2626 OD1 ASN 363 22.960 13.267 60.614 1.00 0.00 O ATOM 2627 ND2 ASN 363 24.665 11.962 61.243 1.00 0.00 N ATOM 2628 N PRO 364 25.014 13.692 57.961 1.00 0.00 N ATOM 2629 CA PRO 364 26.341 13.989 58.601 1.00 0.00 C ATOM 2630 CB PRO 364 27.019 14.406 57.305 1.00 0.00 C ATOM 2631 C PRO 364 25.895 15.411 58.991 1.00 0.00 C ATOM 2632 O PRO 364 26.239 16.456 58.438 1.00 0.00 O ATOM 2633 CG PRO 364 26.383 13.789 56.058 1.00 0.00 C ATOM 2634 CD PRO 364 24.862 13.655 56.148 1.00 0.00 C ATOM 2635 N ASN 365 25.095 15.385 60.053 1.00 0.00 N ATOM 2636 CA ASN 365 24.688 16.761 60.606 1.00 0.00 C ATOM 2637 CB ASN 365 25.605 17.997 60.488 1.00 0.00 C ATOM 2638 C ASN 365 23.634 17.545 59.852 1.00 0.00 C ATOM 2639 O ASN 365 23.854 18.754 59.889 1.00 0.00 O ATOM 2640 CG ASN 365 26.815 17.772 61.383 1.00 0.00 C ATOM 2641 OD1 ASN 365 26.739 17.060 62.382 1.00 0.00 O ATOM 2642 ND2 ASN 365 27.997 18.368 61.074 1.00 0.00 N ATOM 2643 N LEU 366 22.590 17.035 59.186 1.00 0.00 N ATOM 2644 CA LEU 366 21.909 17.925 58.290 1.00 0.00 C ATOM 2645 CB LEU 366 21.185 16.991 57.290 1.00 0.00 C ATOM 2646 C LEU 366 20.907 18.551 59.169 1.00 0.00 C ATOM 2647 O LEU 366 19.829 17.953 59.048 1.00 0.00 O ATOM 2648 CG LEU 366 22.136 16.108 56.481 1.00 0.00 C ATOM 2649 CD1 LEU 366 21.455 15.145 55.510 1.00 0.00 C ATOM 2650 CD2 LEU 366 23.125 16.865 55.595 1.00 0.00 C ATOM 2651 N TRP 367 21.124 19.496 60.083 1.00 0.00 N ATOM 2652 CA TRP 367 19.855 19.729 60.928 1.00 0.00 C ATOM 2653 CB TRP 367 20.425 20.243 62.252 1.00 0.00 C ATOM 2654 C TRP 367 19.583 21.150 60.561 1.00 0.00 C ATOM 2655 O TRP 367 19.763 22.049 61.380 1.00 0.00 O ATOM 2656 CG TRP 367 21.378 19.284 62.924 1.00 0.00 C ATOM 2657 CD1 TRP 367 22.740 19.327 63.003 1.00 0.00 C ATOM 2658 CD2 TRP 367 21.035 18.089 63.642 1.00 0.00 C ATOM 2659 NE1 TRP 367 23.271 18.322 63.671 1.00 0.00 N ATOM 2660 CE2 TRP 367 22.249 17.512 64.098 1.00 0.00 C ATOM 2661 CE3 TRP 367 19.818 17.446 63.949 1.00 0.00 C ATOM 2662 CZ2 TRP 367 22.285 16.308 64.853 1.00 0.00 C ATOM 2663 CZ3 TRP 367 19.846 16.237 64.706 1.00 0.00 C ATOM 2664 CH2 TRP 367 21.077 15.688 65.144 1.00 0.00 C ATOM 2665 N LYS 368 19.156 21.366 59.323 1.00 0.00 N ATOM 2666 CA LYS 368 18.881 22.689 58.754 1.00 0.00 C ATOM 2667 CB LYS 368 17.741 23.615 59.189 1.00 0.00 C ATOM 2668 C LYS 368 19.974 23.627 58.306 1.00 0.00 C ATOM 2669 O LYS 368 19.775 24.820 58.008 1.00 0.00 O ATOM 2670 CG LYS 368 16.350 23.029 58.936 1.00 0.00 C ATOM 2671 CD LYS 368 15.209 23.977 59.309 1.00 0.00 C ATOM 2672 CE LYS 368 13.818 23.380 59.089 1.00 0.00 C ATOM 2673 NZ LYS 368 12.778 24.383 59.415 1.00 0.00 N ATOM 2674 N LYS 369 21.186 23.096 58.331 1.00 0.00 N ATOM 2675 CA LYS 369 22.408 24.018 58.267 1.00 0.00 C ATOM 2676 CB LYS 369 23.594 23.049 58.279 1.00 0.00 C ATOM 2677 C LYS 369 22.708 25.501 57.984 1.00 0.00 C ATOM 2678 O LYS 369 22.777 26.444 58.783 1.00 0.00 O ATOM 2679 CG LYS 369 24.954 23.750 58.292 1.00 0.00 C ATOM 2680 CD LYS 369 26.139 22.786 58.380 1.00 0.00 C ATOM 2681 CE LYS 369 27.499 23.486 