####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS166_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS166_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 357 - 375 4.84 11.08 LCS_AVERAGE: 53.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 363 - 373 1.99 13.17 LCS_AVERAGE: 24.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 366 - 373 0.95 13.22 LCS_AVERAGE: 16.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 13 3 3 3 4 5 7 8 9 10 12 13 14 20 21 22 23 24 25 25 26 LCS_GDT A 352 A 352 5 7 13 4 5 5 6 6 7 8 9 10 12 13 13 14 16 22 23 24 25 25 26 LCS_GDT E 353 E 353 5 7 13 4 5 5 6 6 7 8 9 10 12 13 18 20 21 22 23 24 25 25 26 LCS_GDT E 354 E 354 5 7 13 4 5 5 6 6 7 8 9 10 12 13 18 20 21 22 23 24 25 25 26 LCS_GDT L 355 L 355 5 7 13 4 5 5 6 6 7 7 9 10 12 12 13 14 16 17 17 24 25 25 26 LCS_GDT G 356 G 356 5 7 13 4 5 5 6 6 7 7 8 10 12 12 13 14 15 17 17 18 20 25 26 LCS_GDT N 357 N 357 4 7 19 3 4 5 6 6 7 7 9 10 12 12 13 15 17 21 23 24 25 25 26 LCS_GDT I 358 I 358 3 7 19 0 3 4 5 6 7 8 9 10 12 14 18 20 21 22 23 24 25 25 26 LCS_GDT I 359 I 359 3 4 19 1 3 3 3 4 7 8 9 10 12 14 18 20 21 22 23 24 25 25 26 LCS_GDT V 360 V 360 3 4 19 1 3 4 4 6 8 8 9 10 12 15 18 20 21 22 23 24 25 25 26 LCS_GDT A 361 A 361 3 3 19 0 3 4 5 8 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT W 362 W 362 4 6 19 3 4 4 6 8 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT N 363 N 363 4 11 19 3 4 4 7 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT P 364 P 364 4 11 19 3 4 7 7 10 10 11 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT N 365 N 365 4 11 19 3 4 6 7 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT L 366 L 366 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT W 367 W 367 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT K 368 K 368 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT K 369 K 369 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT G 370 G 370 8 11 19 3 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT T 371 T 371 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT N 372 N 372 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT G 373 G 373 8 11 19 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT Y 374 Y 374 5 9 19 3 4 4 5 7 8 10 12 14 14 15 18 20 21 22 23 24 25 25 26 LCS_GDT P 375 P 375 5 6 19 3 4 4 5 6 8 9 10 10 12 15 18 20 21 22 23 24 25 25 26 LCS_GDT I 376 I 376 5 6 17 3 4 4 5 6 8 9 10 10 12 12 13 14 16 17 17 19 25 25 26 LCS_GDT F 377 F 377 5 6 12 3 4 4 5 6 8 9 10 10 11 11 11 11 13 15 16 17 19 19 20 LCS_GDT Q 378 Q 378 4 6 12 3 4 4 5 6 7 9 10 10 11 11 11 11 13 14 15 17 19 19 20 LCS_GDT W 379 W 379 4 5 12 3 4 4 4 5 7 9 10 10 11 11 11 11 13 15 16 17 19 19 20 LCS_GDT S 380 S 380 3 5 12 3 3 3 4 6 7 9 10 10 11 11 11 11 13 15 16 17 19 19 20 LCS_GDT E 381 E 381 3 5 12 3 3 4 5 6 7 9 10 10 11 11 11 11 13 13 15 17 19 19 20 LCS_AVERAGE LCS_A: 31.63 ( 16.44 24.77 53.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 8 10 11 12 13 14 14 15 18 20 21 22 23 24 25 25 26 GDT PERCENT_AT 12.90 19.35 22.58 25.81 32.26 35.48 38.71 41.94 45.16 45.16 48.39 58.06 64.52 67.74 70.97 74.19 77.42 80.65 80.65 83.87 GDT RMS_LOCAL 0.29 0.45 0.69 0.95 1.70 1.95 2.13 2.36 2.81 2.81 3.37 4.38 4.81 5.03 5.33 5.56 5.87 6.16 6.16 6.46 GDT RMS_ALL_AT 14.17 14.09 13.12 13.22 14.05 12.91 12.81 12.89 12.36 12.36 12.12 11.30 10.82 10.63 10.42 10.28 10.12 9.98 9.98 9.85 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 13.392 0 0.228 0.304 13.998 0.000 0.000 LGA A 352 A 352 15.827 0 0.632 0.612 17.628 0.000 0.000 LGA E 353 E 353 10.971 0 0.068 0.918 12.220 0.000 4.656 LGA E 354 E 354 11.446 0 0.048 1.295 13.197 0.000 0.000 LGA L 355 L 355 16.896 0 0.084 0.822 22.210 0.000 0.000 LGA G 356 G 356 17.308 0 0.076 0.076 17.308 0.000 0.000 LGA N 357 N 357 11.832 0 0.577 0.615 13.390 0.000 1.488 LGA I 358 I 358 9.438 0 0.545 0.786 9.837 0.952 1.190 LGA I 359 I 359 10.133 0 0.552 1.027 13.528 0.238 0.119 LGA V 360 V 360 8.192 0 0.627 0.644 10.069 7.500 5.646 LGA A 361 A 361 3.198 0 0.693 0.623 4.715 43.929 48.095 LGA W 362 W 362 3.552 0 0.646 1.105 7.817 41.310 31.190 LGA N 363 N 363 2.205 0 0.162 0.366 5.544 70.952 53.631 LGA P 364 P 364 3.907 0 0.126 0.118 6.425 43.214 34.898 LGA N 365 N 365 1.317 0 0.099 1.328 5.357 77.262 62.143 LGA L 366 L 366 2.486 0 0.554 1.223 7.393 75.119 49.583 LGA W 367 W 367 2.436 0 0.047 1.219 10.876 60.952 27.415 LGA K 368 K 368 2.274 0 0.235 1.124 3.168 75.119 63.598 LGA K 369 K 369 1.407 0 0.142 1.567 5.585 86.190 65.767 LGA G 370 G 370 0.615 0 0.072 0.072 0.994 90.476 90.476 LGA T 371 T 371 1.326 0 0.687 0.957 4.173 72.024 67.279 LGA N 372 N 372 1.971 0 0.071 0.942 5.070 70.833 60.357 LGA G 373 G 373 1.550 0 0.660 0.660 3.374 65.357 65.357 LGA Y 374 Y 374 6.971 0 0.018 1.457 9.266 12.738 8.095 LGA P 375 P 375 9.569 0 0.019 0.042 13.581 1.310 6.939 LGA I 376 I 376 17.045 0 0.323 1.159 21.926 0.000 0.000 LGA F 377 F 377 20.365 0 0.154 1.076 22.506 0.000 0.000 LGA Q 378 Q 378 23.949 0 0.140 0.810 25.079 0.000 0.000 LGA W 379 W 379 24.402 0 0.470 1.426 27.267 0.000 0.000 LGA S 380 S 380 25.484 0 0.334 0.719 26.081 0.000 0.000 LGA E 381 E 381 27.315 1 0.118 0.232 28.768 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.285 9.270 9.865 28.886 24.127 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.36 40.323 36.738 0.529 LGA_LOCAL RMSD: 2.360 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.886 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.285 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.021840 * X + 0.754603 * Y + -0.655818 * Z + 62.567837 Y_new = 0.978130 * X + 0.119590 * Y + 0.170177 * Z + 38.058289 Z_new = 0.206846 * X + -0.645192 * Y + -0.735488 * Z + -37.692780 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.548472 -0.208350 -2.421501 [DEG: 88.7209 -11.9376 -138.7418 ] ZXZ: -1.824685 2.397183 