58.386 1.00 0.00 C ATOM 2682 NZ LYS 369 28.585 22.484 58.469 1.00 0.00 N ATOM 2683 N GLY 370 22.855 25.656 56.674 1.00 0.00 N ATOM 2684 CA GLY 370 23.102 27.135 56.208 1.00 0.00 C ATOM 2685 C GLY 370 22.814 27.161 54.623 1.00 0.00 C ATOM 2686 O GLY 370 23.013 26.162 53.936 1.00 0.00 O ATOM 2687 N THR 371 22.576 28.359 54.105 1.00 0.00 N ATOM 2688 CA THR 371 22.540 28.337 52.648 1.00 0.00 C ATOM 2689 CB THR 371 21.315 29.158 52.098 1.00 0.00 C ATOM 2690 C THR 371 23.735 27.997 51.755 1.00 0.00 C ATOM 2691 O THR 371 24.141 26.844 51.696 1.00 0.00 O ATOM 2692 OG1 THR 371 20.104 28.634 52.621 1.00 0.00 O ATOM 2693 CG2 THR 371 21.289 29.067 50.563 1.00 0.00 C ATOM 2694 N ASN 372 24.434 28.971 51.156 1.00 0.00 N ATOM 2695 CA ASN 372 25.537 28.552 50.322 1.00 0.00 C ATOM 2696 CB ASN 372 26.750 28.928 51.154 1.00 0.00 C ATOM 2697 C ASN 372 25.156 27.671 49.072 1.00 0.00 C ATOM 2698 O ASN 372 24.069 27.113 48.935 1.00 0.00 O ATOM 2699 CG ASN 372 26.827 30.447 51.213 1.00 0.00 C ATOM 2700 OD1 ASN 372 26.350 31.140 50.316 1.00 0.00 O ATOM 2701 ND2 ASN 372 27.433 31.046 52.274 1.00 0.00 N ATOM 2702 N GLY 373 26.190 27.470 48.273 1.00 0.00 N ATOM 2703 CA GLY 373 26.220 26.620 47.122 1.00 0.00 C ATOM 2704 C GLY 373 25.350 26.918 45.890 1.00 0.00 C ATOM 2705 O GLY 373 25.741 27.118 44.749 1.00 0.00 O ATOM 2706 N TYR 374 24.062 26.823 46.202 1.00 0.00 N ATOM 2707 CA TYR 374 23.116 27.043 44.971 1.00 0.00 C ATOM 2708 CB TYR 374 22.203 25.796 44.906 1.00 0.00 C ATOM 2709 C TYR 374 22.176 27.840 45.771 1.00 0.00 C ATOM 2710 O TYR 374 21.685 27.379 46.791 1.00 0.00 O ATOM 2711 CG TYR 374 21.271 25.983 43.759 1.00 0.00 C ATOM 2712 CD1 TYR 374 21.739 25.827 42.448 1.00 0.00 C ATOM 2713 CD2 TYR 374 19.911 26.311 43.956 1.00 0.00 C ATOM 2714 CE1 TYR 374 20.889 25.992 41.337 1.00 0.00 C ATOM 2715 CE2 TYR 374 19.032 26.483 42.837 1.00 0.00 C ATOM 2716 CZ TYR 374 19.543 26.319 41.534 1.00 0.00 C ATOM 2717 OH TYR 374 18.736 26.478 40.428 1.00 0.00 O ATOM 2718 N PRO 375 21.948 29.076 45.349 1.00 0.00 N ATOM 2719 CA PRO 375 21.090 30.050 46.107 1.00 0.00 C ATOM 2720 CB PRO 375 21.734 31.415 45.883 1.00 0.00 C ATOM 2721 C PRO 375 19.652 30.189 45.659 1.00 0.00 C ATOM 2722 O PRO 375 18.708 30.436 46.411 1.00 0.00 O ATOM 2723 CG PRO 375 22.429 31.547 44.526 1.00 0.00 C ATOM 2724 CD PRO 375 23.111 30.259 44.061 1.00 0.00 C ATOM 2725 N ILE 376 19.499 29.960 44.362 1.00 0.00 N ATOM 2726 CA ILE 376 18.092 30.133 43.773 1.00 0.00 C ATOM 2727 CB ILE 376 18.303 31.067 42.571 1.00 0.00 C ATOM 2728 C ILE 376 17.566 28.660 43.464 1.00 0.00 C ATOM 2729 O ILE 376 18.208 27.708 43.019 1.00 0.00 O ATOM 2730 CG1 ILE 376 19.218 30.473 41.486 1.00 0.00 C ATOM 2731 CG2 ILE 376 18.944 32.413 42.947 1.00 0.00 C ATOM 2732 CD1 ILE 376 19.227 31.280 40.189 1.00 0.00 C ATOM 2733 N PHE 377 16.296 28.576 43.836 1.00 0.00 N ATOM 2734 CA PHE 377 15.668 27.206 43.718 1.00 0.00 C ATOM 2735 CB PHE 377 16.046 25.921 42.977 1.00 0.00 C ATOM 2736 C PHE 377 15.133 26.965 45.314 1.00 0.00 C ATOM 2737 O PHE 377 