2.831350 [DEG: -104.5468 137.3484 162.2244 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS166_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS166_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.36 36.738 9.29 REMARK ---------------------------------------------------------- MOLECULE T0537TS166_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2odlA ATOM 2529 N SER 351 -3.172 3.684 52.045 1.00 0.00 N ATOM 2530 CA SER 351 -3.753 3.077 53.209 1.00 0.00 C ATOM 2531 C SER 351 -3.188 3.864 54.339 1.00 0.00 C ATOM 2532 O SER 351 -3.056 5.083 54.251 1.00 0.00 O ATOM 2533 CB SER 351 -3.364 1.606 53.455 1.00 0.00 C ATOM 2534 OG SER 351 -1.960 1.493 53.626 1.00 0.00 O ATOM 2535 N ALA 352 -2.892 3.185 55.459 1.00 0.00 N ATOM 2536 CA ALA 352 -2.227 3.872 56.519 1.00 0.00 C ATOM 2537 C ALA 352 -0.784 3.935 56.128 1.00 0.00 C ATOM 2538 O ALA 352 -0.271 3.045 55.453 1.00 0.00 O ATOM 2539 CB ALA 352 -2.315 3.161 57.880 1.00 0.00 C ATOM 2540 N GLU 353 -0.093 5.011 56.540 1.00 0.00 N ATOM 2541 CA GLU 353 1.291 5.205 56.223 1.00 0.00 C ATOM 2542 C GLU 353 2.093 4.157 56.925 1.00 0.00 C ATOM 2543 O GLU 353 3.116 3.701 56.420 1.00 0.00 O ATOM 2544 CB GLU 353 1.849 6.562 56.689 1.00 0.00 C ATOM 2545 CG GLU 353 1.919 6.725 58.209 1.00 0.00 C ATOM 2546 CD GLU 353 0.634 7.379 58.692 1.00 0.00 C ATOM 2547 OE1 GLU 353 -0.466 6.926 58.280 1.00 0.00 O ATOM 2548 OE2 GLU 353 0.739 8.355 59.482 1.00 0.00 O ATOM 2549 N GLU 354 1.636 3.738 58.118 1.00 0.00 N ATOM 2550 CA GLU 354 2.414 2.843 58.922 1.00 0.00 C ATOM 2551 C GLU 354 2.732 1.603 58.147 1.00 0.00 C ATOM 2552 O GLU 354 3.883 1.172 58.119 1.00 0.00 O ATOM 2553 CB GLU 354 1.658 2.402 60.190 1.00 0.00 C ATOM 2554 CG GLU 354 2.446 1.467 61.111 1.00 0.00 C ATOM 2555 CD GLU 354 3.323 2.316 62.022 1.00 0.00 C ATOM 2556 OE1 GLU 354 3.206 3.568 61.959 1.00 0.00 O ATOM 2557 OE2 GLU 354 4.119 1.721 62.797 1.00 0.00 O ATOM 2558 N LEU 355 1.720 0.951 57.544 1.00 0.00 N ATOM 2559 CA LEU 355 2.015 -0.254 56.821 1.00 0.00 C ATOM 2560 C LEU 355 2.666 0.040 55.494 1.00 0.00 C ATOM 2561 O LEU 355 3.752 -0.458 55.196 1.00 0.00 O ATOM 2562 CB LEU 355 0.734 -1.079 56.559 1.00 0.00 C ATOM 2563 CG LEU 355 0.907 -2.532 56.044 1.00 0.00 C ATOM 2564 CD1 LEU 355 -0.469 -3.190 55.848 1.00 0.00 C ATOM 2565 CD2 LEU 355 1.772 -2.656 54.780 1.00 0.00 C ATOM 2566 N GLY 356 1.972 0.858 54.675 1.00 0.00 N ATOM 2567 CA GLY 356 2.241 1.176 53.293 1.00 0.00 C ATOM 2568 C GLY 356 3.400 2.082 52.998 1.00 0.00 C ATOM 2569 O GLY 356 4.067 1.921 51.974 1.00 0.00 O ATOM 2570 N ASN 357 3.639 3.095 53.847 1.00 0.00 N ATOM 2571 CA ASN 357 4.610 4.100 53.520 1.00 0.00 C ATOM 2572 C ASN 357 5.963 3.500 53.458 1.00 0.00 C ATOM 2573 O ASN 357 6.185 2.382 53.914 1.00 0.00 O ATOM 2574 CB ASN 357 4.662 5.279 54.505 1.00 0.00 C ATOM 2575 CG ASN 357 3.444 6.150 54.243 1.00 0.00 C ATOM 2576 OD1 ASN 357 2.421 5.678 53.750 1.00 0.00 O ATOM 2577 ND2 ASN 357 3.557 7.467 54.570 1.00 0.00 N ATOM 2578 N ILE 358 6.921 4.226 52.855 1.00 0.00 N ATOM 2579 CA ILE 358 8.210 3.632 52.754 1.00 0.00 C ATOM 2580 C ILE 358 9.220 4.583 53.309 1.00 0.00 C ATOM 2581 O ILE 358 8.826 5.562 53.932 1.00 0.00 O ATOM 2582 CB ILE 358 8.467 2.934 51.446 1.00 0.00 C ATOM 2583 CG1 ILE 358 7.381 1.844 51.378 1.00 0.00 C ATOM 2584 CG2 ILE 358 9.825 2.202 51.449 1.00 0.00 C ATOM 2585 CD1 ILE 358 7.626 0.677 52.337 1.00 0.00 C ATOM 2586 N ILE 359 10.526 4.285 53.176 1.00 0.00 N ATOM 2587 CA ILE 359 11.592 4.933 53.884 1.00 0.00 C ATOM 2588 C ILE 359 12.220 6.101 53.187 1.00 0.00 C ATOM 2589 O ILE 359 12.527 6.082 51.999 1.00 0.00 O ATOM 2590 CB ILE 359 12.712 3.981 54.214 1.00 0.00 C ATOM 2591 CG1 ILE 359 13.848 4.699 54.966 1.00 0.00 C ATOM 2592 CG2 ILE 359 13.153 3.282 52.918 1.00 0.00 C ATOM 2593 CD1 ILE 359 14.875 3.746 55.576 1.00 0.00 C ATOM 2594 N VAL 360 12.408 7.167 53.987 1.00 0.00 N ATOM 2595 CA VAL 360 13.075 8.400 53.737 1.00 0.00 C ATOM 2596 C VAL 360 14.023 8.621 54.880 1.00 0.00 C ATOM 2597 O VAL 360 13.661 8.504 56.053 1.00 0.00 O ATOM 2598 CB VAL 360 12.153 9.583 53.696 1.00 0.00 C ATOM 2599 CG1 VAL 360 13.000 10.857 53.534 1.00 0.00 C ATOM 2600 CG2 VAL 360 11.128 9.368 52.569 1.00 0.00 C ATOM 2601 N ALA 361 15.291 8.927 54.561 1.00 0.00 N ATOM 2602 CA ALA 361 16.245 9.213 55.589 1.00 0.00 C ATOM 2603 C ALA 361 16.944 10.459 55.167 1.00 0.00 C ATOM 2604 O ALA 361 17.350 10.587 54.013 1.00 0.00 O ATOM 2605 CB ALA 361 17.320 8.126 55.754 1.00 0.00 C ATOM 2606 N TRP 362 17.071 11.430 56.091 1.00 0.00 N ATOM 2607 CA TRP 362 17.793 12.633 55.797 1.00 0.00 C ATOM 2608 C TRP 362 18.726 12.842 56.944 1.00 0.00 C ATOM 2609 O TRP 362 18.272 12.979 58.079 1.00 0.00 O ATOM 2610 CB TRP 362 16.913 13.894 55.749 1.00 0.00 C ATOM 2611 CG TRP 362 17.683 15.159 55.453 1.00 0.00 C ATOM 2612 CD1 TRP 362 18.411 15.938 56.302 1.00 0.00 C ATOM 2613 CD2 TRP 362 17.749 15.792 54.166 1.00 0.00 C ATOM 2614 NE1 TRP 362 18.945 17.005 55.624 1.00 0.00 N ATOM 2615 CE2 TRP 362 18.541 16.932 54.307 1.00 0.00 C ATOM 2616 CE3 TRP 362 17.187 15.459 52.969 1.00 0.00 C ATOM 2617 CZ2 TRP 362 18.784 17.757 53.247 1.00 0.00 C ATOM 2618 CZ3 TRP 362 17.446 16.285 51.898 1.00 0.00 C ATOM 2619 CH2 TRP 362 18.230 17.411 52.035 1.00 0.00 H ATOM 2620 N ASN 363 20.055 12.862 56.698 1.00 0.00 N ATOM 2621 CA ASN 363 20.920 13.083 57.824 1.00 0.00 C ATOM 2622 C ASN 363 22.184 13.761 57.389 1.00 0.00 C ATOM 2623 O ASN 363 22.848 13.357 56.437 1.00 0.00 O ATOM 2624 CB ASN 363 21.346 11.792 58.543 1.00 0.00 C ATOM 2625 CG ASN 363 22.047 12.188 59.836 1.00 0.00 C ATOM 2626 OD1 ASN 363 21.753 13.229 60.422 1.00 0.00 O ATOM 2627 ND2 ASN 363 23.009 11.341 60.291 1.00 0.00 N ATOM 2628 N PRO 364 22.431 14.895 57.971 1.00 0.00 N ATOM 2629 CA PRO 364 23.699 15.531 57.716 1.00 0.00 C ATOM 2630 C PRO 364 24.858 15.248 58.618 1.00 0.00 C ATOM 2631 O PRO 364 25.974 15.078 58.145 