15.587 27.325 46.408 1.00 0.00 O ATOM 2738 CG PHE 377 14.980 24.916 43.250 1.00 0.00 C ATOM 2739 CD1 PHE 377 13.739 24.939 42.576 1.00 0.00 C ATOM 2740 CD2 PHE 377 15.197 23.906 44.206 1.00 0.00 C ATOM 2741 CE1 PHE 377 12.727 23.971 42.841 1.00 0.00 C ATOM 2742 CE2 PHE 377 14.200 22.925 44.491 1.00 0.00 C ATOM 2743 CZ PHE 377 12.958 22.960 43.805 1.00 0.00 C ATOM 2744 N GLN 378 13.904 26.473 45.146 1.00 0.00 N ATOM 2745 CA GLN 378 12.680 26.511 45.961 1.00 0.00 C ATOM 2746 CB GLN 378 11.943 27.761 46.491 1.00 0.00 C ATOM 2747 C GLN 378 11.721 25.547 45.647 1.00 0.00 C ATOM 2748 O GLN 378 10.836 26.254 45.162 1.00 0.00 O ATOM 2749 CG GLN 378 10.819 27.434 47.477 1.00 0.00 C ATOM 2750 CD GLN 378 10.349 28.739 48.103 1.00 0.00 C ATOM 2751 OE1 GLN 378 11.064 29.359 48.888 1.00 0.00 O ATOM 2752 NE2 GLN 378 9.118 29.227 47.790 1.00 0.00 N ATOM 2753 N TRP 379 11.535 24.252 45.859 1.00 0.00 N ATOM 2754 CA TRP 379 10.166 23.673 45.706 1.00 0.00 C ATOM 2755 CB TRP 379 10.432 22.812 44.467 1.00 0.00 C ATOM 2756 C TRP 379 9.545 23.561 47.095 1.00 0.00 C ATOM 2757 O TRP 379 8.344 23.677 47.335 1.00 0.00 O ATOM 2758 CG TRP 379 10.705 23.608 43.213 1.00 0.00 C ATOM 2759 CD1 TRP 379 9.831 24.057 42.265 1.00 0.00 C ATOM 2760 CD2 TRP 379 11.979 24.070 42.743 1.00 0.00 C ATOM 2761 NE1 TRP 379 10.402 24.730 41.285 1.00 0.00 N ATOM 2762 CE2 TRP 379 11.750 24.772 41.530 1.00 0.00 C ATOM 2763 CE3 TRP 379 13.299 23.963 43.229 1.00 0.00 C ATOM 2764 CZ2 TRP 379 12.802 25.369 40.785 1.00 0.00 C ATOM 2765 CZ3 TRP 379 14.362 24.560 42.486 1.00 0.00 C ATOM 2766 CH2 TRP 379 14.095 25.253 41.277 1.00 0.00 C ATOM 2767 N SER 380 10.446 23.275 48.034 1.00 0.00 N ATOM 2768 CA SER 380 9.894 23.005 49.436 1.00 0.00 C ATOM 2769 CB SER 380 11.062 22.563 50.306 1.00 0.00 C ATOM 2770 C SER 380 9.511 24.140 50.062 1.00 0.00 C ATOM 2771 O SER 380 10.326 24.539 50.882 1.00 0.00 O ATOM 2772 OG SER 380 11.624 21.363 49.797 1.00 0.00 O ATOM 2773 N GLU 381 8.470 24.878 49.668 1.00 0.00 N ATOM 2774 CA GLU 381 8.706 26.572 49.987 1.00 0.00 C ATOM 2775 CB GLU 381 8.326 27.721 48.978 1.00 0.00 C ATOM 2776 C GLU 381 7.808 26.403 51.475 1.00 0.00 C ATOM 2777 O GLU 381 7.978 27.350 52.234 1.00 0.00 O ATOM 2778 CG GLU 381 9.187 27.731 47.714 1.00 0.00 C ATOM 2779 CD GLU 381 8.741 28.902 46.850 1.00 0.00 C ATOM 2780 OE1 GLU 381 8.684 30.042 47.383 1.00 0.00 O ATOM 2781 OE2 GLU 381 8.451 28.672 45.645 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.13 20.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 100.40 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 95.90 18.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 84.74 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.64 38.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 87.87 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 79.55 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 90.83 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 79.89 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 46.84 63.6 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 43.13 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 50.59 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 46.35 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 51.45 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 49.06 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 26.44 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 39.02 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 49.06 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.15 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.15 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.15 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.46 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.46 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3050 CRMSCA SECONDARY STRUCTURE . . 5.83 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.57 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.81 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.42 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.97 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.52 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.84 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.38 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.34 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.59 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.33 119 99.2 120 CRMSSC BURIED . . . . . . . . 11.98 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.44 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.28 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.52 223 99.6 224 CRMSALL BURIED . . . . . . . . 9.81 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.512 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.413 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.556 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 8.284 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.480 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.480 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.546 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 8.108 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.623 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.603 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.106 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.585 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 11.065 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.537 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 6.655 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.618 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 8.942 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 22 31 31 DISTCA CA (P) 0.00 0.00 3.23 22.58 70.97 31 DISTCA CA (RMS) 0.00 0.00 2.30 3.67 6.70 DISTCA ALL (N) 3 5 13 38 148 253 254 DISTALL ALL (P) 1.18 1.97 5.12 14.96 58.27 254 DISTALL ALL (RMS) 0.90 1.41 2.20 3.54 6.94 DISTALL END of the results output