1.00 0.00 O ATOM 2632 CB PRO 364 23.434 17.025 57.668 1.00 0.00 C ATOM 2633 CG PRO 364 21.934 17.130 57.384 1.00 0.00 C ATOM 2634 CD PRO 364 21.348 15.859 58.000 1.00 0.00 C ATOM 2635 N ASN 365 24.580 15.070 59.911 1.00 0.00 N ATOM 2636 CA ASN 365 25.502 15.137 61.013 1.00 0.00 C ATOM 2637 C ASN 365 25.500 16.586 61.399 1.00 0.00 C ATOM 2638 O ASN 365 25.913 16.956 62.495 1.00 0.00 O ATOM 2639 CB ASN 365 26.971 14.714 60.731 1.00 0.00 C ATOM 2640 CG ASN 365 27.820 15.783 60.032 1.00 0.00 C ATOM 2641 OD1 ASN 365 27.370 16.748 59.417 1.00 0.00 O ATOM 2642 ND2 ASN 365 29.161 15.589 60.129 1.00 0.00 N ATOM 2643 N LEU 366 24.978 17.432 60.487 1.00 0.00 N ATOM 2644 CA LEU 366 24.675 18.818 60.720 1.00 0.00 C ATOM 2645 C LEU 366 23.421 19.035 59.938 1.00 0.00 C ATOM 2646 O LEU 366 23.446 19.585 58.837 1.00 0.00 O ATOM 2647 CB LEU 366 25.731 19.812 60.202 1.00 0.00 C ATOM 2648 CG LEU 366 26.967 19.980 61.111 1.00 0.00 C ATOM 2649 CD1 LEU 366 27.723 18.665 61.340 1.00 0.00 C ATOM 2650 CD2 LEU 366 27.879 21.096 60.581 1.00 0.00 C ATOM 2651 N TRP 367 22.280 18.622 60.524 1.00 0.00 N ATOM 2652 CA TRP 367 21.026 18.644 59.828 1.00 0.00 C ATOM 2653 C TRP 367 20.286 19.900 60.121 1.00 0.00 C ATOM 2654 O TRP 367 20.258 20.388 61.251 1.00 0.00 O ATOM 2655 CB TRP 367 20.089 17.487 60.227 1.00 0.00 C ATOM 2656 CG TRP 367 18.751 17.464 59.519 1.00 0.00 C ATOM 2657 CD1 TRP 367 18.368 18.062 58.354 1.00 0.00 C ATOM 2658 CD2 TRP 367 17.596 16.767 60.013 1.00 0.00 C ATOM 2659 NE1 TRP 367 17.046 17.786 58.094 1.00 0.00 N ATOM 2660 CE2 TRP 367 16.559 16.991 59.108 1.00 0.00 C ATOM 2661 CE3 TRP 367 17.413 16.006 61.131 1.00 0.00 C ATOM 2662 CZ2 TRP 367 15.318 16.457 59.309 1.00 0.00 C ATOM 2663 CZ3 TRP 367 16.162 15.465 61.329 1.00 0.00 C ATOM 2664 CH2 TRP 367 15.134 15.688 60.436 1.00 0.00 H ATOM 2665 N LYS 368 19.671 20.463 59.067 1.00 0.00 N ATOM 2666 CA LYS 368 18.867 21.627 59.249 1.00 0.00 C ATOM 2667 C LYS 368 17.508 21.288 58.729 1.00 0.00 C ATOM 2668 O LYS 368 17.273 21.287 57.523 1.00 0.00 O ATOM 2669 CB LYS 368 19.360 22.832 58.433 1.00 0.00 C ATOM 2670 CG LYS 368 20.818 23.200 58.714 1.00 0.00 C ATOM 2671 CD LYS 368 21.109 23.537 60.177 1.00 0.00 C ATOM 2672 CE LYS 368 20.611 24.920 60.603 1.00 0.00 C ATOM 2673 NZ LYS 368 20.971 25.173 62.015 1.00 0.00 N ATOM 2674 N LYS 369 16.568 20.987 59.641 1.00 0.00 N ATOM 2675 CA LYS 369 15.227 20.722 59.218 1.00 0.00 C ATOM 2676 C LYS 369 14.573 22.061 59.214 1.00 0.00 C ATOM 2677 O LYS 369 14.294 22.633 60.267 1.00 0.00 O ATOM 2678 CB LYS 369 14.477 19.790 60.191 1.00 0.00 C ATOM 2679 CG LYS 369 13.036 19.445 59.798 1.00 0.00 C ATOM 2680 CD LYS 369 12.072 20.632 59.828 1.00 0.00 C ATOM 2681 CE LYS 369 11.884 21.241 61.220 1.00 0.00 C ATOM 2682 NZ LYS 369 11.221 20.265 62.114 1.00 0.00 N ATOM 2683 N GLY 370 14.322 22.605 58.011 1.00 0.00 N ATOM 2684 CA GLY 370 13.765 23.920 57.928 1.00 0.00 C ATOM 2685 C GLY 370 12.286 23.821 58.048 1.00 0.00 C ATOM 2686 O GLY 370 11.711 22.736 58.112 1.00 0.00 O ATOM 2687 N THR 371 11.617 24.985 58.043 1.00 0.00 N ATOM 2688 CA THR 371 10.198 24.963 58.160 1.00 0.00 C ATOM 2689 C THR 371 9.706 24.786 56.770 1.00 0.00 C ATOM 2690 O THR 371 10.376 25.172 55.817 1.00 0.00 O ATOM 2691 CB THR 371 9.614 26.236 58.688 1.00 0.00 C ATOM 2692 OG1 THR 371 10.142 26.515 59.977 1.00 0.00 O ATOM 2693 CG2 THR 371 8.085 26.086 58.762 1.00 0.00 C ATOM 2694 N ASN 372 8.497 24.218 56.637 1.00 0.00 N ATOM 2695 CA ASN 372 7.898 23.896 55.378 1.00 0.00 C ATOM 2696 C ASN 372 8.462 22.620 54.860 1.00 0.00 C ATOM 2697 O ASN 372 8.211 22.258 53.712 1.00 0.00 O ATOM 2698 CB ASN 372 8.100 24.979 54.303 1.00 0.00 C ATOM 2699 CG ASN 372 7.237 26.170 54.682 1.00 0.00 C ATOM 2700 OD1 ASN 372 7.727 27.269 54.938 1.00 0.00 O ATOM 2701 ND2 ASN 372 5.897 25.942 54.722 1.00 0.00 N ATOM 2702 N GLY 373 9.197 21.868 55.700 1.00 0.00 N ATOM 2703 CA GLY 373 9.643 20.594 55.224 1.00 0.00 C ATOM 2704 C GLY 373 8.759 19.559 55.845 1.00 0.00 C ATOM 2705 O GLY 373 8.655 19.470 57.067 1.00 0.00 O ATOM 2706 N TYR 374 8.063 18.758 55.013 1.00 0.00 N ATOM 2707 CA TYR 374 7.274 17.724 55.618 1.00 0.00 C ATOM 2708 C TYR 374 7.440 16.438 54.870 1.00 0.00 C ATOM 2709 O TYR 374 7.184 16.338 53.670 1.00 0.00 O ATOM 2710 CB TYR 374 5.777 18.069 55.765 1.00 0.00 C ATOM 2711 CG TYR 374 5.174 18.368 54.437 1.00 0.00 C ATOM 2712 CD1 TYR 374 4.640 17.362 53.663 1.00 0.00 C ATOM 2713 CD2 TYR 374 5.133 19.662 53.972 1.00 0.00 C ATOM 2714 CE1 TYR 374 4.078 17.643 52.440 1.00 0.00 C ATOM 2715 CE2 TYR 374 4.572 19.948 52.750 1.00 0.00 C ATOM 2716 CZ TYR 374 4.044 18.938 51.984 1.00 0.00 C ATOM 2717 OH TYR 374 3.467 19.230 50.730 1.00 0.00 H ATOM 2718 N PRO 375 7.957 15.472 55.582 1.00 0.00 N ATOM 2719 CA PRO 375 8.085 14.158 54.995 1.00 0.00 C ATOM 2720 C PRO 375 6.905 13.269 55.252 1.00 0.00 C ATOM 2721 O PRO 375 6.277 13.391 56.303 1.00 0.00 O ATOM 2722 CB PRO 375 9.365 13.551 55.566 1.00 0.00 C ATOM 2723 CG PRO 375 10.188 14.764 56.024 1.00 0.00 C ATOM 2724 CD PRO 375 9.124 15.810 56.380 1.00 0.00 C ATOM 2725 N ILE 376 6.593 12.355 54.313 1.00 0.00 N ATOM 2726 CA ILE 376 5.601 11.356 54.582 1.00 0.00 C ATOM 2727 C ILE 376 6.253 10.022 54.323 1.00 0.00 C ATOM 2728 O ILE 376 6.413 9.587 53.183 1.00 0.00 O ATOM 2729 CB ILE 376 4.349 11.491 53.755 1.00 0.00 C ATOM 2730 CG1 ILE 376 3.333 10.408 54.158 1.00 0.00 C ATOM 2731 CG2 ILE 376 4.716 11.521 52.263 1.00 0.00 C ATOM 2732 CD1 ILE 376 1.923 10.662 53.626 1.00 0.00 C ATOM 2733 N PHE 377 6.632 9.336 55.415 1.00 0.00 N ATOM 2734 CA PHE 377 7.318 8.064 55.442 1.00 0.00 C ATOM 2735 C PHE 377 6.510 7.326 56.444 1.00 0.00 C ATOM 2736 O PHE 377 5.528 7.870 56.950 1.00 0.00 O ATOM 2737 CB PHE 377 8.631 8.501 56.194 1.00 0.00 C ATOM 2738 CG PHE 377 9.755 7.545 56.612 1.00 0.00 C ATOM 2739 CD1 PHE 377 9.630 6.215 56.955 1.00 0.00 C ATOM 2740 CD2 PHE 377 11.043 8.021 56.686 1.00 0.00 C ATOM 2741 CE1 PHE 377 10.662 5.399 57.353 1.00 0.00 C ATOM 2742 CE2 PHE 377 12.108 7.225 57.091 1.00 0.00 C ATOM 2743 CZ PHE 377 11.926 5.908 57.424 1.00 0.00 C ATOM 2744 N GLN 378 6.863 6.060 56.720 1.00 0.00 N ATOM 2745 CA GLN 378 6.227 5.444 57.836 1.00 0.00 C ATOM 2746 C GLN 378 6.525 6.404 58.945 1.00 0.00 C ATOM 2747 O GLN 378 5.647 6.792 59.712 1.00 0.00 O ATOM 2748 CB GLN 378 6.856 4.102 58.245 1.00 0.00 C ATOM 2749 CG GLN 378 6.190 3.481 59.475 1.00 0.00 C ATOM 2750 CD GLN 378 7.045 2.313 59.942 1.00 0.00 C ATOM 2751 OE1 GLN 378 6.758 1.687 60.960 1.00 0.00 O ATOM 2752 NE2 GLN 378 8.133 2.018 59.183 1.00 0.00 N ATOM 2753 N TRP 379 7.798 6.834 59.029 1.00 0.00 N ATOM 2754 CA TRP 379 8.182 7.883 59.921 1.00 0.00 C ATOM 2755 C TRP 379 8.355 7.275 61.269 1.00 0.00 C ATOM 2756 O TRP 379 7.393 7.195 62.023 1.00 0.00 O ATOM 2757 CB TRP 379 7.977 9.392 60.130 1.00 0.00 C ATOM 2758 CG TRP 379 9.240 10.105 60.546 1.00 0.00 C ATOM 2759 CD1 TRP 379 9.734 10.380 61.787 1.00 0.00 C ATOM 2760 CD2 TRP 379 10.187 10.628 59.604 1.00 0.00 C ATOM 2761 NE1 TRP 379 10.934 11.043 61.675 1.00 0.00 N ATOM 2762 CE2 TRP 379 11.224 11.203 60.336 1.00 0.00 C ATOM 2763 CE3 TRP 379 10.190 10.627 58.238 1.00 0.00 C ATOM 2764 CZ2 TRP 379 12.288 11.789 59.709 1.00 0.00 C ATOM 2765 CZ3 TRP 379 11.261 11.220 57.608 1.00 0.00 C ATOM 2766 CH2 TRP 379 12.290 11.791 58.331 1.00 0.00 H ATOM 2767 N SER 380 9.586 6.854 61.621 1.00 0.00 N ATOM 2768 CA SER 380 9.823 6.187 62.868 1.00 0.00 C ATOM 2769 C SER 380 9.908 7.177 63.977 1.00 0.00 C ATOM 2770 O SER 380 10.969 7.410 64.555 1.00 0.00 O ATOM 2771 CB SER 380 9.160 4.924 63.441 1.00 0.00 C ATOM 2772 OG SER 380 7.883 5.248 63.975 1.00 0.00 O ATOM 2773 N GLU 381 8.755 7.806 64.280 1.00 0.00 N ATOM 2774 CA GLU 381 8.670 8.726 65.373 1.00 0.00 C ATOM 2775 C GLU 381 7.232 9.223 65.365 1.00 0.00 C ATOM 2776 O GLU 381 6.874 9.956 64.402 1.00 0.00 O ATOM 2777 CB GLU 381 9.556 9.982 65.403 1.00 0.00 C ATOM 2778 CG GLU 381 9.385 10.800 66.686 1.00 0.00 C ATOM 2779 CD GLU 381 10.299 12.017 66.617 1.00 0.00 C ATOM 2780 OE1 GLU 381 10.179 12.794 65.630 1.00 0.00 O ATOM 2781 OE2 GLU 381 11.126 12.188 67.550 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.65 53.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 94.06 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 85.24 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 81.66 70.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.44 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 100.38 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 86.25 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 102.00 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 64.99 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.27 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 64.32 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 67.64 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 64.23 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 6.18 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.75 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 70.97 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 42.20 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 86.75 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.91 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 79.91 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 79.91 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.29 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.29 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2995 CRMSCA SECONDARY STRUCTURE . . 5.41 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.75 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.34 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.36 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.46 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.84 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.06 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.53 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 10.57 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.14 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.83 119 99.2 120 CRMSSC BURIED . . . . . . . . 5.78 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.93 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 6.83 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.34 223 99.6 224 CRMSALL BURIED . . . . . . . . 6.13 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.133 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 4.908 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.689 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 5.238 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.220 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 4.975 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.774 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 5.116 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.575 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 9.558 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 7.372 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.923 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 5.442 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.875 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 6.054 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.348 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 5.353 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 4 8 21 31 31 DISTCA CA (P) 0.00 6.45 12.90 25.81 67.74 31 DISTCA CA (RMS) 0.00 1.58 2.05 2.93 6.34 DISTCA ALL (N) 0 9 24 58 157 253 254 DISTALL ALL (P) 0.00 3.54 9.45 22.83 61.81 254 DISTALL ALL (RMS) 0.00 1.65 2.12 3.37 6.64 DISTALL END of the results output